AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231660 MtrunA17_Chr2g0278341 82.018 228 1 1 1 188 1 228 2.11e-131 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231660 AT1G25260.1 59.633 218 47 2 1 178 1 217 1.80e-85 252

Find 48 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTGCAAAATCAAAATT+AGG 0.130530 2_2:-3919456 None:intergenic
TGTTTGTTTCTCTTAGATTT+TGG 0.161156 2_2:+3919368 None:intergenic
ATTCGAAATTGAAAGAGTTT+AGG 0.242754 2_2:-3919129 Msa0231660:CDS
CTTTGAAACTTTGTGAAGAT+TGG 0.248050 2_2:+3919015 None:intergenic
TTCGAAATTGAAAGAGTTTA+GGG 0.248422 2_2:-3919128 Msa0231660:CDS
CACAAAGAATTGATAATTAA+TGG 0.257611 2_2:-3919214 Msa0231660:CDS
CCCTTGCAAAATCAAAATTA+GGG 0.300738 2_2:-3919455 None:intergenic
TGATAATATAAACTGAATAT+TGG 0.307619 2_2:+3916320 None:intergenic
CAGCAGGGATGTGGCTTGTA+TGG 0.319458 2_2:-3916390 Msa0231660:three_prime_UTR
AGAGCAGTTCACACATGATA+TGG 0.322264 2_2:-3917617 Msa0231660:CDS
GACTGAACCTGGTTTGTAGA+TGG 0.358071 2_2:-3916620 Msa0231660:CDS
TTTGAAACTTTGTGAAGATT+GGG 0.382034 2_2:+3919016 None:intergenic
ACCTGAAGCATCTCGTATAC+TGG 0.389289 2_2:-3917406 Msa0231660:intron
GAACAGGCATGCCTTGCTTC+CGG 0.401326 2_2:+3917584 None:intergenic
AAAGTAATGCAAGTTGCTAT+TGG 0.403753 2_2:-3919064 Msa0231660:CDS
AAAATTTGATTCTTAAGTTA+CGG 0.406742 2_2:+3916366 None:intergenic
GTACCTTTATTTAACCGAAC+AGG 0.425105 2_2:+3917568 None:intergenic
ATGCCTGTTCGGTTAAATAA+AGG 0.445190 2_2:-3917571 Msa0231660:intron
ACTGAACCTGGTTTGTAGAT+GGG 0.448280 2_2:-3916619 Msa0231660:CDS
ATGTTGAAGATTACAAGATA+TGG 0.449326 2_2:-3916518 Msa0231660:three_prime_UTR
ACCAGTATACGAGATGCTTC+AGG 0.450575 2_2:+3917405 None:intergenic
TCCAAAATTCACAGGTGTTG+TGG 0.453240 2_2:-3917475 Msa0231660:intron
GGAAGCAAGGCATGCCTGTT+CGG 0.453618 2_2:-3917582 Msa0231660:CDS
TCATGTGTGAACTGCTCTAA+AGG 0.461609 2_2:+3917622 None:intergenic
ATGCCTTGCTTCCGGAGAAA+AGG 0.467064 2_2:+3917592 None:intergenic
GGTGTGGATGCAATTTACTT+TGG 0.475626 2_2:-3916497 Msa0231660:three_prime_UTR
GTGGATGCAATTTACTTTGG+AGG 0.481220 2_2:-3916494 Msa0231660:three_prime_UTR
CAATCTTCACAAAGTTTCAA+AGG 0.483461 2_2:-3919014 Msa0231660:intron
GACTTTGTTGTTTGTGAGGA+GGG 0.491569 2_2:-3917441 Msa0231660:CDS
GGCTACGTTTCGACTGAACC+TGG 0.495680 2_2:-3916631 Msa0231660:CDS
GAACTCTACATTGATGGGCC+TGG 0.523108 2_2:-3916579 Msa0231660:CDS
CTGAACCTGGTTTGTAGATG+GGG 0.535144 2_2:-3916618 Msa0231660:CDS
CATTCAACATCTGAATCGCC+AGG 0.535824 2_2:+3916561 None:intergenic
GATACAGTACTATGTAGTAT+TGG 0.536486 2_2:-3916456 Msa0231660:three_prime_UTR
ACTGTTTCAGGTTGAACTCA+AGG 0.537015 2_2:-3917650 Msa0231660:intron
AAGATTTCACAGTCACATTG+AGG 0.539106 2_2:-3919421 Msa0231660:five_prime_UTR
GCGTTTGATGGGAAATATGA+TGG 0.540790 2_2:-3916652 Msa0231660:CDS
AGATTTCACAGTCACATTGA+GGG 0.542820 2_2:-3919420 Msa0231660:five_prime_UTR
TTCTGACTTTGTTGTTTGTG+AGG 0.545701 2_2:-3917445 Msa0231660:CDS
TGACTTTGTTGTTTGTGAGG+AGG 0.559551 2_2:-3917442 Msa0231660:CDS
CAGAACCCCATCTACAAACC+AGG 0.589817 2_2:+3916613 None:intergenic
CGAGATGCTTCAGGTGACAA+AGG 0.595978 2_2:+3917414 None:intergenic
GGTTTGTAGATGGGGTTCTG+AGG 0.610326 2_2:-3916610 Msa0231660:CDS
AGTACTGTATCACTACATCA+AGG 0.640398 2_2:+3916468 None:intergenic
TTTCAGGTTGAACTCAAGGA+GGG 0.645581 2_2:-3917646 Msa0231660:intron
GAAGATTACAAGATATGGTG+TGG 0.670814 2_2:-3916513 Msa0231660:three_prime_UTR
GTTTCAGGTTGAACTCAAGG+AGG 0.696156 2_2:-3917647 Msa0231660:intron
AAATCTAAGAGAAACAAACA+AGG 0.734245 2_2:-3919365 Msa0231660:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTATTTTTTTGTTG+TGG - chr2_2:3916775-3916794 Msa0231660:intron 15.0%
!! AAAAAAAAAATCAAACCAAA+CGG + chr2_2:3916950-3916969 None:intergenic 15.0%
!! ATATTCATAAAAAATGTAAG+AGG + chr2_2:3917293-3917312 None:intergenic 15.0%
!!! TTTTTATTGATGCTATTTAT+AGG - chr2_2:3917691-3917710 Msa0231660:intron 15.0%
!!! TCATTTTCTTAAATTATTAC+CGG + chr2_2:3917891-3917910 None:intergenic 15.0%
!! ACATAAAAATGAAAGATATA+GGG + chr2_2:3918628-3918647 None:intergenic 15.0%
!! TACATAAAAATGAAAGATAT+AGG + chr2_2:3918629-3918648 None:intergenic 15.0%
!! AACTAAAAAGTAATTAATGA+TGG + chr2_2:3918772-3918791 None:intergenic 15.0%
!! AAAATTTGATTCTTAAGTTA+CGG + chr2_2:3919374-3919393 None:intergenic 15.0%
!! TGATAATATAAACTGAATAT+TGG + chr2_2:3919420-3919439 None:intergenic 15.0%
!!! CACAAAGAATTGATAATTAA+TGG - chr2_2:3916523-3916542 Msa0231660:three_prime_UTR 20.0%
!!! ATGTGATTTTGATTAGTTTT+TGG - chr2_2:3916807-3916826 Msa0231660:intron 20.0%
!!! ATGCAAATAAATAAGCTTTT+AGG - chr2_2:3916995-3917014 Msa0231660:intron 20.0%
!!! TTTTTGAAAATCTGTAACAA+AGG - chr2_2:3917195-3917214 Msa0231660:intron 20.0%
!! CAAATTTAATGTACGATTAT+TGG - chr2_2:3917448-3917467 Msa0231660:CDS 20.0%
!!! AATTTTGCTTGAATAAACAT+TGG - chr2_2:3917584-3917603 Msa0231660:CDS 20.0%
!! AAATAGCATCAATAAAAATC+AGG + chr2_2:3917689-3917708 None:intergenic 20.0%
!! AAGAAAATGACATAATTGAA+TGG - chr2_2:3917901-3917920 Msa0231660:intron 20.0%
!! GAAATTAGTAACACTAAATA+TGG + chr2_2:3918525-3918544 None:intergenic 20.0%
!!! TATTTAGTGTTACTAATTTC+AGG - chr2_2:3918525-3918544 Msa0231660:intron 20.0%
!! AAAAAGTAATTAATGATGGT+GGG + chr2_2:3918768-3918787 None:intergenic 20.0%
!! TAAAAAGTAATTAATGATGG+TGG + chr2_2:3918769-3918788 None:intergenic 20.0%
!! TTACTATTGAGAATTTAACA+AGG + chr2_2:3918914-3918933 None:intergenic 20.0%
!! ATTAATTACTTCAATAACCA+AGG + chr2_2:3918957-3918976 None:intergenic 20.0%
!!! TTGAAGTAATTAATTAGTCT+CGG - chr2_2:3918963-3918982 Msa0231660:intron 20.0%
!! TGATGTACATACTATAATAA+TGG + chr2_2:3919024-3919043 None:intergenic 20.0%
!!! TTGTGAACTAGAAATATTTT+TGG - chr2_2:3919392-3919411 Msa0231660:exon 20.0%
!!! TGTTTGTTTCTCTTAGATTT+TGG + chr2_2:3916372-3916391 None:intergenic 25.0%
! AAATCTAAGAGAAACAAACA+AGG - chr2_2:3916372-3916391 Msa0231660:three_prime_UTR 25.0%
! ATTCGAAATTGAAAGAGTTT+AGG - chr2_2:3916608-3916627 Msa0231660:CDS 25.0%
! TTCGAAATTGAAAGAGTTTA+GGG - chr2_2:3916609-3916628 Msa0231660:CDS 25.0%
!! TTTGAAACTTTGTGAAGATT+GGG + chr2_2:3916724-3916743 None:intergenic 25.0%
!!! TTGGAGATTTTTAAGAAAAG+CGG - chr2_2:3916826-3916845 Msa0231660:intron 25.0%
! AGCTAAAATTGTATCTTCAT+CGG - chr2_2:3917038-3917057 Msa0231660:intron 25.0%
! TATTATTGATAAGCTTGTCA+AGG + chr2_2:3917083-3917102 None:intergenic 25.0%
! TATAGTAGCTGATATTCAAT+TGG - chr2_2:3917516-3917535 Msa0231660:intron 25.0%
!! CTGATATTCAATTGGTAATT+TGG - chr2_2:3917524-3917543 Msa0231660:intron 25.0%
!!! ATCGTTAACCTTTTTCAATA+GGG - chr2_2:3917607-3917626 Msa0231660:CDS 25.0%
! ATTATAGGTTTCTACTAACA+AGG + chr2_2:3917828-3917847 None:intergenic 25.0%
!! ACTCATTCAATTAAAAGTGT+TGG - chr2_2:3917959-3917978 Msa0231660:intron 25.0%
!!! GTCAATTATTAGTCTTCAAT+TGG + chr2_2:3918239-3918258 None:intergenic 25.0%
! TAAAAATGAAAGATATAGGG+AGG + chr2_2:3918625-3918644 None:intergenic 25.0%
! CAAACAAGAAAAAATCAATG+GGG + chr2_2:3918677-3918696 None:intergenic 25.0%
! CCAAACAAGAAAAAATCAAT+GGG + chr2_2:3918678-3918697 None:intergenic 25.0%
!!! CCATTGATTTTTTCTTGTTT+GGG - chr2_2:3918676-3918695 Msa0231660:intron 25.0%
! GAAATGGAGAGAATAATAAA+TGG - chr2_2:3918831-3918850 Msa0231660:intron 25.0%
!! TATAATAATGGTGCTAATTG+AGG + chr2_2:3919012-3919031 None:intergenic 25.0%
!! ATTTTGAACTCTACATTGAT+GGG - chr2_2:3919153-3919172 Msa0231660:CDS 25.0%
! ATGTTGAAGATTACAAGATA+TGG - chr2_2:3919219-3919238 Msa0231660:CDS 25.0%
!! GATTTTGGCATTTTGAACTA+TGG + chr2_2:3916357-3916376 None:intergenic 30.0%
CTTTCAAAGACAACGAAAAA+AGG - chr2_2:3916493-3916512 Msa0231660:three_prime_UTR 30.0%
!!! TCAAGTAGCAAGTTTTTTCT+TGG - chr2_2:3916643-3916662 Msa0231660:CDS 30.0%
AAAGTAATGCAAGTTGCTAT+TGG - chr2_2:3916673-3916692 Msa0231660:intron 30.0%
!! CTTTGAAACTTTGTGAAGAT+TGG + chr2_2:3916725-3916744 None:intergenic 30.0%
CAATCTTCACAAAGTTTCAA+AGG - chr2_2:3916723-3916742 Msa0231660:intron 30.0%
!! ATTTTCTGAGAAGCTACTAA+TGG - chr2_2:3916923-3916942 Msa0231660:intron 30.0%
!! TTTTCTGAGAAGCTACTAAT+GGG - chr2_2:3916924-3916943 Msa0231660:intron 30.0%
ACAAAATAAGCCAATCCAAA+CGG - chr2_2:3917132-3917151 Msa0231660:intron 30.0%
!!! CATTTGAGAAGTTGTTTTTC+AGG + chr2_2:3917159-3917178 None:intergenic 30.0%
TGTCTAAAGAAGAAGTTGAA+AGG - chr2_2:3917381-3917400 Msa0231660:intron 30.0%
TGATATGCTAAACATGTTTC+TGG - chr2_2:3917555-3917574 Msa0231660:intron 30.0%
GATATGCTAAACATGTTTCT+GGG - chr2_2:3917556-3917575 Msa0231660:intron 30.0%
! ATATGCTAAACATGTTTCTG+GGG - chr2_2:3917557-3917576 Msa0231660:intron 30.0%
!!! GATCGTTAACCTTTTTCAAT+AGG - chr2_2:3917606-3917625 Msa0231660:CDS 30.0%
!!! TCGTTAACCTTTTTCAATAG+GGG - chr2_2:3917608-3917627 Msa0231660:CDS 30.0%
CATCAATAAAAATCAGGTTC+TGG + chr2_2:3917683-3917702 None:intergenic 30.0%
TAGGCTGTTTAATGAATTTG+AGG - chr2_2:3917710-3917729 Msa0231660:intron 30.0%
AGGCTGTTTAATGAATTTGA+GGG - chr2_2:3917711-3917730 Msa0231660:intron 30.0%
!!! CTAGATTCAACCTACTTTTT+CGG + chr2_2:3917769-3917788 None:intergenic 30.0%
!! CTTTTAATTGAATGAGTGTC+TGG + chr2_2:3917956-3917975 None:intergenic 30.0%
!! ATTATTAGTCTTCAATTGGC+AGG + chr2_2:3918235-3918254 None:intergenic 30.0%
GGATAATGTGAACAATCAAA+TGG + chr2_2:3918656-3918675 None:intergenic 30.0%
!!! CCCATTGATTTTTTCTTGTT+TGG - chr2_2:3918675-3918694 Msa0231660:intron 30.0%
CCCAAACAAGAAAAAATCAA+TGG + chr2_2:3918679-3918698 None:intergenic 30.0%
!!! TTGATTTTTTCTTGTTTGGG+TGG - chr2_2:3918679-3918698 Msa0231660:intron 30.0%
!!! TGATTTTTTCTTGTTTGGGT+GGG - chr2_2:3918680-3918699 Msa0231660:intron 30.0%
TTGACACATAAAATAGACAG+TGG - chr2_2:3918723-3918742 Msa0231660:intron 30.0%
TGACACATAAAATAGACAGT+GGG - chr2_2:3918724-3918743 Msa0231660:intron 30.0%
ACATCATCAACGTTATAATG+TGG - chr2_2:3919038-3919057 Msa0231660:CDS 30.0%
! GATTTTGAACTCTACATTGA+TGG - chr2_2:3919152-3919171 Msa0231660:CDS 30.0%
GATACAGTACTATGTAGTAT+TGG - chr2_2:3919281-3919300 Msa0231660:intron 30.0%
! TTGATGAATGTATTTTCAGC+AGG - chr2_2:3919331-3919350 Msa0231660:intron 30.0%
! TGATGAATGTATTTTCAGCA+GGG - chr2_2:3919332-3919351 Msa0231660:intron 30.0%
AAGATTTCACAGTCACATTG+AGG - chr2_2:3916316-3916335 Msa0231660:three_prime_UTR 35.0%
AGATTTCACAGTCACATTGA+GGG - chr2_2:3916317-3916336 Msa0231660:three_prime_UTR 35.0%
! TTTGGCATTTTGAACTATGG+AGG + chr2_2:3916354-3916373 None:intergenic 35.0%
AAGACAACGAAAAAAGGAAG+AGG - chr2_2:3916499-3916518 Msa0231660:three_prime_UTR 35.0%
CAAAATAAGCCAATCCAAAC+GGG - chr2_2:3917133-3917152 Msa0231660:intron 35.0%
!!! CGTTAACCTTTTTCAATAGG+GGG - chr2_2:3917609-3917628 Msa0231660:CDS 35.0%
!!! GTTAACCTTTTTCAATAGGG+GGG - chr2_2:3917610-3917629 Msa0231660:CDS 35.0%
TTGAATGGAATCACACATGT+CGG - chr2_2:3917916-3917935 Msa0231660:intron 35.0%
!! TAAAAGTGTTGGTGCTACAA+AGG - chr2_2:3917970-3917989 Msa0231660:intron 35.0%
TTTCAAGATCTGACTGTTTC+AGG - chr2_2:3918075-3918094 Msa0231660:intron 35.0%
! ATGATATGGAACCTTTTCTC+CGG - chr2_2:3918134-3918153 Msa0231660:intron 35.0%
ATGCCTGTTCGGTTAAATAA+AGG - chr2_2:3918166-3918185 Msa0231660:intron 35.0%
! GTACCTTTATTTAACCGAAC+AGG + chr2_2:3918172-3918191 None:intergenic 35.0%
TTGACGTTTCCAAAATTCAC+AGG - chr2_2:3918254-3918273 Msa0231660:intron 35.0%
!! TTCTGACTTTGTTGTTTGTG+AGG - chr2_2:3918292-3918311 Msa0231660:intron 35.0%
CCTGATATTGCAAGTTCTAT+TGG + chr2_2:3918420-3918439 None:intergenic 35.0%
CCAATAGAACTTGCAATATC+AGG - chr2_2:3918417-3918436 Msa0231660:intron 35.0%
ATAGGCAGGAAGTAGTTATT+AGG + chr2_2:3918491-3918510 None:intergenic 35.0%
TAATAACTACTTCCTGCCTA+TGG - chr2_2:3918490-3918509 Msa0231660:intron 35.0%
AATAACTACTTCCTGCCTAT+GGG - chr2_2:3918491-3918510 Msa0231660:intron 35.0%
AATATGGTCGAATAACCCAT+AGG + chr2_2:3918509-3918528 None:intergenic 35.0%
TGTGTCTATATCTCTCCAAA+TGG - chr2_2:3918806-3918825 Msa0231660:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_2:3918815-3918834 Msa0231660:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_2:3918824-3918843 None:intergenic 35.0%
GGAGAGAATAATAAATGGAG+AGG - chr2_2:3918836-3918855 Msa0231660:intron 35.0%
AATAACCAAGGTCAAGATGT+TGG + chr2_2:3918945-3918964 None:intergenic 35.0%
GAAGATTACAAGATATGGTG+TGG - chr2_2:3919224-3919243 Msa0231660:CDS 35.0%
AGTACTGTATCACTACATCA+AGG + chr2_2:3919272-3919291 None:intergenic 35.0%
!! GTTTTGTTACAGCTATTGCG+TGG - chr2_2:3917332-3917351 Msa0231660:intron 40.0%
GAAAACCCCCCTATTGAAAA+AGG + chr2_2:3917618-3917637 None:intergenic 40.0%
!!! GATTCAACCTACTTTTTCGG+TGG + chr2_2:3917766-3917785 None:intergenic 40.0%
TGTCTGTGTAGGTGCATTAT+AGG + chr2_2:3917843-3917862 None:intergenic 40.0%
!! TCGACATGTCAGTGTTGTTT+CGG + chr2_2:3917866-3917885 None:intergenic 40.0%
!! ACTGTTTCAGGTTGAACTCA+AGG - chr2_2:3918087-3918106 Msa0231660:intron 40.0%
!! TTTCAGGTTGAACTCAAGGA+GGG - chr2_2:3918091-3918110 Msa0231660:intron 40.0%
TCATGTGTGAACTGCTCTAA+AGG + chr2_2:3918118-3918137 None:intergenic 40.0%
AGAGCAGTTCACACATGATA+TGG - chr2_2:3918120-3918139 Msa0231660:intron 40.0%
! TCCAAAATTCACAGGTGTTG+TGG - chr2_2:3918262-3918281 Msa0231660:intron 40.0%
! TCCACAACACCTGTGAATTT+TGG + chr2_2:3918266-3918285 None:intergenic 40.0%
!! TGACTTTGTTGTTTGTGAGG+AGG - chr2_2:3918295-3918314 Msa0231660:intron 40.0%
!! GACTTTGTTGTTTGTGAGGA+GGG - chr2_2:3918296-3918315 Msa0231660:intron 40.0%
AGTTGAAGTTGCACTACTCT+AGG - chr2_2:3918448-3918467 Msa0231660:intron 40.0%
GTTGAAGTTGCACTACTCTA+GGG - chr2_2:3918449-3918468 Msa0231660:intron 40.0%
ACTCCACTTCGTTCTATCTT+TGG + chr2_2:3918551-3918570 None:intergenic 40.0%
AAGATAGAACGAAGTGGAGT+AGG - chr2_2:3918551-3918570 Msa0231660:intron 40.0%
AGTGGGTCCTACTATTATGT+GGG - chr2_2:3918741-3918760 Msa0231660:intron 40.0%
TCTATCCAACATCTTGACCT+TGG - chr2_2:3918937-3918956 Msa0231660:intron 40.0%
! TGCTTTTGACAGCGTTTGAT+GGG - chr2_2:3919074-3919093 Msa0231660:CDS 40.0%
GCGTTTGATGGGAAATATGA+TGG - chr2_2:3919085-3919104 Msa0231660:CDS 40.0%
! ACTGAACCTGGTTTGTAGAT+GGG - chr2_2:3919118-3919137 Msa0231660:CDS 40.0%
GGTGTGGATGCAATTTACTT+TGG - chr2_2:3919240-3919259 Msa0231660:CDS 40.0%
GTGGATGCAATTTACTTTGG+AGG - chr2_2:3919243-3919262 Msa0231660:CDS 40.0%
! ATGTATTTTCAGCAGGGATG+TGG - chr2_2:3919338-3919357 Msa0231660:intron 40.0%
!!! TTTTTCAGGCCCGTTTGGAT+TGG + chr2_2:3917145-3917164 None:intergenic 45.0%
!!! AGTTGTTTTTCAGGCCCGTT+TGG + chr2_2:3917150-3917169 None:intergenic 45.0%
AGCATTGCCACCGAAAAAGT+AGG - chr2_2:3917756-3917775 Msa0231660:intron 45.0%
!! TGTTGTTTCGGTGTCTGTGT+AGG + chr2_2:3917854-3917873 None:intergenic 45.0%
GAGCAACTACAGGATATGTC+AGG + chr2_2:3918011-3918030 None:intergenic 45.0%
!! GTTTCAGGTTGAACTCAAGG+AGG - chr2_2:3918090-3918109 Msa0231660:intron 45.0%
! ACCTGAAGCATCTCGTATAC+TGG - chr2_2:3918331-3918350 Msa0231660:intron 45.0%
ACCAGTATACGAGATGCTTC+AGG + chr2_2:3918335-3918354 None:intergenic 45.0%
TAGCACAGAGCAGAGGATTT+GGG + chr2_2:3918373-3918392 None:intergenic 45.0%
ATAGCACAGAGCAGAGGATT+TGG + chr2_2:3918374-3918393 None:intergenic 45.0%
! TGTGCTGGCGAACATAAATG+TGG - chr2_2:3918393-3918412 Msa0231660:intron 45.0%
AGGCCAAAGATAGAACGAAG+TGG - chr2_2:3918545-3918564 Msa0231660:intron 45.0%
TTTGGGTGGGTAGTGCAATT+TGG - chr2_2:3918693-3918712 Msa0231660:intron 45.0%
CAGTGGGTCCTACTATTATG+TGG - chr2_2:3918740-3918759 Msa0231660:intron 45.0%
ATGGAGAGGATCTTAACTCG+TGG - chr2_2:3918850-3918869 Msa0231660:intron 45.0%
TGGAGAGGATCTTAACTCGT+GGG - chr2_2:3918851-3918870 Msa0231660:intron 45.0%
!! CTGCTTTTGACAGCGTTTGA+TGG - chr2_2:3919073-3919092 Msa0231660:CDS 45.0%
! GACTGAACCTGGTTTGTAGA+TGG - chr2_2:3919117-3919136 Msa0231660:CDS 45.0%
! CTGAACCTGGTTTGTAGATG+GGG - chr2_2:3919119-3919138 Msa0231660:CDS 45.0%
CATTCAACATCTGAATCGCC+AGG + chr2_2:3919179-3919198 None:intergenic 45.0%
! GAAGCTACTAATGGGCCGTT+TGG - chr2_2:3916932-3916951 Msa0231660:intron 50.0%
GGATGCGACTTTGCAAGAAC+AGG - chr2_2:3917732-3917751 Msa0231660:intron 50.0%
CAACACTGACATGTCGACAC+CGG - chr2_2:3917869-3917888 Msa0231660:intron 50.0%
CCAGATGCATGAGCAACTAC+AGG + chr2_2:3918021-3918040 None:intergenic 50.0%
CCTGTAGTTGCTCATGCATC+TGG - chr2_2:3918018-3918037 Msa0231660:intron 50.0%
! GAACCTTTTCTCCGGAAGCA+AGG - chr2_2:3918142-3918161 Msa0231660:intron 50.0%
ATGCCTTGCTTCCGGAGAAA+AGG + chr2_2:3918148-3918167 None:intergenic 50.0%
CGAGATGCTTCAGGTGACAA+AGG + chr2_2:3918326-3918345 None:intergenic 50.0%
TGGTCGAATAACCCATAGGC+AGG + chr2_2:3918505-3918524 None:intergenic 50.0%
GGTGGGACCCACATAATAGT+AGG + chr2_2:3918751-3918770 None:intergenic 50.0%
GGAGAGGATCTTAACTCGTG+GGG - chr2_2:3918852-3918871 Msa0231660:intron 50.0%
GAGAGGATCTTAACTCGTGG+GGG - chr2_2:3918853-3918872 Msa0231660:intron 50.0%
CAGAACCCCATCTACAAACC+AGG + chr2_2:3919127-3919146 None:intergenic 50.0%
GGTTTGTAGATGGGGTTCTG+AGG - chr2_2:3919127-3919146 Msa0231660:CDS 50.0%
! GAACTCTACATTGATGGGCC+TGG - chr2_2:3919158-3919177 Msa0231660:CDS 50.0%
CAGCTATTGCGTGGAGATGC+TGG - chr2_2:3917341-3917360 Msa0231660:intron 55.0%
GAACAGGCATGCCTTGCTTC+CGG + chr2_2:3918156-3918175 None:intergenic 55.0%
GGAAGCAAGGCATGCCTGTT+CGG - chr2_2:3918155-3918174 Msa0231660:intron 55.0%
CAGCACATAGCACAGAGCAG+AGG + chr2_2:3918380-3918399 None:intergenic 55.0%
CTCTGCTCTGTGCTATGTGC+TGG - chr2_2:3918378-3918397 Msa0231660:intron 55.0%
GGCTACGTTTCGACTGAACC+TGG - chr2_2:3919106-3919125 Msa0231660:CDS 55.0%
! CAGCAGGGATGTGGCTTGTA+TGG - chr2_2:3919347-3919366 Msa0231660:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3916289 3919470 3916289 ID=Msa0231660;Name=Msa0231660
chr2_2 mRNA 3916289 3919470 3916289 ID=Msa0231660-mRNA-1;Parent=Msa0231660;Name=Msa0231660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=77|0.75|1|1|1|1|5|271|188
chr2_2 exon 3916289 3916673 3916289 ID=Msa0231660-mRNA-1:exon:1631;Parent=Msa0231660-mRNA-1
chr2_2 exon 3917407 3917483 3917407 ID=Msa0231660-mRNA-1:exon:1630;Parent=Msa0231660-mRNA-1
chr2_2 exon 3917572 3917662 3917572 ID=Msa0231660-mRNA-1:exon:1629;Parent=Msa0231660-mRNA-1
chr2_2 exon 3919015 3919271 3919015 ID=Msa0231660-mRNA-1:exon:1628;Parent=Msa0231660-mRNA-1
chr2_2 exon 3919366 3919470 3919366 ID=Msa0231660-mRNA-1:exon:1627;Parent=Msa0231660-mRNA-1
chr2_2 five_prime_UTR 3919394 3919470 3919394 ID=Msa0231660-mRNA-1:five_prime_utr;Parent=Msa0231660-mRNA-1
chr2_2 CDS 3919366 3919393 3919366 ID=Msa0231660-mRNA-1:cds;Parent=Msa0231660-mRNA-1
chr2_2 CDS 3919015 3919271 3919015 ID=Msa0231660-mRNA-1:cds;Parent=Msa0231660-mRNA-1
chr2_2 CDS 3917572 3917662 3917572 ID=Msa0231660-mRNA-1:cds;Parent=Msa0231660-mRNA-1
chr2_2 CDS 3917407 3917483 3917407 ID=Msa0231660-mRNA-1:cds;Parent=Msa0231660-mRNA-1
chr2_2 CDS 3916560 3916673 3916560 ID=Msa0231660-mRNA-1:cds;Parent=Msa0231660-mRNA-1
chr2_2 three_prime_UTR 3916289 3916559 3916289 ID=Msa0231660-mRNA-1:three_prime_utr;Parent=Msa0231660-mRNA-1
Gene Sequence

>Msa0231660

ATGCCAAAATCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTGATAATTAATGGAATAAGAGACGCAGCTGAAAAATACAGTTCAATTTACGTTTTCAATTTTCAGAATATGAGAAATTCGAAATTGAAAGAGTTTAGGGAACAATTACAATCAAGTAGCAAGTTTTTTCTTGGATCTAACAAAGTAATGCAAGTTGCTATTGGTCGTTCTGCTTCTGATGAAATCAAACCCAATCTTCACAAAGTTTCAAAGGTTGAACTCAAGGAGGGTCCTTTAGAGCAGTTCACACATGATATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGACTTTGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGTATACTGCGTTTGATGGGAAATATGATGGCTACGTTTCGACTGAACCTGGTTTGTAGATGGGGTTCTGAGGATGATTTTGAACTCTACATTGATGGGCCTGGCGATTCAGATGTTGAATGA

Protein sequence

>Msa0231660

MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQLQSSSKFFLGSNKVMQVAIGRSASDEIKPNLHKVSKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE*