AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1432700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432700 MtrunA17_Chr4g0031531 100.000 93 0 0 1 93 1 93 1.98e-66 194
Msa1432700 MtrunA17_Chr4g0009801 59.140 93 38 0 1 93 1 93 1.75e-40 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432700 AT3G46560.1 78.495 93 20 0 1 93 1 93 4.58e-51 155

Find 27 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATTATACGCAGTGATTT+AGG 0.125954 tig0027146:-21358 Msa1432700:intergenic
CAAAAGCATGATTGCTGATA+TGG 0.238381 tig0027146:+21396 Msa1432700:CDS
TCTTCTTCCACACTTGAGTT+AGG 0.270806 tig0027146:+21296 Msa1432700:five_prime_UTR
CGATTATACGCAGTGATTTA+GGG 0.278105 tig0027146:-21357 Msa1432700:intergenic
TATAATCGTTCGATCCAAAA+TGG 0.326606 tig0027146:+21372 Msa1432700:exon
AACCTCACCTGTCACGGATT+TGG 0.342119 tig0027146:-21471 Msa1432700:intergenic
CTTCTTCCACACTTGAGTTA+GGG 0.373451 tig0027146:+21297 Msa1432700:five_prime_UTR
TGAGTTAGGGTTTATCTTTA+CGG 0.378081 tig0027146:+21310 Msa1432700:five_prime_UTR
CCAGGTTATTATACATTCTC+AGG 0.398941 tig0027146:-24838 Msa1432700:intergenic
AATCTTGAGTTGCAGCTCCT+TGG 0.400935 tig0027146:-25000 Msa1432700:intergenic
ATTCTTTGTTTATCAGCCTC+TGG 0.451877 tig0027146:-21427 Msa1432700:intergenic
AGAGGCTGATAAACAAAGAA+TGG 0.503860 tig0027146:+21429 Msa1432700:CDS
ATCAGCTCCAAATCCGTGAC+AGG 0.514968 tig0027146:+21464 Msa1432700:CDS
CTCTGCACATCTTCGAACAC+AGG 0.526331 tig0027146:-24927 Msa1432700:intergenic
TTTGGGAACCTCACCTGTCA+CGG 0.540460 tig0027146:-21477 Msa1432700:intergenic
CTGAAGCACTCTATGCGTGT+TGG 0.545186 tig0027146:+24937 Msa1432700:CDS
GATTTGGAGCTGATCGATCA+TGG 0.557131 tig0027146:-21455 Msa1432700:intergenic
CCTGAGAATGTATAATAACC+TGG 0.571370 tig0027146:+24819 Msa1432700:CDS
CATGAAAGCATCTCTCCACC+AGG 0.576768 tig0027146:-24856 Msa1432700:intergenic
ACTCTATGCGTGTTGGCATG+AGG 0.597417 tig0027146:+24944 Msa1432700:CDS
TAAATCCCTGCAAAAGCAAG+AGG 0.610554 tig0027146:+24882 Msa1432700:CDS
GATAAACCCTAACTCAAGTG+TGG 0.619830 tig0027146:-21303 Msa1432700:intergenic
AGGTTTGCTGAGCTCAACCA+AGG 0.659807 tig0027146:+24964 Msa1432700:CDS
GAGATGCTTTCATGATTGTG+TGG 0.661772 tig0027146:+24846 Msa1432700:CDS
AAGAAGATGATATATATACT+AGG 0.665897 tig0027146:-21280 Msa1432700:intergenic
TGATATGGAAAATCTTCCAG+AGG 0.691125 tig0027146:+21411 Msa1432700:CDS
GAGAATGTATAATAACCTGG+TGG 0.692374 tig0027146:+24822 Msa1432700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATGTTATTTTTATTTTTT+TGG + tig0027146:22376-22395 Msa1432700:intron 10.0%
!!! TCATATATATTTTAAGATAT+AGG + tig0027146:22405-22424 Msa1432700:intron 10.0%
!! TAATAAATTAAGATTTAAAC+TGG + tig0027146:22689-22708 Msa1432700:intron 10.0%
!!! AGATTAATTTTTCAAATTTT+TGG + tig0027146:22722-22741 Msa1432700:intron 10.0%
!!! GATTAATTTTTCAAATTTTT+GGG + tig0027146:22723-22742 Msa1432700:intron 10.0%
!! TAATTTATTAGAACTTATAA+CGG - tig0027146:24613-24632 Msa1432700:intergenic 10.0%
!!! ATAATGTGTTGAATTTATTT+TGG + tig0027146:21644-21663 Msa1432700:intron 15.0%
!!! TTGAATTTATTTTGGAATTT+GGG + tig0027146:21652-21671 Msa1432700:intron 15.0%
!! ATATAATGTTCTATTTAATG+TGG + tig0027146:22030-22049 Msa1432700:intron 15.0%
!! CTTAATTTATTAGACTTTAT+TGG - tig0027146:22681-22700 Msa1432700:intergenic 15.0%
!! ACATTAAATAGATCATTAAA+CGG - tig0027146:23199-23218 Msa1432700:intergenic 15.0%
!!! TGAATCTTTTTTAAAATTTG+AGG + tig0027146:23662-23681 Msa1432700:intron 15.0%
!! AATAATTTGAGCTTATTTAT+TGG - tig0027146:24437-24456 Msa1432700:intergenic 15.0%
!! AAGAAGATGATATATATACT+AGG - tig0027146:21283-21302 Msa0512680:intergenic 20.0%
!! AAAAAAACCTAAACTTTACA+AGG - tig0027146:21594-21613 Msa1432700:intergenic 20.0%
!!! GTTGAATTTATTTTGGAATT+TGG + tig0027146:21651-21670 Msa1432700:intron 20.0%
!!! TGAATTTATTTTGGAATTTG+GGG + tig0027146:21653-21672 Msa1432700:intron 20.0%
!!! CATCGTAATTTGTAAATAAT+TGG + tig0027146:21679-21698 Msa1432700:intron 20.0%
!! TTGGTTTCATAAAATATTAG+TGG + tig0027146:22565-22584 Msa1432700:intron 20.0%
!!! TTGAATCTGTTTTTATATTG+AGG + tig0027146:22786-22805 Msa1432700:intron 20.0%
!!! TGAATCTGTTTTTATATTGA+GGG + tig0027146:22787-22806 Msa1432700:intron 20.0%
!!! CATTTTTGTTTTTGGATAAT+AGG + tig0027146:23021-23040 Msa1432700:intron 20.0%
!! GTTTAATGATCTATTTAATG+TGG + tig0027146:23198-23217 Msa1432700:intron 20.0%
!!! GCTTTATTATTTACTCATTT+TGG + tig0027146:23485-23504 Msa1432700:intron 20.0%
!!! CTTTTTTTTCTTTCTTTTGT+TGG + tig0027146:23619-23638 Msa1432700:intron 20.0%
!! TCAATATAGTACTTTACTTA+GGG - tig0027146:24473-24492 Msa1432700:intergenic 20.0%
!!! ATTTTACATATGACTTTGTT+AGG + tig0027146:24666-24685 Msa1432700:intron 20.0%
!!! TTTTACATATGACTTTGTTA+GGG + tig0027146:24667-24686 Msa1432700:intron 20.0%
!! TTATTGCTTCATTACATTAT+GGG + tig0027146:24697-24716 Msa1432700:intron 20.0%
!! AAAAACGAAGCAATGATTTT+GGG - tig0027146:21497-21516 Msa1432700:intergenic 25.0%
!! AAAAAACGAAGCAATGATTT+TGG - tig0027146:21498-21517 Msa1432700:intergenic 25.0%
! ATTTCTACCTTGTAAAGTTT+AGG + tig0027146:21584-21603 Msa1432700:intron 25.0%
!!! TTTTTTTCTTTTTTCCCTGT+TGG + tig0027146:21610-21629 Msa1432700:intron 25.0%
! ATAGACAACAAAAATCAATG+TGG - tig0027146:22012-22031 Msa1432700:intergenic 25.0%
! ACTTCAATTGTTATGACTTA+CGG + tig0027146:22236-22255 Msa1432700:intron 25.0%
!!! CTTCTAATGAACTAGTTTTT+GGG - tig0027146:22494-22513 Msa1432700:intergenic 25.0%
! TAAAATATTAGTGGTGTGTT+TGG + tig0027146:22574-22593 Msa1432700:intron 25.0%
! AAAATATTAGTGGTGTGTTT+GGG + tig0027146:22575-22594 Msa1432700:intron 25.0%
! TCATGCTAATTTATAAGTTG+CGG + tig0027146:22812-22831 Msa1432700:intron 25.0%
!! AATTTAATGAACTAGTCTCT+GGG - tig0027146:23134-23153 Msa1432700:intergenic 25.0%
!! AGAGACTAGTTCATTAAATT+GGG + tig0027146:23134-23153 Msa1432700:intron 25.0%
! TTCATTCATCTATCACTATT+TGG + tig0027146:23302-23321 Msa1432700:intron 25.0%
! TATACCTTAATACAGTCTAT+AGG + tig0027146:23328-23347 Msa1432700:intron 25.0%
! GTAAATAATAAAGCTCAATG+TGG - tig0027146:23479-23498 Msa1432700:intergenic 25.0%
! AAATAAATGTACAAACTTCG+AGG - tig0027146:23570-23589 Msa1432700:intergenic 25.0%
!!! TTTTAAAATTTGAGGCTTCA+TGG + tig0027146:23670-23689 Msa1432700:intron 25.0%
!! CAAAATTTACCACCATTTTA+AGG - tig0027146:23730-23749 Msa1432700:intergenic 25.0%
!!! TTTTAAGGAGAACATCAATA+TGG - tig0027146:23773-23792 Msa1432700:intergenic 25.0%
! CAAATTATCAACATGTCATA+AGG + tig0027146:24369-24388 Msa1432700:intron 25.0%
! CTCAATATAGTACTTTACTT+AGG - tig0027146:24474-24493 Msa1432700:intergenic 25.0%
! GTTATTGCTTCATTACATTA+TGG + tig0027146:24696-24715 Msa1432700:intron 25.0%
! TATTGCTTCATTACATTATG+GGG + tig0027146:24698-24717 Msa1432700:intron 25.0%
TGAGTTAGGGTTTATCTTTA+CGG + tig0027146:21310-21329 Msa1432700:five_prime_UTR 30.0%
!!! TGATTTAGGGTTTTGAGATT+GGG - tig0027146:21347-21366 Msa1432700:intergenic 30.0%
TATAATCGTTCGATCCAAAA+TGG + tig0027146:21372-21391 Msa1432700:exon 30.0%
! AATCATGCTTTTGTCCATTT+TGG - tig0027146:21389-21408 Msa1432700:intergenic 30.0%
TATGCTAATACAAACCAACA+GGG - tig0027146:21627-21646 Msa1432700:intergenic 30.0%
TTATGCTAATACAAACCAAC+AGG - tig0027146:21628-21647 Msa1432700:intergenic 30.0%
!!! TGTCATGTTTTTTGGAGAAT+AGG + tig0027146:21858-21877 Msa1432700:intron 30.0%
! ATTCATCGATCAGTATTTTG+TGG + tig0027146:22133-22152 Msa1432700:intron 30.0%
TGTGAGTTAGGATACAAAAA+GGG - tig0027146:22210-22229 Msa1432700:intergenic 30.0%
TTGTGAGTTAGGATACAAAA+AGG - tig0027146:22211-22230 Msa1432700:intergenic 30.0%
!!! CCTTCTAATGAACTAGTTTT+TGG - tig0027146:22495-22514 Msa1432700:intergenic 30.0%
CCAAAAACTAGTTCATTAGA+AGG + tig0027146:22492-22511 Msa1432700:intron 30.0%
AAAACTCAATGTGGTACTTA+AGG - tig0027146:22530-22549 Msa1432700:intergenic 30.0%
!!! GTTAGTTTTTGTTCTTCTGT+TGG + tig0027146:22745-22764 Msa1432700:intron 30.0%
CATGCTAATTTATAAGTTGC+GGG + tig0027146:22813-22832 Msa1432700:intron 30.0%
!! TTTTAAGGAGAACGTAACTA+TGG - tig0027146:22882-22901 Msa1432700:intergenic 30.0%
!!! GTAGCTGTCATTTTTGTTTT+TGG + tig0027146:23013-23032 Msa1432700:intron 30.0%
!! GTCTCTGTCTAAGATTTTTA+TGG + tig0027146:23081-23100 Msa1432700:intron 30.0%
!! TCTGTCTAAGATTTTTATGG+TGG + tig0027146:23084-23103 Msa1432700:intron 30.0%
! CAATTTAATGAACTAGTCTC+TGG - tig0027146:23135-23154 Msa1432700:intergenic 30.0%
! CAGAGACTAGTTCATTAAAT+TGG + tig0027146:23133-23152 Msa1432700:intron 30.0%
AAAGTGGTAATTAAACCATG+AGG - tig0027146:23164-23183 Msa1432700:intergenic 30.0%
ACGGATAAGAAAAATCAAAG+TGG - tig0027146:23180-23199 Msa1432700:intergenic 30.0%
TCTACCTATAGACTGTATTA+AGG - tig0027146:23335-23354 Msa1432700:intergenic 30.0%
! ATAGTGTTTTCATTGAGAGT+TGG - tig0027146:23370-23389 Msa1432700:intergenic 30.0%
AGTTATGACTTAAGCCAATA+TGG + tig0027146:23398-23417 Msa1432700:intron 30.0%
!! TTGGTTTGTATTAGCATTAC+AGG + tig0027146:23638-23657 Msa1432700:intron 30.0%
! TTTTGATGTCCTCCTTAAAA+TGG + tig0027146:23715-23734 Msa1432700:intron 30.0%
!! AATTTACCACCATTTTAAGG+AGG - tig0027146:23727-23746 Msa1432700:intergenic 30.0%
AGAAACATTCAAAAGTCACA+CGG - tig0027146:23797-23816 Msa1432700:intergenic 30.0%
! TGACTTTTGAATGTTTCTTC+TGG + tig0027146:23799-23818 Msa1432700:intron 30.0%
CATTAGATGAAGGCTTAATT+AGG + tig0027146:23909-23928 Msa1432700:intron 30.0%
TTGTGCTTTCATTAAGAGTT+AGG - tig0027146:24108-24127 Msa1432700:intergenic 30.0%
TGAAGTTGTTTATCCAAACA+AGG - tig0027146:24210-24229 Msa1432700:intergenic 30.0%
TTATTTCCATAAGTTGTCCA+GGG - tig0027146:24332-24351 Msa1432700:intergenic 30.0%
CTTTCTTATCTACTCAATGT+GGG + tig0027146:24494-24513 Msa1432700:intron 30.0%
!!! GTGATTTAGGGTTTTGAGAT+TGG - tig0027146:21348-21367 Msa1432700:intergenic 35.0%
CGATTATACGCAGTGATTTA+GGG - tig0027146:21360-21379 Msa1432700:intergenic 35.0%
ACGATTATACGCAGTGATTT+AGG - tig0027146:21361-21380 Msa1432700:intergenic 35.0%
! CAAAAGCATGATTGCTGATA+TGG + tig0027146:21396-21415 Msa1432700:CDS 35.0%
TGATATGGAAAATCTTCCAG+AGG + tig0027146:21411-21430 Msa1432700:CDS 35.0%
! ATTCTTTGTTTATCAGCCTC+TGG - tig0027146:21430-21449 Msa1432700:intergenic 35.0%
AGAGGCTGATAAACAAAGAA+TGG + tig0027146:21429-21448 Msa1432700:CDS 35.0%
AATAAATGTACCCCCTTTGA+GGG - tig0027146:21562-21581 Msa1432700:intergenic 35.0%
AAATAAATGTACCCCCTTTG+AGG - tig0027146:21563-21582 Msa1432700:intergenic 35.0%
!! TTTTAAGGAGAACATCACTC+TGG - tig0027146:21752-21771 Msa1432700:intergenic 35.0%
!!! CAATAGTCACACTGGTTTTA+AGG - tig0027146:21767-21786 Msa1432700:intergenic 35.0%
! TGACTATTGAATGTTGCTTC+TGG + tig0027146:21778-21797 Msa1432700:intron 35.0%
!!! CTTGTAGCTGTCATGTTTTT+TGG + tig0027146:21850-21869 Msa1432700:intron 35.0%
! ATGCTGTCTTTTAGTACCTT+TGG + tig0027146:21896-21915 Msa1432700:intron 35.0%
! TGCTGTCTTTTAGTACCTTT+GGG + tig0027146:21897-21916 Msa1432700:intron 35.0%
CATCAAACTAACTAGTCCAT+GGG - tig0027146:21974-21993 Msa1432700:intergenic 35.0%
!! CATGGACTAGTTAGTTTGAT+GGG + tig0027146:21973-21992 Msa1432700:intron 35.0%
!! TTATAGACATTGGCTCATAG+AGG - tig0027146:22073-22092 Msa1432700:intergenic 35.0%
CTATGAGCCAATGTCTATAA+CGG + tig0027146:22073-22092 Msa1432700:intron 35.0%
TGAAGTTATCGTTGTGAGTT+AGG - tig0027146:22222-22241 Msa1432700:intergenic 35.0%
! TGTGTTTAGATGGAAGGTTT+TGG + tig0027146:22259-22278 Msa1432700:intron 35.0%
!!! TTTAGATGGAAGGTTTTGGA+GGG + tig0027146:22263-22282 Msa1432700:intron 35.0%
AATGTGGTACTTAAGGCATA+AGG - tig0027146:22523-22542 Msa1432700:intergenic 35.0%
GTAGACAAGAAAACTCAATG+TGG - tig0027146:22539-22558 Msa1432700:intergenic 35.0%
! TTTTCTTGTCTACTCGATGT+TGG + tig0027146:22546-22565 Msa1432700:intron 35.0%
! GTTTGGGTTTCAGTTCAAAA+AGG + tig0027146:22591-22610 Msa1432700:intron 35.0%
!!! TGAAAGTCACACTGGTTTTA+AGG - tig0027146:22897-22916 Msa1432700:intergenic 35.0%
! GTGACTTTCAATGTTGCTTA+TGG + tig0027146:22907-22926 Msa1432700:intron 35.0%
!! AATGTTGCTTATGGACGTTT+TGG + tig0027146:22916-22935 Msa1432700:intron 35.0%
!! ATGTTGCTTATGGACGTTTT+GGG + tig0027146:22917-22936 Msa1432700:intron 35.0%
!!! CTTAGTTGTGTGCTGTTTTT+CGG + tig0027146:23050-23069 Msa1432700:intron 35.0%
AAATCTTAGACAGAGACCAA+AGG - tig0027146:23078-23097 Msa1432700:intergenic 35.0%
AGATGAATGAAGCCATGAAA+GGG - tig0027146:23293-23312 Msa1432700:intergenic 35.0%
TAGATGAATGAAGCCATGAA+AGG - tig0027146:23294-23313 Msa1432700:intergenic 35.0%
ACCTAATGAACAAGTCTCTA+GGG - tig0027146:23433-23452 Msa1432700:intergenic 35.0%
! TTTTCCACCGTGCAAATTTT+AGG + tig0027146:23591-23610 Msa1432700:intron 35.0%
! TTTCCACCGTGCAAATTTTA+GGG + tig0027146:23592-23611 Msa1432700:intron 35.0%
AGTAACCCCTAAAATTTGCA+CGG - tig0027146:23601-23620 Msa1432700:intergenic 35.0%
CTTCATGGTATGTAAGTTGT+TGG + tig0027146:23685-23704 Msa1432700:intron 35.0%
GAAACATTCAAAAGTCACAC+GGG - tig0027146:23796-23815 Msa1432700:intergenic 35.0%
! AATGTTTCTTCTGGACGTTT+TGG + tig0027146:23808-23827 Msa1432700:intron 35.0%
! ATGTTTCTTCTGGACGTTTT+GGG + tig0027146:23809-23828 Msa1432700:intron 35.0%
! GGAACTACATTTTCAACAAG+TGG + tig0027146:23830-23849 Msa1432700:intron 35.0%
CTCAGTAGTTCATTAGATGA+AGG + tig0027146:23899-23918 Msa1432700:intron 35.0%
TCGGCTCTTAAAGTCTTAAA+GGG - tig0027146:23974-23993 Msa1432700:intergenic 35.0%
TTAAGAGCCGACATATACTA+CGG + tig0027146:23983-24002 Msa1432700:intron 35.0%
CTACAGAAAGGAATAGAATG+AGG - tig0027146:24085-24104 Msa1432700:intergenic 35.0%
TTAAGAGTTAGGCTACAGAA+AGG - tig0027146:24097-24116 Msa1432700:intergenic 35.0%
TTGTATTAGACTCTCCTTGT+GGG - tig0027146:24147-24166 Msa1432700:intergenic 35.0%
TTTGTATTAGACTCTCCTTG+TGG - tig0027146:24148-24167 Msa1432700:intergenic 35.0%
CTTATTTCCATAAGTTGTCC+AGG - tig0027146:24333-24352 Msa1432700:intergenic 35.0%
! TTATCCTTAGTTCTCCCAAA+CGG + tig0027146:24394-24413 Msa1432700:intron 35.0%
TACTTTACTTAGGGTCTGTT+GGG - tig0027146:24464-24483 Msa1432700:intergenic 35.0%
GCTTTCTTATCTACTCAATG+TGG + tig0027146:24493-24512 Msa1432700:intron 35.0%
TATGACTTTGTTAGGGTGAT+TGG + tig0027146:24674-24693 Msa1432700:intron 35.0%
! TTATGGGGCTCTTGTATTTT+TGG + tig0027146:24713-24732 Msa1432700:intron 35.0%
TAGTTGACATATTACCAGAC+AGG + tig0027146:24764-24783 Msa1432700:intron 35.0%
AGTTGACATATTACCAGACA+GGG + tig0027146:24765-24784 Msa1432700:intron 35.0%
CCAGGTTATTATACATTCTC+AGG - tig0027146:24822-24841 Msa1432700:intergenic 35.0%
CCTGAGAATGTATAATAACC+TGG + tig0027146:24819-24838 Msa1432700:CDS 35.0%
GAGAATGTATAATAACCTGG+TGG + tig0027146:24822-24841 Msa1432700:CDS 35.0%
TCTTCTTCCACACTTGAGTT+AGG + tig0027146:21296-21315 Msa1432700:five_prime_UTR 40.0%
CTTCTTCCACACTTGAGTTA+GGG + tig0027146:21297-21316 Msa1432700:five_prime_UTR 40.0%
GATAAACCCTAACTCAAGTG+TGG - tig0027146:21306-21325 Msa1432700:intergenic 40.0%
ATAAATGTACCCCCTTTGAG+GGG - tig0027146:21561-21580 Msa1432700:intergenic 40.0%
GCAACATTCAATAGTCACAC+TGG - tig0027146:21775-21794 Msa1432700:intergenic 40.0%
!! AATGTTGCTTCTGGACGTTT+TGG + tig0027146:21787-21806 Msa1432700:intron 40.0%
!! ATGTTGCTTCTGGACGTTTT+GGG + tig0027146:21788-21807 Msa1432700:intron 40.0%
TACCTTTGGGCTCTGTTTAA+TGG + tig0027146:21910-21929 Msa1432700:intron 40.0%
TTCCATTAAACAGAGCCCAA+AGG - tig0027146:21915-21934 Msa1432700:intergenic 40.0%
CCATCAAACTAACTAGTCCA+TGG - tig0027146:21975-21994 Msa1432700:intergenic 40.0%
!! CCATGGACTAGTTAGTTTGA+TGG + tig0027146:21972-21991 Msa1432700:intron 40.0%
ACAAAAAGGGCTGCCTATAT+AGG - tig0027146:22197-22216 Msa1432700:intergenic 40.0%
TGACTTACGGTGTGTTTAGA+TGG + tig0027146:22249-22268 Msa1432700:intron 40.0%
TTACGGTGTGTTTAGATGGA+AGG + tig0027146:22253-22272 Msa1432700:intron 40.0%
!! GTTTAGATGGAAGGTTTTGG+AGG + tig0027146:22262-22281 Msa1432700:intron 40.0%
!!! TTAGATGGAAGGTTTTGGAG+GGG + tig0027146:22264-22283 Msa1432700:intron 40.0%
!! AGGAGGTTTTTGAAGGGTTT+GGG - tig0027146:22440-22459 Msa1432700:intergenic 40.0%
!! TTCTGGAGGAGGTTTTTGAA+GGG - tig0027146:22446-22465 Msa1432700:intergenic 40.0%
!! TTTCTGGAGGAGGTTTTTGA+AGG - tig0027146:22447-22466 Msa1432700:intergenic 40.0%
!!! AACTAGTTTTTGGGTTCTCC+TGG - tig0027146:22485-22504 Msa1432700:intergenic 40.0%
! CTACTAGTCTAGAGTGTGTT+TGG - tig0027146:22651-22670 Msa1432700:intergenic 40.0%
AGCAACATTGAAAGTCACAC+TGG - tig0027146:22905-22924 Msa1432700:intergenic 40.0%
ATTAAATTGGGAGAGCCTCA+TGG + tig0027146:23146-23165 Msa1432700:intron 40.0%
AAGGGATAAAAGTGGGTGAA+AGG - tig0027146:23268-23287 Msa1432700:intergenic 40.0%
AAGGGGAAAGGGATAAAAGT+GGG - tig0027146:23275-23294 Msa1432700:intergenic 40.0%
AAAGGGGAAAGGGATAAAAG+TGG - tig0027146:23276-23295 Msa1432700:intergenic 40.0%
TTTATCCCTTTCCCCTTTCA+TGG + tig0027146:23278-23297 Msa1432700:intron 40.0%
GATGAATGAAGCCATGAAAG+GGG - tig0027146:23292-23311 Msa1432700:intergenic 40.0%
TAGGGTTAGACTCTCCATAT+TGG - tig0027146:23415-23434 Msa1432700:intergenic 40.0%
! ACCCTAGAGACTTGTTCATT+AGG + tig0027146:23429-23448 Msa1432700:intron 40.0%
CACCTAATGAACAAGTCTCT+AGG - tig0027146:23434-23453 Msa1432700:intergenic 40.0%
! CTAGAGACTTGTTCATTAGG+TGG + tig0027146:23432-23451 Msa1432700:intron 40.0%
AATGTGGTACTTAAGTCGTG+AGG - tig0027146:23463-23482 Msa1432700:intergenic 40.0%
AAACTTCGAGGCGTAAATCT+GGG - tig0027146:23558-23577 Msa1432700:intergenic 40.0%
! TTCCACCGTGCAAATTTTAG+GGG + tig0027146:23593-23612 Msa1432700:intron 40.0%
TGATGTCCTCCTTAAAATGG+TGG + tig0027146:23718-23737 Msa1432700:intron 40.0%
! CAAAAGTCACACGGGTTTTA+AGG - tig0027146:23788-23807 Msa1432700:intergenic 40.0%
! GTCGGCTCTTAAAGTCTTAA+AGG - tig0027146:23975-23994 Msa1432700:intergenic 40.0%
GTGAAAGCCGTAGTATATGT+CGG - tig0027146:23993-24012 Msa1432700:intergenic 40.0%
AAATGAGTGAACCTGCCAAA+GGG - tig0027146:24036-24055 Msa1432700:intergenic 40.0%
CATCAAGTCTAAGAACCTCA+TGG + tig0027146:24177-24196 Msa1432700:intron 40.0%
AAACAAGGTCTTAAGCCATG+AGG - tig0027146:24195-24214 Msa1432700:intergenic 40.0%
TCATGGCTTAAGACCTTGTT+TGG + tig0027146:24194-24213 Msa1432700:intron 40.0%
!! GCTATTTTCATAAGTTGCCC+TGG + tig0027146:24312-24331 Msa1432700:intron 40.0%
AAACACTTGTGAGACCGTTT+GGG - tig0027146:24411-24430 Msa1432700:intergenic 40.0%
AAAACACTTGTGAGACCGTT+TGG - tig0027146:24412-24431 Msa1432700:intergenic 40.0%
GTACTTTACTTAGGGTCTGT+TGG - tig0027146:24465-24484 Msa1432700:intergenic 40.0%
TGGGTCTCATGATAGATTAG+TGG + tig0027146:24513-24532 Msa1432700:intron 40.0%
CTCATGATAGATTAGTGGTC+TGG + tig0027146:24518-24537 Msa1432700:intron 40.0%
!! ATAACGGACTAGAGTGTGTT+TGG - tig0027146:24597-24616 Msa1432700:intergenic 40.0%
CCAGAATGAAGAGTTACAGA+GGG - tig0027146:24640-24659 Msa1432700:intergenic 40.0%
CAAAATCAGATAACCCTGTC+TGG - tig0027146:24781-24800 Msa1432700:intergenic 40.0%
GAGATGCTTTCATGATTGTG+TGG + tig0027146:24846-24865 Msa1432700:CDS 40.0%
TAAATCCCTGCAAAAGCAAG+AGG + tig0027146:24882-24901 Msa1432700:CDS 40.0%
! GATTTGGAGCTGATCGATCA+TGG - tig0027146:21458-21477 Msa1432700:intergenic 45.0%
ACTTATGTTACCCCCCTCAA+AGG + tig0027146:21546-21565 Msa1432700:intron 45.0%
CTTATGTTACCCCCCTCAAA+GGG + tig0027146:21547-21566 Msa1432700:intron 45.0%
TTATGTTACCCCCCTCAAAG+GGG + tig0027146:21548-21567 Msa1432700:intron 45.0%
! TAAATGTACCCCCTTTGAGG+GGG - tig0027146:21560-21579 Msa1432700:intergenic 45.0%
!! TAGACATTGGCTCATAGAGG+TGG - tig0027146:22070-22089 Msa1432700:intergenic 45.0%
GGGAAAGCCGTTATAGACAT+TGG - tig0027146:22083-22102 Msa1432700:intergenic 45.0%
ATGTCTATAACGGCTTTCCC+TGG + tig0027146:22083-22102 Msa1432700:intron 45.0%
TCGATGAATGAAGCCACCAA+CGG - tig0027146:22122-22141 Msa1432700:intergenic 45.0%
ATGAAGGGCTGTCTATAGGT+TGG - tig0027146:22170-22189 Msa1432700:intergenic 45.0%
GCCTATATAGGCTGGATGAA+GGG - tig0027146:22185-22204 Msa1432700:intergenic 45.0%
TGCCTATATAGGCTGGATGA+AGG - tig0027146:22186-22205 Msa1432700:intergenic 45.0%
!! GGTTTTTGAAGGGTTTGGGA+TGG - tig0027146:22436-22455 Msa1432700:intergenic 45.0%
!! GAGGAGGTTTTTGAAGGGTT+TGG - tig0027146:22441-22460 Msa1432700:intergenic 45.0%
!!! TTAAGGGTGTTTTCTGGAGG+AGG - tig0027146:22457-22476 Msa1432700:intergenic 45.0%
!!! AGCTTAAGGGTGTTTTCTGG+AGG - tig0027146:22460-22479 Msa1432700:intergenic 45.0%
!!! GTGAGCTTAAGGGTGTTTTC+TGG - tig0027146:22463-22482 Msa1432700:intergenic 45.0%
AAAACACCCTTAAGCTCACC+AGG + tig0027146:22464-22483 Msa1432700:intron 45.0%
!!! GTGCTGTTTTTCGGTACCTT+TGG + tig0027146:23059-23078 Msa1432700:intron 45.0%
TGAAGCCATGAAAGGGGAAA+GGG - tig0027146:23286-23305 Msa1432700:intergenic 45.0%
ATGAAGCCATGAAAGGGGAA+AGG - tig0027146:23287-23306 Msa1432700:intergenic 45.0%
AACTTCGAGGCGTAAATCTG+GGG - tig0027146:23557-23576 Msa1432700:intergenic 45.0%
CAAACTTCGAGGCGTAAATC+TGG - tig0027146:23559-23578 Msa1432700:intergenic 45.0%
AACCCCTAAAATTTGCACGG+TGG - tig0027146:23598-23617 Msa1432700:intergenic 45.0%
AATGAGTGAACCTGCCAAAG+GGG - tig0027146:24035-24054 Msa1432700:intergenic 45.0%
CAAATGAGTGAACCTGCCAA+AGG - tig0027146:24037-24056 Msa1432700:intergenic 45.0%
TGTTATGACTTGAGCCCACA+AGG + tig0027146:24130-24149 Msa1432700:intron 45.0%
AAGTTGCCCTGGACAACTTA+TGG + tig0027146:24323-24342 Msa1432700:intron 45.0%
CCCTCTGTAACTCTTCATTC+TGG + tig0027146:24637-24656 Msa1432700:intron 45.0%
GCCAGAATGAAGAGTTACAG+AGG - tig0027146:24641-24660 Msa1432700:intergenic 45.0%
!! GGTTTCCTCTTGCTTTTGCA+GGG - tig0027146:24890-24909 Msa1432700:intergenic 45.0%
!! AGGTTTCCTCTTGCTTTTGC+AGG - tig0027146:24891-24910 Msa1432700:intergenic 45.0%
! AATCTTGAGTTGCAGCTCCT+TGG - tig0027146:24984-25003 Msa1432700:intergenic 45.0%
ATCAGCTCCAAATCCGTGAC+AGG + tig0027146:21464-21483 Msa1432700:CDS 50.0%
AACCTCACCTGTCACGGATT+TGG - tig0027146:21474-21493 Msa1432700:intergenic 50.0%
TTTGGGAACCTCACCTGTCA+CGG - tig0027146:21480-21499 Msa1432700:intergenic 50.0%
TATGTTACCCCCCTCAAAGG+GGG + tig0027146:21549-21568 Msa1432700:intron 50.0%
! AAATGTACCCCCTTTGAGGG+GGG - tig0027146:21559-21578 Msa1432700:intergenic 50.0%
ATGAAGCCACCAACGGGAAA+GGG - tig0027146:22115-22134 Msa1432700:intergenic 50.0%
AATGAAGCCACCAACGGGAA+AGG - tig0027146:22116-22135 Msa1432700:intergenic 50.0%
CGATGAATGAAGCCACCAAC+GGG - tig0027146:22121-22140 Msa1432700:intergenic 50.0%
CTGGATGAAGGGCTGTCTAT+AGG - tig0027146:22174-22193 Msa1432700:intergenic 50.0%
GCCCTTCATCCAGCCTATAT+AGG + tig0027146:22181-22200 Msa1432700:intron 50.0%
AAAGGGCTGCCTATATAGGC+TGG - tig0027146:22193-22212 Msa1432700:intergenic 50.0%
GGTTCTCCTGGTGAGCTTAA+GGG - tig0027146:22473-22492 Msa1432700:intergenic 50.0%
ATACTACGGCTTTCACCTGC+TGG + tig0027146:23997-24016 Msa1432700:intron 50.0%
GGTGGTATTCCTTTCCCCTT+TGG + tig0027146:24018-24037 Msa1432700:intron 50.0%
GTATTCCTTTCCCCTTTGGC+AGG + tig0027146:24022-24041 Msa1432700:intron 50.0%
GAGACCGTTTGGGAGAACTA+AGG - tig0027146:24401-24420 Msa1432700:intergenic 50.0%
!! CATGAAAGCATCTCTCCACC+AGG - tig0027146:24840-24859 Msa1432700:intergenic 50.0%
CTCTGCACATCTTCGAACAC+AGG - tig0027146:24911-24930 Msa1432700:intergenic 50.0%
! CTGAAGCACTCTATGCGTGT+TGG + tig0027146:24937-24956 Msa1432700:CDS 50.0%
! ACTCTATGCGTGTTGGCATG+AGG + tig0027146:24944-24963 Msa1432700:CDS 50.0%
!! AGGTTTGCTGAGCTCAACCA+AGG + tig0027146:24964-24983 Msa1432700:CDS 50.0%
CTCCAAATCCGTGACAGGTG+AGG + tig0027146:21469-21488 Msa1432700:intron 55.0%
ACTAGTCCATGGGCTCGACT+CGG - tig0027146:21964-21983 Msa1432700:intergenic 55.0%
ACGGGAAAGGGATAACGCCA+GGG - tig0027146:22103-22122 Msa1432700:intergenic 55.0%
AACGGGAAAGGGATAACGCC+AGG - tig0027146:22104-22123 Msa1432700:intergenic 55.0%
TGGCGTTATCCCTTTCCCGT+TGG + tig0027146:22103-22122 Msa1432700:intron 55.0%
CGTTATCCCTTTCCCGTTGG+TGG + tig0027146:22106-22125 Msa1432700:intron 55.0%
!!! GATGGAAGGTTTTGGAGGGG+AGG + tig0027146:22267-22286 Msa1432700:intron 55.0%
GGGTTCTCCTGGTGAGCTTA+AGG - tig0027146:22474-22493 Msa1432700:intergenic 55.0%
GGGAAAGGAATACCACCAGC+AGG - tig0027146:24015-24034 Msa1432700:intergenic 55.0%
GTGAACCTGCCAAAGGGGAA+AGG - tig0027146:24030-24049 Msa1432700:intergenic 55.0%
GTTATGCCGAGTCGAGCCCA+TGG + tig0027146:21955-21974 Msa1432700:intron 60.0%
CTACGGCTTTCACCTGCTGG+TGG + tig0027146:24000-24019 Msa1432700:intron 60.0%
Chromosome Type Strat End Strand Name
tig0027146 gene 21270 25007 21270 ID=Msa1432700;Name=Msa1432700
tig0027146 mRNA 21270 25007 21270 ID=Msa1432700-mRNA-1;Parent=Msa1432700;Name=Msa1432700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|2|2|93
tig0027146 exon 21270 21485 21270 ID=Msa1432700-mRNA-1:exon:8239;Parent=Msa1432700-mRNA-1
tig0027146 exon 24819 25007 24819 ID=Msa1432700-mRNA-1:exon:8240;Parent=Msa1432700-mRNA-1
tig0027146 five_prime_UTR 21270 21390 21270 ID=Msa1432700-mRNA-1:five_prime_utr;Parent=Msa1432700-mRNA-1
tig0027146 CDS 21391 21485 21391 ID=Msa1432700-mRNA-1:cds;Parent=Msa1432700-mRNA-1
tig0027146 CDS 24819 25005 24819 ID=Msa1432700-mRNA-1:cds;Parent=Msa1432700-mRNA-1
tig0027146 three_prime_UTR 25006 25007 25006 ID=Msa1432700-mRNA-1:three_prime_utr;Parent=Msa1432700-mRNA-1
Gene Sequence

>Msa1432700

ATGGACAAAAGCATGATTGCTGATATGGAAAATCTTCCAGAGGCTGATAAACAAAGAATGGCTACCATGATCGATCAGCTCCAAATCCGTGACAGCCTGAGAATGTATAATAACCTGGTGGAGAGATGCTTTCATGATTGTGTGGATACATTTAAGCATAAATCCCTGCAAAAGCAAGAGGAAACCTGTGTTCGAAGATGTGCAGAGAAATTTCTGAAGCACTCTATGCGTGTTGGCATGAGGTTTGCTGAGCTCAACCAAGGAGCTGCAACTCAAGATTGA

Protein sequence

>Msa1432700

MDKSMIADMENLPEADKQRMATMIDQLQIRDSLRMYNNLVERCFHDCVDTFKHKSLQKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATQD*