AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0189300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189300 MtrunA17_Chr2g0278341 99.123 228 2 0 1 228 1 228 7.20e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189300 AT1G25260.1 71.101 218 62 1 1 218 1 217 4.89e-113 323

Find 53 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTGCAAAATCAAAATT+AGG 0.130530 2_1:-4702945 None:intergenic
TGTTTGTTTCTCTTAGATTT+TGG 0.161156 2_1:+4702857 None:intergenic
ATTCGAAATTGAAAGAGTTT+AGG 0.242754 2_1:-4702618 Msa0189300:CDS
CTTTGAAACTTTGTGAAGAT+TGG 0.248050 2_1:+4702504 None:intergenic
TTCGAAATTGAAAGAGTTTA+GGG 0.248422 2_1:-4702617 Msa0189300:CDS
CACAAAGAATTGATAATTAA+TGG 0.257611 2_1:-4702703 Msa0189300:CDS
CCCTTGCAAAATCAAAATTA+GGG 0.300738 2_1:-4702944 None:intergenic
TGATAATATAAACTGAATAT+TGG 0.307619 2_1:+4699806 None:intergenic
CAGCAGGGATGTGGCTTGTA+TGG 0.319458 2_1:-4699876 Msa0189300:three_prime_UTR
AGAGCAGTTCACACATGATA+TGG 0.322264 2_1:-4701101 Msa0189300:CDS
GACTGAACCTGGTTTGTAGA+TGG 0.358071 2_1:-4700106 Msa0189300:CDS
TTTGAAACTTTGTGAAGATT+GGG 0.382034 2_1:+4702505 None:intergenic
ACCTGAAGCATCTCGTATAC+TGG 0.389289 2_1:-4700890 Msa0189300:intron
GAACAGGCATGCCTTGCTTC+CGG 0.401326 2_1:+4701068 None:intergenic
AAAGTAATGCAAGTTGCTAT+TGG 0.403753 2_1:-4702553 Msa0189300:CDS
CAGCTATTGCGTGGAGATGC+TGG 0.406333 2_1:-4701880 Msa0189300:CDS
AAAATTTGATTCTTAAGTTA+CGG 0.406742 2_1:+4699852 None:intergenic
GTACCTTTATTTAACCGAAC+AGG 0.425105 2_1:+4701052 None:intergenic
ATGCCTGTTCGGTTAAATAA+AGG 0.445190 2_1:-4701055 Msa0189300:intron
ACTGAACCTGGTTTGTAGAT+GGG 0.448280 2_1:-4700105 Msa0189300:CDS
TAGGCTGTTTAATGAATTTG+AGG 0.448398 2_1:-4701511 Msa0189300:CDS
ATGTTGAAGATTACAAGATA+TGG 0.449326 2_1:-4700004 Msa0189300:three_prime_UTR
ACCAGTATACGAGATGCTTC+AGG 0.450575 2_1:+4700889 None:intergenic
TCCAAAATTCACAGGTGTTG+TGG 0.453240 2_1:-4700959 Msa0189300:intron
GGAAGCAAGGCATGCCTGTT+CGG 0.453618 2_1:-4701066 Msa0189300:CDS
TCATGTGTGAACTGCTCTAA+AGG 0.461609 2_1:+4701106 None:intergenic
ATGCCTTGCTTCCGGAGAAA+AGG 0.467064 2_1:+4701076 None:intergenic
GGATGCGACTTTGCAAGAAC+AGG 0.475150 2_1:-4701489 Msa0189300:CDS
GGTGTGGATGCAATTTACTT+TGG 0.475626 2_1:-4699983 Msa0189300:three_prime_UTR
GTGGATGCAATTTACTTTGG+AGG 0.481220 2_1:-4699980 Msa0189300:three_prime_UTR
CAATCTTCACAAAGTTTCAA+AGG 0.483461 2_1:-4702503 Msa0189300:intron
GACTTTGTTGTTTGTGAGGA+GGG 0.491569 2_1:-4700925 Msa0189300:CDS
GGCTACGTTTCGACTGAACC+TGG 0.495680 2_1:-4700117 Msa0189300:CDS
AAAATTTCACAGTCACATTG+AGG 0.502429 2_1:-4702910 Msa0189300:five_prime_UTR
GAACTCTACATTGATGGGCC+TGG 0.523108 2_1:-4700065 Msa0189300:CDS
AGGCTGTTTAATGAATTTGA+GGG 0.523767 2_1:-4701510 Msa0189300:CDS
CTGAACCTGGTTTGTAGATG+GGG 0.535144 2_1:-4700104 Msa0189300:CDS
CATTCAACATCTGAATCGCC+AGG 0.535824 2_1:+4700047 None:intergenic
GATACAGTACTATGTAGTAT+TGG 0.536486 2_1:-4699942 Msa0189300:three_prime_UTR
ACTGTTTCAGGTTGAACTCA+AGG 0.537015 2_1:-4701134 Msa0189300:intron
GCGTTTGATGGGAAATATGA+TGG 0.540790 2_1:-4700138 Msa0189300:CDS
TTCTGACTTTGTTGTTTGTG+AGG 0.545701 2_1:-4700929 Msa0189300:CDS
AAATTTCACAGTCACATTGA+GGG 0.552927 2_1:-4702909 Msa0189300:five_prime_UTR
TGACTTTGTTGTTTGTGAGG+AGG 0.559551 2_1:-4700926 Msa0189300:CDS
TGTCTAAAGAAGAAGTTGAA+AGG 0.565730 2_1:-4701840 Msa0189300:intron
CAGAACCCCATCTACAAACC+AGG 0.589817 2_1:+4700099 None:intergenic
CGAGATGCTTCAGGTGACAA+AGG 0.595978 2_1:+4700898 None:intergenic
GGTTTGTAGATGGGGTTCTG+AGG 0.610326 2_1:-4700096 Msa0189300:CDS
AGTACTGTATCACTACATCA+AGG 0.640398 2_1:+4699954 None:intergenic
TTTCAGGTTGAACTCAAGGA+GGG 0.645581 2_1:-4701130 Msa0189300:intron
GAAGATTACAAGATATGGTG+TGG 0.670814 2_1:-4699999 Msa0189300:three_prime_UTR
GTTTCAGGTTGAACTCAAGG+AGG 0.696156 2_1:-4701131 Msa0189300:intron
AAATCTAAGAGAAACAAACA+AGG 0.734245 2_1:-4702854 Msa0189300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAATGAAAGATATA+GGG + chr2_1:4702119-4702138 None:intergenic 10.0%
!! TATATAAAAATGAAAGATAT+AGG + chr2_1:4702120-4702139 None:intergenic 10.0%
!!! TTTGTTTTATTTTTTTGTTG+TGG - chr2_1:4700261-4700280 Msa0189300:intron 15.0%
!! AAAAAAAAAATCAAACCAAA+CGG + chr2_1:4700436-4700455 None:intergenic 15.0%
!! ATATTCATAAAAAATGTAAG+AGG + chr2_1:4700783-4700802 None:intergenic 15.0%
!!! TTTTTATTGATGCTATTTAT+AGG - chr2_1:4701182-4701201 Msa0189300:intron 15.0%
!! AACTAAAAAGTAATTAATGA+TGG + chr2_1:4702263-4702282 None:intergenic 15.0%
!! AAAATTTGATTCTTAAGTTA+CGG + chr2_1:4702863-4702882 None:intergenic 15.0%
!! TGATAATATAAACTGAATAT+TGG + chr2_1:4702909-4702928 None:intergenic 15.0%
!!! CACAAAGAATTGATAATTAA+TGG - chr2_1:4700009-4700028 Msa0189300:three_prime_UTR 20.0%
!!! ATGTGATTTTGATTAGTTTT+TGG - chr2_1:4700293-4700312 Msa0189300:intron 20.0%
!!! ATGCAAATAAATAAGCTTTT+AGG - chr2_1:4700480-4700499 Msa0189300:intron 20.0%
!!! TCATTTGAAAAGTTGTTTTT+CGG + chr2_1:4700650-4700669 None:intergenic 20.0%
!!! TTTTTGAAAATCTGTAACAA+AGG - chr2_1:4700685-4700704 Msa0189300:intron 20.0%
!! CAAATTTAATGTACGATTAT+TGG - chr2_1:4700939-4700958 Msa0189300:CDS 20.0%
!!! AATTTTGCTTGAATAAACAT+TGG - chr2_1:4701075-4701094 Msa0189300:CDS 20.0%
!! AAATAGCATCAATAAAAATC+AGG + chr2_1:4701180-4701199 None:intergenic 20.0%
!!! TCATTTTCTTAAATCATTAC+CGG + chr2_1:4701382-4701401 None:intergenic 20.0%
!! AAGAAAATGACATAATTGAA+TGG - chr2_1:4701392-4701411 Msa0189300:intron 20.0%
!! GAAATTAGTAACACTAAATA+TGG + chr2_1:4702016-4702035 None:intergenic 20.0%
!!! TATTTAGTGTTACTAATTTC+AGG - chr2_1:4702016-4702035 Msa0189300:intron 20.0%
!! AAAAAGTAATTAATGATGGT+GGG + chr2_1:4702259-4702278 None:intergenic 20.0%
!! TAAAAAGTAATTAATGATGG+TGG + chr2_1:4702260-4702279 None:intergenic 20.0%
!! TTACTATTGAGAATTTAACA+AGG + chr2_1:4702403-4702422 None:intergenic 20.0%
!! ATTAATTACTTCAATAACCA+AGG + chr2_1:4702446-4702465 None:intergenic 20.0%
!!! TTGAAGTAATTAATTAGTCT+CGG - chr2_1:4702452-4702471 Msa0189300:intron 20.0%
!! TGATGTACATACTATAATAA+TGG + chr2_1:4702513-4702532 None:intergenic 20.0%
!!! TTGTGAACTAGAAATATTTT+TGG - chr2_1:4702881-4702900 Msa0189300:exon 20.0%
!!! TGTTTGTTTCTCTTAGATTT+TGG + chr2_1:4699858-4699877 None:intergenic 25.0%
! AAATCTAAGAGAAACAAACA+AGG - chr2_1:4699858-4699877 Msa0189300:three_prime_UTR 25.0%
! ATTCGAAATTGAAAGAGTTT+AGG - chr2_1:4700094-4700113 Msa0189300:CDS 25.0%
! TTCGAAATTGAAAGAGTTTA+GGG - chr2_1:4700095-4700114 Msa0189300:CDS 25.0%
!! TTTGAAACTTTGTGAAGATT+GGG + chr2_1:4700210-4700229 None:intergenic 25.0%
!!! TTGGAGATTTTTAAGAAAAG+CGG - chr2_1:4700312-4700331 Msa0189300:intron 25.0%
! AGCTAAAATTGTATCTTCAT+CGG - chr2_1:4700523-4700542 Msa0189300:intron 25.0%
! TATTATTGATAAGCTTGTCA+AGG + chr2_1:4700573-4700592 None:intergenic 25.0%
!!! CATTTGAAAAGTTGTTTTTC+GGG + chr2_1:4700649-4700668 None:intergenic 25.0%
! TATAGTAGCTGATATTCAAT+TGG - chr2_1:4701007-4701026 Msa0189300:intron 25.0%
!! CTGATATTCAATTGGTAATT+TGG - chr2_1:4701015-4701034 Msa0189300:intron 25.0%
!!! ATCGTTAACCTTTTTCAATA+GGG - chr2_1:4701098-4701117 Msa0189300:CDS 25.0%
! ATTATAGGTTTCTACTAACA+AGG + chr2_1:4701319-4701338 None:intergenic 25.0%
!! ACTCATTCAATTAAAAGTGT+TGG - chr2_1:4701450-4701469 Msa0189300:intron 25.0%
!!! GTCAATTATTAGTCTTCAAT+TGG + chr2_1:4701730-4701749 None:intergenic 25.0%
! CTGATATTGTAAGTTCTATT+GGG + chr2_1:4701910-4701929 None:intergenic 25.0%
! TAAAAATGAAAGATATAGGG+AGG + chr2_1:4702116-4702135 None:intergenic 25.0%
! CAAACAAGAAAAAATCAATG+GGG + chr2_1:4702168-4702187 None:intergenic 25.0%
! CCAAACAAGAAAAAATCAAT+GGG + chr2_1:4702169-4702188 None:intergenic 25.0%
!!! CCATTGATTTTTTCTTGTTT+GGG - chr2_1:4702167-4702186 Msa0189300:intron 25.0%
! GAAATGGAGAGAATAATAAA+TGG - chr2_1:4702322-4702341 Msa0189300:intron 25.0%
!! TATAATAATGGTGCTAATTG+AGG + chr2_1:4702501-4702520 None:intergenic 25.0%
!! ATTTTGAACTCTACATTGAT+GGG - chr2_1:4702642-4702661 Msa0189300:CDS 25.0%
! ATGTTGAAGATTACAAGATA+TGG - chr2_1:4702708-4702727 Msa0189300:CDS 25.0%
AAAATTTCACAGTCACATTG+AGG - chr2_1:4699802-4699821 Msa0189300:three_prime_UTR 30.0%
AAATTTCACAGTCACATTGA+GGG - chr2_1:4699803-4699822 Msa0189300:three_prime_UTR 30.0%
!! GATTTTGGCATTTTGAACTA+TGG + chr2_1:4699843-4699862 None:intergenic 30.0%
!!! TCAAGTAGCAAGTTTTTTCT+TGG - chr2_1:4700129-4700148 Msa0189300:CDS 30.0%
AAAGTAATGCAAGTTGCTAT+TGG - chr2_1:4700159-4700178 Msa0189300:intron 30.0%
!! CTTTGAAACTTTGTGAAGAT+TGG + chr2_1:4700211-4700230 None:intergenic 30.0%
CAATCTTCACAAAGTTTCAA+AGG - chr2_1:4700209-4700228 Msa0189300:intron 30.0%
!! ATTTTCTGAGAAGCTACTAA+TGG - chr2_1:4700409-4700428 Msa0189300:intron 30.0%
!! TTTTCTGAGAAGCTACTAAT+GGG - chr2_1:4700410-4700429 Msa0189300:intron 30.0%
ACAAAATAAGCCAATCCAAA+CGG - chr2_1:4700622-4700641 Msa0189300:intron 30.0%
TGTCTAAAGAAGAAGTTGAA+AGG - chr2_1:4700872-4700891 Msa0189300:intron 30.0%
TGATATGCTAAACATGTTTC+TGG - chr2_1:4701046-4701065 Msa0189300:intron 30.0%
GATATGCTAAACATGTTTCT+GGG - chr2_1:4701047-4701066 Msa0189300:intron 30.0%
! ATATGCTAAACATGTTTCTG+GGG - chr2_1:4701048-4701067 Msa0189300:intron 30.0%
!!! GATCGTTAACCTTTTTCAAT+AGG - chr2_1:4701097-4701116 Msa0189300:CDS 30.0%
!!! TCGTTAACCTTTTTCAATAG+GGG - chr2_1:4701099-4701118 Msa0189300:CDS 30.0%
CATCAATAAAAATCAGGTTC+TGG + chr2_1:4701174-4701193 None:intergenic 30.0%
TAGGCTGTTTAATGAATTTG+AGG - chr2_1:4701201-4701220 Msa0189300:intron 30.0%
AGGCTGTTTAATGAATTTGA+GGG - chr2_1:4701202-4701221 Msa0189300:intron 30.0%
!!! CTAGATTCAACCTACTTTTT+CGG + chr2_1:4701260-4701279 None:intergenic 30.0%
!! CTTTTAATTGAATGAGTGTC+TGG + chr2_1:4701447-4701466 None:intergenic 30.0%
!! ATTATTAGTCTTCAATTGGC+AGG + chr2_1:4701726-4701745 None:intergenic 30.0%
CCTGATATTGTAAGTTCTAT+TGG + chr2_1:4701911-4701930 None:intergenic 30.0%
CCAATAGAACTTACAATATC+AGG - chr2_1:4701908-4701927 Msa0189300:intron 30.0%
GGATAATGTGAACAATCAAA+TGG + chr2_1:4702147-4702166 None:intergenic 30.0%
!!! CCCATTGATTTTTTCTTGTT+TGG - chr2_1:4702166-4702185 Msa0189300:intron 30.0%
CCCAAACAAGAAAAAATCAA+TGG + chr2_1:4702170-4702189 None:intergenic 30.0%
!!! TTGATTTTTTCTTGTTTGGG+TGG - chr2_1:4702170-4702189 Msa0189300:intron 30.0%
!!! TGATTTTTTCTTGTTTGGGT+GGG - chr2_1:4702171-4702190 Msa0189300:intron 30.0%
TTGACACATAAAATAGACAG+TGG - chr2_1:4702214-4702233 Msa0189300:intron 30.0%
TGACACATAAAATAGACAGT+GGG - chr2_1:4702215-4702234 Msa0189300:intron 30.0%
ACATCATCAACGTTATAATG+TGG - chr2_1:4702527-4702546 Msa0189300:CDS 30.0%
! GATTTTGAACTCTACATTGA+TGG - chr2_1:4702641-4702660 Msa0189300:CDS 30.0%
GATACAGTACTATGTAGTAT+TGG - chr2_1:4702770-4702789 Msa0189300:intron 30.0%
! TTGATGAATGTATTTTCAGC+AGG - chr2_1:4702820-4702839 Msa0189300:intron 30.0%
! TGATGAATGTATTTTCAGCA+GGG - chr2_1:4702821-4702840 Msa0189300:intron 30.0%
! TTTGGCATTTTGAACTATGG+AGG + chr2_1:4699840-4699859 None:intergenic 35.0%
CTCTCAAAGACAACGAAAAA+AGG - chr2_1:4699979-4699998 Msa0189300:three_prime_UTR 35.0%
AAGACAACGAAAAAAGGAAG+AGG - chr2_1:4699985-4700004 Msa0189300:three_prime_UTR 35.0%
CAAAATAAGCCAATCCAAAC+GGG - chr2_1:4700623-4700642 Msa0189300:intron 35.0%
!!! CGTTAACCTTTTTCAATAGG+GGG - chr2_1:4701100-4701119 Msa0189300:CDS 35.0%
!!! GTTAACCTTTTTCAATAGGG+GGG - chr2_1:4701101-4701120 Msa0189300:CDS 35.0%
TTGAATGGAATCACACATGT+CGG - chr2_1:4701407-4701426 Msa0189300:intron 35.0%
!! TAAAAGTGTTGGTGCTACAA+AGG - chr2_1:4701461-4701480 Msa0189300:intron 35.0%
TTTCAAGATCTGACTGTTTC+AGG - chr2_1:4701566-4701585 Msa0189300:intron 35.0%
! ATGATATGGAACCTTTTCTC+CGG - chr2_1:4701625-4701644 Msa0189300:intron 35.0%
ATGCCTGTTCGGTTAAATAA+AGG - chr2_1:4701657-4701676 Msa0189300:intron 35.0%
! GTACCTTTATTTAACCGAAC+AGG + chr2_1:4701663-4701682 None:intergenic 35.0%
TTGACGTTTCCAAAATTCAC+AGG - chr2_1:4701745-4701764 Msa0189300:intron 35.0%
!! TTCTGACTTTGTTGTTTGTG+AGG - chr2_1:4701783-4701802 Msa0189300:intron 35.0%
ATAGGCAGGAAGTAGTTATT+AGG + chr2_1:4701982-4702001 None:intergenic 35.0%
TAATAACTACTTCCTGCCTA+TGG - chr2_1:4701981-4702000 Msa0189300:intron 35.0%
AATAACTACTTCCTGCCTAT+GGG - chr2_1:4701982-4702001 Msa0189300:intron 35.0%
AATATGGTCGAATAACCCAT+AGG + chr2_1:4702000-4702019 None:intergenic 35.0%
TGTGTCTATATCTCTCCAAA+TGG - chr2_1:4702297-4702316 Msa0189300:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_1:4702306-4702325 Msa0189300:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_1:4702315-4702334 None:intergenic 35.0%
GGAGAGAATAATAAATGGAG+AGG - chr2_1:4702327-4702346 Msa0189300:intron 35.0%
AATAACCAAGGTCAAGATGT+TGG + chr2_1:4702434-4702453 None:intergenic 35.0%
GAAGATTACAAGATATGGTG+TGG - chr2_1:4702713-4702732 Msa0189300:CDS 35.0%
AGTACTGTATCACTACATCA+AGG + chr2_1:4702761-4702780 None:intergenic 35.0%
!! GTTTTGTTACAGCTATTGCG+TGG - chr2_1:4700823-4700842 Msa0189300:intron 40.0%
GAAAACCCCCCTATTGAAAA+AGG + chr2_1:4701109-4701128 None:intergenic 40.0%
!!! GATTCAACCTACTTTTTCGG+TGG + chr2_1:4701257-4701276 None:intergenic 40.0%
TGTCTGTGTAGGTGCATTAT+AGG + chr2_1:4701334-4701353 None:intergenic 40.0%
!! TCGACATGTCAGTGTTGTTT+CGG + chr2_1:4701357-4701376 None:intergenic 40.0%
!! ACTGTTTCAGGTTGAACTCA+AGG - chr2_1:4701578-4701597 Msa0189300:intron 40.0%
!! TTTCAGGTTGAACTCAAGGA+GGG - chr2_1:4701582-4701601 Msa0189300:intron 40.0%
TCATGTGTGAACTGCTCTAA+AGG + chr2_1:4701609-4701628 None:intergenic 40.0%
AGAGCAGTTCACACATGATA+TGG - chr2_1:4701611-4701630 Msa0189300:intron 40.0%
! TCCAAAATTCACAGGTGTTG+TGG - chr2_1:4701753-4701772 Msa0189300:intron 40.0%
! TCCACAACACCTGTGAATTT+TGG + chr2_1:4701757-4701776 None:intergenic 40.0%
!! TGACTTTGTTGTTTGTGAGG+AGG - chr2_1:4701786-4701805 Msa0189300:intron 40.0%
!! GACTTTGTTGTTTGTGAGGA+GGG - chr2_1:4701787-4701806 Msa0189300:intron 40.0%
AGTTGAAGTTGCACTACTCT+AGG - chr2_1:4701939-4701958 Msa0189300:intron 40.0%
GTTGAAGTTGCACTACTCTA+GGG - chr2_1:4701940-4701959 Msa0189300:intron 40.0%
ACTCCACTTCGTTCTATCTT+TGG + chr2_1:4702042-4702061 None:intergenic 40.0%
AAGATAGAACGAAGTGGAGT+AGG - chr2_1:4702042-4702061 Msa0189300:intron 40.0%
!!! TTTTTTCTTGTTTGGGTGGG+TGG - chr2_1:4702174-4702193 Msa0189300:intron 40.0%
AGTGGGTCCTACTATTATGT+GGG - chr2_1:4702232-4702251 Msa0189300:intron 40.0%
TCTATCCAACATCTTGACCT+TGG - chr2_1:4702426-4702445 Msa0189300:intron 40.0%
! TGCTTTTGACAGCGTTTGAT+GGG - chr2_1:4702563-4702582 Msa0189300:CDS 40.0%
GCGTTTGATGGGAAATATGA+TGG - chr2_1:4702574-4702593 Msa0189300:CDS 40.0%
! ACTGAACCTGGTTTGTAGAT+GGG - chr2_1:4702607-4702626 Msa0189300:CDS 40.0%
GGTGTGGATGCAATTTACTT+TGG - chr2_1:4702729-4702748 Msa0189300:CDS 40.0%
GTGGATGCAATTTACTTTGG+AGG - chr2_1:4702732-4702751 Msa0189300:CDS 40.0%
! ATGTATTTTCAGCAGGGATG+TGG - chr2_1:4702827-4702846 Msa0189300:intron 40.0%
AGCATTGCCACCGAAAAAGT+AGG - chr2_1:4701247-4701266 Msa0189300:intron 45.0%
!! TGTTGTTTCGGTGTCTGTGT+AGG + chr2_1:4701345-4701364 None:intergenic 45.0%
GAGCAACTACAGGATATGTC+AGG + chr2_1:4701502-4701521 None:intergenic 45.0%
!! GTTTCAGGTTGAACTCAAGG+AGG - chr2_1:4701581-4701600 Msa0189300:intron 45.0%
! ACCTGAAGCATCTCGTATAC+TGG - chr2_1:4701822-4701841 Msa0189300:intron 45.0%
ACCAGTATACGAGATGCTTC+AGG + chr2_1:4701826-4701845 None:intergenic 45.0%
TAGCACAGAGCAGAGGATTT+GGG + chr2_1:4701864-4701883 None:intergenic 45.0%
ATAGCACAGAGCAGAGGATT+TGG + chr2_1:4701865-4701884 None:intergenic 45.0%
! TGTGCTGGCGAACATAAATG+TGG - chr2_1:4701884-4701903 Msa0189300:intron 45.0%
AGGCCAAAGATAGAACGAAG+TGG - chr2_1:4702036-4702055 Msa0189300:intron 45.0%
CAGTGGGTCCTACTATTATG+TGG - chr2_1:4702231-4702250 Msa0189300:intron 45.0%
ATGGAGAGGATCTTAACTCG+TGG - chr2_1:4702341-4702360 Msa0189300:intron 45.0%
TGGAGAGGATCTTAACTCGT+GGG - chr2_1:4702342-4702361 Msa0189300:intron 45.0%
!! CTGCTTTTGACAGCGTTTGA+TGG - chr2_1:4702562-4702581 Msa0189300:CDS 45.0%
! GACTGAACCTGGTTTGTAGA+TGG - chr2_1:4702606-4702625 Msa0189300:CDS 45.0%
! CTGAACCTGGTTTGTAGATG+GGG - chr2_1:4702608-4702627 Msa0189300:CDS 45.0%
CATTCAACATCTGAATCGCC+AGG + chr2_1:4702668-4702687 None:intergenic 45.0%
! GAAGCTACTAATGGGCCGTT+TGG - chr2_1:4700418-4700437 Msa0189300:intron 50.0%
!!! TTTTTCGGGCCCGTTTGGAT+TGG + chr2_1:4700635-4700654 None:intergenic 50.0%
!!! AGTTGTTTTTCGGGCCCGTT+TGG + chr2_1:4700640-4700659 None:intergenic 50.0%
GGATGCGACTTTGCAAGAAC+AGG - chr2_1:4701223-4701242 Msa0189300:intron 50.0%
CAACACTGACATGTCGACAC+CGG - chr2_1:4701360-4701379 Msa0189300:intron 50.0%
CCAGATGCATGAGCAACTAC+AGG + chr2_1:4701512-4701531 None:intergenic 50.0%
CCTGTAGTTGCTCATGCATC+TGG - chr2_1:4701509-4701528 Msa0189300:CDS 50.0%
! GAACCTTTTCTCCGGAAGCA+AGG - chr2_1:4701633-4701652 Msa0189300:intron 50.0%
ATGCCTTGCTTCCGGAGAAA+AGG + chr2_1:4701639-4701658 None:intergenic 50.0%
CGAGATGCTTCAGGTGACAA+AGG + chr2_1:4701817-4701836 None:intergenic 50.0%
TGGTCGAATAACCCATAGGC+AGG + chr2_1:4701996-4702015 None:intergenic 50.0%
TTTGGGTGGGTGGTGCAATT+TGG - chr2_1:4702184-4702203 Msa0189300:intron 50.0%
GGTGGGACCCACATAATAGT+AGG + chr2_1:4702242-4702261 None:intergenic 50.0%
GGAGAGGATCTTAACTCGTG+GGG - chr2_1:4702343-4702362 Msa0189300:intron 50.0%
GAGAGGATCTTAACTCGTGG+GGG - chr2_1:4702344-4702363 Msa0189300:intron 50.0%
CAGAACCCCATCTACAAACC+AGG + chr2_1:4702616-4702635 None:intergenic 50.0%
GGTTTGTAGATGGGGTTCTG+AGG - chr2_1:4702616-4702635 Msa0189300:CDS 50.0%
! GAACTCTACATTGATGGGCC+TGG - chr2_1:4702647-4702666 Msa0189300:CDS 50.0%
CAGCTATTGCGTGGAGATGC+TGG - chr2_1:4700832-4700851 Msa0189300:intron 55.0%
GAACAGGCATGCCTTGCTTC+CGG + chr2_1:4701647-4701666 None:intergenic 55.0%
GGAAGCAAGGCATGCCTGTT+CGG - chr2_1:4701646-4701665 Msa0189300:intron 55.0%
CAGCACATAGCACAGAGCAG+AGG + chr2_1:4701871-4701890 None:intergenic 55.0%
CTCTGCTCTGTGCTATGTGC+TGG - chr2_1:4701869-4701888 Msa0189300:CDS 55.0%
GGCTACGTTTCGACTGAACC+TGG - chr2_1:4702595-4702614 Msa0189300:CDS 55.0%
! CAGCAGGGATGTGGCTTGTA+TGG - chr2_1:4702836-4702855 Msa0189300:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 4699775 4702959 4699775 ID=Msa0189300;Name=Msa0189300
chr2_1 mRNA 4699775 4702959 4699775 ID=Msa0189300-mRNA-1;Parent=Msa0189300;Name=Msa0189300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|1|1|7|271|228
chr2_1 exon 4699775 4700159 4699775 ID=Msa0189300-mRNA-1:exon:2117;Parent=Msa0189300-mRNA-1
chr2_1 exon 4700891 4700967 4700891 ID=Msa0189300-mRNA-1:exon:2116;Parent=Msa0189300-mRNA-1
chr2_1 exon 4701056 4701146 4701056 ID=Msa0189300-mRNA-1:exon:2115;Parent=Msa0189300-mRNA-1
chr2_1 exon 4701470 4701530 4701470 ID=Msa0189300-mRNA-1:exon:2114;Parent=Msa0189300-mRNA-1
chr2_1 exon 4701841 4701899 4701841 ID=Msa0189300-mRNA-1:exon:2113;Parent=Msa0189300-mRNA-1
chr2_1 exon 4702504 4702760 4702504 ID=Msa0189300-mRNA-1:exon:2112;Parent=Msa0189300-mRNA-1
chr2_1 exon 4702855 4702959 4702855 ID=Msa0189300-mRNA-1:exon:2111;Parent=Msa0189300-mRNA-1
chr2_1 five_prime_UTR 4702883 4702959 4702883 ID=Msa0189300-mRNA-1:five_prime_utr;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4702855 4702882 4702855 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4702504 4702760 4702504 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4701841 4701899 4701841 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4701470 4701530 4701470 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4701056 4701146 4701056 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4700891 4700967 4700891 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 CDS 4700046 4700159 4700046 ID=Msa0189300-mRNA-1:cds;Parent=Msa0189300-mRNA-1
chr2_1 three_prime_UTR 4699775 4700045 4699775 ID=Msa0189300-mRNA-1:three_prime_utr;Parent=Msa0189300-mRNA-1
Gene Sequence

>Msa0189300

ATGCCAAAATCTAAGAGAAACAAACAAGTTACACTCTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTGATAATTAATGGAATAAGAGACGCAGCTGAAAAATACAGTTCAATTTACGTTTTCAATTTTCAGAATATGAGAAATTCGAAATTGAAAGAGTTTAGGGAACAATTACAATCAAGTAGCAAGTTTTTTCTTGGATCTAACAAAGTAATGCAAGTTGCTATTGGTCGTTCTGCTTCTGATGAAATCAAACCCAATCTTCACAAAGTTTCAAAGCTATTGCGTGGAGATGCTGGAATGATTTTTACGAATTTGTCTAAAGAAGAAGTTGAAAGGCTGTTTAATGAATTTGAGGGATGCGACTTTGCAAGAACAGGAAGCATTGCCACCGAAAAAGTTGAACTCAAGGAGGGTCCTTTAGAGCAGTTCACACATGATATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGACTTTGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGTATACTGCGTTTGATGGGAAATATGATGGCTACGTTTCGACTGAACCTGGTTTGTAGATGGGGTTCTGAGGATGATTTTGAACTCTACATTGATGGGCCTGGCGATTCAGATGTTGAATGA

Protein sequence

>Msa0189300

MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQLQSSSKFFLGSNKVMQVAIGRSASDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEFEGCDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE*