AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0947650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947650 MtrunA17_Chr6g0462121 96.581 351 11 1 1 350 1 351 0.0 694
Msa0947650 MtrunA17_Chr8g0369041 56.232 345 150 1 5 348 17 361 3.49e-135 389
Msa0947650 MtrunA17_Chr6g0462941 90.821 207 17 1 123 327 1 207 3.08e-120 346
Msa0947650 MtrunA17_Chr2g0296681 41.768 328 170 5 20 335 13 331 1.34e-77 241
Msa0947650 MtrunA17_Chr5g0429351 41.502 253 100 3 88 336 13 221 1.53e-60 194
Msa0947650 MtrunA17_Chr6g0462931 73.626 91 24 0 19 109 22 112 3.94e-38 133
Msa0947650 MtrunA17_Chr2g0325411 33.333 237 137 4 88 307 314 546 8.88e-30 120
Msa0947650 MtrunA17_Chr4g0049491 27.200 375 210 10 13 337 82 443 2.20e-29 118
Msa0947650 MtrunA17_Chr2g0325391 32.510 243 131 6 88 307 303 535 5.95e-29 117
Msa0947650 MtrunA17_Chr4g0040981 31.496 254 137 6 88 317 662 902 1.26e-27 114
Msa0947650 MtrunA17_Chr4g0049471 27.011 348 201 8 32 337 69 405 5.92e-26 108
Msa0947650 MtrunA17_Chr7g0230041 29.661 236 153 3 88 322 189 412 2.27e-25 107
Msa0947650 MtrunA17_Chr3g0116311 28.279 244 161 3 70 311 195 426 6.33e-22 97.1
Msa0947650 MtrunA17_Chr2g0285151 45.263 95 49 1 88 182 86 177 1.21e-19 90.1
Msa0947650 MtrunA17_Chr2g0277091 37.895 95 57 1 88 182 202 294 1.47e-14 74.7
Msa0947650 MtrunA17_Chr7g0230031 31.481 162 86 8 23 164 120 276 4.01e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947650 AT3G52280.1 59.935 307 118 1 6 312 24 325 8.73e-121 353
Msa0947650 AT2G34900.1 48.656 372 141 6 5 348 35 384 6.81e-118 346
Msa0947650 AT3G52280.2 59.000 300 118 1 13 312 48 342 4.75e-116 342
Msa0947650 AT2G34900.2 54.152 277 114 3 82 348 1 274 8.06e-106 311
Msa0947650 AT1G06230.2 34.940 249 124 6 88 307 428 667 1.44e-31 125
Msa0947650 AT1G06230.4 34.940 249 124 6 88 307 428 667 1.44e-31 125
Msa0947650 AT1G06230.1 34.940 249 124 6 88 307 428 667 1.44e-31 125
Msa0947650 AT1G06230.3 34.940 249 124 6 88 307 428 667 1.44e-31 125
Msa0947650 AT5G10550.1 40.164 122 70 1 74 195 167 285 7.03e-24 103
Msa0947650 AT5G14270.3 28.912 294 176 10 67 344 123 399 4.93e-23 100
Msa0947650 AT5G14270.1 28.912 294 176 10 67 344 123 399 4.93e-23 100
Msa0947650 AT5G14270.2 28.912 294 176 10 67 344 123 399 5.32e-23 100
Msa0947650 AT1G73150.2 42.982 114 62 1 72 185 110 220 1.37e-21 95.5
Msa0947650 AT1G73150.1 42.982 114 62 1 72 185 110 220 1.59e-21 95.5
Msa0947650 AT3G27260.4 30.924 249 135 7 68 303 163 387 7.26e-21 94.4
Msa0947650 AT3G27260.3 30.924 249 135 7 68 303 163 387 7.27e-21 94.4
Msa0947650 AT3G27260.2 30.924 249 135 7 68 303 114 338 8.69e-21 94.4
Msa0947650 AT3G27260.1 30.924 249 135 7 68 303 163 387 9.38e-21 94.0
Msa0947650 AT5G65630.1 41.509 106 59 1 74 179 162 264 4.40e-20 92.0
Msa0947650 AT1G17790.1 38.053 113 67 1 73 185 124 233 1.19e-18 87.4
Msa0947650 AT5G63320.3 27.306 271 174 7 50 319 139 387 2.97e-18 86.3
Msa0947650 AT5G63320.2 27.306 271 174 7 50 319 139 387 2.97e-18 86.3
Msa0947650 AT5G46550.1 41.053 95 53 1 88 182 76 167 3.18e-17 83.2
Msa0947650 AT5G63320.1 26.712 292 185 8 29 319 124 387 5.53e-17 82.8
Msa0947650 AT3G01770.2 36.000 125 76 3 58 182 107 227 1.05e-16 81.6
Msa0947650 AT3G01770.1 36.000 125 76 3 58 182 107 227 1.74e-16 81.3
Msa0947650 AT1G58025.2 30.405 148 95 3 36 182 174 314 1.35e-12 69.3
Msa0947650 AT1G58025.6 30.405 148 95 3 36 182 174 314 1.60e-12 68.9
Msa0947650 AT1G58025.1 30.405 148 95 3 36 182 174 314 1.60e-12 68.9
Msa0947650 AT1G58025.4 30.405 148 95 3 36 182 174 314 1.64e-12 68.9
Msa0947650 AT1G58025.5 30.405 148 95 3 36 182 174 314 1.64e-12 68.9
Msa0947650 AT1G58025.3 30.405 148 95 3 36 182 174 314 1.64e-12 68.9

Find 91 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGAAATACTTACAAAAT+TGG 0.176012 6_3:+30685786 None:intergenic
ACATCCACTGGTTGCATAAA+AGG 0.222918 6_3:+30688460 None:intergenic
GGCGGATGTGTTGGGTTTAA+TGG 0.232307 6_3:+30692020 None:intergenic
CTTGGAAGTTTGGATTAGTT+TGG 0.253512 6_3:+30686450 None:intergenic
AAAAGTGTAGTATTACATTT+TGG 0.266447 6_3:-30685843 Msa0947650:three_prime_UTR
ATAGCTACCTGGCGTAATAT+TGG 0.274424 6_3:+30689752 None:intergenic
TTCCCTTCCGGACGTGTTAA+TGG 0.276658 6_3:-30691963 Msa0947650:exon
AGAAGCAGTTCATGCTAAAA+TGG 0.278616 6_3:-30687013 Msa0947650:CDS
TCAGCATTTGCTTGGAAGTT+TGG 0.300089 6_3:+30686440 None:intergenic
TTCCGTCGTTAGCCTCTATT+TGG 0.301712 6_3:+30687432 None:intergenic
GGAGATAACATGCTACTCTT+AGG 0.306215 6_3:-30686078 Msa0947650:three_prime_UTR
TGACCTTCAAGTAGGCTTCT+TGG 0.312255 6_3:+30686104 None:intergenic
AGCCTCTATTTGGTTCTTAA+TGG 0.316810 6_3:+30687442 None:intergenic
GAGCAAGAATTCAGAAAGTA+TGG 0.325780 6_3:-30686199 Msa0947650:CDS
TATGAAATACTTACAAAATT+GGG 0.362862 6_3:+30685787 None:intergenic
TGCTGTAGCTTCTTAATACT+TGG 0.363065 6_3:+30689839 None:intergenic
ACTGAAGAAAAGAGAAATCT+TGG 0.368818 6_3:-30686530 Msa0947650:CDS
AAGCCTACTTGAAGGTCATT+TGG 0.372649 6_3:-30686099 Msa0947650:exon
TCAAACTAGGTTACATTTCA+AGG 0.373160 6_3:+30685948 None:intergenic
TGGAAAAGTTTGAGGAGAAA+TGG 0.373541 6_3:-30687298 Msa0947650:CDS
ATCCGTCCGCCTTTCCCTTC+CGG 0.381345 6_3:-30691975 Msa0947650:five_prime_UTR
TTGGAAGTTTGGATTAGTTT+GGG 0.381811 6_3:+30686451 None:intergenic
TAGCTACCTGGCGTAATATT+GGG 0.388940 6_3:+30689753 None:intergenic
TACTTTCTGAATTCTTGCTC+TGG 0.394207 6_3:+30686202 None:intergenic
CAAGATCTTATACGCCAGTT+TGG 0.395822 6_3:-30689776 Msa0947650:CDS
GTTAGTTTCAAAAGTTGATC+AGG 0.400473 6_3:-30691909 Msa0947650:intron
GTCAGATGACACAACACAAA+TGG 0.408124 6_3:-30688489 Msa0947650:intron
GGCGTAATATTGGGCCAAAC+TGG 0.421534 6_3:+30689762 None:intergenic
TCCTGCAGCTTGAGCAGAAA+GGG 0.425690 6_3:-30689961 Msa0947650:intron
CGGCTTAAATGATTATTATG+AGG 0.428262 6_3:-30688428 Msa0947650:intron
AACTTTACTGGAAAAGTTTG+AGG 0.428594 6_3:-30687306 Msa0947650:CDS
GAACTGGATATAAGCATGTT+CGG 0.430894 6_3:-30687412 Msa0947650:CDS
ATAGAGGCTAACGACGGAAC+TGG 0.446418 6_3:-30687428 Msa0947650:CDS
AACTGGATATAAGCATGTTC+GGG 0.447896 6_3:-30687411 Msa0947650:CDS
AGCTTATGCTGATGTGAGGT+TGG 0.456697 6_3:-30687387 Msa0947650:CDS
AAGCATACTGGCACGTCAAA+AGG 0.456946 6_3:-30689902 Msa0947650:CDS
ATGTACATTTAGAAGAGCTC+CGG 0.460434 6_3:-30686873 Msa0947650:CDS
CCACCTCGTCAGCATTTGCT+TGG 0.471621 6_3:+30686432 None:intergenic
AATGCTCTTCTAAGATCGTC+AGG 0.484083 6_3:+30686485 None:intergenic
CTTAATGGTATTGAAGTCCA+TGG 0.485259 6_3:+30687457 None:intergenic
TTCTAAAACGTTTGTGACGG+CGG 0.497862 6_3:+30692002 None:intergenic
GTTTGTGACGGCGGATGTGT+TGG 0.501453 6_3:+30692011 None:intergenic
TACCATTAAGAACCAAATAG+AGG 0.502647 6_3:-30687444 Msa0947650:CDS
TCAGATGACACAACACAAAT+GGG 0.504337 6_3:-30688488 Msa0947650:intron
GGATCTTGACATCGATGCTC+AGG 0.504434 6_3:-30686411 Msa0947650:intron
GTTACCTCTTCAGCAACTCT+AGG 0.519385 6_3:+30687263 None:intergenic
TTTGTGACGGCGGATGTGTT+GGG 0.522145 6_3:+30692012 None:intergenic
TGACGATCTTAGAAGAGCAT+TGG 0.523515 6_3:-30686483 Msa0947650:CDS
TTTAGAAGAGCTCCGGGAGA+TGG 0.525203 6_3:-30686866 Msa0947650:CDS
AGACCAAGAAGCCTACTTGA+AGG 0.528428 6_3:-30686107 Msa0947650:exon
AAACTCTCCATTAACACGTC+CGG 0.534255 6_3:+30691956 None:intergenic
GTTTGGCCCAATATTACGCC+AGG 0.539374 6_3:-30689759 Msa0947650:intron
TCTCCAAATGACCTTCAAGT+AGG 0.548044 6_3:+30686096 None:intergenic
TTAATGGTATTGAAGTCCAT+GGG 0.548313 6_3:+30687458 None:intergenic
GTCCGGAAGGGAAAGGCGGA+CGG 0.549066 6_3:+30691973 None:intergenic
CCAGTGGATGTAGAGGGCCT+CGG 0.549860 6_3:-30688448 Msa0947650:CDS
CCGAGGCCCTCTACATCCAC+TGG 0.551147 6_3:+30688448 None:intergenic
TCTGCCTAGAGTTGCTGAAG+AGG 0.551885 6_3:-30687267 Msa0947650:intron
AAATGAATAATACATGATCA+AGG 0.557446 6_3:+30685890 None:intergenic
TTCCTGCAGCTTGAGCAGAA+AGG 0.560545 6_3:-30689962 Msa0947650:intron
TGTACATTTAGAAGAGCTCC+GGG 0.571123 6_3:-30686872 Msa0947650:CDS
CTCCATTAACACGTCCGGAA+GGG 0.578961 6_3:+30691961 None:intergenic
TGACACAACACAAATGGGCT+TGG 0.579963 6_3:-30688483 Msa0947650:CDS
AAGTATTAAGAAGCTACAGC+AGG 0.580713 6_3:-30689837 Msa0947650:CDS
GTAGGAAACTAGACGAGAAG+AGG 0.582051 6_3:-30687073 Msa0947650:intron
AATGTCTTCAAAATCAAACT+AGG 0.585216 6_3:+30685935 None:intergenic
TCTTCATCAAACATGGTGGT+TGG 0.587647 6_3:+30686028 None:intergenic
AACTTCGAAGGACAAAGATA+AGG 0.589173 6_3:-30689873 Msa0947650:CDS
TCTCCATTAACACGTCCGGA+AGG 0.594454 6_3:+30691960 None:intergenic
CTTCCAAGCAAATGCTGACG+AGG 0.595881 6_3:-30686435 Msa0947650:CDS
AAGAATTCAGAAAGTATGGA+TGG 0.597311 6_3:-30686195 Msa0947650:CDS
AAAAGGTAACTCAACTTCGA+AGG 0.597781 6_3:-30689885 Msa0947650:CDS
CATAATAATCATTTAAGCCG+AGG 0.601940 6_3:+30688431 None:intergenic
GGCTAGAGACTTGAGTAATG+AGG 0.603532 6_3:-30686992 Msa0947650:intron
ATGCAACCAGTGGATGTAGA+GGG 0.605003 6_3:-30688454 Msa0947650:CDS
AGTTTCTAAAACGTTTGTGA+CGG 0.609736 6_3:+30691999 None:intergenic
TATGCAACCAGTGGATGTAG+AGG 0.613049 6_3:-30688455 Msa0947650:CDS
TTAACACGTCCGGAAGGGAA+AGG 0.615033 6_3:+30691966 None:intergenic
TGCTTCTTGAGCAAATTGCA+TGG 0.615979 6_3:+30687029 None:intergenic
CCAAGCAAATGCTGACGAGG+TGG 0.617413 6_3:-30686432 Msa0947650:CDS
ACATGATCAAGGAGAACCAA+AGG 0.617747 6_3:+30685901 None:intergenic
AAGAGGAAGAAGCTGAAGCA+CGG 0.617972 6_3:-30687056 Msa0947650:CDS
CTAGATCATTGACAAGCCCA+TGG 0.626029 6_3:-30687474 Msa0947650:intron
GGATGCATCACGTAAAGAAG+CGG 0.642141 6_3:-30689816 Msa0947650:CDS
AAGGATGTCTTCATCAAACA+TGG 0.644116 6_3:+30686021 None:intergenic
AAGAAGTGATGTTCATGTGA+TGG 0.648010 6_3:-30687333 Msa0947650:CDS
TGCAGAGTGAGTCTACCTTG+TGG 0.656539 6_3:-30686260 Msa0947650:intron
GGGAAGCTTATGCTGATGTG+AGG 0.671592 6_3:-30687391 Msa0947650:CDS
ACACGTCCGGAAGGGAAAGG+CGG 0.676363 6_3:+30691969 None:intergenic
GATGTCTTCATCAAACATGG+TGG 0.719956 6_3:+30686024 None:intergenic
AACCAAATAGAGGCTAACGA+CGG 0.721366 6_3:-30687434 Msa0947650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGCTTATATATAATAA+GGG + chr6_3:30686379-30686398 None:intergenic 10.0%
!! AAAATAGCTTATATATAATA+AGG + chr6_3:30686380-30686399 None:intergenic 10.0%
!! AAAATATTTAGATTTAAATC+AGG + chr6_3:30689178-30689197 None:intergenic 10.0%
!! ACTTCTATTTAAGAAAATTT+CGG - chr6_3:30689073-30689092 Msa0947650:intron 15.0%
!! TTCTTTCATTAGTATTTATT+AGG + chr6_3:30689936-30689955 None:intergenic 15.0%
!!! AGTAAATTTTTTGAAACAAT+TGG - chr6_3:30689956-30689975 Msa0947650:CDS 15.0%
!! TTTGTATTGGATTAATTAAT+AGG - chr6_3:30689988-30690007 Msa0947650:intron 15.0%
!!! ATGATAGGTTTTTTATTAAT+AGG + chr6_3:30691023-30691042 None:intergenic 15.0%
!! TATGAAATACTTACAAAATT+GGG + chr6_3:30692041-30692060 None:intergenic 15.0%
!! TTATGAAATACTTACAAAAT+TGG + chr6_3:30692042-30692061 None:intergenic 15.0%
!! TGATAGTTTCAAATACTATT+AGG - chr6_3:30686334-30686353 Msa0947650:intron 20.0%
!! GATAAAATCATAATTACATC+CGG + chr6_3:30686693-30686712 None:intergenic 20.0%
!! AACACTAACAATATCATAAA+CGG + chr6_3:30686741-30686760 None:intergenic 20.0%
!! TAGTAGAATTTAACACTTAA+TGG - chr6_3:30686792-30686811 Msa0947650:intron 20.0%
!! AGTAGAATTTAACACTTAAT+GGG - chr6_3:30686793-30686812 Msa0947650:intron 20.0%
!!! AGTTTTAAGTATTGTCAAAT+AGG - chr6_3:30686862-30686881 Msa0947650:CDS 20.0%
!! AATTTCGTTCTATTTAAGAA+AGG - chr6_3:30686977-30686996 Msa0947650:intron 20.0%
!!! TACGATTGTTTTATTTTGTA+TGG - chr6_3:30687745-30687764 Msa0947650:intron 20.0%
!!! TCATTTATTGTTTTTGTTTG+TGG - chr6_3:30688099-30688118 Msa0947650:intron 20.0%
!!! CATTTATTGTTTTTGTTTGT+GGG - chr6_3:30688100-30688119 Msa0947650:intron 20.0%
!!! ATTTATTGTTTTTGTTTGTG+GGG - chr6_3:30688101-30688120 Msa0947650:intron 20.0%
!!! ATAGCATTTTGAAAATATCA+GGG + chr6_3:30688540-30688559 None:intergenic 20.0%
!!! AATAGCATTTTGAAAATATC+AGG + chr6_3:30688541-30688560 None:intergenic 20.0%
!!! CCTTATTTATATTCATGAAA+GGG - chr6_3:30688608-30688627 Msa0947650:intron 20.0%
!! CTTATTTATATTCATGAAAG+GGG - chr6_3:30688609-30688628 Msa0947650:intron 20.0%
!!! ATGGATTATAAAATATCTTC+AGG - chr6_3:30688758-30688777 Msa0947650:intron 20.0%
!! TGGATTATAAAATATCTTCA+GGG - chr6_3:30688759-30688778 Msa0947650:intron 20.0%
!!! GATTCCATTAAATTTTGATT+GGG - chr6_3:30688782-30688801 Msa0947650:intron 20.0%
!!! ATTCCATTAAATTTTGATTG+GGG - chr6_3:30688783-30688802 Msa0947650:intron 20.0%
!! GAAAAAAAAAACTTGAAAGT+TGG + chr6_3:30688877-30688896 None:intergenic 20.0%
!! TATTTAGATTTAAATCAGGA+GGG + chr6_3:30689174-30689193 None:intergenic 20.0%
!! ATATTTAGATTTAAATCAGG+AGG + chr6_3:30689175-30689194 None:intergenic 20.0%
!! TAAATGATTATTATGAGGTA+TGG - chr6_3:30689402-30689421 Msa0947650:intron 20.0%
!! TACATGATTATTATGAGTTA+TGG - chr6_3:30689500-30689519 Msa0947650:intron 20.0%
!! TTACTATGTAAATGTAACAT+TGG + chr6_3:30689548-30689567 None:intergenic 20.0%
!!! TTGGCATATATTTTTTGTAT+TGG - chr6_3:30689975-30689994 Msa0947650:intron 20.0%
!! TTACAAATTGATCAATATTG+TGG - chr6_3:30690643-30690662 Msa0947650:intron 20.0%
!!! GATTTTTTATCAAATTCACA+TGG + chr6_3:30690904-30690923 None:intergenic 20.0%
!! TATAGGCAAAAATATATGAT+AGG + chr6_3:30691038-30691057 None:intergenic 20.0%
!! ATACTTGACTAATATTTACT+AGG - chr6_3:30691125-30691144 Msa0947650:intron 20.0%
!! AAAAAACTATGTTTGACATA+AGG + chr6_3:30691826-30691845 None:intergenic 20.0%
!!! TGTCAAACATAGTTTTTTTA+AGG - chr6_3:30691828-30691847 Msa0947650:intron 20.0%
!! AAATGAATAATACATGATCA+AGG + chr6_3:30691938-30691957 None:intergenic 20.0%
!!! AAAAGTGTAGTATTACATTT+TGG - chr6_3:30691982-30692001 Msa0947650:five_prime_UTR 20.0%
!!! AAATAAAGCTAGAGTGTTTT+CGG - chr6_3:30686414-30686433 Msa0947650:CDS 25.0%
! ATTTAACACTTAATGGGATA+AGG - chr6_3:30686799-30686818 Msa0947650:intron 25.0%
! CAATAAATATGAAGACAAGA+AGG + chr6_3:30687140-30687159 None:intergenic 25.0%
!!! TGTTTGCAGTTTTTTGAAAA+AGG - chr6_3:30687158-30687177 Msa0947650:intron 25.0%
! AATTGGGTAATTTAACACAA+GGG - chr6_3:30687229-30687248 Msa0947650:intron 25.0%
! TGTTATAGCTGTAAAAGATT+TGG - chr6_3:30687618-30687637 Msa0947650:intron 25.0%
!! AGAAGCATATTACATATTTG+AGG + chr6_3:30687842-30687861 None:intergenic 25.0%
! ATAAATGAAAAATAGCTACC+TGG + chr6_3:30688087-30688106 None:intergenic 25.0%
!!! TTTATTGTTTTTGTTTGTGG+GGG - chr6_3:30688102-30688121 Msa0947650:intron 25.0%
!! ATGGTCATGTAATTTTGAAT+TGG - chr6_3:30688247-30688266 Msa0947650:intron 25.0%
! TTATCATGAACAGAAATAGA+TGG + chr6_3:30688280-30688299 None:intergenic 25.0%
! AACAGTTTATAATCATAGAC+TGG + chr6_3:30688318-30688337 None:intergenic 25.0%
! TTTGAAAATATCAGGGTAAA+AGG + chr6_3:30688533-30688552 None:intergenic 25.0%
!!! GCCTTATTTATATTCATGAA+AGG - chr6_3:30688607-30688626 Msa0947650:intron 25.0%
! CCCTTTCATGAATATAAATA+AGG + chr6_3:30688611-30688630 None:intergenic 25.0%
! ACAAAAAAAACTGCTATACT+TGG + chr6_3:30688642-30688661 None:intergenic 25.0%
! GTATAGCAGTTATAGATAAA+TGG - chr6_3:30688673-30688692 Msa0947650:intron 25.0%
! GGATTATAAAATATCTTCAG+GGG - chr6_3:30688760-30688779 Msa0947650:intron 25.0%
!!! GGATTCCATTAAATTTTGAT+TGG - chr6_3:30688781-30688800 Msa0947650:intron 25.0%
! TATCCCCAATCAAAATTTAA+TGG + chr6_3:30688789-30688808 None:intergenic 25.0%
! ATAGTTGAATGTTTGTATGA+AGG - chr6_3:30688814-30688833 Msa0947650:intron 25.0%
!! AAAAAACTTGAAAGTTGGTT+TGG + chr6_3:30688872-30688891 None:intergenic 25.0%
! TATCACATAATTCCAAATGA+GGG + chr6_3:30688926-30688945 None:intergenic 25.0%
! TTATCACATAATTCCAAATG+AGG + chr6_3:30688927-30688946 None:intergenic 25.0%
!! TCAATTTCGTTCTGTATTTT+TGG - chr6_3:30688974-30688993 Msa0947650:intron 25.0%
!! TTTTATGATGATTGTTCTAG+CGG + chr6_3:30689099-30689118 None:intergenic 25.0%
! TTTACATAGTAATGACCTTA+TGG - chr6_3:30689556-30689575 Msa0947650:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr6_3:30690113-30690132 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr6_3:30690126-30690145 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr6_3:30690125-30690144 Msa0947650:intron 25.0%
! ACTCAATTAATAGACACTTA+CGG - chr6_3:30690190-30690209 Msa0947650:intron 25.0%
! GTTCTGTTTATAAAACTGAA+AGG - chr6_3:30690225-30690244 Msa0947650:intron 25.0%
!!! AATCTATTGATTTTTTCAGC+TGG - chr6_3:30690920-30690939 Msa0947650:intron 25.0%
! CTAAGAACAGAAAAATGTAT+AGG + chr6_3:30691055-30691074 None:intergenic 25.0%
!! ATACATTTTTCTGTTCTTAG+AGG - chr6_3:30691055-30691074 Msa0947650:intron 25.0%
!! TACATTTTTCTGTTCTTAGA+GGG - chr6_3:30691056-30691075 Msa0947650:intron 25.0%
!!! TTTCTCAAATTTAGCTTTGT+GGG + chr6_3:30691254-30691273 None:intergenic 25.0%
!!! TTTTCTCAAATTTAGCTTTG+TGG + chr6_3:30691255-30691274 None:intergenic 25.0%
!! AAATAGAATTGTTGTTCCTT+GGG - chr6_3:30691477-30691496 Msa0947650:intron 25.0%
!! AATTACTTCGGTTTGTATAA+TGG - chr6_3:30691503-30691522 Msa0947650:intron 25.0%
! AAAAAAGTTTAATCTCCACA+AGG + chr6_3:30691583-30691602 None:intergenic 25.0%
!!! GAGATTAAACTTTTTTGTCA+GGG - chr6_3:30691587-30691606 Msa0947650:intron 25.0%
!!! CAAACATAGTTTTTTTAAGG+TGG - chr6_3:30691831-30691850 Msa0947650:intron 25.0%
! AATGTCTTCAAAATCAAACT+AGG + chr6_3:30691893-30691912 None:intergenic 25.0%
!! AGTTTCTAAAACGTTTGTGA+CGG + chr6_3:30685829-30685848 None:intergenic 30.0%
! GTTAGTTTCAAAAGTTGATC+AGG - chr6_3:30685916-30685935 Msa0947650:three_prime_UTR 30.0%
! TTTGTGATTGAAAGCGTATT+CGG - chr6_3:30686074-30686093 Msa0947650:three_prime_UTR 30.0%
! AAGCTGTAAACTGTTTTCAT+AGG - chr6_3:30686439-30686458 Msa0947650:CDS 30.0%
! ACTGTTTTCATAGGTTATCT+TGG - chr6_3:30686448-30686467 Msa0947650:CDS 30.0%
AGGTTATCTTGGATAGTTTA+TGG - chr6_3:30686459-30686478 Msa0947650:CDS 30.0%
TATGGTAATAAGCTGAAAAC+AGG - chr6_3:30686477-30686496 Msa0947650:CDS 30.0%
CGTTCTATTTAAGAAAGGAA+AGG - chr6_3:30686982-30687001 Msa0947650:intron 30.0%
GAATTGGGTAATTTAACACA+AGG - chr6_3:30687228-30687247 Msa0947650:intron 30.0%
TTAATTGAGGATAACAGATC+TGG - chr6_3:30687258-30687277 Msa0947650:intron 30.0%
TATCGCAATTTCAACAAGAA+CGG + chr6_3:30687390-30687409 None:intergenic 30.0%
! GTGAACAATCTTTTGCAATA+CGG + chr6_3:30687644-30687663 None:intergenic 30.0%
! CATATTTGAGGTAACTTCTT+GGG + chr6_3:30687830-30687849 None:intergenic 30.0%
! ACATATTTGAGGTAACTTCT+TGG + chr6_3:30687831-30687850 None:intergenic 30.0%
CAAATAGACGATTAACACAT+TGG + chr6_3:30688171-30688190 None:intergenic 30.0%
ATTACATGACCATGTGTAAA+AGG + chr6_3:30688240-30688259 None:intergenic 30.0%
GATTAAAAGCTAGAACATGA+AGG + chr6_3:30688348-30688367 None:intergenic 30.0%
GTTCTTACAAAGAACAGAAA+GGG + chr6_3:30688428-30688447 None:intergenic 30.0%
AGTTCTTACAAAGAACAGAA+AGG + chr6_3:30688429-30688448 None:intergenic 30.0%
ATGATATGTACTATGTAGCA+TGG - chr6_3:30688470-30688489 Msa0947650:CDS 30.0%
!! AAAAATGAGAAGCTTGCTAT+AGG - chr6_3:30688703-30688722 Msa0947650:intron 30.0%
GTGACATAGGTATTATTGAA+TGG - chr6_3:30688739-30688758 Msa0947650:intron 30.0%
!!! TGTATTTTTGGCTGATAAGA+TGG - chr6_3:30688986-30689005 Msa0947650:intron 30.0%
CATAATAATCATTTAAGCCG+AGG + chr6_3:30689397-30689416 None:intergenic 30.0%
CGGCTTAAATGATTATTATG+AGG - chr6_3:30689397-30689416 Msa0947650:intron 30.0%
ATTGTTAATGAACTTCGTTG+AGG - chr6_3:30689464-30689483 Msa0947650:intron 30.0%
GAACATAGAAGAAAACAATG+TGG - chr6_3:30689593-30689612 Msa0947650:intron 30.0%
! ATAATGTCCGTCTTTTCTTT+TGG - chr6_3:30689709-30689728 Msa0947650:intron 30.0%
! TAATGTCCGTCTTTTCTTTT+GGG - chr6_3:30689710-30689729 Msa0947650:intron 30.0%
!! CAGTTTTGTAATGATGAGTT+GGG + chr6_3:30689790-30689809 None:intergenic 30.0%
!!! AAAACTGGCTTTTAAGTTGT+AGG - chr6_3:30689803-30689822 Msa0947650:CDS 30.0%
ATAGAAGAAAAGAGAAGCAA+AGG + chr6_3:30689882-30689901 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr6_3:30690028-30690047 Msa0947650:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr6_3:30690100-30690119 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr6_3:30690151-30690170 Msa0947650:intron 30.0%
AGATTCAGTCACTTAATGAA+GGG + chr6_3:30690294-30690313 None:intergenic 30.0%
AAGATTCAGTCACTTAATGA+AGG + chr6_3:30690295-30690314 None:intergenic 30.0%
! TTAATGGTATTGAAGTCCAT+GGG + chr6_3:30690370-30690389 None:intergenic 30.0%
TACCATTAAGAACCAAATAG+AGG - chr6_3:30690381-30690400 Msa0947650:intron 30.0%
AACTTTACTGGAAAAGTTTG+AGG - chr6_3:30690519-30690538 Msa0947650:intron 30.0%
TTGTCTTAAAAACAACCTCT+TGG - chr6_3:30690696-30690715 Msa0947650:intron 30.0%
! TGAGTAATGAGGTATTCATT+AGG - chr6_3:30690844-30690863 Msa0947650:intron 30.0%
! GAGTAATGAGGTATTCATTA+GGG - chr6_3:30690845-30690864 Msa0947650:intron 30.0%
TTCATTGAGCTGTTCAATAT+GGG - chr6_3:30690877-30690896 Msa0947650:intron 30.0%
!!! ATTTTTTAACAACCATCTCC+CGG + chr6_3:30690974-30690993 None:intergenic 30.0%
AGATGGTTGTTAAAAAATGC+AGG - chr6_3:30690976-30690995 Msa0947650:intron 30.0%
TGAGGAATGTACAAAATGAA+GGG + chr6_3:30691197-30691216 None:intergenic 30.0%
!! TATTTTAGATGATGAGACAG+AGG + chr6_3:30691223-30691242 None:intergenic 30.0%
ACTGAAGAAAAGAGAAATCT+TGG - chr6_3:30691295-30691314 Msa0947650:intron 30.0%
!! TTGGAAGTTTGGATTAGTTT+GGG + chr6_3:30691377-30691396 None:intergenic 30.0%
! CAAATAGAATTGTTGTTCCT+TGG - chr6_3:30691476-30691495 Msa0947650:intron 30.0%
!!! GGAGATTAAACTTTTTTGTC+AGG - chr6_3:30691586-30691605 Msa0947650:intron 30.0%
! AAGAATTCAGAAAGTATGGA+TGG - chr6_3:30691630-30691649 Msa0947650:intron 30.0%
!!! CTTTTTTTCGTTTGTTGTTC+AGG + chr6_3:30691665-30691684 None:intergenic 30.0%
TCAAACTAGGTTACATTTCA+AGG + chr6_3:30691880-30691899 None:intergenic 30.0%
!!! ACATTGTTTTTGTTGTCCTT+TGG - chr6_3:30691908-30691927 Msa0947650:intron 30.0%
! CACTTTTATCAGTCAAACAT+TGG + chr6_3:30691969-30691988 None:intergenic 30.0%
ACTTATTTAAGCTTATCCCC+CGG + chr6_3:30686564-30686583 None:intergenic 35.0%
TTGTCAAATCGAAGCTATAG+CGG - chr6_3:30686759-30686778 Msa0947650:intron 35.0%
AAAGAGATTTCTGCTTGAGT+AGG - chr6_3:30687206-30687225 Msa0947650:intron 35.0%
ATTTCTGCTTGAGTAGGAAT+TGG - chr6_3:30687212-30687231 Msa0947650:intron 35.0%
TTTCTGCTTGAGTAGGAATT+GGG - chr6_3:30687213-30687232 Msa0947650:intron 35.0%
ACAAGGGAATCTCTTAATTG+AGG - chr6_3:30687245-30687264 Msa0947650:intron 35.0%
ATCATATCAACTTGTCTGTG+TGG - chr6_3:30687701-30687720 Msa0947650:intron 35.0%
!!! GTGTGGTTTTAGCTTTTAAG+AGG - chr6_3:30687718-30687737 Msa0947650:intron 35.0%
!! AGTATGCTTTTTATTCGTGC+TGG + chr6_3:30687912-30687931 None:intergenic 35.0%
! AGCACGAATAAAAAGCATAC+TGG - chr6_3:30687911-30687930 Msa0947650:intron 35.0%
AAAAGGTAACTCAACTTCGA+AGG - chr6_3:30687940-30687959 Msa0947650:intron 35.0%
AACTTCGAAGGACAAAGATA+AGG - chr6_3:30687952-30687971 Msa0947650:intron 35.0%
TGCTGTAGCTTCTTAATACT+TGG + chr6_3:30687989-30688008 None:intergenic 35.0%
AAGTATTAAGAAGCTACAGC+AGG - chr6_3:30687988-30688007 Msa0947650:intron 35.0%
GACGATTAACACATTGGTAA+TGG + chr6_3:30688165-30688184 None:intergenic 35.0%
! ACCTTTGTTCCTTTTACACA+TGG - chr6_3:30688228-30688247 Msa0947650:intron 35.0%
ACCATGTGTAAAAGGAACAA+AGG + chr6_3:30688232-30688251 None:intergenic 35.0%
! CTTCACAAAGTACTTATGCA+AGG + chr6_3:30688502-30688521 None:intergenic 35.0%
TGCATAAGTACTTTGTGAAG+TGG - chr6_3:30688502-30688521 Msa0947650:intron 35.0%
!! TGAAAGTTGGTTTGGTAATG+AGG + chr6_3:30688864-30688883 None:intergenic 35.0%
TCTTAAATAGAAGTTCGTCG+CGG + chr6_3:30689067-30689086 None:intergenic 35.0%
CATCTGTCATATCTACAACT+CGG + chr6_3:30689249-30689268 None:intergenic 35.0%
AGTTGTAGATATGACAGATG+AGG - chr6_3:30689249-30689268 Msa0947650:intron 35.0%
TCAGATGACACAACACAAAT+GGG - chr6_3:30689337-30689356 Msa0947650:intron 35.0%
AACAATGCAAAGCGTAACAT+TGG + chr6_3:30689450-30689469 None:intergenic 35.0%
ATGACCTTATGGTAAGTTCT+AGG - chr6_3:30689567-30689586 Msa0947650:intron 35.0%
TGCATATTTCAAACTGATCC+TGG + chr6_3:30689664-30689683 None:intergenic 35.0%
AAAAGACGGACATTATCGAA+TGG + chr6_3:30689705-30689724 None:intergenic 35.0%
CCTGTACCATCTTAGAATTT+GGG - chr6_3:30689759-30689778 Msa0947650:intron 35.0%
!! CCAGTTTTGTAATGATGAGT+TGG + chr6_3:30689791-30689810 None:intergenic 35.0%
CCAACTCATCATTACAAAAC+TGG - chr6_3:30689788-30689807 Msa0947650:CDS 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr6_3:30690033-30690052 None:intergenic 35.0%
! CTTAATGGTATTGAAGTCCA+TGG + chr6_3:30690371-30690390 None:intergenic 35.0%
!! AGCCTCTATTTGGTTCTTAA+TGG + chr6_3:30690386-30690405 None:intergenic 35.0%
GAACTGGATATAAGCATGTT+CGG - chr6_3:30690413-30690432 Msa0947650:intron 35.0%
AACTGGATATAAGCATGTTC+GGG - chr6_3:30690414-30690433 Msa0947650:intron 35.0%
AAGAAGTGATGTTCATGTGA+TGG - chr6_3:30690492-30690511 Msa0947650:intron 35.0%
TGTGATGGCAAAAACTTTAC+TGG - chr6_3:30690507-30690526 Msa0947650:intron 35.0%
TGGAAAAGTTTGAGGAGAAA+TGG - chr6_3:30690527-30690546 Msa0947650:intron 35.0%
GGTCAAAGGAAACAAATAGT+TGG + chr6_3:30690594-30690613 None:intergenic 35.0%
!! GCACTTACTTGTTATCATCT+GGG - chr6_3:30690718-30690737 Msa0947650:intron 35.0%
!! CACTTACTTGTTATCATCTG+GGG - chr6_3:30690719-30690738 Msa0947650:intron 35.0%
! ATCTGGGGTTATTGAATTGT+AGG - chr6_3:30690734-30690753 Msa0947650:intron 35.0%
AGAAGCAGTTCATGCTAAAA+TGG - chr6_3:30690812-30690831 Msa0947650:intron 35.0%
CTTCATTGAGCTGTTCAATA+TGG - chr6_3:30690876-30690895 Msa0947650:intron 35.0%
TCATTGAGCTGTTCAATATG+GGG - chr6_3:30690878-30690897 Msa0947650:intron 35.0%
ATGTACATTTAGAAGAGCTC+CGG - chr6_3:30690952-30690971 Msa0947650:intron 35.0%
!! GAGGGATGTTTTATTGTTCT+AGG - chr6_3:30691074-30691093 Msa0947650:intron 35.0%
CTGAGGAATGTACAAAATGA+AGG + chr6_3:30691198-30691217 None:intergenic 35.0%
!! CTTGGAAGTTTGGATTAGTT+TGG + chr6_3:30691378-30691397 None:intergenic 35.0%
!! TTCCTTGGGTTGAATTACTT+CGG - chr6_3:30691491-30691510 Msa0947650:intron 35.0%
CCAATATACTCGTTAGCATA+TGG + chr6_3:30691538-30691557 None:intergenic 35.0%
CCATATGCTAACGAGTATAT+TGG - chr6_3:30691535-30691554 Msa0947650:intron 35.0%
TACTTTCTGAATTCTTGCTC+TGG + chr6_3:30691626-30691645 None:intergenic 35.0%
GAGCAAGAATTCAGAAAGTA+TGG - chr6_3:30691626-30691645 Msa0947650:intron 35.0%
AAGGATGTCTTCATCAAACA+TGG + chr6_3:30691807-30691826 None:intergenic 35.0%
!! TTCTAAAACGTTTGTGACGG+CGG + chr6_3:30685826-30685845 None:intergenic 40.0%
AAACTCTCCATTAACACGTC+CGG + chr6_3:30685872-30685891 None:intergenic 40.0%
! ACGCATTCAATCAGAAGTGT+GGG + chr6_3:30686154-30686173 None:intergenic 40.0%
! ACGCATTCAATCAGAAGTGT+TGG + chr6_3:30686154-30686173 None:intergenic 40.0%
! TTTTCAAACAGTCTCGCAAG+TGG - chr6_3:30686533-30686552 Msa0947650:CDS 40.0%
TTCCATGAACACGTGTCATA+TGG + chr6_3:30686596-30686615 None:intergenic 40.0%
!! TTCTTATGCGAGTTTGTTGC+CGG - chr6_3:30686671-30686690 Msa0947650:intron 40.0%
AGAGACTCTGATACTCTGTA+TGG + chr6_3:30687019-30687038 None:intergenic 40.0%
TGCACTTGATTTCTTGCTCT+TGG - chr6_3:30687094-30687113 Msa0947650:intron 40.0%
ACTTGATTTCTTGCTCTTGG+TGG - chr6_3:30687097-30687116 Msa0947650:intron 40.0%
CTTGATTTCTTGCTCTTGGT+GGG - chr6_3:30687098-30687117 Msa0947650:intron 40.0%
!!! GATCTGGTTTTCAAAGCCTA+TGG - chr6_3:30687274-30687293 Msa0947650:CDS 40.0%
! TGTCAGAGTATTCAGTCCAT+AGG + chr6_3:30687293-30687312 None:intergenic 40.0%
!! GATCTATTCTGCTGGTTTCA+TGG + chr6_3:30687368-30687387 None:intergenic 40.0%
CATGACTACTTAAGCAGCAA+TGG - chr6_3:30687501-30687520 Msa0947650:intron 40.0%
! TTCCTGTTGTCCTGTTGATT+TGG - chr6_3:30687545-30687564 Msa0947650:intron 40.0%
GCAGAATAAGCCAAATCAAC+AGG + chr6_3:30687558-30687577 None:intergenic 40.0%
TGGCTTATTCTGCTCAAGTT+CGG - chr6_3:30687565-30687584 Msa0947650:intron 40.0%
TGCAATTATTGCTAGCAGCA+AGG - chr6_3:30687672-30687691 Msa0947650:intron 40.0%
CAAGATCTTATACGCCAGTT+TGG - chr6_3:30688049-30688068 Msa0947650:intron 40.0%
TAGCTACCTGGCGTAATATT+GGG + chr6_3:30688075-30688094 None:intergenic 40.0%
ATAGCTACCTGGCGTAATAT+TGG + chr6_3:30688076-30688095 None:intergenic 40.0%
!! AAGCTTGCTATAGGACAAGT+CGG - chr6_3:30688712-30688731 Msa0947650:intron 40.0%
! TTCTTTTTCCACACTGATGC+TGG - chr6_3:30688894-30688913 Msa0947650:intron 40.0%
GGGCTCAATCAATGTACAAA+GGG + chr6_3:30689210-30689229 None:intergenic 40.0%
TGGGCTCAATCAATGTACAA+AGG + chr6_3:30689211-30689230 None:intergenic 40.0%
! GTACATTGATTGAGCCCATT+AGG - chr6_3:30689213-30689232 Msa0947650:intron 40.0%
TCGGACAACTTTCACCTAAT+GGG + chr6_3:30689230-30689249 None:intergenic 40.0%
GTCAGATGACACAACACAAA+TGG - chr6_3:30689336-30689355 Msa0947650:intron 40.0%
! ACATCCACTGGTTGCATAAA+AGG + chr6_3:30689368-30689387 None:intergenic 40.0%
!! CCTTATGGTAAGTTCTAGGT+CGG - chr6_3:30689571-30689590 Msa0947650:intron 40.0%
GCCTGTACCATCTTAGAATT+TGG - chr6_3:30689758-30689777 Msa0947650:intron 40.0%
!! CCCAAATTCTAAGATGGTAC+AGG + chr6_3:30689762-30689781 None:intergenic 40.0%
TGACATGGCCTAAAAAAGGT+GGG + chr6_3:30689832-30689851 None:intergenic 40.0%
GATGTGACATGGCCTAAAAA+AGG + chr6_3:30689836-30689855 None:intergenic 40.0%
AACCAAATAGAGGCTAACGA+CGG - chr6_3:30690391-30690410 Msa0947650:intron 40.0%
CAGAACGAACAATTGGTCAA+AGG + chr6_3:30690608-30690627 None:intergenic 40.0%
TGACCAATTGTTCGTTCTGT+TGG - chr6_3:30690609-30690628 Msa0947650:intron 40.0%
CATCCAACAGAACGAACAAT+TGG + chr6_3:30690615-30690634 None:intergenic 40.0%
CAATTGTTCGTTCTGTTGGA+TGG - chr6_3:30690613-30690632 Msa0947650:intron 40.0%
GATAACAAGTAAGTGCCAAG+AGG + chr6_3:30690714-30690733 None:intergenic 40.0%
!! GGCACTTACTTGTTATCATC+TGG - chr6_3:30690717-30690736 Msa0947650:intron 40.0%
TGCTTCTTGAGCAAATTGCA+TGG + chr6_3:30690799-30690818 None:intergenic 40.0%
TGTACATTTAGAAGAGCTCC+GGG - chr6_3:30690953-30690972 Msa0947650:intron 40.0%
!! ATTTAGCTTTGTGGGAGTGA+CGG + chr6_3:30691246-30691265 None:intergenic 40.0%
!! AATGCTCTTCTAAGATCGTC+AGG + chr6_3:30691343-30691362 None:intergenic 40.0%
! TGACGATCTTAGAAGAGCAT+TGG - chr6_3:30691342-30691361 Msa0947650:intron 40.0%
TCAGCATTTGCTTGGAAGTT+TGG + chr6_3:30691388-30691407 None:intergenic 40.0%
AACCGAAGTAATTCAACCCA+AGG + chr6_3:30691496-30691515 None:intergenic 40.0%
AAGCCTACTTGAAGGTCATT+TGG - chr6_3:30691726-30691745 Msa0947650:intron 40.0%
TCTCCAAATGACCTTCAAGT+AGG + chr6_3:30691732-30691751 None:intergenic 40.0%
GGAGATAACATGCTACTCTT+AGG - chr6_3:30691747-30691766 Msa0947650:intron 40.0%
TCTTCATCAAACATGGTGGT+TGG + chr6_3:30691800-30691819 None:intergenic 40.0%
GATGTCTTCATCAAACATGG+TGG + chr6_3:30691804-30691823 None:intergenic 40.0%
ACATGATCAAGGAGAACCAA+AGG + chr6_3:30691927-30691946 None:intergenic 40.0%
! ACGCATTCGATCAGAAGTGT+CGG + chr6_3:30685985-30686004 None:intergenic 45.0%
ACATGTGTCAGTGTTGTGTC+AGG + chr6_3:30686023-30686042 None:intergenic 45.0%
ACAACACTGACACATGTGTC+TGG - chr6_3:30686026-30686045 Msa0947650:three_prime_UTR 45.0%
! GATTGAAAGCGTATTCGGTG+TGG - chr6_3:30686079-30686098 Msa0947650:three_prime_UTR 45.0%
CACGCATTCAATCAGAAGTG+TGG + chr6_3:30686155-30686174 None:intergenic 45.0%
GATTGAATGCGTGTCTAGTG+TGG - chr6_3:30686254-30686273 Msa0947650:CDS 45.0%
AGACACCAAACACATGTGTC+AGG + chr6_3:30686303-30686322 None:intergenic 45.0%
TGCCATATGACACGTGTTCA+TGG - chr6_3:30686591-30686610 Msa0947650:intron 45.0%
!! GTGTTGTGTCGATTTGTTGC+TGG - chr6_3:30686618-30686637 Msa0947650:intron 45.0%
GCTATAGCACTATAGCGTAG+CGG - chr6_3:30686897-30686916 Msa0947650:intron 45.0%
ACAACCATAACATCGCATGC+CGG - chr6_3:30686927-30686946 Msa0947650:intron 45.0%
GAGTCTCAACTATGAACCTG+TGG - chr6_3:30687061-30687080 Msa0947650:CDS 45.0%
AGTGCACAAAACGAATCCAC+AGG + chr6_3:30687080-30687099 None:intergenic 45.0%
!! TCTTGGTGGGTTCTTGATCT+CGG - chr6_3:30687111-30687130 Msa0947650:intron 45.0%
!! ACAGCTGAGAGTGCTTCTTT+AGG + chr6_3:30687333-30687352 None:intergenic 45.0%
ACTCTCAGCTGTCAACAACA+AGG - chr6_3:30687341-30687360 Msa0947650:CDS 45.0%
CAAGAACGGATCTATTCTGC+TGG + chr6_3:30687376-30687395 None:intergenic 45.0%
AAGTGTCCAGAGAAGCTACA+GGG + chr6_3:30687452-30687471 None:intergenic 45.0%
AGCCAAATCAACAGGACAAC+AGG + chr6_3:30687550-30687569 None:intergenic 45.0%
AAGCATACTGGCACGTCAAA+AGG - chr6_3:30687923-30687942 Msa0947650:intron 45.0%
GGATGCATCACGTAAAGAAG+CGG - chr6_3:30688009-30688028 Msa0947650:intron 45.0%
ACAAGTCGGAGTAGTGACAT+AGG - chr6_3:30688726-30688745 Msa0947650:intron 45.0%
CTCGGACAACTTTCACCTAA+TGG + chr6_3:30689231-30689250 None:intergenic 45.0%
! TGACACAACACAAATGGGCT+TGG - chr6_3:30689342-30689361 Msa0947650:intron 45.0%
!! TTGGCCTTTTATGCAACCAG+TGG - chr6_3:30689361-30689380 Msa0947650:intron 45.0%
TATGCAACCAGTGGATGTAG+AGG - chr6_3:30689370-30689389 Msa0947650:intron 45.0%
ATGCAACCAGTGGATGTAGA+GGG - chr6_3:30689371-30689390 Msa0947650:intron 45.0%
CCGACCTAGAACTTACCATA+AGG + chr6_3:30689574-30689593 None:intergenic 45.0%
AACTTCTTGAGACAACCTCG+TGG - chr6_3:30689625-30689644 Msa0947650:intron 45.0%
TTCAAACTGATCCTGGTAGC+AGG + chr6_3:30689657-30689676 None:intergenic 45.0%
TGGCTGCCCAAAAGAAAAGA+CGG + chr6_3:30689719-30689738 None:intergenic 45.0%
CCAAACCACTAGGCAGAATA+TGG + chr6_3:30689739-30689758 None:intergenic 45.0%
CCATATTCTGCCTAGTGGTT+TGG - chr6_3:30689736-30689755 Msa0947650:intron 45.0%
!!! GTAGGATGCCCACCTTTTTT+AGG - chr6_3:30689821-30689840 Msa0947650:CDS 45.0%
GTGACATGGCCTAAAAAAGG+TGG + chr6_3:30689833-30689852 None:intergenic 45.0%
GTCTCGCATTAGATGTGACA+TGG + chr6_3:30689847-30689866 None:intergenic 45.0%
CTAGATCATTGACAAGCCCA+TGG - chr6_3:30690351-30690370 Msa0947650:intron 45.0%
! TTCCGTCGTTAGCCTCTATT+TGG + chr6_3:30690396-30690415 None:intergenic 45.0%
AGCTTATGCTGATGTGAGGT+TGG - chr6_3:30690438-30690457 Msa0947650:intron 45.0%
GTTACCTCTTCAGCAACTCT+AGG + chr6_3:30690565-30690584 None:intergenic 45.0%
GTAGGAAACTAGACGAGAAG+AGG - chr6_3:30690752-30690771 Msa0947650:intron 45.0%
AAGAGGAAGAAGCTGAAGCA+CGG - chr6_3:30690769-30690788 Msa0947650:intron 45.0%
GGCTAGAGACTTGAGTAATG+AGG - chr6_3:30690833-30690852 Msa0947650:intron 45.0%
AGACCAAGAAGCCTACTTGA+AGG - chr6_3:30691718-30691737 Msa0947650:intron 45.0%
TGACCTTCAAGTAGGCTTCT+TGG + chr6_3:30691724-30691743 None:intergenic 45.0%
GGCGGATGTGTTGGGTTTAA+TGG + chr6_3:30685808-30685827 None:intergenic 50.0%
TTTGTGACGGCGGATGTGTT+GGG + chr6_3:30685816-30685835 None:intergenic 50.0%
TTAACACGTCCGGAAGGGAA+AGG + chr6_3:30685862-30685881 None:intergenic 50.0%
TTCCCTTCCGGACGTGTTAA+TGG - chr6_3:30685862-30685881 Msa0947650:three_prime_UTR 50.0%
CTCCATTAACACGTCCGGAA+GGG + chr6_3:30685867-30685886 None:intergenic 50.0%
TCTCCATTAACACGTCCGGA+AGG + chr6_3:30685868-30685887 None:intergenic 50.0%
GTCAGTGTTGTGTCAGGTGT+GGG + chr6_3:30686017-30686036 None:intergenic 50.0%
TGTCAGTGTTGTGTCAGGTG+TGG + chr6_3:30686018-30686037 None:intergenic 50.0%
CGTACACGAAGCACATGTGT+CGG + chr6_3:30686210-30686229 None:intergenic 50.0%
CCAAACACATGTGTCAGGTG+TGG + chr6_3:30686298-30686317 None:intergenic 50.0%
CCACACCTGACACATGTGTT+TGG - chr6_3:30686295-30686314 Msa0947650:intron 50.0%
AGTCTCGCAAGTGGTTATGC+CGG - chr6_3:30686542-30686561 Msa0947650:CDS 50.0%
CACCAACAAGACCTAGAGAC+CGG + chr6_3:30686949-30686968 None:intergenic 50.0%
CAAGTGTCCAGAGAAGCTAC+AGG + chr6_3:30687453-30687472 None:intergenic 50.0%
TTCCTGCAGCTTGAGCAGAA+AGG - chr6_3:30687863-30687882 Msa0947650:intron 50.0%
TCCTGCAGCTTGAGCAGAAA+GGG - chr6_3:30687864-30687883 Msa0947650:intron 50.0%
GGCGTAATATTGGGCCAAAC+TGG + chr6_3:30688066-30688085 None:intergenic 50.0%
GTTTGGCCCAATATTACGCC+AGG - chr6_3:30688066-30688085 Msa0947650:intron 50.0%
! TTGTTTGTGGGGGTGTGCAT+TGG - chr6_3:30688112-30688131 Msa0947650:intron 50.0%
ATGGTACAGGCCAAACCACT+AGG + chr6_3:30689749-30689768 None:intergenic 50.0%
ATAGAGGCTAACGACGGAAC+TGG - chr6_3:30690397-30690416 Msa0947650:intron 50.0%
GGGAAGCTTATGCTGATGTG+AGG - chr6_3:30690434-30690453 Msa0947650:intron 50.0%
TCTGCCTAGAGTTGCTGAAG+AGG - chr6_3:30690558-30690577 Msa0947650:intron 50.0%
TTTAGAAGAGCTCCGGGAGA+TGG - chr6_3:30690959-30690978 Msa0947650:intron 50.0%
!! ATGATGAGACAGAGGCACTG+AGG + chr6_3:30691215-30691234 None:intergenic 50.0%
CTTCCAAGCAAATGCTGACG+AGG - chr6_3:30691390-30691409 Msa0947650:intron 50.0%
GGATCTTGACATCGATGCTC+AGG - chr6_3:30691414-30691433 Msa0947650:intron 50.0%
TGCAGAGTGAGTCTACCTTG+TGG - chr6_3:30691565-30691584 Msa0947650:intron 50.0%
GTTTGTGACGGCGGATGTGT+TGG + chr6_3:30685817-30685836 None:intergenic 55.0%
!! GTCGGTGTTGTGTCAGGTGT+GGG + chr6_3:30686186-30686205 None:intergenic 55.0%
!! TGTCGGTGTTGTGTCAGGTG+TGG + chr6_3:30686187-30686206 None:intergenic 55.0%
! CGAAGCACATGTGTCGGTGT+CGG + chr6_3:30686204-30686223 None:intergenic 55.0%
GTCTCGCAAGTGGTTATGCC+GGG - chr6_3:30686543-30686562 Msa0947650:CDS 55.0%
TCTCGCAAGTGGTTATGCCG+GGG - chr6_3:30686544-30686563 Msa0947650:intron 55.0%
GAGACCGGCATGCGATGTTA+TGG + chr6_3:30686934-30686953 None:intergenic 55.0%
AACATCGCATGCCGGTCTCT+AGG - chr6_3:30686935-30686954 Msa0947650:intron 55.0%
! TGCCGGTCTCTAGGTCTTGT+TGG - chr6_3:30686944-30686963 Msa0947650:intron 55.0%
CCAGAGAAGCTACAGGGACA+CGG + chr6_3:30687446-30687465 None:intergenic 55.0%
TCCCTTTCTGCTCAAGCTGC+AGG + chr6_3:30687868-30687887 None:intergenic 55.0%
TGCTGGCGATTGCCCTCATT+TGG - chr6_3:30688911-30688930 Msa0947650:intron 55.0%
GGCAGCCATATTCTGCCTAG+TGG - chr6_3:30689731-30689750 Msa0947650:intron 55.0%
CCACCTCGTCAGCATTTGCT+TGG + chr6_3:30691396-30691415 None:intergenic 55.0%
CCAAGCAAATGCTGACGAGG+TGG - chr6_3:30691393-30691412 Msa0947650:intron 55.0%
ATCCGTCCGCCTTTCCCTTC+CGG - chr6_3:30685850-30685869 Msa0947650:three_prime_UTR 60.0%
ACACGTCCGGAAGGGAAAGG+CGG + chr6_3:30685859-30685878 None:intergenic 60.0%
!! GTCGGTGTCGGTGTTGTGTC+AGG + chr6_3:30686192-30686211 None:intergenic 60.0%
CTCGCAAGTGGTTATGCCGG+GGG - chr6_3:30686545-30686564 Msa0947650:intron 60.0%
CCGTGTCCCTGTAGCTTCTC+TGG - chr6_3:30687443-30687462 Msa0947650:CDS 60.0%
GGCAATCGCCAGCATCAGTG+TGG + chr6_3:30688905-30688924 None:intergenic 60.0%
CCAGTGGATGTAGAGGGCCT+CGG - chr6_3:30689377-30689396 Msa0947650:intron 60.0%
! GGTAGCAGGCATTGTCCACG+AGG + chr6_3:30689643-30689662 None:intergenic 60.0%
CGTGGACAATGCCTGCTACC+AGG - chr6_3:30689643-30689662 Msa0947650:intron 60.0%
GTCCGGAAGGGAAAGGCGGA+CGG + chr6_3:30685855-30685874 None:intergenic 65.0%
! GTGGGGGTGTGCATTGGTCG+TGG - chr6_3:30688118-30688137 Msa0947650:intron 65.0%
CCGAGGCCCTCTACATCCAC+TGG + chr6_3:30689380-30689399 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 30685783 30692064 30685783 ID=Msa0947650;Name=Msa0947650
chr6_3 mRNA 30685783 30692064 30685783 ID=Msa0947650-mRNA-1;Parent=Msa0947650;Name=Msa0947650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|1|1|1|0.85|0.87|8|327|350
chr6_3 exon 30685783 30686277 30685783 ID=Msa0947650-mRNA-1:exon:8144;Parent=Msa0947650-mRNA-1
chr6_3 exon 30686412 30686562 30686412 ID=Msa0947650-mRNA-1:exon:8143;Parent=Msa0947650-mRNA-1
chr6_3 exon 30686850 30686908 30686850 ID=Msa0947650-mRNA-1:exon:8142;Parent=Msa0947650-mRNA-1
chr6_3 exon 30686993 30687091 30686993 ID=Msa0947650-mRNA-1:exon:8141;Parent=Msa0947650-mRNA-1
chr6_3 exon 30687268 30687492 30687268 ID=Msa0947650-mRNA-1:exon:8140;Parent=Msa0947650-mRNA-1
chr6_3 exon 30688429 30688506 30688429 ID=Msa0947650-mRNA-1:exon:8139;Parent=Msa0947650-mRNA-1
chr6_3 exon 30689760 30689975 30689760 ID=Msa0947650-mRNA-1:exon:8138;Parent=Msa0947650-mRNA-1
chr6_3 exon 30691910 30692064 30691910 ID=Msa0947650-mRNA-1:exon:8137;Parent=Msa0947650-mRNA-1
chr6_3 five_prime_UTR 30691967 30692064 30691967 ID=Msa0947650-mRNA-1:five_prime_utr;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30691910 30691966 30691910 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30689760 30689975 30689760 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30688429 30688506 30688429 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30687268 30687492 30687268 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30686993 30687091 30686993 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30686850 30686908 30686850 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30686412 30686562 30686412 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 CDS 30686110 30686277 30686110 ID=Msa0947650-mRNA-1:cds;Parent=Msa0947650-mRNA-1
chr6_3 three_prime_UTR 30685783 30686109 30685783 ID=Msa0947650-mRNA-1:three_prime_utr;Parent=Msa0947650-mRNA-1
Gene Sequence

>Msa0947650

ATGGAGAGTTTCAACTTCAAGCATCGCGTTGATGAGTTAGTTTCAAAAGTTGATCAGCTTGAGCAGAAAGGGAATGAGATAGATAGTTTTTTCTCCAGCACGAATAAAAAGCATACTGGCACGTCAAAAGGTAACTCAACTTCGAAGGACAAAGATAAGGAGAAACATGTTCCAAGTATTAAGAAGCTACAGCAGGATGCATCACGTAAAGAAGCGGCTGCTCAGAAAAGAATGCAAGATCTTATACGCCAGTTTGGCCCAATATTACGCCAGATGACACAACACAAATGGGCTTGGCCTTTTATGCAACCAGTGGATGTAGAGGGCCTCGGCTTAAATGATTATTATGAGATCATTGACAAGCCCATGGACTTCAATACCATTAAGAACCAAATAGAGGCTAACGACGGAACTGGATATAAGCATGTTCGGGAAGCTTATGCTGATGTGAGGTTGGTTTTCAAAAATGCTATGAAATATAATGACGAAAGAAGTGATGTTCATGTGATGGCAAAAACTTTACTGGAAAAGTTTGAGGAGAAATGGTTGCAATTTCTGCCTAGAGTTGCTGAAGAGGAAACTAGACGAGAAGAGGAAGAAGCTGAAGCACGGTTAGCCATGCAATTTGCTCAAGAAGCAGTTCATGCTAAAATGGCTAGAGACTTGAGTAATGAGCTGGATGAAGTTGATGTACATTTAGAAGAGCTCCGGGAGATGGTTGTTAAAAAATGCAGAAAAATGTCAACTGAAGAAAAGAGAAATCTTGGAATTGCTCTCACGAAACTGTCTCCTGACGATCTTAGAAGAGCATTGGATATTGTTGCCCAAACTAATCCAAACTTCCAAGCAAATGCTGACGAGGTGGATCTTGACATCGATGCTCAGAGTGAGTCTACCTTGTGGAGATTAAACTTTTTTGTCAGGGATGCTCTTGAAGTCCAGAGCAAGAATTCAGAAAGTATGGATGGCGATGAAAACCTGAACAACAAACGAAAAAAAGAATTATGCGATGCTGTTGCAAATGTTTCGAAGAAGACCAAGAAGCCTACTTGA

Protein sequence

>Msa0947650

MESFNFKHRVDELVSKVDQLEQKGNEIDSFFSSTNKKHTGTSKGNSTSKDKDKEKHVPSIKKLQQDASRKEAAAQKRMQDLIRQFGPILRQMTQHKWAWPFMQPVDVEGLGLNDYYEIIDKPMDFNTIKNQIEANDGTGYKHVREAYADVRLVFKNAMKYNDERSDVHVMAKTLLEKFEEKWLQFLPRVAEEETRREEEEAEARLAMQFAQEAVHAKMARDLSNELDEVDVHLEELREMVVKKCRKMSTEEKRNLGIALTKLSPDDLRRALDIVAQTNPNFQANADEVDLDIDAQSESTLWRLNFFVRDALEVQSKNSESMDGDENLNNKRKKELCDAVANVSKKTKKPT*