AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033260 MtrunA17_Chr1g0191671 94.692 584 11 9 1 571 1 577 0.0 1034
Msa0033260 MtrunA17_Chr2g0287751 68.354 79 25 0 1 79 1 79 1.60e-29 122
Msa0033260 MtrunA17_Chr1g0208301 66.667 78 23 1 1 75 1 78 3.77e-28 116
Msa0033260 MtrunA17_Chr0c22g0493881 64.103 78 28 0 1 78 1 78 7.51e-27 112
Msa0033260 MtrunA17_Chr4g0065651 64.103 78 28 0 1 78 1 78 8.84e-27 114
Msa0033260 MtrunA17_Chr4g0065621 64.103 78 28 0 1 78 1 78 5.29e-26 110
Msa0033260 MtrunA17_Chr2g0287741 54.945 91 39 1 12 102 17 105 6.61e-20 93.6
Msa0033260 MtrunA17_Chr7g0269081 57.143 70 30 0 5 74 17 86 1.34e-19 89.7
Msa0033260 MtrunA17_Chr3g0111541 52.113 71 34 0 3 73 5 75 1.12e-18 85.1
Msa0033260 MtrunA17_Chr4g0067291 55.224 67 30 0 7 73 71 137 4.19e-18 86.3
Msa0033260 MtrunA17_Chr7g0272571 54.545 66 30 0 9 74 32 97 3.08e-17 83.6
Msa0033260 MtrunA17_Chr1g0192131 52.174 69 32 1 7 74 12 80 1.28e-16 82.0
Msa0033260 MtrunA17_Chr8g0382721 60.656 61 24 0 14 74 33 93 4.26e-15 72.8
Msa0033260 MtrunA17_Chr2g0296001 54.412 68 31 0 7 74 70 137 4.38e-14 73.9
Msa0033260 MtrunA17_Chr3g0124411 54.545 66 30 0 9 74 29 94 4.42e-14 70.1
Msa0033260 MtrunA17_Chr2g0285561 39.474 76 45 1 4 78 2 77 9.39e-13 69.3
Msa0033260 MtrunA17_Chr6g0448861 41.791 67 38 1 9 74 29 95 1.18e-12 65.9
Msa0033260 MtrunA17_Chr1g0189221 43.243 74 42 0 1 74 44 117 4.44e-12 65.1
Msa0033260 MtrunA17_Chr5g0407821 40.278 72 43 0 3 74 16 87 6.68e-12 63.5
Msa0033260 MtrunA17_Chr4g0036931 41.096 73 42 1 3 74 21 93 8.62e-12 63.5
Msa0033260 MtrunA17_Chr7g0251491 40.541 74 43 1 2 74 40 113 9.29e-12 63.9
Msa0033260 MtrunA17_Chr5g0405811 42.647 68 38 1 8 74 27 94 1.58e-11 62.8
Msa0033260 MtrunA17_Chr4g0050571 44.286 70 38 1 10 79 101 169 2.99e-11 62.4
Msa0033260 MtrunA17_Chr1g0160201 39.394 66 40 0 9 74 24 89 3.33e-11 61.6
Msa0033260 MtrunA17_Chr3g0115421 37.349 83 49 1 14 93 30 112 3.84e-11 61.6
Msa0033260 MtrunA17_Chr2g0325601 41.026 78 45 1 14 91 6 82 4.43e-11 61.2
Msa0033260 MtrunA17_Chr1g0198341 42.647 68 39 0 7 74 1 68 5.09e-11 58.9
Msa0033260 MtrunA17_Chr3g0094841 47.761 67 34 1 9 74 115 181 6.26e-11 62.8
Msa0033260 MtrunA17_Chr5g0422891 40.323 62 37 0 14 75 29 90 9.08e-11 60.5
Msa0033260 MtrunA17_Chr6g0485081 41.176 68 39 1 7 74 62 128 9.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033260 AT5G19090.2 63.366 101 36 1 1 101 1 100 1.59e-32 130
Msa0033260 AT5G19090.3 63.366 101 36 1 1 101 1 100 1.59e-32 130
Msa0033260 AT5G19090.5 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0033260 AT5G19090.4 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0033260 AT5G19090.1 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0033260 AT3G05220.1 57.143 112 43 1 1 112 1 107 1.90e-29 123
Msa0033260 AT1G23000.1 47.656 128 54 4 6 132 9 124 6.41e-24 103
Msa0033260 AT1G23000.2 47.656 128 54 4 6 132 69 184 2.44e-23 103
Msa0033260 AT5G27690.1 47.059 85 45 0 7 91 27 111 2.98e-22 99.0
Msa0033260 AT5G37860.1 58.462 65 27 0 9 73 9 73 5.70e-19 87.4
Msa0033260 AT1G56210.1 58.730 63 26 0 10 72 40 102 2.28e-17 84.3
Msa0033260 AT1G06330.1 50.820 61 30 0 14 74 6 66 1.27e-13 68.9
Msa0033260 AT4G08570.1 47.059 68 35 1 8 74 24 91 5.41e-13 67.4
Msa0033260 AT1G22990.1 41.975 81 44 2 3 82 24 102 6.30e-12 64.3
Msa0033260 AT2G37390.2 47.692 65 33 1 10 74 180 243 7.44e-12 66.2
Msa0033260 AT2G37390.1 47.692 65 33 1 10 74 181 244 7.46e-12 66.2
Msa0033260 AT3G02960.1 41.892 74 42 1 3 75 119 192 1.51e-11 65.1
Msa0033260 AT5G02600.2 49.231 65 32 1 10 74 250 313 2.08e-11 65.9
Msa0033260 AT5G02600.1 49.231 65 32 1 10 74 250 313 2.08e-11 65.9
Msa0033260 AT1G22990.2 42.254 71 40 1 13 82 27 97 2.61e-11 62.4
Msa0033260 AT4G23882.1 46.970 66 34 1 9 73 77 142 3.34e-11 64.7
Msa0033260 AT1G71050.1 40.909 66 39 0 9 74 27 92 3.36e-11 62.0
Msa0033260 AT3G56891.1 45.902 61 33 0 14 74 20 80 4.56e-11 62.0
Msa0033260 AT5G17450.1 42.424 66 38 0 9 74 25 90 6.42e-11 61.2

Find 185 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCAACAAAATTTAA+TGG 0.134800 1_1:-60710737 None:intergenic
AGTAGTGGCTAGTTTGTTTC+AGG 0.151067 1_1:+60710684 Msa0033260:three_prime_UTR
AGGAAAATGTGCAAGATTTA+AGG 0.169787 1_1:+60710760 Msa0033260:three_prime_UTR
ATTATTACCATGTCCATTAT+TGG 0.170658 1_1:-60710164 None:intergenic
GAAGAAATCATACAATTTAA+TGG 0.241291 1_1:-60710937 None:intergenic
GGGCCTCCAGGCAATGGATT+TGG 0.269551 1_1:+60709512 Msa0033260:CDS
ACATCCATCAATGAACTATA+TGG 0.284194 1_1:+60710558 Msa0033260:CDS
GCCAAGGGCAATGCCAATAA+TGG 0.314955 1_1:+60710151 Msa0033260:CDS
GATGGAGGTAAGAAGAATAA+AGG 0.317363 1_1:+60709803 Msa0033260:CDS
TGCTGTTGCTGTTGCTGATA+AGG 0.318669 1_1:-60710391 None:intergenic
CTAGTTAAGTTTCTAGGGCT+TGG 0.332945 1_1:+60709920 Msa0033260:CDS
CAGGGAAACATGCTGAACTA+TGG 0.336084 1_1:+60709153 Msa0033260:CDS
AAGAAATCATACAATTTAAT+GGG 0.336801 1_1:-60710936 None:intergenic
CTGCCGGCATGCTCCTCATT+TGG 0.337899 1_1:-60710291 None:intergenic
TGCTGTTGCTGATAAGGATT+TGG 0.339759 1_1:-60710385 None:intergenic
GCCGGCAGTGCAAGGGTTAC+CGG 0.341648 1_1:+60710306 Msa0033260:CDS
AATGGACATGGTAATAATAA+TGG 0.358191 1_1:+60710169 Msa0033260:CDS
AGAAGAGAAGAAATAGTTGT+TGG 0.363777 1_1:-60708418 None:intergenic
ACAAGATATGATGAAAATTC+AGG 0.364742 1_1:+60708486 Msa0033260:CDS
GGCCTCCAGGCAATGGATTT+GGG 0.369230 1_1:+60709513 Msa0033260:CDS
GGGGAAAAGCAAAAGGGTGG+TGG 0.371759 1_1:+60709824 Msa0033260:CDS
CAGAATCAAAAGGGTCAAAA+AGG 0.373373 1_1:+60709287 Msa0033260:CDS
GGGGCAGCTGCGGCGATGAA+TGG 0.373441 1_1:+60710331 Msa0033260:CDS
ATGGTAATAATAATGGTAAT+GGG 0.379392 1_1:+60710176 Msa0033260:CDS
ACCATTACCTGGGATGTTCA+TGG 0.380238 1_1:-60709639 None:intergenic
AACATGTTTCTGAGATTTGT+TGG 0.389321 1_1:-60709366 None:intergenic
CCTCCTCCTTTACCATTACC+TGG 0.392465 1_1:-60709650 None:intergenic
ATGGAGGTAAGAAGAATAAA+GGG 0.400340 1_1:+60709804 Msa0033260:CDS
GAGGATGAAGAAGAGGAGTT+TGG 0.403036 1_1:+60709461 Msa0033260:CDS
TCTGATTCATTGCACCCATC+TGG 0.405299 1_1:-60710219 None:intergenic
GAAAAGCAAAAGGGTGGTGG+GGG 0.405813 1_1:+60709827 Msa0033260:CDS
AAAAGTGGTAAGGGTGGAAA+TGG 0.412152 1_1:+60710103 Msa0033260:CDS
CAGTGCAAGGGTTACCGGCC+GGG 0.416864 1_1:+60710311 Msa0033260:CDS
TCCATTATTGGCATTGCCCT+TGG 0.417589 1_1:-60710152 None:intergenic
GGAAAAGCAAAAGGGTGGTG+GGG 0.418059 1_1:+60709826 Msa0033260:CDS
GCCGGTAACCCTTGCACTGC+CGG 0.421629 1_1:-60710307 None:intergenic
CATGGTAATAATAATGGTAA+TGG 0.423098 1_1:+60710175 Msa0033260:CDS
TAGAGGCAAAAGGGTATTGT+TGG 0.425176 1_1:-60708365 None:intergenic
GGTGGAAATGGAAATGGAAA+TGG 0.432449 1_1:+60710115 Msa0033260:CDS
AATGGTCGTGGGCCACAGCT+AGG 0.432834 1_1:+60709581 Msa0033260:CDS
AGTGCAAGGGTTACCGGCCG+GGG 0.435816 1_1:+60710312 Msa0033260:CDS
GGCACCATGTCCTGCTCATA+AGG 0.437152 1_1:-60710845 None:intergenic
GAATAAAGGGGAAAAGCAAA+AGG 0.443691 1_1:+60709817 Msa0033260:CDS
GGTAATGGAGGTGGTAAGAA+AGG 0.449463 1_1:+60709773 Msa0033260:CDS
TATCCACAACATATGATGTA+TGG 0.452805 1_1:+60710523 Msa0033260:CDS
AGAAGTGATAAATTGATTGC+CGG 0.453817 1_1:-60708261 None:intergenic
TGCAAATGGATAATAACAAA+GGG 0.454184 1_1:+60709246 Msa0033260:CDS
TTATTGGCATTGCCCTTGGC+AGG 0.454606 1_1:-60710148 None:intergenic
AAACTGCTTCAGAAAATTGA+AGG 0.457319 1_1:+60708690 Msa0033260:CDS
ACCTATGCAAATGCAGATGA+AGG 0.459346 1_1:+60709718 Msa0033260:CDS
GTAATGGAGGTGGTAAGAAA+GGG 0.460661 1_1:+60709774 Msa0033260:CDS
ACATGTTTCTGAGATTTGTT+GGG 0.462682 1_1:-60709365 None:intergenic
GGGAAAAGCAAAAGGGTGGT+GGG 0.463087 1_1:+60709825 Msa0033260:CDS
TCTGGCCCATTGGACCCATA+TGG 0.464410 1_1:-60710201 None:intergenic
CAACAAGCCTCAGAATCAAA+AGG 0.465567 1_1:+60709277 Msa0033260:CDS
GGTAAGGGTGGAAATGGAAA+TGG 0.465972 1_1:+60710109 Msa0033260:CDS
TCACTGAAAACATGAGTGAT+TGG 0.466485 1_1:-60710616 None:intergenic
TGCTGCCCAAATCCATTGCC+TGG 0.470924 1_1:-60709518 None:intergenic
GTGGAAATGGAAATGGAAAT+GGG 0.471325 1_1:+60710116 Msa0033260:CDS
CAAGGGAAGGTGTTGGTGAC+AGG 0.475651 1_1:+60709089 Msa0033260:CDS
AGGGTATTGTTGGAATGCAT+TGG 0.476901 1_1:-60708355 None:intergenic
TCCTCATGGTAAAAGTGGTA+AGG 0.478115 1_1:+60710093 Msa0033260:CDS
TCAGTTTAAGAACATGCAAA+TGG 0.478310 1_1:+60709232 Msa0033260:CDS
AATGGTAAAGGAGGAGGTGG+TGG 0.479249 1_1:+60709656 Msa0033260:CDS
CCACAGCTAGGGCCTGGTGA+TGG 0.480756 1_1:+60709593 Msa0033260:CDS
AGGGAAACATGCTGAACTAT+GGG 0.482972 1_1:+60709154 Msa0033260:CDS
AATGGGTCAGATGGGTTCAA+TGG 0.483632 1_1:+60710267 Msa0033260:CDS
ATTGCACCCATCTGGCCCAT+TGG 0.483802 1_1:-60710211 None:intergenic
AAGGGTAAAAGTGGAAATTA+CGG 0.485308 1_1:+60709737 Msa0033260:CDS
ATCACTCCTCATGGTAAAAG+TGG 0.485671 1_1:+60710088 Msa0033260:CDS
ATTCATCGCCGCAGCTGCCC+CGG 0.485684 1_1:-60710329 None:intergenic
ATGAATAAGATGGGTCCAAT+GGG 0.487266 1_1:+60710250 Msa0033260:CDS
GCAGTGCAAGGGTTACCGGC+CGG 0.488422 1_1:+60710310 Msa0033260:CDS
GGCCATGGTCAAGGGCCTCC+AGG 0.488629 1_1:+60709500 Msa0033260:CDS
CATGGTCATGGCCATGGTCA+AGG 0.488816 1_1:+60709491 Msa0033260:CDS
GAGGAGTGATATCAAAGTCT+TGG 0.489452 1_1:-60710075 None:intergenic
CGTGGGCCACAGCTAGGGCC+TGG 0.491267 1_1:+60709587 Msa0033260:CDS
ATCGCCGCAGCTGCCCCGGC+CGG 0.491724 1_1:-60710325 None:intergenic
GATGGGTCCAATGGGTCAGA+TGG 0.493165 1_1:+60710258 Msa0033260:CDS
AGGAGCATGCCGGCAGTGCA+AGG 0.498242 1_1:+60710298 Msa0033260:CDS
AAAATATATCCGTACTACTT+AGG 0.499474 1_1:-60708305 None:intergenic
GTTACCGGCCGGGGCAGCTG+CGG 0.501977 1_1:+60710321 Msa0033260:CDS
ACCAATGCCATCACACCCTA+TGG 0.502702 1_1:+60710588 Msa0033260:CDS
GCCATGAACATCCCAGGTAA+TGG 0.503054 1_1:+60709638 Msa0033260:CDS
CCTGGGATGTTCATGGCAGC+AGG 0.506128 1_1:-60709632 None:intergenic
TGCCTGGAGGCCCTTGACCA+TGG 0.506822 1_1:-60709502 None:intergenic
GGTGATGGTATGATGATGAA+TGG 0.512661 1_1:+60709608 Msa0033260:CDS
GGTCAAGGGCCTCCAGGCAA+TGG 0.514555 1_1:+60709506 Msa0033260:CDS
CATCCATCAATGAACTATAT+GGG 0.516767 1_1:+60710559 Msa0033260:CDS
GCATAATAACAAAATGATGA+TGG 0.517505 1_1:+60709547 Msa0033260:CDS
GATGGCAGCAATGAATAAGA+TGG 0.517515 1_1:+60710240 Msa0033260:CDS
ATTGAACCCATCTGACCCAT+TGG 0.518800 1_1:-60710265 None:intergenic
TCTGTAGAATTGTCTTCTCA+AGG 0.518947 1_1:+60708629 Msa0033260:intron
TATGGGTCCAATGGGCCAGA+TGG 0.519343 1_1:+60710204 Msa0033260:CDS
ATTTGCATGTTCTTAAACTG+AGG 0.523768 1_1:-60709230 None:intergenic
ATGAATGGTGGCTATTATCA+AGG 0.526298 1_1:+60710346 Msa0033260:CDS
TGTTTATTATCTTGCAGCAC+CGG 0.528186 1_1:+60708242 Msa0033260:five_prime_UTR
ATGGTCGTGGGCCACAGCTA+GGG 0.529327 1_1:+60709582 Msa0033260:CDS
ATGGGTCCAATGGGCCAGAT+GGG 0.532006 1_1:+60710205 Msa0033260:CDS
CTGAATGTGCCTAAGTAGTA+CGG 0.535365 1_1:+60708296 Msa0033260:five_prime_UTR
ATATAGTTCATTGATGGATG+TGG 0.537347 1_1:-60710556 None:intergenic
TTGTGAAGGTTGTGAGCAGA+AGG 0.537353 1_1:+60708662 Msa0033260:CDS
CTCCTCCTTTACCATTACCT+GGG 0.537413 1_1:-60709649 None:intergenic
AACATCCCAGGTAATGGTAA+AGG 0.537780 1_1:+60709644 Msa0033260:CDS
ATAGCAACAACAACAGCAAA+GGG 0.537937 1_1:+60710005 Msa0033260:CDS
GGGTGTGATGGCATTGGTGG+CGG 0.538638 1_1:-60710583 None:intergenic
GCTATGATGCAGAATGGTCG+TGG 0.539141 1_1:+60709569 Msa0033260:CDS
CACGGACATGGTCATGGCCA+TGG 0.540291 1_1:+60709485 Msa0033260:CDS
GGTCCCATATAGTTCATTGA+TGG 0.543358 1_1:-60710562 None:intergenic
ATGCAGATGAAGGGTAAAAG+TGG 0.544101 1_1:+60709728 Msa0033260:CDS
ATAGGGTGTGATGGCATTGG+TGG 0.545253 1_1:-60710586 None:intergenic
GCCATAGGGTGTGATGGCAT+TGG 0.546440 1_1:-60710589 None:intergenic
GAGGAGTTTGGTCACGGACA+TGG 0.551855 1_1:+60709473 Msa0033260:CDS
ATAATAAACAGCTACAAACT+AGG 0.552187 1_1:-60708229 None:intergenic
TGGGTTCAATGGACCAAATG+AGG 0.553719 1_1:+60710278 Msa0033260:CDS
TAATGGAGGTGGTAAGAAAG+GGG 0.555785 1_1:+60709775 Msa0033260:CDS
ATGGTCATGGCCATGGTCAA+GGG 0.556259 1_1:+60709492 Msa0033260:CDS
CCCTTCATCTGCATTTGCAT+AGG 0.556545 1_1:-60709719 None:intergenic
AATGAATAAGATGGGTCCAA+TGG 0.557145 1_1:+60710249 Msa0033260:CDS
CCAGGTAATGGTAAAGGAGG+AGG 0.560490 1_1:+60709650 Msa0033260:CDS
TGGGAAAGGTGCTCCTGCCA+AGG 0.561931 1_1:+60710135 Msa0033260:CDS
GCAGCTGCGGCGATGAATGG+TGG 0.562369 1_1:+60710334 Msa0033260:CDS
AGGAGTGAATTAGGCACCAC+AGG 0.563041 1_1:-60710898 None:intergenic
GACTTTGATATCACTCCTCA+TGG 0.564860 1_1:+60710079 Msa0033260:CDS
CCTCCATACATCATATGTTG+TGG 0.564896 1_1:-60710526 None:intergenic
ACAACAACAACAGCAATACA+TGG 0.565187 1_1:+60710414 Msa0033260:CDS
GCACAGTTTCAAAATCCTAA+AGG 0.569465 1_1:+60709323 Msa0033260:CDS
CCTCATGGTAAAAGTGGTAA+GGG 0.569715 1_1:+60710094 Msa0033260:CDS
AAGTAATTAATTACTAGTAG+TGG 0.570079 1_1:+60710669 Msa0033260:exon
AACAAGCCTCAGAATCAAAA+GGG 0.570080 1_1:+60709278 Msa0033260:CDS
TTTGGTCACGGACATGGTCA+TGG 0.570828 1_1:+60709479 Msa0033260:CDS
GGTAATAATAATGGTAATGG+GGG 0.572168 1_1:+60710178 Msa0033260:CDS
GTAACGACAACCTTATGAGC+AGG 0.573000 1_1:+60710835 Msa0033260:three_prime_UTR
TGTGATACTCTGTCATTGAC+TGG 0.574552 1_1:-60710872 None:intergenic
ATGCAAATGGATAATAACAA+AGG 0.575532 1_1:+60709245 Msa0033260:CDS
AAGGTTAATATCCATTGTGA+AGG 0.575780 1_1:+60708648 Msa0033260:CDS
TGGTAATAATAATGGTAATG+GGG 0.579408 1_1:+60710177 Msa0033260:CDS
ATGGGTCCAATGGGTCAGAT+GGG 0.580478 1_1:+60710259 Msa0033260:CDS
GTGAATATAGATGCAGAACA+AGG 0.583193 1_1:+60709071 Msa0033260:CDS
GTGATGGTATGATGATGAAT+GGG 0.583869 1_1:+60709609 Msa0033260:CDS
GCAAATGGATAATAACAAAG+GGG 0.584331 1_1:+60709247 Msa0033260:CDS
TGAGTGATTGGATCTGCCAT+AGG 0.585575 1_1:-60710604 None:intergenic
CCTGCTGCCATGAACATCCC+AGG 0.587642 1_1:+60709632 Msa0033260:CDS
GGTAATGGTAAAGGAGGAGG+TGG 0.588777 1_1:+60709653 Msa0033260:CDS
AATAAAGGGGAAAAGCAAAA+GGG 0.595467 1_1:+60709818 Msa0033260:CDS
ATGGCAGCAATGAATAAGAT+GGG 0.598736 1_1:+60710241 Msa0033260:CDS
TATAGATGCAGAACAAGGGA+AGG 0.601009 1_1:+60709076 Msa0033260:CDS
GGATCTGCCATAGGGTGTGA+TGG 0.601407 1_1:-60710595 None:intergenic
CAACATATGATGTATGGAGG+AGG 0.605393 1_1:+60710529 Msa0033260:CDS
CCTATGCAAATGCAGATGAA+GGG 0.607502 1_1:+60709719 Msa0033260:CDS
TTCATCATCATACCATCACC+AGG 0.608129 1_1:-60709605 None:intergenic
AATAGCAACAACAACAGCAA+AGG 0.608297 1_1:+60710004 Msa0033260:CDS
AATGGAAATGGAAATGGGAA+AGG 0.608664 1_1:+60710121 Msa0033260:CDS
ATCCCAGGTAATGGTAAAGG+AGG 0.609225 1_1:+60709647 Msa0033260:CDS
ACTCTGTCATTGACTGGCAG+TGG 0.610829 1_1:-60710866 None:intergenic
GGGAAAGGTGCTCCTGCCAA+GGG 0.613724 1_1:+60710136 Msa0033260:CDS
GGACCAAATGAGGAGCATGC+CGG 0.615075 1_1:+60710288 Msa0033260:CDS
CATGGTAAAAGTGGTAAGGG+TGG 0.615769 1_1:+60710097 Msa0033260:CDS
TGCAGAACAAGGGAAGGTGT+TGG 0.615855 1_1:+60709082 Msa0033260:CDS
GGAGCATGCCGGCAGTGCAA+GGG 0.616628 1_1:+60710299 Msa0033260:CDS
GAAGAAGAGGAGTTTGGTCA+CGG 0.617819 1_1:+60709467 Msa0033260:CDS
GATGGGTGCAATGAATCAGA+TGG 0.620881 1_1:+60710222 Msa0033260:CDS
GGCAATGCCAATAATGGACA+TGG 0.622193 1_1:+60710157 Msa0033260:CDS
AATGGAGGTGGTAAGAAAGG+GGG 0.629262 1_1:+60709776 Msa0033260:CDS
CCATCACCAGGCCCTAGCTG+TGG 0.636272 1_1:-60709593 None:intergenic
AAAGGGGAAAAGCAAAAGGG+TGG 0.640635 1_1:+60709821 Msa0033260:CDS
TCATAAGGTTGTCGTTACAC+AGG 0.641578 1_1:-60710830 None:intergenic
CCACAACATATGATGTATGG+AGG 0.641920 1_1:+60710526 Msa0033260:CDS
ACAACCTTATGAGCAGGACA+TGG 0.650595 1_1:+60710841 Msa0033260:three_prime_UTR
GAGTGATTGGATCTGCCATA+GGG 0.655708 1_1:-60710603 None:intergenic
ATATGATGTATGGAGGAGGA+AGG 0.656963 1_1:+60710533 Msa0033260:CDS
AAACATGCTGAACTATGGGG+TGG 0.661564 1_1:+60709158 Msa0033260:CDS
TGAATATAGATGCAGAACAA+GGG 0.662709 1_1:+60709072 Msa0033260:CDS
TGGAGGTAAGAAGAATAAAG+GGG 0.662757 1_1:+60709805 Msa0033260:CDS
CAAATGGATAATAACAAAGG+GGG 0.663697 1_1:+60709248 Msa0033260:CDS
ATGATGGCTATGATGCAGAA+TGG 0.663851 1_1:+60709563 Msa0033260:CDS
CAGTTTCAAAATCCTAAAGG+AGG 0.665835 1_1:+60709326 Msa0033260:CDS
GAGGAATTTGATGAGAGTGA+TGG 0.668256 1_1:+60709407 Msa0033260:CDS
CAGCAACAACAAATGCAGCA+AGG 0.669858 1_1:+60710484 Msa0033260:CDS
TCTGCTCACAACCTTCACAA+TGG 0.671031 1_1:-60708659 None:intergenic
GGGAAACATGCTGAACTATG+GGG 0.688345 1_1:+60709155 Msa0033260:CDS
TGCCCAAATCCATTGCCTGG+AGG 0.700160 1_1:-60709515 None:intergenic
CTATGATGCAGAATGGTCGT+GGG 0.701836 1_1:+60709570 Msa0033260:CDS
TAAAAGTGGAAATTACGGTG+AGG 0.728158 1_1:+60709742 Msa0033260:CDS
ACAGAGTATCACATGTCCTG+TGG 0.743374 1_1:+60710882 Msa0033260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTGTCTTTTTTTTT+TGG + chr1_1:60710711-60710730 Msa0033260:three_prime_UTR 10.0%
!!! TTATTTTGTCTTTTTTTTTT+GGG + chr1_1:60710712-60710731 Msa0033260:three_prime_UTR 10.0%
!!! AGATATTTTTTTTTCTATAG+AGG - chr1_1:60708385-60708404 None:intergenic 15.0%
!!! TGAACTTTTTTATGTTTATA+TGG + chr1_1:60708934-60708953 Msa0033260:intron 15.0%
!!! TATTTTGTCTTTTTTTTTTG+GGG + chr1_1:60710713-60710732 Msa0033260:three_prime_UTR 15.0%
!! AAGAAATCATACAATTTAAT+GGG - chr1_1:60710939-60710958 None:intergenic 15.0%
!! ATAAATAAGTAAGAAGAACA+AGG - chr1_1:60708517-60708536 None:intergenic 20.0%
!! AAACAAAAACTTTACTATGT+CGG + chr1_1:60708823-60708842 Msa0033260:intron 20.0%
!! AAAAAACATGAAATTAAGGA+GGG - chr1_1:60708873-60708892 None:intergenic 20.0%
!!! ATCATTTTGTTATTATGCAT+AGG - chr1_1:60709545-60709564 None:intergenic 20.0%
!! AAAAATGGTAAAGGTAAAAA+CGG + chr1_1:60709884-60709903 Msa0033260:CDS 20.0%
!! ATGGTAATAATAATGGTAAT+GGG + chr1_1:60710176-60710195 Msa0033260:CDS 20.0%
!! AAGTAATTAATTACTAGTAG+TGG + chr1_1:60710669-60710688 Msa0033260:exon 20.0%
!! GAAGAAATCATACAATTTAA+TGG - chr1_1:60710940-60710959 None:intergenic 20.0%
! ATAATAAACAGCTACAAACT+AGG - chr1_1:60708232-60708251 None:intergenic 25.0%
! AAAATATATCCGTACTACTT+AGG - chr1_1:60708308-60708327 None:intergenic 25.0%
!!! TTTTTTCTATAGAGGCAAAA+GGG - chr1_1:60708377-60708396 None:intergenic 25.0%
!!! TTTTTTTCTATAGAGGCAAA+AGG - chr1_1:60708378-60708397 None:intergenic 25.0%
! ACAAGATATGATGAAAATTC+AGG + chr1_1:60708486-60708505 Msa0033260:CDS 25.0%
! AATCTGTACTTATGTTTAAC+TGG + chr1_1:60708586-60708605 Msa0033260:intron 25.0%
!!! ACTTATGTTTAACTGGTTTT+TGG + chr1_1:60708593-60708612 Msa0033260:intron 25.0%
! ACATGTTAACTTTACTATGT+CGG + chr1_1:60708781-60708800 Msa0033260:intron 25.0%
! GAAAAAACATGAAATTAAGG+AGG - chr1_1:60708874-60708893 None:intergenic 25.0%
! AGGGAAAAAACATGAAATTA+AGG - chr1_1:60708877-60708896 None:intergenic 25.0%
! TCACAAAAACATCATAAAGT+TGG - chr1_1:60708917-60708936 None:intergenic 25.0%
! ATGCAAATGGATAATAACAA+AGG + chr1_1:60709245-60709264 Msa0033260:CDS 25.0%
! TGCAAATGGATAATAACAAA+GGG + chr1_1:60709246-60709265 Msa0033260:CDS 25.0%
!!! TGTTAATTTTGATTTGTCTG+AGG + chr1_1:60709385-60709404 Msa0033260:CDS 25.0%
! GCATAATAACAAAATGATGA+TGG + chr1_1:60709547-60709566 Msa0033260:CDS 25.0%
! AATTATGCAAAAGCCAAAAA+AGG + chr1_1:60709680-60709699 Msa0033260:CDS 25.0%
!!! ATCCATAATATCTCCTTTTT+TGG - chr1_1:60709696-60709715 None:intergenic 25.0%
! AATAGTAGCAAGAAGAAAAA+TGG + chr1_1:60709869-60709888 Msa0033260:CDS 25.0%
!!! GTTTTCTAGTTAAGTTTCTA+GGG + chr1_1:60709915-60709934 Msa0033260:CDS 25.0%
! ATTATTACCATGTCCATTAT+TGG - chr1_1:60710167-60710186 None:intergenic 25.0%
! AATGGACATGGTAATAATAA+TGG + chr1_1:60710169-60710188 Msa0033260:CDS 25.0%
! CATGGTAATAATAATGGTAA+TGG + chr1_1:60710175-60710194 Msa0033260:CDS 25.0%
!! TGGTAATAATAATGGTAATG+GGG + chr1_1:60710177-60710196 Msa0033260:CDS 25.0%
!! TCCATTAAATTTTGTTGCAA+TGG + chr1_1:60710736-60710755 Msa0033260:three_prime_UTR 25.0%
! ACCATTGCAACAAAATTTAA+TGG - chr1_1:60710740-60710759 None:intergenic 25.0%
!! TTAAATTTTGTTGCAATGGT+AGG + chr1_1:60710740-60710759 Msa0033260:three_prime_UTR 25.0%
AGAAGTGATAAATTGATTGC+CGG - chr1_1:60708264-60708283 None:intergenic 30.0%
AGAAGAGAAGAAATAGTTGT+TGG - chr1_1:60708421-60708440 None:intergenic 30.0%
GTACAGATTCAACTTTAACT+AGG - chr1_1:60708575-60708594 None:intergenic 30.0%
AAGGTTAATATCCATTGTGA+AGG + chr1_1:60708648-60708667 Msa0033260:CDS 30.0%
AAACTGCTTCAGAAAATTGA+AGG + chr1_1:60708690-60708709 Msa0033260:CDS 30.0%
AAGAAAAGAAGAAAGAGACA+TGG - chr1_1:60708726-60708745 None:intergenic 30.0%
CATCATAAAGTTGGAAACTT+TGG - chr1_1:60708908-60708927 None:intergenic 30.0%
TGAATATAGATGCAGAACAA+GGG + chr1_1:60709072-60709091 Msa0033260:CDS 30.0%
TCAAAAAGCTGAAAAGTTCA+GGG + chr1_1:60709135-60709154 Msa0033260:CDS 30.0%
ATTTGCATGTTCTTAAACTG+AGG - chr1_1:60709233-60709252 None:intergenic 30.0%
TCAGTTTAAGAACATGCAAA+TGG + chr1_1:60709232-60709251 Msa0033260:CDS 30.0%
GCAAATGGATAATAACAAAG+GGG + chr1_1:60709247-60709266 Msa0033260:CDS 30.0%
CAAATGGATAATAACAAAGG+GGG + chr1_1:60709248-60709267 Msa0033260:CDS 30.0%
! TTCATATCTTTTCCTCCTTT+AGG - chr1_1:60709341-60709360 None:intergenic 30.0%
!! ACATGTTTCTGAGATTTGTT+GGG - chr1_1:60709368-60709387 None:intergenic 30.0%
!! AACATGTTTCTGAGATTTGT+TGG - chr1_1:60709369-60709388 None:intergenic 30.0%
!!! TAATTTTGATTTGTCTGAGG+AGG + chr1_1:60709388-60709407 Msa0033260:CDS 30.0%
AGCCAAAAAAGGAGATATTA+TGG + chr1_1:60709691-60709710 Msa0033260:CDS 30.0%
AAGGGTAAAAGTGGAAATTA+CGG + chr1_1:60709737-60709756 Msa0033260:CDS 30.0%
AATTACGGTGAGGTAAAAAA+TGG + chr1_1:60709752-60709771 Msa0033260:CDS 30.0%
ATGGAGGTAAGAAGAATAAA+GGG + chr1_1:60709804-60709823 Msa0033260:CDS 30.0%
AATAAAGGGGAAAAGCAAAA+GGG + chr1_1:60709818-60709837 Msa0033260:CDS 30.0%
AGCAAGAAGAAAAATGGTAA+AGG + chr1_1:60709875-60709894 Msa0033260:CDS 30.0%
!!! GGTTTTCTAGTTAAGTTTCT+AGG + chr1_1:60709914-60709933 Msa0033260:CDS 30.0%
CTTGGAAAAAAGAGCAAAAA+GGG + chr1_1:60709938-60709957 Msa0033260:CDS 30.0%
!!! TCCATTGTTTTTGTTCTTGT+CGG - chr1_1:60709975-60709994 None:intergenic 30.0%
AAAGGGAAAAAAGGTAAGAA+AGG + chr1_1:60710022-60710041 Msa0033260:CDS 30.0%
AGGTAAGAAAGGTGAAAAAT+TGG + chr1_1:60710033-60710052 Msa0033260:CDS 30.0%
!! GGTAATAATAATGGTAATGG+GGG + chr1_1:60710178-60710197 Msa0033260:CDS 30.0%
TATCCACAACATATGATGTA+TGG + chr1_1:60710523-60710542 Msa0033260:CDS 30.0%
! ATATAGTTCATTGATGGATG+TGG - chr1_1:60710559-60710578 None:intergenic 30.0%
ACATCCATCAATGAACTATA+TGG + chr1_1:60710558-60710577 Msa0033260:CDS 30.0%
CATCCATCAATGAACTATAT+GGG + chr1_1:60710559-60710578 Msa0033260:CDS 30.0%
AGGAAAATGTGCAAGATTTA+AGG + chr1_1:60710760-60710779 Msa0033260:three_prime_UTR 30.0%
!!! TAAGTTTTGAGGAGTGAATT+AGG - chr1_1:60710910-60710929 None:intergenic 30.0%
!! ATGGGTTAAGATAAGTTTTG+AGG - chr1_1:60710921-60710940 None:intergenic 30.0%
TGTTTATTATCTTGCAGCAC+CGG + chr1_1:60708242-60708261 Msa0033260:five_prime_UTR 35.0%
TCTGTAGAATTGTCTTCTCA+AGG + chr1_1:60708629-60708648 Msa0033260:intron 35.0%
TAAGGAGGGTTTAGAAACAT+GGG - chr1_1:60708859-60708878 None:intergenic 35.0%
TTAAGGAGGGTTTAGAAACA+TGG - chr1_1:60708860-60708879 None:intergenic 35.0%
GGAAACTTTGGATGAATGAA+GGG - chr1_1:60708896-60708915 None:intergenic 35.0%
TGGAAACTTTGGATGAATGA+AGG - chr1_1:60708897-60708916 None:intergenic 35.0%
GTGAATATAGATGCAGAACA+AGG + chr1_1:60709071-60709090 Msa0033260:CDS 35.0%
! CTGAACTTTTCAGCTTTTTG+AGG - chr1_1:60709136-60709155 None:intergenic 35.0%
CTCAAAAAGCTGAAAAGTTC+AGG + chr1_1:60709134-60709153 Msa0033260:CDS 35.0%
AACAAGCCTCAGAATCAAAA+GGG + chr1_1:60709278-60709297 Msa0033260:CDS 35.0%
!! TTTTGACCCTTTTGATTCTG+AGG - chr1_1:60709287-60709306 None:intergenic 35.0%
CAGAATCAAAAGGGTCAAAA+AGG + chr1_1:60709287-60709306 Msa0033260:CDS 35.0%
AATCAAAAGGGTCAAAAAGG+TGG + chr1_1:60709290-60709309 Msa0033260:CDS 35.0%
GCACAGTTTCAAAATCCTAA+AGG + chr1_1:60709323-60709342 Msa0033260:CDS 35.0%
CAGTTTCAAAATCCTAAAGG+AGG + chr1_1:60709326-60709345 Msa0033260:CDS 35.0%
!! CTATGACGATGATTTTGATG+AGG + chr1_1:60709442-60709461 Msa0033260:CDS 35.0%
! TTTTGATGAGGATGAAGAAG+AGG + chr1_1:60709454-60709473 Msa0033260:CDS 35.0%
! GTGATGGTATGATGATGAAT+GGG + chr1_1:60709609-60709628 Msa0033260:CDS 35.0%
TAAAAGTGGAAATTACGGTG+AGG + chr1_1:60709742-60709761 Msa0033260:CDS 35.0%
GGTGAGGTAAAAAATGGTAA+TGG + chr1_1:60709758-60709777 Msa0033260:CDS 35.0%
!! GAGGTAAAAAATGGTAATGG+AGG + chr1_1:60709761-60709780 Msa0033260:CDS 35.0%
!! GTAAAAAATGGTAATGGAGG+TGG + chr1_1:60709764-60709783 Msa0033260:CDS 35.0%
GATGGAGGTAAGAAGAATAA+AGG + chr1_1:60709803-60709822 Msa0033260:CDS 35.0%
TGGAGGTAAGAAGAATAAAG+GGG + chr1_1:60709805-60709824 Msa0033260:CDS 35.0%
GAATAAAGGGGAAAAGCAAA+AGG + chr1_1:60709817-60709836 Msa0033260:CDS 35.0%
AATGGTAAAGGTAAAAACGG+TGG + chr1_1:60709887-60709906 Msa0033260:CDS 35.0%
GCTTGGAAAAAAGAGCAAAA+AGG + chr1_1:60709937-60709956 Msa0033260:CDS 35.0%
GACAAGAACAAAAACAATGG+AGG + chr1_1:60709974-60709993 Msa0033260:CDS 35.0%
AAGAACAAAAACAATGGAGG+AGG + chr1_1:60709977-60709996 Msa0033260:CDS 35.0%
AATAGCAACAACAACAGCAA+AGG + chr1_1:60710004-60710023 Msa0033260:CDS 35.0%
ATAGCAACAACAACAGCAAA+GGG + chr1_1:60710005-60710024 Msa0033260:CDS 35.0%
AACAACAGCAAAGGGAAAAA+AGG + chr1_1:60710013-60710032 Msa0033260:CDS 35.0%
GTGGAAATGGAAATGGAAAT+GGG + chr1_1:60710116-60710135 Msa0033260:CDS 35.0%
AATGGAAATGGAAATGGGAA+AGG + chr1_1:60710121-60710140 Msa0033260:CDS 35.0%
ATGGCAGCAATGAATAAGAT+GGG + chr1_1:60710241-60710260 Msa0033260:CDS 35.0%
AATGAATAAGATGGGTCCAA+TGG + chr1_1:60710249-60710268 Msa0033260:CDS 35.0%
ATGAATAAGATGGGTCCAAT+GGG + chr1_1:60710250-60710269 Msa0033260:CDS 35.0%
ATGAATGGTGGCTATTATCA+AGG + chr1_1:60710346-60710365 Msa0033260:CDS 35.0%
ACAACAACAACAGCAATACA+TGG + chr1_1:60710414-60710433 Msa0033260:CDS 35.0%
TCACTGAAAACATGAGTGAT+TGG - chr1_1:60710619-60710638 None:intergenic 35.0%
CTGAATGTGCCTAAGTAGTA+CGG + chr1_1:60708296-60708315 Msa0033260:five_prime_UTR 40.0%
!! AGGGTATTGTTGGAATGCAT+TGG - chr1_1:60708358-60708377 None:intergenic 40.0%
!! TAGAGGCAAAAGGGTATTGT+TGG - chr1_1:60708368-60708387 None:intergenic 40.0%
! TGTTGTTGTTGTTGTGATGC+AGG + chr1_1:60709038-60709057 Msa0033260:intron 40.0%
! GTTGTTGTTGTTGTGATGCA+GGG + chr1_1:60709039-60709058 Msa0033260:intron 40.0%
! TTGTTGTTGTTGTGATGCAG+GGG + chr1_1:60709040-60709059 Msa0033260:intron 40.0%
TATAGATGCAGAACAAGGGA+AGG + chr1_1:60709076-60709095 Msa0033260:CDS 40.0%
AGGGAAACATGCTGAACTAT+GGG + chr1_1:60709154-60709173 Msa0033260:CDS 40.0%
CAACAAGCCTCAGAATCAAA+AGG + chr1_1:60709277-60709296 Msa0033260:CDS 40.0%
GAGGAATTTGATGAGAGTGA+TGG + chr1_1:60709407-60709426 Msa0033260:CDS 40.0%
ATGATGGCTATGATGCAGAA+TGG + chr1_1:60709563-60709582 Msa0033260:CDS 40.0%
TTCATCATCATACCATCACC+AGG - chr1_1:60709608-60709627 None:intergenic 40.0%
! GGTGATGGTATGATGATGAA+TGG + chr1_1:60709608-60709627 Msa0033260:CDS 40.0%
! AACATCCCAGGTAATGGTAA+AGG + chr1_1:60709644-60709663 Msa0033260:CDS 40.0%
ACCTATGCAAATGCAGATGA+AGG + chr1_1:60709718-60709737 Msa0033260:CDS 40.0%
CCTATGCAAATGCAGATGAA+GGG + chr1_1:60709719-60709738 Msa0033260:CDS 40.0%
ATGCAGATGAAGGGTAAAAG+TGG + chr1_1:60709728-60709747 Msa0033260:CDS 40.0%
! GTAATGGAGGTGGTAAGAAA+GGG + chr1_1:60709774-60709793 Msa0033260:CDS 40.0%
TAATGGAGGTGGTAAGAAAG+GGG + chr1_1:60709775-60709794 Msa0033260:CDS 40.0%
!! CTAGTTAAGTTTCTAGGGCT+TGG + chr1_1:60709920-60709939 Msa0033260:CDS 40.0%
GGAAAAAAGAGCAAAAAGGG+AGG + chr1_1:60709941-60709960 Msa0033260:CDS 40.0%
AAAAAGAGCAAAAAGGGAGG+AGG + chr1_1:60709944-60709963 Msa0033260:CDS 40.0%
GCCGACAAGAACAAAAACAA+TGG + chr1_1:60709971-60709990 Msa0033260:CDS 40.0%
AACAAAAACAATGGAGGAGG+TGG + chr1_1:60709980-60709999 Msa0033260:CDS 40.0%
GAGGAGTGATATCAAAGTCT+TGG - chr1_1:60710078-60710097 None:intergenic 40.0%
GACTTTGATATCACTCCTCA+TGG + chr1_1:60710079-60710098 Msa0033260:CDS 40.0%
ATCACTCCTCATGGTAAAAG+TGG + chr1_1:60710088-60710107 Msa0033260:CDS 40.0%
TCCTCATGGTAAAAGTGGTA+AGG + chr1_1:60710093-60710112 Msa0033260:CDS 40.0%
CCTCATGGTAAAAGTGGTAA+GGG + chr1_1:60710094-60710113 Msa0033260:CDS 40.0%
AAAAGTGGTAAGGGTGGAAA+TGG + chr1_1:60710103-60710122 Msa0033260:CDS 40.0%
GGTGGAAATGGAAATGGAAA+TGG + chr1_1:60710115-60710134 Msa0033260:CDS 40.0%
GATGGCAGCAATGAATAAGA+TGG + chr1_1:60710240-60710259 Msa0033260:CDS 40.0%
TGCTGTTGCTGATAAGGATT+TGG - chr1_1:60710388-60710407 None:intergenic 40.0%
CCTCCATACATCATATGTTG+TGG - chr1_1:60710529-60710548 None:intergenic 40.0%
CCACAACATATGATGTATGG+AGG + chr1_1:60710526-60710545 Msa0033260:CDS 40.0%
CAACATATGATGTATGGAGG+AGG + chr1_1:60710529-60710548 Msa0033260:CDS 40.0%
ATATGATGTATGGAGGAGGA+AGG + chr1_1:60710533-60710552 Msa0033260:CDS 40.0%
GGTCCCATATAGTTCATTGA+TGG - chr1_1:60710565-60710584 None:intergenic 40.0%
!! AGTAGTGGCTAGTTTGTTTC+AGG + chr1_1:60710684-60710703 Msa0033260:three_prime_UTR 40.0%
TCATAAGGTTGTCGTTACAC+AGG - chr1_1:60710833-60710852 None:intergenic 40.0%
TGTGATACTCTGTCATTGAC+TGG - chr1_1:60710875-60710894 None:intergenic 40.0%
TCTGCTCACAACCTTCACAA+TGG - chr1_1:60708662-60708681 None:intergenic 45.0%
TTGTGAAGGTTGTGAGCAGA+AGG + chr1_1:60708662-60708681 Msa0033260:CDS 45.0%
!! AGCTTTTTGAGGAGCTTTGC+TGG - chr1_1:60709125-60709144 None:intergenic 45.0%
CAGGGAAACATGCTGAACTA+TGG + chr1_1:60709153-60709172 Msa0033260:CDS 45.0%
GGGAAACATGCTGAACTATG+GGG + chr1_1:60709155-60709174 Msa0033260:CDS 45.0%
AAACATGCTGAACTATGGGG+TGG + chr1_1:60709158-60709177 Msa0033260:CDS 45.0%
GAGGATGAAGAAGAGGAGTT+TGG + chr1_1:60709461-60709480 Msa0033260:CDS 45.0%
GAAGAAGAGGAGTTTGGTCA+CGG + chr1_1:60709467-60709486 Msa0033260:CDS 45.0%
CTATGATGCAGAATGGTCGT+GGG + chr1_1:60709570-60709589 Msa0033260:CDS 45.0%
ACCATTACCTGGGATGTTCA+TGG - chr1_1:60709642-60709661 None:intergenic 45.0%
! ATCCCAGGTAATGGTAAAGG+AGG + chr1_1:60709647-60709666 Msa0033260:CDS 45.0%
CTCCTCCTTTACCATTACCT+GGG - chr1_1:60709652-60709671 None:intergenic 45.0%
CCCTTCATCTGCATTTGCAT+AGG - chr1_1:60709722-60709741 None:intergenic 45.0%
!! GGTAATGGAGGTGGTAAGAA+AGG + chr1_1:60709773-60709792 Msa0033260:CDS 45.0%
AATGGAGGTGGTAAGAAAGG+GGG + chr1_1:60709776-60709795 Msa0033260:CDS 45.0%
AAAGGGGAAAAGCAAAAGGG+TGG + chr1_1:60709821-60709840 Msa0033260:CDS 45.0%
GGTAAAGGTAAAAACGGTGG+TGG + chr1_1:60709890-60709909 Msa0033260:CDS 45.0%
! AAAGGTAAAAACGGTGGTGG+TGG + chr1_1:60709893-60709912 Msa0033260:CDS 45.0%
!! CCCTTACCACTTTTACCATG+AGG - chr1_1:60710097-60710116 None:intergenic 45.0%
CATGGTAAAAGTGGTAAGGG+TGG + chr1_1:60710097-60710116 Msa0033260:CDS 45.0%
GGTAAGGGTGGAAATGGAAA+TGG + chr1_1:60710109-60710128 Msa0033260:CDS 45.0%
TCCATTATTGGCATTGCCCT+TGG - chr1_1:60710155-60710174 None:intergenic 45.0%
!! GGCAATGCCAATAATGGACA+TGG + chr1_1:60710157-60710176 Msa0033260:CDS 45.0%
!! TAATGGTAATGGGGGCCATA+TGG + chr1_1:60710186-60710205 Msa0033260:CDS 45.0%
!! AATGGTAATGGGGGCCATAT+GGG + chr1_1:60710187-60710206 Msa0033260:CDS 45.0%
TCTGATTCATTGCACCCATC+TGG - chr1_1:60710222-60710241 None:intergenic 45.0%
GATGGGTGCAATGAATCAGA+TGG + chr1_1:60710222-60710241 Msa0033260:CDS 45.0%
ATTGAACCCATCTGACCCAT+TGG - chr1_1:60710268-60710287 None:intergenic 45.0%
! AATGGGTCAGATGGGTTCAA+TGG + chr1_1:60710267-60710286 Msa0033260:CDS 45.0%
TGGGTTCAATGGACCAAATG+AGG + chr1_1:60710278-60710297 Msa0033260:CDS 45.0%
! TGCTGTTGCTGTTGCTGATA+AGG - chr1_1:60710394-60710413 None:intergenic 45.0%
CAGCAACAACAAATGCAGCA+AGG + chr1_1:60710484-60710503 Msa0033260:CDS 45.0%
GAGTGATTGGATCTGCCATA+GGG - chr1_1:60710606-60710625 None:intergenic 45.0%
TGAGTGATTGGATCTGCCAT+AGG - chr1_1:60710607-60710626 None:intergenic 45.0%
GTAACGACAACCTTATGAGC+AGG + chr1_1:60710835-60710854 Msa0033260:three_prime_UTR 45.0%
ACAACCTTATGAGCAGGACA+TGG + chr1_1:60710841-60710860 Msa0033260:three_prime_UTR 45.0%
! ACAGAGTATCACATGTCCTG+TGG + chr1_1:60710882-60710901 Msa0033260:three_prime_UTR 45.0%
! TGCAGAACAAGGGAAGGTGT+TGG + chr1_1:60709082-60709101 Msa0033260:CDS 50.0%
TTTGGTCACGGACATGGTCA+TGG + chr1_1:60709479-60709498 Msa0033260:CDS 50.0%
ATGGTCATGGCCATGGTCAA+GGG + chr1_1:60709492-60709511 Msa0033260:CDS 50.0%
GCTATGATGCAGAATGGTCG+TGG + chr1_1:60709569-60709588 Msa0033260:CDS 50.0%
GCCATGAACATCCCAGGTAA+TGG + chr1_1:60709638-60709657 Msa0033260:CDS 50.0%
CCTCCTCCTTTACCATTACC+TGG - chr1_1:60709653-60709672 None:intergenic 50.0%
! CCAGGTAATGGTAAAGGAGG+AGG + chr1_1:60709650-60709669 Msa0033260:CDS 50.0%
! GGTAATGGTAAAGGAGGAGG+TGG + chr1_1:60709653-60709672 Msa0033260:CDS 50.0%
AATGGTAAAGGAGGAGGTGG+TGG + chr1_1:60709656-60709675 Msa0033260:CDS 50.0%
GGTAAGAAAGGGGGTGATGA+TGG + chr1_1:60709785-60709804 Msa0033260:CDS 50.0%
!! AAGAAAGGGGGTGATGATGG+AGG + chr1_1:60709788-60709807 Msa0033260:CDS 50.0%
GGGAAAAGCAAAAGGGTGGT+GGG + chr1_1:60709825-60709844 Msa0033260:CDS 50.0%
GGAAAAGCAAAAGGGTGGTG+GGG + chr1_1:60709826-60709845 Msa0033260:CDS 50.0%
! GAAAAGCAAAAGGGTGGTGG+GGG + chr1_1:60709827-60709846 Msa0033260:CDS 50.0%
TTATTGGCATTGCCCTTGGC+AGG - chr1_1:60710151-60710170 None:intergenic 50.0%
GCCAAGGGCAATGCCAATAA+TGG + chr1_1:60710151-60710170 Msa0033260:CDS 50.0%
ATGGGTCCAATGGGTCAGAT+GGG + chr1_1:60710259-60710278 Msa0033260:CDS 50.0%
! ATAGGGTGTGATGGCATTGG+TGG - chr1_1:60710589-60710608 None:intergenic 50.0%
ACCAATGCCATCACACCCTA+TGG + chr1_1:60710588-60710607 Msa0033260:CDS 50.0%
! ACTCTGTCATTGACTGGCAG+TGG - chr1_1:60710869-60710888 None:intergenic 50.0%
AGGAGTGAATTAGGCACCAC+AGG - chr1_1:60710901-60710920 None:intergenic 50.0%
!! CAAGGGAAGGTGTTGGTGAC+AGG + chr1_1:60709089-60709108 Msa0033260:CDS 55.0%
GAGGAGTTTGGTCACGGACA+TGG + chr1_1:60709473-60709492 Msa0033260:CDS 55.0%
CATGGTCATGGCCATGGTCA+AGG + chr1_1:60709491-60709510 Msa0033260:CDS 55.0%
! GGCCTCCAGGCAATGGATTT+GGG + chr1_1:60709513-60709532 Msa0033260:CDS 55.0%
TGCCCAAATCCATTGCCTGG+AGG - chr1_1:60709518-60709537 None:intergenic 55.0%
TGCTGCCCAAATCCATTGCC+TGG - chr1_1:60709521-60709540 None:intergenic 55.0%
GGGGAAAAGCAAAAGGGTGG+TGG + chr1_1:60709824-60709843 Msa0033260:CDS 55.0%
!! AAAAGGGTGGTGGGGGAGAT+TGG + chr1_1:60709834-60709853 Msa0033260:CDS 55.0%
!! AAAGGGTGGTGGGGGAGATT+GGG + chr1_1:60709835-60709854 Msa0033260:CDS 55.0%
TCTGGCCCATTGGACCCATA+TGG - chr1_1:60710204-60710223 None:intergenic 55.0%
TATGGGTCCAATGGGCCAGA+TGG + chr1_1:60710204-60710223 Msa0033260:CDS 55.0%
ATGGGTCCAATGGGCCAGAT+GGG + chr1_1:60710205-60710224 Msa0033260:CDS 55.0%
ATTGCACCCATCTGGCCCAT+TGG - chr1_1:60710214-60710233 None:intergenic 55.0%
GATGGGTCCAATGGGTCAGA+TGG + chr1_1:60710258-60710277 Msa0033260:CDS 55.0%
! GGACCAAATGAGGAGCATGC+CGG + chr1_1:60710288-60710307 Msa0033260:CDS 55.0%
GCCATAGGGTGTGATGGCAT+TGG - chr1_1:60710592-60710611 None:intergenic 55.0%
GGATCTGCCATAGGGTGTGA+TGG - chr1_1:60710598-60710617 None:intergenic 55.0%
GGCACCATGTCCTGCTCATA+AGG - chr1_1:60710848-60710867 None:intergenic 55.0%
CACGGACATGGTCATGGCCA+TGG + chr1_1:60709485-60709504 Msa0033260:CDS 60.0%
! GGGCCTCCAGGCAATGGATT+TGG + chr1_1:60709512-60709531 Msa0033260:CDS 60.0%
AATGGTCGTGGGCCACAGCT+AGG + chr1_1:60709581-60709600 Msa0033260:CDS 60.0%
ATGGTCGTGGGCCACAGCTA+GGG + chr1_1:60709582-60709601 Msa0033260:CDS 60.0%
CCTGGGATGTTCATGGCAGC+AGG - chr1_1:60709635-60709654 None:intergenic 60.0%
CCTGCTGCCATGAACATCCC+AGG + chr1_1:60709632-60709651 Msa0033260:CDS 60.0%
!! AAGGGTGGTGGGGGAGATTG+GGG + chr1_1:60709836-60709855 Msa0033260:CDS 60.0%
!! TGGGAAAGGTGCTCCTGCCA+AGG + chr1_1:60710135-60710154 Msa0033260:CDS 60.0%
!! GGGAAAGGTGCTCCTGCCAA+GGG + chr1_1:60710136-60710155 Msa0033260:CDS 60.0%
TGGGGGCCATATGGGTCCAA+TGG + chr1_1:60710195-60710214 Msa0033260:CDS 60.0%
GGGGGCCATATGGGTCCAAT+GGG + chr1_1:60710196-60710215 Msa0033260:CDS 60.0%
CTGCCGGCATGCTCCTCATT+TGG - chr1_1:60710294-60710313 None:intergenic 60.0%
!! GGGTGTGATGGCATTGGTGG+CGG - chr1_1:60710586-60710605 None:intergenic 60.0%
TGCCTGGAGGCCCTTGACCA+TGG - chr1_1:60709505-60709524 None:intergenic 65.0%
GGTCAAGGGCCTCCAGGCAA+TGG + chr1_1:60709506-60709525 Msa0033260:CDS 65.0%
CCATCACCAGGCCCTAGCTG+TGG - chr1_1:60709596-60709615 None:intergenic 65.0%
CCACAGCTAGGGCCTGGTGA+TGG + chr1_1:60709593-60709612 Msa0033260:CDS 65.0%
! AGGAGCATGCCGGCAGTGCA+AGG + chr1_1:60710298-60710317 Msa0033260:CDS 65.0%
GGAGCATGCCGGCAGTGCAA+GGG + chr1_1:60710299-60710318 Msa0033260:CDS 65.0%
GCCGGCAGTGCAAGGGTTAC+CGG + chr1_1:60710306-60710325 Msa0033260:CDS 65.0%
GCCGGTAACCCTTGCACTGC+CGG - chr1_1:60710310-60710329 None:intergenic 65.0%
GCAGTGCAAGGGTTACCGGC+CGG + chr1_1:60710310-60710329 Msa0033260:CDS 65.0%
CAGTGCAAGGGTTACCGGCC+GGG + chr1_1:60710311-60710330 Msa0033260:CDS 65.0%
AGTGCAAGGGTTACCGGCCG+GGG + chr1_1:60710312-60710331 Msa0033260:CDS 65.0%
ATTCATCGCCGCAGCTGCCC+CGG - chr1_1:60710332-60710351 None:intergenic 65.0%
GCAGCTGCGGCGATGAATGG+TGG + chr1_1:60710334-60710353 Msa0033260:CDS 65.0%
GGCCATGGTCAAGGGCCTCC+AGG + chr1_1:60709500-60709519 Msa0033260:CDS 70.0%
GGGGCAGCTGCGGCGATGAA+TGG + chr1_1:60710331-60710350 Msa0033260:CDS 70.0%
CGTGGGCCACAGCTAGGGCC+TGG + chr1_1:60709587-60709606 Msa0033260:CDS 75.0%
GTTACCGGCCGGGGCAGCTG+CGG + chr1_1:60710321-60710340 Msa0033260:CDS 75.0%
! ATCGCCGCAGCTGCCCCGGC+CGG - chr1_1:60710328-60710347 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60708216 60710983 60708216 ID=Msa0033260;Name=Msa0033260
chr1_1 mRNA 60708216 60710983 60708216 ID=Msa0033260-mRNA-1;Parent=Msa0033260;Name=Msa0033260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=262|1|1|1|1|1|3|314|571
chr1_1 exon 60708216 60708507 60708216 ID=Msa0033260-mRNA-1:exon:19018;Parent=Msa0033260-mRNA-1
chr1_1 exon 60708636 60708711 60708636 ID=Msa0033260-mRNA-1:exon:19019;Parent=Msa0033260-mRNA-1
chr1_1 exon 60709060 60710983 60709060 ID=Msa0033260-mRNA-1:exon:19020;Parent=Msa0033260-mRNA-1
chr1_1 five_prime_UTR 60708216 60708477 60708216 ID=Msa0033260-mRNA-1:five_prime_utr;Parent=Msa0033260-mRNA-1
chr1_1 CDS 60708478 60708507 60708478 ID=Msa0033260-mRNA-1:cds;Parent=Msa0033260-mRNA-1
chr1_1 CDS 60708636 60708711 60708636 ID=Msa0033260-mRNA-1:cds;Parent=Msa0033260-mRNA-1
chr1_1 CDS 60709060 60710669 60709060 ID=Msa0033260-mRNA-1:cds;Parent=Msa0033260-mRNA-1
chr1_1 three_prime_UTR 60710670 60710983 60710670 ID=Msa0033260-mRNA-1:three_prime_utr;Parent=Msa0033260-mRNA-1
Gene Sequence

>Msa0033260

ATGAGTAAACAAGATATGATGAAAATTCAGAATTGTCTTCTCAAGGTTAATATCCATTGTGAAGGTTGTGAGCAGAAGGTTAAGAAACTGCTTCAGAAAATTGAAGGGGTGTATTCTGTGAATATAGATGCAGAACAAGGGAAGGTGTTGGTGACAGGTGATGTAGATCCAGCAAAGCTCCTCAAAAAGCTGAAAAGTTCAGGGAAACATGCTGAACTATGGGGTGGACAGAAAGCTATGATGATTAATCAAAATCAAAACTTTCAACAACAACAACCTCAGTTTAAGAACATGCAAATGGATAATAACAAAGGGGGTAAGAACAACAAGCCTCAGAATCAAAAGGGTCAAAAAGGTGGTGTTCAAGTAGCACAGTTTCAAAATCCTAAAGGAGGAAAAGATATGAAAGTGCCCAACAAATCTCAGAAACATGTTAATTTTGATTTGTCTGAGGAGGAATTTGATGAGAGTGATGGCGATTTTGATGACTATGACGATGATTTTGATGAGGATGAAGAAGAGGAGTTTGGTCACGGACATGGTCATGGCCATGGTCAAGGGCCTCCAGGCAATGGATTTGGGCAGCATCCTATGCATAATAACAAAATGATGATGGCTATGATGCAGAATGGTCGTGGGCCACAGCTAGGGCCTGGTGATGGTATGATGATGAATGGGCCTGCTGCCATGAACATCCCAGGTAATGGTAAAGGAGGAGGTGGTGGTAATTATGCAAAAGCCAAAAAAGGAGATATTATGGATCTACCTATGCAAATGCAGATGAAGGGTAAAAGTGGAAATTACGGTGAGGTAAAAAATGGTAATGGAGGTGGTAAGAAAGGGGGTGATGATGGAGGTAAGAAGAATAAAGGGGAAAAGCAAAAGGGTGGTGGGGGAGATTGGGGAGATGAAAAAAATAGTAGCAAGAAGAAAAATGGTAAAGGTAAAAACGGTGGTGGTGGTTTTCTAGTTAAGTTTCTAGGGCTTGGAAAAAAGAGCAAAAAGGGAGGAGGTGCAGCCGACAAGAACAAAAACAATGGAGGAGGTGGAAATAGCAACAACAACAGCAAAGGGAAAAAAGGTAAGAAAGGTGAAAAATTGGATAAAGTTGAATTTGATTTCCAAGACTTTGATATCACTCCTCATGGTAAAAGTGGTAAGGGTGGAAATGGAAATGGAAATGGGAAAGGTGCTCCTGCCAAGGGCAATGCCAATAATGGACATGGTAATAATAATGGTAATGGGGGCCATATGGGTCCAATGGGCCAGATGGGTGCAATGAATCAGATGGCAGCAATGAATAAGATGGGTCCAATGGGTCAGATGGGTTCAATGGACCAAATGAGGAGCATGCCGGCAGTGCAAGGGTTACCGGCCGGGGCAGCTGCGGCGATGAATGGTGGCTATTATCAAGGAATGCAGCAGATGCAACCAAATCCTTATCAGCAACAGCAACAGCAACAACAACAACAGCAATACATGGCTATGATGATGCAGCAGCAACAGCAGCAACAAATGCAGCAGCAACTGCAGCAACAACAAATGCAGCAAGGAAATATGAACAGCATGTATCCACAACATATGATGTATGGAGGAGGAAGGCCACATCCATCAATGAACTATATGGGACCGCCACCAATGCCATCACACCCTATGGCAGATCCAATCACTCATGTTTTCAGTGATGAGAACACTGAGAGCTGTAGCATCATGTAA
Protein sequence

>Msa0033260

MSKQDMMKIQNCLLKVNIHCEGCEQKVKKLLQKIEGVYSVNIDAEQGKVLVTGDVDPAKLLKKLKSSGKHAELWGGQKAMMINQNQNFQQQQPQFKNMQMDNNKGGKNNKPQNQKGQKGGVQVAQFQNPKGGKDMKVPNKSQKHVNFDLSEEEFDESDGDFDDYDDDFDEDEEEEFGHGHGHGHGQGPPGNGFGQHPMHNNKMMMAMMQNGRGPQLGPGDGMMMNGPAAMNIPGNGKGGGGGNYAKAKKGDIMDLPMQMQMKGKSGNYGEVKNGNGGGKKGGDDGGKKNKGEKQKGGGGDWGDEKNSSKKKNGKGKNGGGGFLVKFLGLGKKSKKGGGAADKNKNNGGGGNSNNNSKGKKGKKGEKLDKVEFDFQDFDITPHGKSGKGGNGNGNGKGAPAKGNANNGHGNNNGNGGHMGPMGQMGAMNQMAAMNKMGPMGQMGSMDQMRSMPAVQGLPAGAAAAMNGGYYQGMQQMQPNPYQQQQQQQQQQQYMAMMMQQQQQQQMQQQLQQQQMQQGNMNSMYPQHMMYGGGRPHPSMNYMGPPPMPSHPMADPITHVFSDENTESCSIM*