AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802410 MtrunA17_Chr5g0409981 96.756 524 16 1 1 524 1 523 0.0 1040
Msa0802410 MtrunA17_Chr2g0330401 45.316 459 229 6 32 487 35 474 1.54e-128 384
Msa0802410 MtrunA17_Chr6g0449911 43.609 399 210 8 88 483 152 538 1.51e-103 326
Msa0802410 MtrunA17_Chr2g0293631 43.073 397 215 7 95 488 486 874 2.96e-97 319
Msa0802410 MtrunA17_Chr7g0270131 42.857 406 221 7 95 496 222 620 4.71e-94 303
Msa0802410 MtrunA17_Chr3g0121351 40.185 433 236 8 71 488 115 539 1.83e-87 281
Msa0802410 MtrunA17_Chr4g0058591 44.817 328 173 4 103 428 200 521 7.88e-87 277
Msa0802410 MtrunA17_Chr4g0063551 37.209 516 285 11 3 486 26 534 5.68e-86 279
Msa0802410 MtrunA17_Chr2g0277821 42.746 386 209 6 103 483 502 880 7.77e-86 287
Msa0802410 MtrunA17_Chr1g0176041 38.926 447 250 8 72 502 125 564 1.11e-85 276
Msa0802410 MtrunA17_Chr3g0107851 38.845 381 221 5 103 475 115 491 1.75e-80 261
Msa0802410 MtrunA17_Chr1g0200181 38.228 395 227 8 96 480 136 523 5.84e-78 256
Msa0802410 MtrunA17_Chr1g0157691 37.468 395 230 8 96 480 138 525 3.32e-76 251
Msa0802410 MtrunA17_Chr4g0076491 37.157 401 220 6 108 485 290 681 8.66e-75 250
Msa0802410 MtrunA17_Chr6g0449741 36.207 406 225 7 103 485 247 641 9.03e-73 244
Msa0802410 MtrunA17_Chr5g0442191 39.045 356 200 9 110 459 86 430 1.23e-72 241
Msa0802410 MtrunA17_Chr3g0095031 41.018 334 190 5 120 453 107 433 2.05e-72 240
Msa0802410 MtrunA17_Chr7g0271121 38.333 360 213 6 100 458 105 456 4.23e-67 230
Msa0802410 MtrunA17_Chr1g0193491 36.658 371 222 8 110 476 119 480 1.22e-65 224
Msa0802410 MtrunA17_Chr6g0483491 38.611 360 207 7 97 453 2 350 1.97e-65 218
Msa0802410 MtrunA17_Chr7g0236841 38.611 360 207 7 97 453 2 350 2.28e-65 218
Msa0802410 MtrunA17_Chr6g0475251 37.746 355 206 6 127 476 127 471 1.36e-60 211
Msa0802410 MtrunA17_Chr1g0204391 36.490 359 201 5 120 457 61 413 3.13e-59 206
Msa0802410 MtrunA17_Chr7g0247191 33.067 375 226 7 95 459 133 492 3.48e-58 201
Msa0802410 MtrunA17_Chr7g0247221 33.243 367 225 6 98 459 134 485 7.48e-58 200
Msa0802410 MtrunA17_Chr7g0247181 33.243 367 225 6 98 459 131 482 8.12e-58 200
Msa0802410 MtrunA17_Chr3g0098121 32.678 407 243 8 106 497 153 543 1.43e-57 204
Msa0802410 MtrunA17_Chr4g0040761 35.014 357 218 7 106 458 20 366 1.81e-57 204
Msa0802410 MtrunA17_Chr2g0300291 32.938 422 249 10 53 464 100 497 4.25e-57 202
Msa0802410 MtrunA17_Chr2g0310581 32.908 392 244 6 94 479 44 422 2.83e-56 196
Msa0802410 MtrunA17_Chr6g0461751 32.987 385 250 7 103 484 138 517 2.11e-54 192
Msa0802410 MtrunA17_Chr4g0070981 33.247 388 238 7 96 474 28 403 2.89e-53 186
Msa0802410 MtrunA17_Chr2g0299681 34.341 364 222 6 97 458 36 384 3.67e-53 185
Msa0802410 MtrunA17_Chr2g0297261 31.856 361 232 4 98 456 27 375 2.23e-52 183
Msa0802410 MtrunA17_Chr8g0342861 33.333 369 228 6 96 458 28 384 2.77e-51 180
Msa0802410 MtrunA17_Chr2g0329931 33.333 369 228 6 96 458 28 384 6.07e-51 179
Msa0802410 MtrunA17_Chr8g0347161 32.174 460 260 16 24 451 18 457 3.36e-50 181
Msa0802410 MtrunA17_Chr3g0114081 34.127 378 217 12 105 457 14 384 7.57e-49 177
Msa0802410 MtrunA17_Chr8g0347171 30.889 450 277 13 24 451 78 515 2.18e-47 174
Msa0802410 MtrunA17_Chr6g0466611 32.308 390 240 9 102 474 139 521 2.52e-47 175
Msa0802410 MtrunA17_Chr8g0347151 32.918 401 240 12 68 451 168 556 1.64e-45 169
Msa0802410 MtrunA17_Chr7g0263771 31.768 362 231 7 121 480 151 498 1.00e-44 166
Msa0802410 MtrunA17_Chr7g0236831 29.825 399 210 9 121 453 181 575 4.09e-42 160
Msa0802410 MtrunA17_Chr4g0003441 32.081 346 210 7 121 458 126 454 1.40e-40 152
Msa0802410 MtrunA17_Chr2g0307471 31.793 368 226 9 102 457 88 442 2.07e-40 153
Msa0802410 MtrunA17_Chr4g0062301 33.133 332 207 8 121 446 115 437 2.57e-40 154
Msa0802410 MtrunA17_Chr8g0386451 29.885 435 248 12 41 451 242 643 2.70e-40 155
Msa0802410 MtrunA17_Chr1g0179761 31.407 398 218 15 90 451 65 443 8.35e-40 150
Msa0802410 MtrunA17_Chr2g0309551 30.562 409 225 11 102 456 106 509 8.31e-39 149
Msa0802410 MtrunA17_Chr4g0029191 27.727 440 241 11 92 457 29 465 2.31e-37 145
Msa0802410 MtrunA17_Chr1g0149251 31.804 327 196 8 141 458 2 310 3.31e-37 140
Msa0802410 MtrunA17_Chr2g0301281 27.586 406 222 9 121 457 60 462 2.54e-36 142
Msa0802410 MtrunA17_Chr4g0034411 31.694 366 220 10 99 446 62 415 1.70e-35 141
Msa0802410 MtrunA17_Chr3g0145781 27.079 469 295 17 23 456 50 506 2.83e-35 139
Msa0802410 MtrunA17_Chr5g0443991 32.047 337 212 8 128 457 101 427 1.61e-34 138
Msa0802410 MtrunA17_Chr1g0192021 28.607 402 232 11 104 458 25 418 3.77e-32 130
Msa0802410 MtrunA17_Chr5g0429221 27.604 384 255 10 103 480 1 367 2.71e-30 122
Msa0802410 MtrunA17_Chr4g0074521 28.831 385 212 16 102 446 79 441 5.84e-25 107
Msa0802410 MtrunA17_Chr1g0169331 26.810 373 228 9 120 458 8 369 1.07e-24 106
Msa0802410 MtrunA17_Chr4g0039471 35.577 208 110 6 94 292 215 407 1.88e-24 105
Msa0802410 MtrunA17_Chr4g0039471 31.746 189 81 4 106 292 3 145 1.39e-15 79.0
Msa0802410 MtrunA17_Chr8g0349951 36.735 147 84 3 97 241 2 141 2.98e-20 87.8
Msa0802410 MtrunA17_Chr4g0058601 56.452 62 27 0 418 479 9 70 6.50e-20 85.5
Msa0802410 MtrunA17_Chr8g0354761 24.566 346 226 10 128 457 33 359 1.51e-19 91.3
Msa0802410 MtrunA17_Chr8g0342851 26.074 326 201 9 134 458 4 290 2.66e-19 89.0
Msa0802410 MtrunA17_Chr3g0137901 37.143 105 66 0 354 458 42 146 5.33e-19 84.7
Msa0802410 MtrunA17_Chr4g0062321 31.132 212 139 5 214 422 26 233 9.98e-18 82.8
Msa0802410 MtrunA17_Chr4g0025131 33.628 226 121 7 67 284 24 228 1.28e-17 83.2
Msa0802410 MtrunA17_Chr1g0171481 23.932 351 252 11 139 483 176 517 4.06e-16 81.3
Msa0802410 MtrunA17_Chr8g0377041 23.691 401 257 10 69 457 233 596 9.99e-16 80.5
Msa0802410 MtrunA17_Chr0c30g0494091 30.986 213 123 8 97 294 74 277 4.33e-14 74.3
Msa0802410 MtrunA17_Chr4g0025141 29.747 158 86 3 355 501 85 228 8.85e-14 71.2
Msa0802410 MtrunA17_Chr8g0364251 35.433 127 73 3 354 478 436 555 2.35e-13 72.8
Msa0802410 MtrunA17_Chr1g0155691 33.333 132 61 5 377 505 27 134 6.30e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802410 AT1G31970.1 77.626 438 97 1 88 524 100 537 0.0 718
Msa0802410 AT5G63120.2 48.284 408 199 6 78 483 143 540 1.66e-127 385
Msa0802410 AT1G55150.1 44.444 459 234 5 31 487 39 478 5.69e-126 378
Msa0802410 AT1G55150.2 44.444 459 234 5 31 487 64 503 2.44e-125 377
Msa0802410 AT5G14610.6 43.928 387 206 7 106 489 163 541 1.97e-102 322
Msa0802410 AT5G14610.2 43.928 387 206 7 106 489 163 541 2.32e-102 321
Msa0802410 AT5G14610.5 43.928 387 206 7 106 489 171 549 3.78e-102 321
Msa0802410 AT3G01540.1 42.894 387 210 7 106 489 160 538 1.18e-100 316
Msa0802410 AT3G01540.4 42.894 387 210 7 106 489 160 538 1.39e-100 316
Msa0802410 AT3G01540.2 42.894 387 210 7 106 489 160 538 1.39e-100 316
Msa0802410 AT3G01540.3 42.894 387 210 7 106 489 160 538 1.39e-100 316
Msa0802410 AT5G14610.7 44.032 377 202 6 114 489 42 410 3.70e-100 311
Msa0802410 AT5G14610.3 44.032 377 202 6 114 489 42 410 3.70e-100 311
Msa0802410 AT3G06480.1 44.750 400 204 8 88 483 423 809 2.71e-99 323
Msa0802410 AT5G14610.1 43.832 381 204 7 111 489 237 609 5.30e-98 312
Msa0802410 AT5G63120.1 45.029 342 176 6 78 417 143 474 2.90e-93 293
Msa0802410 AT5G63120.3 45.029 342 176 6 78 417 143 474 5.43e-93 292
Msa0802410 AT5G63120.4 45.029 342 176 6 78 417 143 474 5.43e-93 292
Msa0802410 AT5G63120.5 45.029 342 176 6 78 417 143 474 5.43e-93 292
Msa0802410 AT2G42520.2 41.966 417 222 7 85 488 144 553 1.31e-90 290
Msa0802410 AT2G42520.1 41.966 417 222 7 85 488 144 553 1.31e-90 290
Msa0802410 AT2G42520.3 41.966 417 222 7 85 488 144 553 1.31e-90 290
Msa0802410 AT1G20920.2 42.105 399 217 7 103 494 190 581 2.71e-90 294
Msa0802410 AT2G47330.1 42.494 393 215 7 95 483 219 604 5.52e-90 292
Msa0802410 AT3G58570.1 42.308 416 214 9 93 490 135 542 8.03e-90 289
Msa0802410 AT1G20920.4 42.105 399 217 7 103 494 528 919 6.56e-89 296
Msa0802410 AT1G20920.6 42.105 399 217 7 103 494 528 919 6.56e-89 296
Msa0802410 AT1G20920.3 42.105 399 217 7 103 494 528 919 6.56e-89 296
Msa0802410 AT1G20920.7 42.105 399 217 7 103 494 528 919 6.56e-89 296
Msa0802410 AT1G20920.5 42.105 399 217 7 103 494 528 919 6.56e-89 296
Msa0802410 AT1G20920.1 42.105 399 217 7 103 494 528 919 6.56e-89 296
Msa0802410 AT3G58510.1 43.272 379 202 7 119 488 169 543 1.69e-87 281
Msa0802410 AT3G58510.3 43.272 379 202 7 119 488 169 543 1.69e-87 281
Msa0802410 AT3G58510.2 43.272 379 202 7 119 488 169 543 1.69e-87 281
Msa0802410 AT3G09620.1 40.415 386 189 8 103 483 395 744 7.18e-81 272
Msa0802410 AT3G09620.2 40.415 386 189 8 103 483 396 745 7.20e-81 272
Msa0802410 AT5G14610.4 42.090 335 183 7 106 437 171 497 9.27e-81 261
Msa0802410 AT5G51280.1 37.561 410 239 8 96 495 138 540 4.77e-79 259
Msa0802410 AT3G06480.2 42.274 343 181 8 88 426 423 752 1.15e-76 257
Msa0802410 AT3G22330.1 41.108 343 193 6 118 459 120 454 1.60e-76 253
Msa0802410 AT4G33370.1 37.136 412 238 8 96 495 89 491 1.28e-75 248
Msa0802410 AT3G22310.2 40.974 349 195 7 108 453 120 460 1.75e-75 249
Msa0802410 AT3G22310.1 40.974 349 195 7 108 453 120 460 2.43e-75 249
Msa0802410 AT2G33730.1 36.207 406 227 6 103 485 312 708 2.40e-71 242
Msa0802410 AT5G26742.1 39.496 357 205 7 111 462 109 459 1.66e-66 229
Msa0802410 AT5G26742.2 39.496 357 205 7 111 462 109 459 1.69e-66 229
Msa0802410 AT5G60990.1 36.364 363 219 6 97 452 2 359 2.87e-66 221
Msa0802410 AT5G26742.3 40.606 330 185 8 137 462 44 366 3.14e-65 224
Msa0802410 AT1G28180.1 37.465 355 214 4 132 485 3 350 1.94e-63 211
Msa0802410 AT5G62190.1 38.012 342 201 6 121 457 115 450 9.14e-62 214
Msa0802410 AT1G16280.1 35.537 363 219 5 101 458 55 407 2.90e-60 206
Msa0802410 AT4G00660.1 34.332 367 221 7 98 459 123 474 8.07e-60 206
Msa0802410 AT4G00660.2 34.332 367 221 7 98 459 123 474 8.07e-60 206
Msa0802410 AT2G45810.1 33.607 366 225 5 98 459 146 497 9.19e-58 201
Msa0802410 AT4G16630.1 34.959 369 216 8 106 464 169 523 2.83e-57 204
Msa0802410 AT3G61240.2 32.979 376 226 5 91 459 111 467 1.12e-56 197
Msa0802410 AT3G61240.1 32.979 376 226 5 91 459 111 467 1.12e-56 197
Msa0802410 AT3G02065.3 32.250 400 255 6 103 493 109 501 5.31e-55 193
Msa0802410 AT3G02065.2 32.250 400 255 6 103 493 109 501 5.31e-55 193
Msa0802410 AT1G77030.1 35.180 361 212 8 106 458 30 376 6.73e-54 195
Msa0802410 AT3G19760.1 32.584 356 226 5 103 456 34 377 1.30e-52 184
Msa0802410 AT3G13920.4 33.515 367 225 6 97 459 28 379 2.56e-52 183
Msa0802410 AT3G13920.1 33.333 369 228 6 97 459 28 384 8.97e-52 182
Msa0802410 AT1G72730.1 33.621 348 219 4 121 468 60 395 1.03e-51 182
Msa0802410 AT3G13920.3 33.424 368 227 6 97 458 18 373 1.28e-51 181
Msa0802410 AT1G54270.2 33.607 366 224 6 97 458 28 378 1.74e-51 181
Msa0802410 AT3G13920.2 33.333 369 228 6 97 459 28 384 2.85e-51 181
Msa0802410 AT1G51380.1 31.742 356 229 5 103 456 21 364 3.37e-51 180
Msa0802410 AT3G13920.5 33.333 369 228 6 97 459 32 388 4.47e-51 180
Msa0802410 AT1G54270.1 33.424 368 227 6 97 458 28 383 6.80e-51 179
Msa0802410 AT3G02065.1 31.892 370 238 5 131 493 2 364 9.98e-50 175
Msa0802410 AT3G09720.2 29.747 474 279 13 23 484 80 511 4.23e-48 175
Msa0802410 AT3G09720.1 29.747 474 279 13 23 484 80 511 4.23e-48 175
Msa0802410 AT4G09730.1 31.186 388 243 9 103 473 111 491 4.79e-48 176
Msa0802410 AT5G08610.1 33.333 372 221 10 98 451 376 738 2.65e-45 171
Msa0802410 AT1G71370.1 32.337 368 231 10 102 457 12 373 5.55e-45 167
Msa0802410 AT5G65900.1 32.133 361 231 8 104 458 154 506 4.42e-44 165
Msa0802410 AT5G63630.1 31.892 370 238 7 93 451 44 410 7.38e-44 163
Msa0802410 AT5G05450.1 33.048 351 216 8 122 457 36 382 1.15e-43 164
Msa0802410 AT5G08620.1 31.675 382 243 9 83 451 60 436 1.70e-43 162
Msa0802410 AT5G63630.2 31.892 370 238 7 93 451 238 604 3.93e-43 163
Msa0802410 AT5G11170.1 31.579 361 229 8 121 478 65 410 4.42e-42 156
Msa0802410 AT5G11200.1 31.579 361 229 8 121 478 65 410 4.42e-42 156
Msa0802410 AT3G18600.1 33.333 336 213 6 121 453 108 435 6.34e-41 155
Msa0802410 AT1G63250.1 32.425 367 233 9 97 451 322 685 3.35e-39 152
Msa0802410 AT3G53110.1 31.510 384 230 13 94 457 81 451 1.90e-38 147
Msa0802410 AT3G16840.2 28.535 396 216 9 122 453 211 603 2.28e-38 150
Msa0802410 AT3G16840.1 28.535 396 216 9 122 453 210 602 2.32e-38 150
Msa0802410 AT2G07750.1 32.425 367 233 9 97 451 369 732 3.54e-38 149
Msa0802410 AT5G11170.2 31.975 319 202 7 141 456 2 308 6.77e-37 140
Msa0802410 AT1G12770.2 27.861 402 242 9 102 455 108 509 1.60e-36 142
Msa0802410 AT1G12770.1 27.861 402 242 9 102 455 108 509 1.60e-36 142
Msa0802410 AT5G54910.1 30.529 416 265 12 99 506 66 465 2.94e-36 144
Msa0802410 AT5G11200.3 29.024 379 215 7 121 456 65 432 1.09e-35 139
Msa0802410 AT2G40700.1 28.117 409 218 12 121 457 50 454 4.07e-34 136
Msa0802410 AT3G06980.1 28.329 413 246 16 93 469 363 761 7.25e-34 137
Msa0802410 AT4G34910.1 28.900 391 229 8 102 447 44 430 1.43e-33 135
Msa0802410 AT1G71280.2 32.075 318 178 10 111 421 24 310 1.48e-31 125
Msa0802410 AT1G71280.1 31.348 319 181 9 111 422 24 311 4.13e-31 126
Msa0802410 AT1G51380.2 30.116 259 167 5 103 359 21 267 3.04e-28 114
Msa0802410 AT5G19210.2 29.759 373 204 15 111 446 83 434 1.66e-27 115
Msa0802410 AT1G51380.4 31.818 220 139 4 103 320 21 231 3.03e-27 112
Msa0802410 AT1G51380.3 31.818 220 139 4 103 320 21 231 4.89e-27 111
Msa0802410 AT4G15850.1 25.974 385 207 11 140 459 73 444 1.04e-23 105
Msa0802410 AT2G28600.1 26.923 312 208 8 176 481 194 491 3.72e-19 90.9
Msa0802410 AT5G11200.2 29.091 220 141 4 239 456 244 450 5.01e-19 90.5
Msa0802410 AT5G11200.2 32.447 188 116 5 121 305 65 244 4.33e-15 78.2
Msa0802410 AT1G28180.2 38.053 113 70 0 132 244 3 115 1.92e-18 81.6
Msa0802410 AT5G19210.1 27.941 272 155 10 203 446 19 277 7.97e-16 79.0
Msa0802410 AT5G19210.3 27.941 272 155 10 203 446 19 277 7.97e-16 79.0
Msa0802410 AT1G27880.2 22.678 463 294 12 46 496 215 625 6.70e-14 75.1
Msa0802410 AT1G27880.1 22.678 463 294 12 46 496 215 625 7.58e-14 75.1
Msa0802410 AT1G59990.2 32.231 121 77 2 355 475 426 541 1.53e-11 67.4
Msa0802410 AT1G59990.1 32.231 121 77 2 355 475 426 541 1.65e-11 67.4

Find 137 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTAGCTCAGGAATTTA+TGG 0.153581 5_3:-16777383 Msa0802410:CDS
ACCATGTATCGGCTTGTAAT+TGG 0.198915 5_3:-16775547 Msa0802410:three_prime_UTR
GTGAAGAGGTTTGAGGATTC+AGG 0.231036 5_3:-16780730 Msa0802410:CDS
GAAGATTATGTTCATAGAAT+TGG 0.238610 5_3:-16776215 Msa0802410:CDS
TGGCACACATGTTAAGAAAA+AGG 0.253159 5_3:-16775932 Msa0802410:intron
GAATTAGTGAGGAAAGAAAT+AGG 0.254501 5_3:-16775353 Msa0802410:three_prime_UTR
ATATAGGAGTCCAAGCTTTA+TGG 0.255279 5_3:-16775797 Msa0802410:intron
CGTTATTTATTTCTTCAAAA+AGG 0.256113 5_3:-16775623 Msa0802410:three_prime_UTR
GGAATATTTCAGGGACTTGC+TGG 0.276066 5_3:-16776015 Msa0802410:intron
TGCGAGCCATTGTAGGAAAA+TGG 0.287585 5_3:+16781049 None:intergenic
CTAGGGAAGACACTTGCTTT+TGG 0.301902 5_3:-16779611 Msa0802410:intron
GTGGAATCAGTTTGTTTGTA+TGG 0.320024 5_3:-16778286 Msa0802410:CDS
ATTCTTCACACATTTGAATA+AGG 0.322677 5_3:-16776153 Msa0802410:intron
ACATAATCTTCTAGAGTTAG+AGG 0.337678 5_3:+16776227 None:intergenic
TATTCAAGATCTGGTTGAAA+TGG 0.345946 5_3:-16778027 Msa0802410:CDS
GAGTTCTGTGTTGTTGTTAA+GGG 0.348271 5_3:+16780990 None:intergenic
TTGATTGGAATTGCGGCAAC+TGG 0.349586 5_3:-16780613 Msa0802410:CDS
TTCATCCAGGATATTGTCAT+TGG 0.350181 5_3:-16778062 Msa0802410:intron
TATAGGAGTCCAAGCTTTAT+GGG 0.366000 5_3:-16775796 Msa0802410:intron
TCCCACTACTATCCCTAAAT+AGG 0.366785 5_3:-16781164 Msa0802410:five_prime_UTR
TGATGTGTTGGTTTCGGCCT+CGG 0.367548 5_3:-16780806 Msa0802410:CDS
CCACAAAAGATACTTCTTGT+AGG 0.370133 5_3:+16777994 None:intergenic
ATACTTGGTCAGACATGTTC+TGG 0.373447 5_3:-16777604 Msa0802410:intron
TTCTGGTTCGGTGGATAAAA+CGG 0.378366 5_3:+16781017 None:intergenic
AAGATTATGTTCATAGAATT+GGG 0.393407 5_3:-16776214 Msa0802410:CDS
CGGCGGTGATGTGTTGGTTT+CGG 0.396234 5_3:-16780812 Msa0802410:CDS
TGAGTTCTGTGTTGTTGTTA+AGG 0.400441 5_3:+16780989 None:intergenic
AGTGATTTGTGGTTGTTTGT+TGG 0.401420 5_3:+16778258 None:intergenic
GGAATTGCGGCAACTGGGTC+AGG 0.401748 5_3:-16780607 Msa0802410:intron
CAAATAGTCCGCTCTATACT+TGG 0.405601 5_3:-16777619 Msa0802410:CDS
CCATGTATCGGCTTGTAATT+GGG 0.408424 5_3:-16775546 Msa0802410:three_prime_UTR
CTCCGATTCAATCACGTGCT+TGG 0.415933 5_3:-16780660 Msa0802410:CDS
GCTTTATGGGGCTCACTTCA+AGG 0.417352 5_3:-16775783 Msa0802410:CDS
TTAGACTTTGGAGCATCAAC+AGG 0.417852 5_3:+16775755 None:intergenic
TATTTGCATGACATCATGAT+TGG 0.425052 5_3:+16777245 None:intergenic
TTGATCACTACTTCAACATC+TGG 0.425118 5_3:+16776260 None:intergenic
TCAAATGTGTGAAGAATGTA+TGG 0.428680 5_3:+16776159 None:intergenic
TTCTTTCCAGTCACCACAAT+CGG 0.429048 5_3:+16780778 None:intergenic
CCAAATTTCAAAAGATCGTC+TGG 0.430831 5_3:+16775952 None:intergenic
GAAAACTTAAAATCATACAT+AGG 0.431801 5_3:+16775464 None:intergenic
AATTAGTGAGGAAAGAAATA+GGG 0.433180 5_3:-16775352 Msa0802410:three_prime_UTR
AACTTGTGACAGGTTGTTGT+AGG 0.435320 5_3:-16777285 Msa0802410:intron
AAAACTTAAAATCATACATA+GGG 0.437566 5_3:+16775465 None:intergenic
GTTCATAGAATTGGGCGGAC+TGG 0.441574 5_3:-16776206 Msa0802410:CDS
GAATGGAAGCTGTCCTTTGA+TGG 0.441746 5_3:-16776776 Msa0802410:intron
CAAATCACTGCACTAAAATC+TGG 0.442805 5_3:-16778244 Msa0802410:CDS
CCCTCGTAGGAGAGAGCATA+AGG 0.444894 5_3:+16779516 None:intergenic
CTTTCTCAGGAATCGAGTAT+TGG 0.445276 5_3:-16777066 Msa0802410:intron
CCCAATTACAAGCCGATACA+TGG 0.448445 5_3:+16775546 None:intergenic
TTGTTGTTAAGGGTTTGTTC+TGG 0.450386 5_3:+16781000 None:intergenic
TTGGATGGTCGTGATTTGAT+TGG 0.453523 5_3:-16780628 Msa0802410:CDS
CATGCAAATAGTTGAGGTAT+TGG 0.459321 5_3:-16777232 Msa0802410:CDS
TGATGTGGCTGCACGAGGAT+TGG 0.459395 5_3:-16776288 Msa0802410:CDS
GTTAAGGGTTTGTTCTGGTT+CGG 0.462184 5_3:+16781005 None:intergenic
TCCCGGTCGTATTCAAGATC+TGG 0.466067 5_3:-16778036 Msa0802410:CDS
GAATATTTCAGGGACTTGCT+GGG 0.474454 5_3:-16776014 Msa0802410:intron
AACCAGATCTTGAATACGAC+CGG 0.475620 5_3:+16778034 None:intergenic
CCTTATGCTCTCTCCTACGA+GGG 0.480938 5_3:-16779516 Msa0802410:CDS
GCACTATCATTATTCAAGAA+TGG 0.480956 5_3:-16776793 Msa0802410:CDS
GAATGTGCTTGAGTGTTGTA+AGG 0.481590 5_3:-16780698 Msa0802410:CDS
CAACACTCAAGCACATTCTC+AGG 0.482405 5_3:+16780703 None:intergenic
ATTCAAGATCTGGTTGAAAT+GGG 0.496635 5_3:-16778026 Msa0802410:CDS
TGAAGAGGTTTGAGGATTCA+GGG 0.496727 5_3:-16780729 Msa0802410:CDS
CGCCGTGTATTTCTCATCTC+CGG 0.502457 5_3:+16780753 None:intergenic
TTCATAACATGCATAATAGC+TGG 0.502973 5_3:+16779584 None:intergenic
TGATGATGAAGACTAAATAC+TGG 0.503492 5_3:-16775711 Msa0802410:exon
AAAGAAATAGGGTGAAATGT+AGG 0.506658 5_3:-16775341 Msa0802410:three_prime_UTR
AGCAGTTCATCACTTAGCTC+AGG 0.508831 5_3:-16777392 Msa0802410:CDS
GCAAAGAGGATTCCGACCCT+TGG 0.519670 5_3:+16779538 None:intergenic
ACTGGACGAGCTGGTAAGAA+AGG 0.524323 5_3:-16776188 Msa0802410:CDS
CCCAAAAGAAAACACGAAAA+CGG 0.527156 5_3:-16780919 Msa0802410:CDS
ATAAAACAGCATACCATCAA+AGG 0.542882 5_3:+16776763 None:intergenic
TTACAACGGCGGTGATGTGT+TGG 0.544592 5_3:-16780818 Msa0802410:CDS
GTTGGATGAATATTTGAAAG+TGG 0.546670 5_3:-16775669 Msa0802410:three_prime_UTR
AGCAGATCGGATGCTTGACA+TGG 0.547306 5_3:-16777650 Msa0802410:CDS
GGCCAAGCACGTGATTGAAT+CGG 0.548949 5_3:+16780658 None:intergenic
CACGGCGGTGAAGAGGTTTG+AGG 0.550986 5_3:-16780737 Msa0802410:CDS
GAAGAGCAAGGGTTCTTCCA+AGG 0.552135 5_3:-16779555 Msa0802410:CDS
TGTACAAATGGGAAACCACA+CGG 0.557076 5_3:-16777034 Msa0802410:CDS
ATGAATAAGCGGAAGAGCAA+GGG 0.557187 5_3:-16779566 Msa0802410:CDS
ATTGGGCGGACTGGACGAGC+TGG 0.562548 5_3:-16776197 Msa0802410:CDS
GAAGTGAGCCCCATAAAGCT+TGG 0.565873 5_3:+16775787 None:intergenic
TCAGATGTATTGTGTGATGC+TGG 0.566166 5_3:-16778322 Msa0802410:CDS
AAGGGTTTGTTCTGGTTCGG+TGG 0.568815 5_3:+16781008 None:intergenic
TGGTTATGTTCAGTGCTACA+TGG 0.571493 5_3:-16777420 Msa0802410:CDS
GGCCTCGGATGAACCGATTG+TGG 0.573991 5_3:-16780791 Msa0802410:CDS
GAATCAGTTTGTTTGTATGG+TGG 0.575683 5_3:-16778283 Msa0802410:CDS
CCAGAGGCGAAAAGCTGAAG+AGG 0.580940 5_3:+16781095 None:intergenic
GATATTGTCATTGGAACTCC+CGG 0.581051 5_3:-16778053 Msa0802410:CDS
AGAAATACACGGCGGTGAAG+AGG 0.583314 5_3:-16780744 Msa0802410:CDS
GCCTTATGCTCTCTCCTACG+AGG 0.583509 5_3:-16779517 Msa0802410:CDS
TGGAAAGCAGTGTCTATAAG+TGG 0.585177 5_3:-16776844 Msa0802410:CDS
GCACGTGATTGAATCGGAGA+AGG 0.586015 5_3:+16780664 None:intergenic
GATGAACCGATTGTGGTGAC+TGG 0.587028 5_3:-16780784 Msa0802410:CDS
TCGTGATTTGATTGGAATTG+CGG 0.593562 5_3:-16780620 Msa0802410:CDS
GCATCCGATCTGCTTCATCA+AGG 0.595521 5_3:+16777659 None:intergenic
AATATTTCAGGGACTTGCTG+GGG 0.596100 5_3:-16776013 Msa0802410:intron
CCATTGTAGGAAAATGGTGA+TGG 0.596328 5_3:+16781055 None:intergenic
CTCCTATTTAGGGATAGTAG+TGG 0.596502 5_3:+16781162 None:intergenic
TGATTGGAATTGCGGCAACT+GGG 0.600555 5_3:-16780612 Msa0802410:CDS
TGTGATGCTGGTAAATCTTG+TGG 0.600721 5_3:-16778310 Msa0802410:CDS
AAGAGCAAGGGTTCTTCCAA+GGG 0.602731 5_3:-16779554 Msa0802410:CDS
TGATGTCATGCAAATAGTTG+AGG 0.605250 5_3:-16777238 Msa0802410:CDS
TATGAATAAGCGGAAGAGCA+AGG 0.607867 5_3:-16779567 Msa0802410:CDS
TCCTATTTAGGGATAGTAGT+GGG 0.608591 5_3:+16781163 None:intergenic
GCTAAGTGATGAACTGCTAA+CGG 0.609098 5_3:+16777397 None:intergenic
GCTACTGATGTGGCTGCACG+AGG 0.611530 5_3:-16776293 Msa0802410:CDS
GTACAAATGGGAAACCACAC+GGG 0.611553 5_3:-16777033 Msa0802410:CDS
GTGGTGACTGGAAAGAATGC+CGG 0.612595 5_3:-16780772 Msa0802410:CDS
AATGTGCTTGAGTGTTGTAA+GGG 0.615083 5_3:-16780697 Msa0802410:CDS
GCAAGGGTTCTTCCAAGGGT+CGG 0.615294 5_3:-16779550 Msa0802410:CDS
TTATGCATGTTATGAATAAG+CGG 0.617150 5_3:-16779577 Msa0802410:CDS
GTGGAGAAAATGCTTCAACA+AGG 0.622499 5_3:-16777011 Msa0802410:CDS
AGGTCCTTGATGAAGCAGAT+CGG 0.623442 5_3:-16777663 Msa0802410:CDS
TGCTGGTAAATCTTGTGGTG+TGG 0.625650 5_3:-16778305 Msa0802410:CDS
TGGAGAAAATGCTTCAACAA+GGG 0.625673 5_3:-16777010 Msa0802410:intron
ACAGGTTGTTGTAGGCTCAG+AGG 0.629287 5_3:-16777277 Msa0802410:intron
CACCACAATCGGTTCATCCG+AGG 0.630004 5_3:+16780789 None:intergenic
TGGGCAGATTGCTACTGATG+TGG 0.630709 5_3:-16776303 Msa0802410:intron
GGAGAGAGCATAAGGCAAAG+AGG 0.632906 5_3:+16779524 None:intergenic
TTTCATCTAAACAAAGGACA+AGG 0.633550 5_3:+16775378 None:intergenic
GCAGATCGGATGCTTGACAT+GGG 0.636956 5_3:-16777649 Msa0802410:CDS
TGTTGAGCTAGCTCCCTCGT+AGG 0.646096 5_3:+16779503 None:intergenic
AGTGAAGCAGCTCGAACCAG+AGG 0.649135 5_3:+16781079 None:intergenic
ATAGGAGTCCAAGCTTTATG+GGG 0.655015 5_3:-16775795 Msa0802410:intron
ACCAGATCTTGAATACGACC+GGG 0.658494 5_3:+16778035 None:intergenic
CAAATGGGAAACCACACGGG+TGG 0.659561 5_3:-16777030 Msa0802410:CDS
GAGGCGAAAAGCTGAAGAGG+TGG 0.673406 5_3:+16781098 None:intergenic
AAACTTAAAATCATACATAG+GGG 0.674503 5_3:+16775466 None:intergenic
ATCACAGCATGAGCGCACAA+AGG 0.688375 5_3:-16776815 Msa0802410:CDS
CAAATGTGTGAAGAATGTAT+GGG 0.699602 5_3:+16776160 None:intergenic
TGCCGGAGATGAGAAATACA+CGG 0.715333 5_3:-16780755 Msa0802410:CDS
ATGTCTGACCAAGTATAGAG+CGG 0.717626 5_3:+16777611 None:intergenic
ATTATGTTCATAGAATTGGG+CGG 0.720125 5_3:-16776211 Msa0802410:CDS
TCGGAGGAAAATTACAACGG+CGG 0.733343 5_3:-16780829 Msa0802410:CDS
AAATCGGAGGAAAATTACAA+CGG 0.736965 5_3:-16780832 Msa0802410:CDS
CGGAGATGAGAAATACACGG+CGG 0.831076 5_3:-16780752 Msa0802410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATCTTTAGTATT+AGG - chr5_3:16776036-16776055 Msa0802410:intron 10.0%
!! AATATTAATCTTTAGTATTA+GGG - chr5_3:16776037-16776056 Msa0802410:intron 10.0%
!! AAAAAAAAACTAAAATACAA+GGG + chr5_3:16777403-16777422 None:intergenic 10.0%
!! AAAAAAAAAACTAAAATACA+AGG + chr5_3:16777404-16777423 None:intergenic 10.0%
!! AATTTAATTGTCTATAAAAT+AGG + chr5_3:16778394-16778413 None:intergenic 10.0%
!!! TTCAATGAATATATTTTATT+TGG - chr5_3:16778579-16778598 Msa0802410:intron 10.0%
!! ATAATATAATAATATATACC+TGG - chr5_3:16779553-16779572 Msa0802410:CDS 10.0%
!!! TAGAGATTTTATGATTTTTA+GGG + chr5_3:16775378-16775397 None:intergenic 15.0%
!!! ATAGAGATTTTATGATTTTT+AGG + chr5_3:16775379-16775398 None:intergenic 15.0%
!!! TGTAACTTTATTTTATCTTT+TGG + chr5_3:16776249-16776268 None:intergenic 15.0%
!!! ACGTTTAATTTTTATTTGTT+TGG - chr5_3:16777099-16777118 Msa0802410:intron 15.0%
!!! ATGAATATATTTTATTTGGT+TGG - chr5_3:16778583-16778602 Msa0802410:intron 15.0%
!! CTTATATATAACAGAAATAA+AGG + chr5_3:16780424-16780443 None:intergenic 15.0%
!!! TTATTTCTGTTATATATAAG+TGG - chr5_3:16780424-16780443 Msa0802410:intron 15.0%
!!! AATGTTATTTTTTTAGACTT+TGG + chr5_3:16780759-16780778 None:intergenic 15.0%
!! AAAACTTAAAATCATACATA+GGG + chr5_3:16781037-16781056 None:intergenic 15.0%
!! ATGTGTTTGTATTATTGAAA+TGG - chr5_3:16775939-16775958 Msa0802410:CDS 20.0%
!! TATTATTGAAATGGTTGAAT+TGG - chr5_3:16775948-16775967 Msa0802410:CDS 20.0%
!!! TTGTTTTCATAATCTATCTT+TGG - chr5_3:16776291-16776310 Msa0802410:CDS 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr5_3:16776586-16776605 Msa0802410:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr5_3:16776587-16776606 Msa0802410:intron 20.0%
!!! TATCTTTTCTTTTTGTAACT+AGG - chr5_3:16776870-16776889 Msa0802410:intron 20.0%
!!! ATCTTTTCTTTTTGTAACTA+GGG - chr5_3:16776871-16776890 Msa0802410:intron 20.0%
!! AAAATAATATCCAAAGAGAA+AGG + chr5_3:16777196-16777215 None:intergenic 20.0%
!!! TTTAAACAAAGGGTTAATTT+TGG - chr5_3:16777429-16777448 Msa0802410:CDS 20.0%
!!! ACTTTTTTTTTCTTTCATAG+TGG - chr5_3:16777507-16777526 Msa0802410:intron 20.0%
!! TAAGTTAAAACAATGTAATG+AGG + chr5_3:16777833-16777852 None:intergenic 20.0%
!! TAATTGTCTATAAAATAGGA+CGG + chr5_3:16778390-16778409 None:intergenic 20.0%
!! ATAAGTTAAATAATGTCTTC+AGG - chr5_3:16779629-16779648 Msa0802410:intron 20.0%
!! TAAGTTAAATAATGTCTTCA+GGG - chr5_3:16779630-16779649 Msa0802410:intron 20.0%
!! AAAATAACAATTATCCAACA+TGG + chr5_3:16779875-16779894 None:intergenic 20.0%
!!! TATTTGTTTTCTCAATCTAA+TGG - chr5_3:16780176-16780195 Msa0802410:intron 20.0%
!!! ATTTGTTTTCTCAATCTAAT+GGG - chr5_3:16780177-16780196 Msa0802410:intron 20.0%
!! AAGATTATGTTCATAGAATT+GGG - chr5_3:16780285-16780304 Msa0802410:intron 20.0%
!! TAATATATTCAGAAGAGAAT+CGG + chr5_3:16780379-16780398 None:intergenic 20.0%
!! ATAACTTTCTGCTTTAATAT+AGG - chr5_3:16780686-16780705 Msa0802410:CDS 20.0%
!!! CGTTATTTATTTCTTCAAAA+AGG - chr5_3:16780876-16780895 Msa0802410:CDS 20.0%
!! TCAAAAAGGAAATAAGATAA+TGG - chr5_3:16780890-16780909 Msa0802410:CDS 20.0%
!! AAACTTAAAATCATACATAG+GGG + chr5_3:16781036-16781055 None:intergenic 20.0%
!! GAAAACTTAAAATCATACAT+AGG + chr5_3:16781038-16781057 None:intergenic 20.0%
!!! TAAGTTTTCAAAAACATTTG+AGG - chr5_3:16781049-16781068 Msa0802410:exon 20.0%
!!! ATTCTTTTTCATCTAAACAA+AGG + chr5_3:16781130-16781149 None:intergenic 20.0%
!!! GTTCTTTTTGTTTTTCTTCT+TGG + chr5_3:16775542-16775561 None:intergenic 25.0%
! TGAAGTTATTTATCCAAACA+GGG + chr5_3:16776196-16776215 None:intergenic 25.0%
! ATGAAGTTATTTATCCAAAC+AGG + chr5_3:16776197-16776216 None:intergenic 25.0%
! TCAAATAAACCAATCCAAAT+AGG - chr5_3:16776422-16776441 Msa0802410:intron 25.0%
! ATATTTAGAAATCCACACTT+AGG + chr5_3:16776853-16776872 None:intergenic 25.0%
! TTATGCATGTTATGAATAAG+CGG - chr5_3:16776922-16776941 Msa0802410:intron 25.0%
!!! AGTGGAAAATTGTTTTTGAT+TGG - chr5_3:16777274-16777293 Msa0802410:CDS 25.0%
!!! GTGGAAAATTGTTTTTGATT+GGG - chr5_3:16777275-16777294 Msa0802410:CDS 25.0%
!! AATGAGTTGGAAATTGTTAA+GGG - chr5_3:16777314-16777333 Msa0802410:intron 25.0%
! CCACGAACAAAAAAAATATT+TGG + chr5_3:16777638-16777657 None:intergenic 25.0%
!!! CCAAATATTTTTTTTGTTCG+TGG - chr5_3:16777635-16777654 Msa0802410:CDS 25.0%
!!! TTTTGGTTATAACATTCCAT+TGG + chr5_3:16777874-16777893 None:intergenic 25.0%
! GGAATGTTATAACCAAAATT+TGG - chr5_3:16777876-16777895 Msa0802410:intron 25.0%
!! AAATATCTGCAACCAAATTT+TGG + chr5_3:16777891-16777910 None:intergenic 25.0%
!!! TTTTGATAGTACCTGTAAAT+TGG - chr5_3:16777935-16777954 Msa0802410:intron 25.0%
!! TTTGATAGTACCTGTAAATT+GGG - chr5_3:16777936-16777955 Msa0802410:intron 25.0%
!!! ATACAGTAGAATGTTATTTC+TGG - chr5_3:16778008-16778027 Msa0802410:CDS 25.0%
!! ACAGCTACATTTTATCATTT+GGG + chr5_3:16778082-16778101 None:intergenic 25.0%
! AGAAAAAAGCTCCATAAATA+TGG + chr5_3:16778365-16778384 None:intergenic 25.0%
! AAATTCAGTAGAAATGCAAA+TGG + chr5_3:16778680-16778699 None:intergenic 25.0%
! AGTGAAACAAAAAATAAGCT+GGG + chr5_3:16779027-16779046 None:intergenic 25.0%
!! TGAAGATACATACTTTTACA+GGG + chr5_3:16779149-16779168 None:intergenic 25.0%
!! ATGAAGATACATACTTTTAC+AGG + chr5_3:16779150-16779169 None:intergenic 25.0%
! AAGATATTTAAACTTGTGAC+AGG - chr5_3:16779204-16779223 Msa0802410:intron 25.0%
!!! TACAAGATTTTAGCAAAAAG+AGG + chr5_3:16779412-16779431 None:intergenic 25.0%
! TAAAATCTTGTATCTTTCTC+AGG - chr5_3:16779420-16779439 Msa0802410:intron 25.0%
!!! TGGTTTTTGTTTTGTACAAA+TGG - chr5_3:16779453-16779472 Msa0802410:intron 25.0%
!!! GGTTTTTGTTTTGTACAAAT+GGG - chr5_3:16779454-16779473 Msa0802410:intron 25.0%
! AAGTTAAATAATGTCTTCAG+GGG - chr5_3:16779631-16779650 Msa0802410:intron 25.0%
!! GAAAACAATCAAAAGTTGAT+GGG + chr5_3:16779837-16779856 None:intergenic 25.0%
! AGAAAACAATCAAAAGTTGA+TGG + chr5_3:16779838-16779857 None:intergenic 25.0%
! ATAAAAAACATCATCTTAGG+AGG + chr5_3:16779947-16779966 None:intergenic 25.0%
! TGGATAAAAAACATCATCTT+AGG + chr5_3:16779950-16779969 None:intergenic 25.0%
! GTAAAGCTATAACTTCAAAA+GGG + chr5_3:16779998-16780017 None:intergenic 25.0%
! TGTAAAGCTATAACTTCAAA+AGG + chr5_3:16779999-16780018 None:intergenic 25.0%
! GAAGATTATGTTCATAGAAT+TGG - chr5_3:16780284-16780303 Msa0802410:intron 25.0%
! ATTCTTCACACATTTGAATA+AGG - chr5_3:16780346-16780365 Msa0802410:intron 25.0%
! ATAACAGAAATAAAGGACAA+AGG + chr5_3:16780417-16780436 None:intergenic 25.0%
!!! TGGTGACTTACATTTATTTT+TGG - chr5_3:16780808-16780827 Msa0802410:CDS 25.0%
!!! GACTTACATTTATTTTTGGT+TGG - chr5_3:16780812-16780831 Msa0802410:CDS 25.0%
!!! ATTTTTGTTGTACCATGTAT+CGG - chr5_3:16780941-16780960 Msa0802410:CDS 25.0%
! TAGATGAAAAAGAATTAGTG+AGG - chr5_3:16781135-16781154 Msa0802410:five_prime_UTR 25.0%
! AATTAGTGAGGAAAGAAATA+GGG - chr5_3:16781147-16781166 Msa0802410:five_prime_UTR 25.0%
!! ACTTTTGACTCTCCTATTTA+GGG + chr5_3:16775350-16775369 None:intergenic 30.0%
!!! CTTTTTGTTTTTCTTCTTGG+AGG + chr5_3:16775539-16775558 None:intergenic 30.0%
!! CTTACTTTTCTTCTCTGATT+CGG + chr5_3:16775629-16775648 None:intergenic 30.0%
! GAAGAAAAAGCACAACAAAT+CGG - chr5_3:16775651-16775670 Msa0802410:three_prime_UTR 30.0%
AAATCGGAGGAAAATTACAA+CGG - chr5_3:16775667-16775686 Msa0802410:three_prime_UTR 30.0%
TGAAAACAGCATATGAACAT+GGG + chr5_3:16776448-16776467 None:intergenic 30.0%
!! AGTTTTATATCTCTATACCG+AGG + chr5_3:16776613-16776632 None:intergenic 30.0%
TTCATAACATGCATAATAGC+TGG + chr5_3:16776918-16776937 None:intergenic 30.0%
TAGCAATATTGCATCATGTA+TGG - chr5_3:16777134-16777153 Msa0802410:intron 30.0%
ATCCTTTACTTCTATGAACT+TGG - chr5_3:16777170-16777189 Msa0802410:intron 30.0%
!!! TGAAACATCTAGCTTTTGAT+TGG - chr5_3:16777230-16777249 Msa0802410:CDS 30.0%
!!! GAAACATCTAGCTTTTGATT+GGG - chr5_3:16777231-16777250 Msa0802410:CDS 30.0%
! GAATGAGTTGGAAATTGTTA+AGG - chr5_3:16777313-16777332 Msa0802410:intron 30.0%
AATTTCCCACTCATAATATC+AGG + chr5_3:16777342-16777361 None:intergenic 30.0%
GTAGGAATGAAAATTGGAAA+GGG - chr5_3:16777460-16777479 Msa0802410:intron 30.0%
TAGGAATGAAAATTGGAAAG+GGG - chr5_3:16777461-16777480 Msa0802410:intron 30.0%
AAAATTGGAAAGGGGAAAAT+GGG - chr5_3:16777469-16777488 Msa0802410:intron 30.0%
!!! TTTTTTCTTTCATAGTGGCA+TGG - chr5_3:16777512-16777531 Msa0802410:intron 30.0%
!!! TTTTTTTGTTCGTGGATAAC+TGG - chr5_3:16777643-16777662 Msa0802410:CDS 30.0%
! AAAGCAACCTTTTGTATCAA+GGG + chr5_3:16777702-16777721 None:intergenic 30.0%
! AAAAGCAACCTTTTGTATCA+AGG + chr5_3:16777703-16777722 None:intergenic 30.0%
AATTGTAGAACCCAATTTAC+AGG + chr5_3:16777949-16777968 None:intergenic 30.0%
AAAGTAACATCCTCTCTATT+GGG + chr5_3:16777983-16778002 None:intergenic 30.0%
AAAAGTAACATCCTCTCTAT+TGG + chr5_3:16777984-16778003 None:intergenic 30.0%
ACTGTCTTAAATTTCCAACT+GGG - chr5_3:16778033-16778052 Msa0802410:CDS 30.0%
CATTTGGGTGAATCAATAAA+TGG + chr5_3:16778067-16778086 None:intergenic 30.0%
! CACAGCTACATTTTATCATT+TGG + chr5_3:16778083-16778102 None:intergenic 30.0%
ATACAAACCAACAAAAGGAA+AGG + chr5_3:16778303-16778322 None:intergenic 30.0%
ACAGAATACAAACCAACAAA+AGG + chr5_3:16778308-16778327 None:intergenic 30.0%
ATTCTGTCAGATACAAGTTA+TGG - chr5_3:16778321-16778340 Msa0802410:CDS 30.0%
TACAAGTTATGGTTACATTC+TGG - chr5_3:16778332-16778351 Msa0802410:intron 30.0%
CTGGTTTACTTCCATATTTA+TGG - chr5_3:16778351-16778370 Msa0802410:intron 30.0%
CAATATCCTGGATGAAAAAA+AGG + chr5_3:16778433-16778452 None:intergenic 30.0%
TATTCAAGATCTGGTTGAAA+TGG - chr5_3:16778472-16778491 Msa0802410:intron 30.0%
ATTCAAGATCTGGTTGAAAT+GGG - chr5_3:16778473-16778492 Msa0802410:intron 30.0%
CAAAACAGAATTCTGACATT+CGG + chr5_3:16778541-16778560 None:intergenic 30.0%
TAGCGTATTAGCAAATGTAT+TGG + chr5_3:16778624-16778643 None:intergenic 30.0%
! TACTGAATTTTCTTTGATCC+TGG - chr5_3:16778690-16778709 Msa0802410:intron 30.0%
ACGACTATAAAATAGACATG+TGG + chr5_3:16778727-16778746 None:intergenic 30.0%
! ACAAAAAATGGTAATGCACA+AGG + chr5_3:16778813-16778832 None:intergenic 30.0%
!!! GCATTACCATTTTTTGTTCT+AGG - chr5_3:16778816-16778835 Msa0802410:intron 30.0%
TATGCTCAGAAGAAATTAGA+AGG + chr5_3:16778978-16778997 None:intergenic 30.0%
CAGTGAAACAAAAAATAAGC+TGG + chr5_3:16779028-16779047 None:intergenic 30.0%
! ATACATACTTTTACAGGGTT+GGG + chr5_3:16779144-16779163 None:intergenic 30.0%
TATTTGCATGACATCATGAT+TGG + chr5_3:16779257-16779276 None:intergenic 30.0%
!! ATTTTTCTAGTAAAGCAAGC+AGG + chr5_3:16779315-16779334 None:intergenic 30.0%
GCACTATCATTATTCAAGAA+TGG - chr5_3:16779706-16779725 Msa0802410:intron 30.0%
ATAAAACAGCATACCATCAA+AGG + chr5_3:16779739-16779758 None:intergenic 30.0%
! ACCAGTTCATACATAGTTTT+TGG + chr5_3:16779802-16779821 None:intergenic 30.0%
! TTGTTTTCTCTGCAATACTT+TGG - chr5_3:16779849-16779868 Msa0802410:intron 30.0%
!! GAAATAAGAACAGAAGTATC+TGG + chr5_3:16779970-16779989 None:intergenic 30.0%
! AAGTGGATTTGAATTCATCT+AGG + chr5_3:16780030-16780049 None:intergenic 30.0%
!! ACATAATCTTCTAGAGTTAG+AGG + chr5_3:16780275-16780294 None:intergenic 30.0%
ATTATGTTCATAGAATTGGG+CGG - chr5_3:16780288-16780307 Msa0802410:intron 30.0%
CAAATGTGTGAAGAATGTAT+GGG + chr5_3:16780342-16780361 None:intergenic 30.0%
TCAAATGTGTGAAGAATGTA+TGG + chr5_3:16780343-16780362 None:intergenic 30.0%
TGAATGAATGGGAATATTTC+AGG - chr5_3:16780474-16780493 Msa0802410:intron 30.0%
GAATGAATGGGAATATTTCA+GGG - chr5_3:16780475-16780494 Msa0802410:intron 30.0%
TTCATGGAAAAAATCGAAAC+TGG + chr5_3:16780625-16780644 None:intergenic 30.0%
! TGATGATGAAGACTAAATAC+TGG - chr5_3:16780788-16780807 Msa0802410:CDS 30.0%
GTTGGATGAATATTTGAAAG+TGG - chr5_3:16780830-16780849 Msa0802410:CDS 30.0%
GATACATGGTACAACAAAAA+TGG + chr5_3:16780942-16780961 None:intergenic 30.0%
TTTCATCTAAACAAAGGACA+AGG + chr5_3:16781124-16781143 None:intergenic 30.0%
GAATTAGTGAGGAAAGAAAT+AGG - chr5_3:16781146-16781165 Msa0802410:five_prime_UTR 30.0%
AAAGAAATAGGGTGAAATGT+AGG - chr5_3:16781158-16781177 Msa0802410:five_prime_UTR 30.0%
TCCTATTTAGGGATAGTAGT+GGG + chr5_3:16775339-16775358 None:intergenic 35.0%
!! GACTTTTGACTCTCCTATTT+AGG + chr5_3:16775351-16775370 None:intergenic 35.0%
! TTGTTGTTAAGGGTTTGTTC+TGG + chr5_3:16775502-16775521 None:intergenic 35.0%
! GAGTTCTGTGTTGTTGTTAA+GGG + chr5_3:16775512-16775531 None:intergenic 35.0%
! TGAGTTCTGTGTTGTTGTTA+AGG + chr5_3:16775513-16775532 None:intergenic 35.0%
! CCGTTTTCGTGTTTTCTTTT+GGG + chr5_3:16775583-16775602 None:intergenic 35.0%
CCCAAAAGAAAACACGAAAA+CGG - chr5_3:16775580-16775599 Msa0802410:three_prime_UTR 35.0%
! AATGTGCTTGAGTGTTGTAA+GGG - chr5_3:16775802-16775821 Msa0802410:intron 35.0%
TCGTGATTTGATTGGAATTG+CGG - chr5_3:16775879-16775898 Msa0802410:intron 35.0%
GTATTAGGGTCTGTTTGAAT+TGG - chr5_3:16776051-16776070 Msa0802410:intron 35.0%
CTGAAAACAGCATATGAACA+TGG + chr5_3:16776449-16776468 None:intergenic 35.0%
AAGATATCCTTGAGAGCTTA+TGG + chr5_3:16776479-16776498 None:intergenic 35.0%
! TTTTACACTCTCACAACAGT+TGG + chr5_3:16776719-16776738 None:intergenic 35.0%
AACTTGTACAATCCTAAGTG+TGG - chr5_3:16776838-16776857 Msa0802410:CDS 35.0%
!! GCTTTTGATTGGGAAGAAAA+TGG - chr5_3:16777241-16777260 Msa0802410:CDS 35.0%
!! TTAATTTTGGTCTGCTTCGT+AGG - chr5_3:16777442-16777461 Msa0802410:intron 35.0%
TGCTTCGTAGGAATGAAAAT+TGG - chr5_3:16777454-16777473 Msa0802410:intron 35.0%
CGTAGGAATGAAAATTGGAA+AGG - chr5_3:16777459-16777478 Msa0802410:intron 35.0%
GAAAATTGGAAAGGGGAAAA+TGG - chr5_3:16777468-16777487 Msa0802410:intron 35.0%
!! ACCTGTTTCTATCTTGACAA+TGG - chr5_3:16777581-16777600 Msa0802410:intron 35.0%
!! CCTGTTTCTATCTTGACAAT+GGG - chr5_3:16777582-16777601 Msa0802410:intron 35.0%
AGATTTAAGTGACCAATAGC+AGG + chr5_3:16777789-16777808 None:intergenic 35.0%
GGTTATAACATTCCATTGGA+GGG + chr5_3:16777870-16777889 None:intergenic 35.0%
TGGTTATAACATTCCATTGG+AGG + chr5_3:16777871-16777890 None:intergenic 35.0%
GACTGTCTTAAATTTCCAAC+TGG - chr5_3:16778032-16778051 Msa0802410:CDS 35.0%
! GTGGAATCAGTTTGTTTGTA+TGG - chr5_3:16778213-16778232 Msa0802410:intron 35.0%
! GAATCAGTTTGTTTGTATGG+TGG - chr5_3:16778216-16778235 Msa0802410:intron 35.0%
! AGTGATTTGTGGTTGTTTGT+TGG + chr5_3:16778244-16778263 None:intergenic 35.0%
!! GATTTTAGTGCAGTGATTTG+TGG + chr5_3:16778255-16778274 None:intergenic 35.0%
CAAATCACTGCACTAAAATC+TGG - chr5_3:16778255-16778274 Msa0802410:CDS 35.0%
! AGTTCTTCCTTTCCTTTTGT+TGG - chr5_3:16778293-16778312 Msa0802410:CDS 35.0%
!!! TTCCTTCCTTTTTTTCATCC+AGG - chr5_3:16778424-16778443 Msa0802410:intron 35.0%
ATCCTGGATGAAAAAAAGGA+AGG + chr5_3:16778429-16778448 None:intergenic 35.0%
TTCATCCAGGATATTGTCAT+TGG - chr5_3:16778437-16778456 Msa0802410:intron 35.0%
CCACAAAAGATACTTCTTGT+AGG + chr5_3:16778508-16778527 None:intergenic 35.0%
!!! CCTACAAGAAGTATCTTTTG+TGG - chr5_3:16778505-16778524 Msa0802410:intron 35.0%
!! ATTTTATTTGGTTGGCTCAC+TGG - chr5_3:16778591-16778610 Msa0802410:intron 35.0%
!! TTTTATTTGGTTGGCTCACT+GGG - chr5_3:16778592-16778611 Msa0802410:intron 35.0%
TCGTTATACGTGTTATAAGC+AGG + chr5_3:16778789-16778808 None:intergenic 35.0%
CAAGGACCTAGAACAAAAAA+TGG + chr5_3:16778825-16778844 None:intergenic 35.0%
CTCAGAAGAAATTAGAAGGA+AGG + chr5_3:16778974-16778993 None:intergenic 35.0%
! ATTTTCAACAGCTCGTCAAA+TGG - chr5_3:16779059-16779078 Msa0802410:intron 35.0%
TCACTTAGCTCAGGAATTTA+TGG - chr5_3:16779116-16779135 Msa0802410:intron 35.0%
! GATACATACTTTTACAGGGT+TGG + chr5_3:16779145-16779164 None:intergenic 35.0%
TGATGTCATGCAAATAGTTG+AGG - chr5_3:16779261-16779280 Msa0802410:intron 35.0%
CATGCAAATAGTTGAGGTAT+TGG - chr5_3:16779267-16779286 Msa0802410:intron 35.0%
!!! AGGCATACTTTTGAGATTTG+TGG + chr5_3:16779339-16779358 None:intergenic 35.0%
ATGAACACAGAATCAAAGGT+AGG + chr5_3:16779359-16779378 None:intergenic 35.0%
CTGAATGAACACAGAATCAA+AGG + chr5_3:16779363-16779382 None:intergenic 35.0%
! CATTCAGTTGCCTCTTTTTA+CGG - chr5_3:16779376-16779395 Msa0802410:intron 35.0%
AAGTTGACAACCGTAAAAAG+AGG + chr5_3:16779389-16779408 None:intergenic 35.0%
TGGAGAAAATGCTTCAACAA+GGG - chr5_3:16779489-16779508 Msa0802410:intron 35.0%
! ATCAGCAATAACTTGTAACC+AGG + chr5_3:16779587-16779606 None:intergenic 35.0%
TAAATAATGTCTTCAGGGGT+TGG - chr5_3:16779635-16779654 Msa0802410:intron 35.0%
!!! TACATAGTTTTTGGCTTCCA+GGG + chr5_3:16779793-16779812 None:intergenic 35.0%
!!! ATACATAGTTTTTGGCTTCC+AGG + chr5_3:16779794-16779813 None:intergenic 35.0%
GCCAAAAACTATGTATGAAC+TGG - chr5_3:16779798-16779817 Msa0802410:intron 35.0%
CTATAACTTCAAAAGGGAGA+AGG + chr5_3:16779992-16780011 None:intergenic 35.0%
!!! ATCCACTTTTTTATTCCCCT+TGG - chr5_3:16780042-16780061 Msa0802410:intron 35.0%
! ATTGTTTGTTAAGGACCAAG+GGG + chr5_3:16780060-16780079 None:intergenic 35.0%
! CATTGTTTGTTAAGGACCAA+GGG + chr5_3:16780061-16780080 None:intergenic 35.0%
! AGTCTGTCCATTGTTTGTTA+AGG + chr5_3:16780069-16780088 None:intergenic 35.0%
AAAGTGACAATGACAATGAG+TGG + chr5_3:16780145-16780164 None:intergenic 35.0%
TTGATCACTACTTCAACATC+TGG + chr5_3:16780242-16780261 None:intergenic 35.0%
TCCTCTCTCATATGAATGAA+TGG - chr5_3:16780462-16780481 Msa0802410:intron 35.0%
CCTCTCTCATATGAATGAAT+GGG - chr5_3:16780463-16780482 Msa0802410:intron 35.0%
CCAAATTTCAAAAGATCGTC+TGG + chr5_3:16780550-16780569 None:intergenic 35.0%
!!! CCAGACGATCTTTTGAAATT+TGG - chr5_3:16780547-16780566 Msa0802410:intron 35.0%
TGGCACACATGTTAAGAAAA+AGG - chr5_3:16780567-16780586 Msa0802410:intron 35.0%
AGTTCATCTTAGTAGCTTCA+TGG + chr5_3:16780641-16780660 None:intergenic 35.0%
ATATAGGAGTCCAAGCTTTA+TGG - chr5_3:16780702-16780721 Msa0802410:CDS 35.0%
! TATAGGAGTCCAAGCTTTAT+GGG - chr5_3:16780703-16780722 Msa0802410:CDS 35.0%
TCCCACTACTATCCCTAAAT+AGG - chr5_3:16775335-16775354 Msa0802410:three_prime_UTR 40.0%
CTCCTATTTAGGGATAGTAG+TGG + chr5_3:16775340-16775359 None:intergenic 40.0%
CCATTGTAGGAAAATGGTGA+TGG + chr5_3:16775447-16775466 None:intergenic 40.0%
! CCATCACCATTTTCCTACAA+TGG - chr5_3:16775444-16775463 Msa0802410:three_prime_UTR 40.0%
!! TTCTGGTTCGGTGGATAAAA+CGG + chr5_3:16775485-16775504 None:intergenic 40.0%
! GTTAAGGGTTTGTTCTGGTT+CGG + chr5_3:16775497-16775516 None:intergenic 40.0%
!! GCCGTTTTCGTGTTTTCTTT+TGG + chr5_3:16775584-16775603 None:intergenic 40.0%
! GAAAAAGCACAACAAATCGG+AGG - chr5_3:16775654-16775673 Msa0802410:three_prime_UTR 40.0%
TTCTTTCCAGTCACCACAAT+CGG + chr5_3:16775724-16775743 None:intergenic 40.0%
TGAAGAGGTTTGAGGATTCA+GGG - chr5_3:16775770-16775789 Msa0802410:CDS 40.0%
! GAATGTGCTTGAGTGTTGTA+AGG - chr5_3:16775801-16775820 Msa0802410:intron 40.0%
TCACGACCATCCAACAAAAA+CGG + chr5_3:16775865-16775884 None:intergenic 40.0%
TTGGATGGTCGTGATTTGAT+TGG - chr5_3:16775871-16775890 Msa0802410:intron 40.0%
!! GTCAGGTTAGTTTGGTACTT+TGG - chr5_3:16775909-16775928 Msa0802410:intron 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr5_3:16776099-16776118 Msa0802410:intron 40.0%
CCAAACAGGGCTATATCATA+TGG + chr5_3:16776183-16776202 None:intergenic 40.0%
CCATATGATATAGCCCTGTT+TGG - chr5_3:16776180-16776199 Msa0802410:CDS 40.0%
CATATGAACATGGGCCTATT+TGG + chr5_3:16776439-16776458 None:intergenic 40.0%
CTTATGTCCATAAGCTCTCA+AGG - chr5_3:16776469-16776488 Msa0802410:intron 40.0%
TGTTTATCCAAATAGGGCCT+CGG - chr5_3:16776593-16776612 Msa0802410:intron 40.0%
TATGAATAAGCGGAAGAGCA+AGG - chr5_3:16776932-16776951 Msa0802410:intron 40.0%
ATGAATAAGCGGAAGAGCAA+GGG - chr5_3:16776933-16776952 Msa0802410:intron 40.0%
GGCCAAGTTCATAGAAGTAA+AGG + chr5_3:16777175-16777194 None:intergenic 40.0%
! ATGAACTTGGCCTTTCTCTT+TGG - chr5_3:16777183-16777202 Msa0802410:CDS 40.0%
TGATTGGGAAGAAAATGGCA+AGG - chr5_3:16777246-16777265 Msa0802410:CDS 40.0%
GATTGGGAAGAAAATGGCAA+GGG - chr5_3:16777247-16777266 Msa0802410:CDS 40.0%
TGATTGGGAAACAAACGACA+CGG - chr5_3:16777290-16777309 Msa0802410:intron 40.0%
AGGGATCCTGATATTATGAG+TGG - chr5_3:16777333-16777352 Msa0802410:intron 40.0%
GGGATCCTGATATTATGAGT+GGG - chr5_3:16777334-16777353 Msa0802410:intron 40.0%
CCCATTGTCAAGATAGAAAC+AGG + chr5_3:16777585-16777604 None:intergenic 40.0%
TAGCCTTCCCTTGATACAAA+AGG - chr5_3:16777692-16777711 Msa0802410:intron 40.0%
! CAACCTTTTGTATCAAGGGA+AGG + chr5_3:16777698-16777717 None:intergenic 40.0%
GCGAGCACAAGTATGATAAA+AGG + chr5_3:16777765-16777784 None:intergenic 40.0%
AACATCCTCTCTATTGGGTT+GGG + chr5_3:16777978-16777997 None:intergenic 40.0%
TAACATCCTCTCTATTGGGT+TGG + chr5_3:16777979-16777998 None:intergenic 40.0%
AAATGGATCTAGTACCCAGT+TGG + chr5_3:16778050-16778069 None:intergenic 40.0%
TCAGATGTATTGTGTGATGC+TGG - chr5_3:16778177-16778196 Msa0802410:intron 40.0%
TGTGATGCTGGTAAATCTTG+TGG - chr5_3:16778189-16778208 Msa0802410:intron 40.0%
GAGTTCCAATGACAATATCC+TGG + chr5_3:16778445-16778464 None:intergenic 40.0%
GATATTGTCATTGGAACTCC+CGG - chr5_3:16778446-16778465 Msa0802410:intron 40.0%
AACCAGATCTTGAATACGAC+CGG + chr5_3:16778468-16778487 None:intergenic 40.0%
ACGCTAGTGTTGCAATATAC+TGG - chr5_3:16778638-16778657 Msa0802410:intron 40.0%
CAAATAGTCCGCTCTATACT+TGG - chr5_3:16778880-16778899 Msa0802410:intron 40.0%
ATGTCTGACCAAGTATAGAG+CGG + chr5_3:16778891-16778910 None:intergenic 40.0%
ATACTTGGTCAGACATGTTC+TGG - chr5_3:16778895-16778914 Msa0802410:intron 40.0%
TGGTTATGTTCAGTGCTACA+TGG - chr5_3:16779079-16779098 Msa0802410:intron 40.0%
GCTAAGTGATGAACTGCTAA+CGG + chr5_3:16779105-16779124 None:intergenic 40.0%
AACTTGTGACAGGTTGTTGT+AGG - chr5_3:16779214-16779233 Msa0802410:intron 40.0%
CTTTCTCAGGAATCGAGTAT+TGG - chr5_3:16779433-16779452 Msa0802410:intron 40.0%
TGTACAAATGGGAAACCACA+CGG - chr5_3:16779465-16779484 Msa0802410:intron 40.0%
GTGGAGAAAATGCTTCAACA+AGG - chr5_3:16779488-16779507 Msa0802410:intron 40.0%
!! ATATACCTGGTGAAAGTACC+TGG - chr5_3:16779566-16779585 Msa0802410:CDS 40.0%
TGGAAAGCAGTGTCTATAAG+TGG - chr5_3:16779655-16779674 Msa0802410:intron 40.0%
GACCAAGGGGAATAAAAAAG+TGG + chr5_3:16780047-16780066 None:intergenic 40.0%
! CCATTGTTTGTTAAGGACCA+AGG + chr5_3:16780062-16780081 None:intergenic 40.0%
CCTTGGTCCTTAACAAACAA+TGG - chr5_3:16780059-16780078 Msa0802410:intron 40.0%
TGGACAGACTAGTGACTATT+AGG - chr5_3:16780079-16780098 Msa0802410:intron 40.0%
CCCATTCATTCATATGAGAG+AGG + chr5_3:16780466-16780485 None:intergenic 40.0%
! GAATATTTCAGGGACTTGCT+GGG - chr5_3:16780485-16780504 Msa0802410:intron 40.0%
!! AATATTTCAGGGACTTGCTG+GGG - chr5_3:16780486-16780505 Msa0802410:intron 40.0%
! ATAGGAGTCCAAGCTTTATG+GGG - chr5_3:16780704-16780723 Msa0802410:CDS 40.0%
!! TTAGACTTTGGAGCATCAAC+AGG + chr5_3:16780747-16780766 None:intergenic 40.0%
!! ACCATGTATCGGCTTGTAAT+TGG - chr5_3:16780952-16780971 Msa0802410:CDS 40.0%
!! CCATGTATCGGCTTGTAATT+GGG - chr5_3:16780953-16780972 Msa0802410:CDS 40.0%
TGCGAGCCATTGTAGGAAAA+TGG + chr5_3:16775453-16775472 None:intergenic 45.0%
!! TCGTTTTTGCGAGCCATTGT+AGG + chr5_3:16775460-16775479 None:intergenic 45.0%
!!! TTCGGCGTCGTTTTGAAGAT+TGG + chr5_3:16775611-16775630 None:intergenic 45.0%
TCGGAGGAAAATTACAACGG+CGG - chr5_3:16775670-16775689 Msa0802410:three_prime_UTR 45.0%
TGCCGGAGATGAGAAATACA+CGG - chr5_3:16775744-16775763 Msa0802410:CDS 45.0%
GTGAAGAGGTTTGAGGATTC+AGG - chr5_3:16775769-16775788 Msa0802410:CDS 45.0%
CAACACTCAAGCACATTCTC+AGG + chr5_3:16775799-16775818 None:intergenic 45.0%
TTGATTGGAATTGCGGCAAC+TGG - chr5_3:16775886-16775905 Msa0802410:intron 45.0%
TGATTGGAATTGCGGCAACT+GGG - chr5_3:16775887-16775906 Msa0802410:intron 45.0%
GAACATGGGCCTATTTGGAT+TGG + chr5_3:16776434-16776453 None:intergenic 45.0%
! CTAGGGAAGACACTTGCTTT+TGG - chr5_3:16776888-16776907 Msa0802410:intron 45.0%
AAGAGCAAGGGTTCTTCCAA+GGG - chr5_3:16776945-16776964 Msa0802410:intron 45.0%
GAAAATGGCAAGGGAATGAG+TGG - chr5_3:16777256-16777275 Msa0802410:CDS 45.0%
GATTGGGAAACAAACGACAC+GGG - chr5_3:16777291-16777310 Msa0802410:intron 45.0%
AGTTATACCTCTCCCTCCAA+TGG - chr5_3:16777855-16777874 Msa0802410:intron 45.0%
TAACATTCCATTGGAGGGAG+AGG + chr5_3:16777865-16777884 None:intergenic 45.0%
TGCTGGTAAATCTTGTGGTG+TGG - chr5_3:16778194-16778213 Msa0802410:intron 45.0%
ACCAGATCTTGAATACGACC+GGG + chr5_3:16778467-16778486 None:intergenic 45.0%
AGGTCCTTGATGAAGCAGAT+CGG - chr5_3:16778836-16778855 Msa0802410:intron 45.0%
AGCAGTTCATCACTTAGCTC+AGG - chr5_3:16779107-16779126 Msa0802410:intron 45.0%
GTACAAATGGGAAACCACAC+GGG - chr5_3:16779466-16779485 Msa0802410:intron 45.0%
TGTAACCAGGTACTTTCACC+AGG + chr5_3:16779574-16779593 None:intergenic 45.0%
GAATGGAAGCTGTCCTTTGA+TGG - chr5_3:16779723-16779742 Msa0802410:intron 45.0%
!! ATCATATCAGTTTGCTGCCC+TGG - chr5_3:16779773-16779792 Msa0802410:intron 45.0%
CTGCAATACTTTGGCCATGT+TGG - chr5_3:16779858-16779877 Msa0802410:intron 45.0%
GGAATATTTCAGGGACTTGC+TGG - chr5_3:16780484-16780503 Msa0802410:intron 45.0%
!!! GTGAACGTTTTGAGAGAAGC+AGG - chr5_3:16780514-16780533 Msa0802410:intron 45.0%
CCCAATTACAAGCCGATACA+TGG + chr5_3:16780956-16780975 None:intergenic 45.0%
!! ATAAAACTAATAAATAAAAT+AGG + chr5_3:16777074-16777093 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTAAACAA+AGG - chr5_3:16777418-16777437 Msa0802410:CDS 5.0%
!!! TTTTTTTTTTTTTAAACAAA+GGG - chr5_3:16777419-16777438 Msa0802410:CDS 5.0%
!! TATTATATTATCAAAAAAAA+TGG + chr5_3:16779544-16779563 None:intergenic 5.0%
!! AAGGGTTTGTTCTGGTTCGG+TGG + chr5_3:16775494-16775513 None:intergenic 50.0%
TTACAACGGCGGTGATGTGT+TGG - chr5_3:16775681-16775700 Msa0802410:three_prime_UTR 50.0%
!! TGATGTGTTGGTTTCGGCCT+CGG - chr5_3:16775693-16775712 Msa0802410:three_prime_UTR 50.0%
GATGAACCGATTGTGGTGAC+TGG - chr5_3:16775715-16775734 Msa0802410:exon 50.0%
GTGGTGACTGGAAAGAATGC+CGG - chr5_3:16775727-16775746 Msa0802410:CDS 50.0%
CGCCGTGTATTTCTCATCTC+CGG + chr5_3:16775749-16775768 None:intergenic 50.0%
CGGAGATGAGAAATACACGG+CGG - chr5_3:16775747-16775766 Msa0802410:CDS 50.0%
AGAAATACACGGCGGTGAAG+AGG - chr5_3:16775755-16775774 Msa0802410:CDS 50.0%
GCACGTGATTGAATCGGAGA+AGG + chr5_3:16775838-16775857 None:intergenic 50.0%
CTCCGATTCAATCACGTGCT+TGG - chr5_3:16775839-16775858 Msa0802410:intron 50.0%
GGCCAAGCACGTGATTGAAT+CGG + chr5_3:16775844-16775863 None:intergenic 50.0%
!!! ACGTGCTTGGCCGTTTTTGT+TGG - chr5_3:16775852-16775871 Msa0802410:intron 50.0%
!!! GCTTGGCCGTTTTTGTTGGA+TGG - chr5_3:16775856-16775875 Msa0802410:intron 50.0%
! GCAACTGGGTCAGGTTAGTT+TGG - chr5_3:16775901-16775920 Msa0802410:intron 50.0%
CTCTATACCGAGGCCCTATT+TGG + chr5_3:16776603-16776622 None:intergenic 50.0%
GAAGAGCAAGGGTTCTTCCA+AGG - chr5_3:16776944-16776963 Msa0802410:intron 50.0%
! GGAGAGAGCATAAGGCAAAG+AGG + chr5_3:16776978-16776997 None:intergenic 50.0%
CCTTATGCTCTCTCCTACGA+GGG - chr5_3:16776983-16777002 Msa0802410:intron 50.0%
CAAACGACACGGGAATGAGT+TGG - chr5_3:16777301-16777320 Msa0802410:intron 50.0%
ACTCTCCCAACCCAATAGAG+AGG - chr5_3:16777970-16777989 Msa0802410:intron 50.0%
TCCCGGTCGTATTCAAGATC+TGG - chr5_3:16778463-16778482 Msa0802410:intron 50.0%
CATGTGGCAACTGTCTATCC+AGG + chr5_3:16778711-16778730 None:intergenic 50.0%
GCATCCGATCTGCTTCATCA+AGG + chr5_3:16778843-16778862 None:intergenic 50.0%
AGCAGATCGGATGCTTGACA+TGG - chr5_3:16778849-16778868 Msa0802410:intron 50.0%
GCAGATCGGATGCTTGACAT+GGG - chr5_3:16778850-16778869 Msa0802410:intron 50.0%
ACAGGTTGTTGTAGGCTCAG+AGG - chr5_3:16779222-16779241 Msa0802410:intron 50.0%
! AAGCATTTTCTCCACCCGTG+TGG + chr5_3:16779483-16779502 None:intergenic 50.0%
ATCACAGCATGAGCGCACAA+AGG - chr5_3:16779684-16779703 Msa0802410:intron 50.0%
TGGGCAGATTGCTACTGATG+TGG - chr5_3:16780196-16780215 Msa0802410:intron 50.0%
GTTCATAGAATTGGGCGGAC+TGG - chr5_3:16780293-16780312 Msa0802410:intron 50.0%
GAAGTGAGCCCCATAAAGCT+TGG + chr5_3:16780715-16780734 None:intergenic 50.0%
GCTTTATGGGGCTCACTTCA+AGG - chr5_3:16780716-16780735 Msa0802410:CDS 50.0%
GAGGCGAAAAGCTGAAGAGG+TGG + chr5_3:16775404-16775423 None:intergenic 55.0%
CCAGAGGCGAAAAGCTGAAG+AGG + chr5_3:16775407-16775426 None:intergenic 55.0%
! CCTCTTCAGCTTTTCGCCTC+TGG - chr5_3:16775404-16775423 Msa0802410:three_prime_UTR 55.0%
AGTGAAGCAGCTCGAACCAG+AGG + chr5_3:16775423-16775442 None:intergenic 55.0%
!! CGGCGGTGATGTGTTGGTTT+CGG - chr5_3:16775687-16775706 Msa0802410:three_prime_UTR 55.0%
! CACCACAATCGGTTCATCCG+AGG + chr5_3:16775713-16775732 None:intergenic 55.0%
GCAAGGGTTCTTCCAAGGGT+CGG - chr5_3:16776949-16776968 Msa0802410:intron 55.0%
GCAAAGAGGATTCCGACCCT+TGG + chr5_3:16776964-16776983 None:intergenic 55.0%
GCCTTATGCTCTCTCCTACG+AGG - chr5_3:16776982-16777001 Msa0802410:intron 55.0%
! CCCTCGTAGGAGAGAGCATA+AGG + chr5_3:16776986-16777005 None:intergenic 55.0%
TGTTGAGCTAGCTCCCTCGT+AGG + chr5_3:16776999-16777018 None:intergenic 55.0%
CAAATGGGAAACCACACGGG+TGG - chr5_3:16779469-16779488 Msa0802410:intron 55.0%
TGATGTGGCTGCACGAGGAT+TGG - chr5_3:16780211-16780230 Msa0802410:intron 55.0%
GGCCTCGGATGAACCGATTG+TGG - chr5_3:16775708-16775727 Msa0802410:exon 60.0%
CACGGCGGTGAAGAGGTTTG+AGG - chr5_3:16775762-16775781 Msa0802410:CDS 60.0%
GGAATTGCGGCAACTGGGTC+AGG - chr5_3:16775892-16775911 Msa0802410:intron 60.0%
CTTGTGCTCGCGCCTGCTAT+TGG - chr5_3:16777774-16777793 Msa0802410:intron 60.0%
GCTACTGATGTGGCTGCACG+AGG - chr5_3:16780206-16780225 Msa0802410:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 16775325 16781196 16775325 ID=Msa0802410;Name=Msa0802410
chr5_3 mRNA 16775325 16781196 16775325 ID=Msa0802410-mRNA-1;Parent=Msa0802410;Name=Msa0802410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=138|1|1|1|1|1|12|393|524
chr5_3 exon 16775325 16775813 16775325 ID=Msa0802410-mRNA-1:exon:6999;Parent=Msa0802410-mRNA-1
chr5_3 exon 16775933 16776025 16775933 ID=Msa0802410-mRNA-1:exon:6998;Parent=Msa0802410-mRNA-1
chr5_3 exon 16776154 16776318 16776154 ID=Msa0802410-mRNA-1:exon:6997;Parent=Msa0802410-mRNA-1
chr5_3 exon 16776777 16776870 16776777 ID=Msa0802410-mRNA-1:exon:6996;Parent=Msa0802410-mRNA-1
chr5_3 exon 16777011 16777079 16777011 ID=Msa0802410-mRNA-1:exon:6995;Parent=Msa0802410-mRNA-1
chr5_3 exon 16777171 16777295 16777171 ID=Msa0802410-mRNA-1:exon:6994;Parent=Msa0802410-mRNA-1
chr5_3 exon 16777366 16777451 16777366 ID=Msa0802410-mRNA-1:exon:6993;Parent=Msa0802410-mRNA-1
chr5_3 exon 16777605 16777683 16777605 ID=Msa0802410-mRNA-1:exon:6992;Parent=Msa0802410-mRNA-1
chr5_3 exon 16777995 16778075 16777995 ID=Msa0802410-mRNA-1:exon:6991;Parent=Msa0802410-mRNA-1
chr5_3 exon 16778240 16778347 16778240 ID=Msa0802410-mRNA-1:exon:6990;Parent=Msa0802410-mRNA-1
chr5_3 exon 16779502 16779629 16779502 ID=Msa0802410-mRNA-1:exon:6989;Parent=Msa0802410-mRNA-1
chr5_3 exon 16780608 16781196 16780608 ID=Msa0802410-mRNA-1:exon:6988;Parent=Msa0802410-mRNA-1
chr5_3 five_prime_UTR 16781059 16781196 16781059 ID=Msa0802410-mRNA-1:five_prime_utr;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16780608 16781058 16780608 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16779502 16779629 16779502 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16778240 16778347 16778240 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16777995 16778075 16777995 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16777605 16777683 16777605 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16777366 16777451 16777366 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16777171 16777295 16777171 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16777011 16777079 16777011 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16776777 16776870 16776777 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16776154 16776318 16776154 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16775933 16776025 16775933 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 CDS 16775718 16775813 16775718 ID=Msa0802410-mRNA-1:cds;Parent=Msa0802410-mRNA-1
chr5_3 three_prime_UTR 16775325 16775717 16775325 ID=Msa0802410-mRNA-1:three_prime_utr;Parent=Msa0802410-mRNA-1
Gene Sequence

>Msa0802410

ATGGCTCGCAAAAACGACGCCGTTTTATCCACCGAACCAGAACAAACCCTTAACAACAACACAGAACTCAAATCCTCCAAGAAGAAAAACAAAAAGAACAAACACGAAGAAAACACTCCCAAAAGAAAACACGAAAACGGCGAAACCAATCTTCAAAACGACGCCGAATCAGAGAAGAAAAGTAAGAAGAAGAAAAAGCACAACAAATCGGAGGAAAATTACAACGGCGGTGATGTGTTGGTTTCGGCCTCGGATGAACCGATTGTGGTGACTGGAAAGAATGCCGGAGATGAGAAATACACGGCGGTGAAGAGGTTTGAGGATTCAGGGCTACCTGAGAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCAACTGGGTCAGGGAAGACACTTGCTTTTGGAATACCAGCTATTATGCATGTTATGAATAAGCGGAAGAGCAAGGGTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACGAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCAACAAACAACCACAAATCACTGCACTAAAATCTGGCATTGATATTGTCATTGGAACTCCCGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGGGTGGAGAAAATGCTTCAACAAGGGGGTTGGAAAGCAGTGTCTATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATTTGAATAAGGGACTTGCTGGGGAGCTTGTGAACGTTTTGAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGATGAAGACTAA
Protein sequence

>Msa0802410

MARKNDAVLSTEPEQTLNNNTELKSSKKKNKKNKHEENTPKRKHENGETNLQNDAESEKKSKKKKKHNKSEENYNGGDVLVSASDEPIVVTGKNAGDEKYTAVKRFEDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTNKQPQITALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED*