AlfalfaGEDB | Msa0955210

M. sativa cultivar zhongmu-4 / Msa0955210

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955210	XP_013452105.1	99.083	109	1	0	36	144	1	109	2.05e-58	187

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955210	sp\|O03982\|HIP39_ARATH	52.857	70	31	2	39	107	3	71	8.81e-14	67.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955210	A0A072UAJ9	99.083	109	1	0	36	144	1	109	9.79e-59	187

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033880	Msa0955210	0.808648	2.793839e-50	-8.615850e-47
Msa0127850	Msa0955210	0.803144	4.010189e-49	-8.615850e-47
Msa0174000	Msa0955210	0.803446	3.473164e-49	-8.615850e-47
Msa0593700	Msa0955210	0.806327	8.682607e-50	-8.615850e-47
Msa0955210	Msa1083880	0.812880	3.393472e-51	-8.615850e-47
Msa0955210	Msa1114040	0.807855	4.122160e-50	-8.615850e-47
Msa0955210	Msa1256770	0.825778	3.894129e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955210	MtrunA17_Chr6g0471211	99.083	109	1	0	36	144	1	109	1.89e-62	187
Msa0955210	MtrunA17_Chr1g0203261	87.143	70	9	0	38	107	4	73	4.78e-26	94.4
Msa0955210	MtrunA17_Chr8g0387471	50.704	71	34	1	39	109	3	72	3.07e-17	72.8
Msa0955210	MtrunA17_Chr7g0233191	46.250	80	42	1	39	118	3	81	1.14e-15	68.2
Msa0955210	MtrunA17_Chr6g0469651	50.000	70	34	1	38	107	2	70	1.71e-15	68.6
Msa0955210	MtrunA17_Chr7g0233251	50.000	74	36	1	39	112	3	75	4.16e-15	67.0
Msa0955210	MtrunA17_Chr7g0233201	47.368	76	39	1	39	114	3	77	4.26e-15	66.6
Msa0955210	MtrunA17_Chr7g0248671	53.731	67	30	1	39	105	3	68	4.30e-15	68.2
Msa0955210	MtrunA17_Chr7g0233181	47.368	76	39	1	39	114	3	77	1.05e-14	65.5
Msa0955210	MtrunA17_Chr7g0233231	46.053	76	40	1	39	114	3	77	2.61e-14	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955210	AT5G23760.1	86.111	72	10	0	36	107	1	72	1.78e-27	98.6
Msa0955210	AT5G23760.2	83.607	61	10	0	47	107	1	61	5.12e-20	79.3
Msa0955210	AT1G01490.4	44.186	86	46	2	23	107	14	98	2.68e-15	69.7
Msa0955210	AT1G01490.1	52.857	70	31	2	39	107	3	71	8.96e-15	67.8
Msa0955210	AT1G01490.2	52.857	70	31	2	39	107	3	71	8.96e-15	67.8

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Find 21 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGAAGGTTGTGTTAA+AGG	0.218749	6_3:-59000034	Msa0955210:intron
AAAGTGGATATTGTATCTGT+TGG	0.556535	6_3:-58999742	Msa0955210:CDS
AACTCCTCTTCAAATGGCTC+AGG	0.480679	6_3:-59000279	Msa0955210:intron
AATAGGGGTTGATTCGATTG+TGG	0.591286	6_3:-58999845	Msa0955210:intron
ACTGAAGAAAGTAGGAAAAG+TGG	0.459459	6_3:-58999758	Msa0955210:CDS
AGAGAAGAAAGAAGAGAAGA+AGG	0.411074	6_3:-58999647	Msa0955210:CDS
AGGAAAGAAAGAAGAGAAGA+AGG	0.404813	6_3:-58999695	Msa0955210:CDS
CCATTTGAAGAGGAGTTTGA+AGG	0.428358	6_3:+59000285	None:intergenic
CCTTCAAACTCCTCTTCAAA+TGG	0.460700	6_3:-59000285	Msa0955210:CDS
GAAAACAAGAAAGAAAATGA+AGG	0.570844	6_3:+59000313	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGGATATTGTATCTGT+TGG	-	chr6_3:59000074-59000093	Msa0955210:intron	30.0%
AGAGAAAAAAGAGGAGAAAA+AGG	-	chr6_3:59000145-59000164	Msa0955210:intron	30.0%
AAAGTGGATATTGTATCTGT+TGG	-	chr6_3:59000074-59000093	Msa0955210:intron	30.0%
AGAGAAAAAAGAGGAGAAAA+AGG	-	chr6_3:59000145-59000164	Msa0955210:intron	30.0%
GATAGGATAGGATATGAAAG+AGG	+	chr6_3:58999570-58999589	None:intergenic	35.0%
ACATAAGGGATCTAAGAGAT+AGG	+	chr6_3:58999631-58999650	None:intergenic	35.0%
AAAGCAGAAGGTTGTGTTAA+AGG	-	chr6_3:58999782-58999801	Msa0955210:CDS	35.0%
GTGAAGAAACTGAAGAAAGT+AGG	-	chr6_3:59000050-59000069	Msa0955210:intron	35.0%
ACTGAAGAAAGTAGGAAAAG+TGG	-	chr6_3:59000058-59000077	Msa0955210:intron	35.0%
GCAAAAGAAGAGAAGAAAGA+AGG	-	chr6_3:59000101-59000120	Msa0955210:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	58999427	59000411	58999427	ID=Msa0955210;Name=Msa0955210
chr6_3	mRNA	58999427	59000411	58999427	ID=Msa0955210-mRNA-1;Parent=Msa0955210;Name=Msa0955210-mRNA-1;_AED=0.16;_eAED=0.16;_QI=18\|1\|1\|1\|1\|1\|3\|194\|144
chr6_3	exon	58999427	58999862	58999427	ID=Msa0955210-mRNA-1:exon:11661;Parent=Msa0955210-mRNA-1
chr6_3	exon	58999971	59000049	58999971	ID=Msa0955210-mRNA-1:exon:11660;Parent=Msa0955210-mRNA-1
chr6_3	exon	59000280	59000411	59000280	ID=Msa0955210-mRNA-1:exon:11659;Parent=Msa0955210-mRNA-1
chr6_3	five_prime_UTR	59000394	59000411	59000394	ID=Msa0955210-mRNA-1:five_prime_utr;Parent=Msa0955210-mRNA-1
chr6_3	CDS	59000280	59000393	59000280	ID=Msa0955210-mRNA-1:cds;Parent=Msa0955210-mRNA-1
chr6_3	CDS	58999971	59000049	58999971	ID=Msa0955210-mRNA-1:cds;Parent=Msa0955210-mRNA-1
chr6_3	CDS	58999621	58999862	58999621	ID=Msa0955210-mRNA-1:cds;Parent=Msa0955210-mRNA-1
chr6_3	three_prime_UTR	58999427	58999620	58999427	ID=Msa0955210-mRNA-1:three_prime_utr;Parent=Msa0955210-mRNA-1

Gene Sequence

>Msa0955210

ATGTGTCAAAAAAAATATATATATAGGTACTACAAAAGCCTCATCAAAATTCTCTTAGCCTTCATTTTCTTTCTTGTTTTCATACTCCTTCAAACTCCTCTTCAAATGGCTCAGAAGGTTGTGTTAAAGGTGTTAACTATGACAGATGACAAAACCAAGCAAAAAGCTATAGAAGCAGCTGCAGATATCTATGGGGTTGATTCGATTGTGGCAGATGTAAAGGAGCAAAAGTTGACAGTGATTGGTTCAATGGATACAGTGAAAATTGTGAAGAAACTGAAGAAAGTAGGAAAAGTGGATATTGTATCTGTTGGTCCTGCAAAAGAAGAGAAGAAAGAAGGAAAGAAAGAAGAGAAGAAGGAAGAGAAAAAAGAGGAGAAAAAGGAAGAGAAGAAAGAAGAGAAGAAGGAGGAAAAGAAAGAGGAGAAAAAATAA

Protein sequence

>Msa0955210

MCQKKYIYRYYKSLIKILLAFIFFLVFILLQTPLQMAQKVVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGSMDTVKIVKKLKKVGKVDIVSVGPAKEEKKEGKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK*