Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959610 | A0A072THH5 | 97.845 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 1.46e-164 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643020 | Msa0959610 | -0.803870 | 2.835798e-49 | -8.615850e-47 |
| Msa0682730 | Msa0959610 | -0.808885 | 2.486010e-50 | -8.615850e-47 |
| Msa0601920 | Msa0959610 | -0.811067 | 8.426166e-51 | -8.615850e-47 |
| Msa0871310 | Msa0959610 | 0.819321 | 1.235116e-52 | -8.615850e-47 |
| Msa0894500 | Msa0959610 | 0.829334 | 5.455758e-55 | -8.615850e-47 |
| Msa0921080 | Msa0959610 | 0.805967 | 1.033791e-49 | -8.615850e-47 |
| Msa0959610 | Msa0995220 | 0.829024 | 6.487059e-55 | -8.615850e-47 |
| Msa0959610 | Msa1080790 | 0.804118 | 2.517870e-49 | -8.615850e-47 |
| Msa0959610 | Msa1370630 | 0.833113 | 6.425875e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959610 | MtrunA17_Chr6g0477471 | 97.845 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 2.81e-168 | 462 |
| Msa0959610 | MtrunA17_Chr1g0188581 | 72.574 | 237 | 60 | 3 | 1 | 232 | 1 | 237 | 1.08e-126 | 358 |
| Msa0959610 | MtrunA17_Chr1g0147511 | 68.966 | 232 | 72 | 0 | 1 | 232 | 1 | 232 | 5.81e-119 | 338 |
| Msa0959610 | MtrunA17_Chr3g0139261 | 73.636 | 220 | 58 | 0 | 1 | 220 | 1 | 220 | 4.69e-118 | 335 |
| Msa0959610 | MtrunA17_Chr6g0477661 | 59.174 | 218 | 89 | 0 | 1 | 218 | 1 | 218 | 1.19e-94 | 276 |
| Msa0959610 | MtrunA17_Chr6g0477681 | 53.448 | 232 | 105 | 1 | 1 | 232 | 1 | 229 | 1.52e-88 | 261 |
| Msa0959610 | MtrunA17_Chr5g0428761 | 35.398 | 226 | 139 | 2 | 8 | 227 | 6 | 230 | 2.39e-45 | 152 |
| Msa0959610 | MtrunA17_Chr8g0392461 | 36.408 | 206 | 126 | 1 | 8 | 213 | 6 | 206 | 1.57e-36 | 128 |
| Msa0959610 | MtrunA17_Chr7g0244961 | 35.885 | 209 | 131 | 1 | 7 | 215 | 43 | 248 | 6.05e-29 | 109 |
| Msa0959610 | MtrunA17_Chr2g0282971 | 33.333 | 174 | 110 | 5 | 40 | 212 | 1 | 169 | 3.72e-17 | 77.0 |
| Msa0959610 | MtrunA17_Chr8g0392481 | 45.122 | 82 | 45 | 0 | 7 | 88 | 6 | 87 | 7.37e-17 | 73.6 |
| Msa0959610 | MtrunA17_Chr8g0392471 | 31.646 | 158 | 102 | 2 | 56 | 213 | 98 | 249 | 3.21e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959610 | AT4G31330.1 | 60.759 | 237 | 86 | 2 | 1 | 231 | 1 | 236 | 7.29e-102 | 295 |
| Msa0959610 | AT5G10580.3 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 1.83e-96 | 282 |
| Msa0959610 | AT5G10580.1 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 2.50e-96 | 281 |
| Msa0959610 | AT5G10580.4 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 2.50e-96 | 281 |
| Msa0959610 | AT5G10580.2 | 59.459 | 185 | 67 | 1 | 1 | 177 | 1 | 185 | 8.56e-78 | 233 |
| Msa0959610 | AT5G24790.1 | 52.790 | 233 | 104 | 2 | 1 | 227 | 1 | 233 | 1.24e-76 | 231 |
| Msa0959610 | AT5G24600.1 | 33.473 | 239 | 145 | 3 | 4 | 230 | 2 | 238 | 1.92e-39 | 136 |
| Msa0959610 | AT5G24600.2 | 34.529 | 223 | 132 | 3 | 4 | 214 | 2 | 222 | 3.44e-38 | 133 |
| Msa0959610 | AT3G18215.1 | 34.597 | 211 | 138 | 0 | 3 | 213 | 2 | 212 | 2.59e-37 | 131 |
| Msa0959610 | AT5G43180.1 | 32.727 | 220 | 133 | 3 | 9 | 213 | 8 | 227 | 3.91e-30 | 112 |
| Msa0959610 | AT5G46060.1 | 32.701 | 211 | 138 | 2 | 4 | 213 | 6 | 213 | 2.60e-17 | 78.6 |
| Msa0959610 | AT3G18215.2 | 32.143 | 140 | 95 | 0 | 74 | 213 | 1 | 140 | 5.21e-17 | 76.3 |
Find 47 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTCATGCTAGACGATTT+TGG | 0.136780 | 6_3:+76702686 | Msa0959610:CDS |
| TGGTGCTCACGGCGAATTTA+TGG | 0.191493 | 6_3:+76705099 | Msa0959610:CDS |
| GGAATGGAAGACATATTATT+TGG | 0.196486 | 6_3:+76702561 | Msa0959610:CDS |
| ATTCCAATTGTAGTTGAAAA+AGG | 0.214511 | 6_3:-76702661 | None:intergenic |
| TGCATATAAGGAGGCTTAAT+TGG | 0.271691 | 6_3:-76705201 | None:intergenic |
| AAGTCTTCGAAACCTTATAA+TGG | 0.287193 | 6_3:+76704973 | Msa0959610:CDS |
| AAAATCACATTCAAATAATC+AGG | 0.291282 | 6_3:-76705253 | None:intergenic |
| CATCTTGTGGTGTGCATATA+AGG | 0.308122 | 6_3:-76705213 | None:intergenic |
| CTTTGAACACTGTGGGGAAT+AGG | 0.316144 | 6_3:+76705290 | Msa0959610:CDS |
| TTAGGGTTTCTGATGACTAT+TGG | 0.325997 | 6_3:+76702601 | Msa0959610:CDS |
| TCTGCCACAGTCTTTCAATT+AGG | 0.330602 | 6_3:+76705170 | Msa0959610:CDS |
| GATATGATGCTTGTACCATT+AGG | 0.338920 | 6_3:+76702583 | Msa0959610:CDS |
| CCTCTTGACGACGTTCTCTA+TGG | 0.352963 | 6_3:+76705079 | Msa0959610:CDS |
| ATATGATGCTTGTACCATTA+GGG | 0.359675 | 6_3:+76702584 | Msa0959610:CDS |
| TATAATGGGATCGACACTTA+TGG | 0.380623 | 6_3:+76704988 | Msa0959610:CDS |
| CTTGACATTGTTTGTGGGAG+TGG | 0.388423 | 6_3:+76705406 | Msa0959610:CDS |
| TAAGTGTCGATCCCATTATA+AGG | 0.397897 | 6_3:-76704985 | None:intergenic |
| TTGGATATTTGGTCCAGTCT+TGG | 0.409834 | 6_3:+76705342 | Msa0959610:CDS |
| AGTCTTCGAAACCTTATAAT+GGG | 0.413024 | 6_3:+76704974 | Msa0959610:CDS |
| CCAAATATCCAAAGCAAAAG+TGG | 0.434862 | 6_3:-76705331 | None:intergenic |
| TGACTATTGGTTATCATGTA+TGG | 0.440284 | 6_3:+76702614 | Msa0959610:CDS |
| ACCACAAGATGCAATTTCCT+TGG | 0.462181 | 6_3:+76705225 | Msa0959610:CDS |
| TTGGGTTCCTACCATGTTGA+AGG | 0.462529 | 6_3:+76702705 | Msa0959610:CDS |
| TACAACCTTGACATTGTTTG+TGG | 0.466707 | 6_3:+76705400 | Msa0959610:CDS |
| ATAACAACAAAGAGTAAGAA+AGG | 0.478758 | 6_3:+76702509 | None:intergenic |
| ACATCAATTCTCTTATCAGC+TGG | 0.497240 | 6_3:+76705016 | Msa0959610:CDS |
| ACAACCTTGACATTGTTTGT+GGG | 0.513934 | 6_3:+76705401 | Msa0959610:CDS |
| GAGCACAATAAAACCAAGAC+TGG | 0.525087 | 6_3:-76705355 | None:intergenic |
| ATAGTCATCAGAAACCCTAA+TGG | 0.529052 | 6_3:-76702598 | None:intergenic |
| AAATCACATTCAAATAATCA+GGG | 0.535411 | 6_3:-76705252 | None:intergenic |
| GGAACTACTTTGAACACTGT+GGG | 0.559223 | 6_3:+76705283 | Msa0959610:CDS |
| ACCAAGGAAATTGCATCTTG+TGG | 0.590983 | 6_3:-76705226 | None:intergenic |
| TATGGTTGTGGCAAAAGACT+CGG | 0.591323 | 6_3:+76702632 | Msa0959610:CDS |
| CCATAGAGAACGTCGTCAAG+AGG | 0.594122 | 6_3:-76705079 | None:intergenic |
| CACTCCCACAAACAATGTCA+AGG | 0.598937 | 6_3:-76705405 | None:intergenic |
| TCAATTACCTTCAACATGGT+AGG | 0.612368 | 6_3:-76702712 | None:intergenic |
| TTGGTTATCATGTATGGTTG+TGG | 0.618901 | 6_3:+76702620 | Msa0959610:CDS |
| ATAAGTACTGCTTATGATAG+CGG | 0.623565 | 6_3:-76705044 | None:intergenic |
| TGATAAGAGAATTGATGTAG+TGG | 0.631774 | 6_3:-76705011 | None:intergenic |
| GACGTTCTCTATGGTGCTCA+CGG | 0.634507 | 6_3:+76705088 | Msa0959610:CDS |
| CAAATAATCAGGGGTCACCA+AGG | 0.644463 | 6_3:-76705242 | None:intergenic |
| GAAACCTAATTGAAAGACTG+TGG | 0.655096 | 6_3:-76705174 | None:intergenic |
| CTTGTGGTGTGCATATAAGG+AGG | 0.657405 | 6_3:-76705210 | None:intergenic |
| AATCACATTCAAATAATCAG+GGG | 0.662315 | 6_3:-76705251 | None:intergenic |
| AGGAACTACTTTGAACACTG+TGG | 0.685779 | 6_3:+76705282 | Msa0959610:CDS |
| GAACTACTTTGAACACTGTG+GGG | 0.711042 | 6_3:+76705284 | Msa0959610:CDS |
| GTATTCAATTACCTTCAACA+TGG | 0.711102 | 6_3:-76702716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACTATAATATTTAATAAT+TGG | - | chr6_3:76702933-76702952 | None:intergenic | 10.0% |
| !!! | TAAGTTTATATTGTTTTATT+TGG | + | chr6_3:76703608-76703627 | Msa0959610:intron | 10.0% |
| !!! | AAATTTGAAATATGAAAAAT+AGG | + | chr6_3:76703682-76703701 | Msa0959610:intron | 10.0% |
| !!! | AATTTGAAATATGAAAAATA+GGG | + | chr6_3:76703683-76703702 | Msa0959610:intron | 10.0% |
| !!! | CTTTAAAATAAAAAAGAAAA+AGG | + | chr6_3:76704408-76704427 | Msa0959610:intron | 10.0% |
| !!! | AATTTATTTTATTATGAACA+GGG | + | chr6_3:76704644-76704663 | Msa0959610:intron | 10.0% |
| !!! | ACGATAATTTTTTTTGATAA+TGG | + | chr6_3:76702540-76702559 | Msa0959610:exon | 15.0% |
| !!! | AATTTTTTTTGATAATGGAA+TGG | + | chr6_3:76702545-76702564 | Msa0959610:exon | 15.0% |
| !! | CTAAATGTAATTTGATTATT+AGG | - | chr6_3:76703478-76703497 | None:intergenic | 15.0% |
| !!! | AATTTTCAAAATTCACAAAT+TGG | - | chr6_3:76703739-76703758 | None:intergenic | 15.0% |
| !!! | GTGAATTTTGAAAATTTTAA+AGG | + | chr6_3:76703743-76703762 | Msa0959610:intron | 15.0% |
| !!! | TCCAATTTTTCAAAATTTAT+AGG | + | chr6_3:76703773-76703792 | Msa0959610:intron | 15.0% |
| !!! | CCAATTTTTCAAAATTTATA+GGG | + | chr6_3:76703774-76703793 | Msa0959610:intron | 15.0% |
| !!! | ATTTCTAAATTTTTACACAT+TGG | - | chr6_3:76703801-76703820 | None:intergenic | 15.0% |
| !!! | TCGAACATTTATTTTTTTAT+CGG | - | chr6_3:76704261-76704280 | None:intergenic | 15.0% |
| !!! | TTTACCTTTTTAAATAAAGT+GGG | - | chr6_3:76704609-76704628 | None:intergenic | 15.0% |
| !!! | ATTTACCTTTTTAAATAAAG+TGG | - | chr6_3:76704610-76704629 | None:intergenic | 15.0% |
| !!! | GAATTTATTTTATTATGAAC+AGG | + | chr6_3:76704643-76704662 | Msa0959610:intron | 15.0% |
| !! | AAAATAAAATTGGAGAAATT+TGG | - | chr6_3:76704721-76704740 | None:intergenic | 15.0% |
| !!! | CAACTTTTTTTAATTATGTA+AGG | - | chr6_3:76704801-76704820 | None:intergenic | 15.0% |
| !!! | TATTTTTATGTAAACCTATA+GGG | + | chr6_3:76704827-76704846 | Msa0959610:intron | 15.0% |
| !! | CTATGAAAAATAAGGATAAA+GGG | - | chr6_3:76702780-76702799 | None:intergenic | 20.0% |
| !! | ACTATGAAAAATAAGGATAA+AGG | - | chr6_3:76702781-76702800 | None:intergenic | 20.0% |
| !!! | TGTTTTGACTATGAAAAATA+AGG | - | chr6_3:76702788-76702807 | None:intergenic | 20.0% |
| !!! | AGTCAAAACATATTTTTTGA+TGG | + | chr6_3:76702798-76702817 | Msa0959610:intron | 20.0% |
| !! | CATAATAAATGAAAGATTCA+GGG | - | chr6_3:76702839-76702858 | None:intergenic | 20.0% |
| !! | TATTTAATAATTGGGTACTA+AGG | - | chr6_3:76702924-76702943 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGAGAAGTATA+TGG | - | chr6_3:76702984-76703003 | None:intergenic | 20.0% |
| !! | GGTGATTAATATTATTCATT+TGG | - | chr6_3:76703025-76703044 | None:intergenic | 20.0% |
| !!! | TTAAAACTTTGTTTCTAGAT+CGG | - | chr6_3:76703170-76703189 | None:intergenic | 20.0% |
| !!! | GAGTATACAATTTTAAAGAT+TGG | - | chr6_3:76703213-76703232 | None:intergenic | 20.0% |
| !!! | TACTTTAGAGATTGAAATTT+CGG | - | chr6_3:76703377-76703396 | None:intergenic | 20.0% |
| !!! | TTTTTTAATAAATTATGGCG+TGG | + | chr6_3:76703407-76703426 | Msa0959610:intron | 20.0% |
| !!! | AGTGTTTTTAGATGTATAAT+TGG | + | chr6_3:76703498-76703517 | Msa0959610:intron | 20.0% |
| !!! | GATGTATAATTGGAAATTTT+AGG | + | chr6_3:76703508-76703527 | Msa0959610:intron | 20.0% |
| !!! | AATTTTGAAAAATTGGAATC+TGG | - | chr6_3:76703770-76703789 | None:intergenic | 20.0% |
| !!! | CCCTATAAATTTTGAAAAAT+TGG | - | chr6_3:76703777-76703796 | None:intergenic | 20.0% |
| !! | TTATTAGATGAAATCAATGT+AGG | + | chr6_3:76704180-76704199 | Msa0959610:intron | 20.0% |
| !!! | TTATGTCATTTTCTTTTTCT+TGG | - | chr6_3:76704487-76704506 | None:intergenic | 20.0% |
| !!! | TTACTACAATTGATAATAGT+TGG | + | chr6_3:76704750-76704769 | Msa0959610:intron | 20.0% |
| !!! | CTATTTTTATGTAAACCTAT+AGG | + | chr6_3:76704826-76704845 | Msa0959610:intron | 20.0% |
| !! | GAAAAATGAGAATAAGAATA+TGG | - | chr6_3:76705152-76705171 | None:intergenic | 20.0% |
| !! | AAATCACATTCAAATAATCA+GGG | - | chr6_3:76705255-76705274 | None:intergenic | 20.0% |
| !! | AAAATCACATTCAAATAATC+AGG | - | chr6_3:76705256-76705275 | None:intergenic | 20.0% |
| ! | ATTCCAATTGTAGTTGAAAA+AGG | - | chr6_3:76702664-76702683 | None:intergenic | 25.0% |
| ! | GCATAATAAATGAAAGATTC+AGG | - | chr6_3:76702840-76702859 | None:intergenic | 25.0% |
| !! | ATTATTCATTTGGTGAAAGT+TGG | - | chr6_3:76703015-76703034 | None:intergenic | 25.0% |
| !!! | CTAGAAACAAAGTTTTAATG+TGG | + | chr6_3:76703172-76703191 | Msa0959610:intron | 25.0% |
| !! | TACTCTTACGATTGAAATTT+TGG | + | chr6_3:76703228-76703247 | Msa0959610:intron | 25.0% |
| ! | TTAGGAAACTAGAATTCAAA+AGG | + | chr6_3:76703526-76703545 | Msa0959610:intron | 25.0% |
| !! | TGTCCATTCTTAATTTTTGT+TGG | + | chr6_3:76703646-76703665 | Msa0959610:intron | 25.0% |
| !! | GTCCATTCTTAATTTTTGTT+GGG | + | chr6_3:76703647-76703666 | Msa0959610:intron | 25.0% |
| !!! | ATTCAACAAGTCACTTTTTT+TGG | - | chr6_3:76703970-76703989 | None:intergenic | 25.0% |
| !! | AAAATGATTTTCACATGAAG+TGG | + | chr6_3:76704215-76704234 | Msa0959610:intron | 25.0% |
| !! | TTTTATCGGATGAAATTATG+TGG | - | chr6_3:76704247-76704266 | None:intergenic | 25.0% |
| ! | TGAGAGAATCTACAAATAAT+TGG | + | chr6_3:76704332-76704351 | Msa0959610:intron | 25.0% |
| ! | TGTAATTAAACATCACTCAA+GGG | - | chr6_3:76704586-76704605 | None:intergenic | 25.0% |
| !! | TACACCCACTTTATTTAAAA+AGG | + | chr6_3:76704602-76704621 | Msa0959610:intron | 25.0% |
| ! | ATAAAATTGGAGAAATTTGG+AGG | - | chr6_3:76704718-76704737 | None:intergenic | 25.0% |
| ! | AGTTGGATTTAAAAAACTTG+AGG | + | chr6_3:76704767-76704786 | Msa0959610:intron | 25.0% |
| ! | CAAATCATTATGTCAAATTC+AGG | + | chr6_3:76704919-76704938 | Msa0959610:intron | 25.0% |
| ! | AATCACATTCAAATAATCAG+GGG | - | chr6_3:76705254-76705273 | None:intergenic | 25.0% |
| GGAATGGAAGACATATTATT+TGG | + | chr6_3:76702561-76702580 | Msa0959610:CDS | 30.0% | |
| ATATGATGCTTGTACCATTA+GGG | + | chr6_3:76702584-76702603 | Msa0959610:CDS | 30.0% | |
| ! | TGACTATTGGTTATCATGTA+TGG | + | chr6_3:76702614-76702633 | Msa0959610:CDS | 30.0% |
| GTATTCAATTACCTTCAACA+TGG | - | chr6_3:76702719-76702738 | None:intergenic | 30.0% | |
| AAAAATAAGGATAAAGGGCA+AGG | - | chr6_3:76702775-76702794 | None:intergenic | 30.0% | |
| !!! | ACATATTTTTTGATGGTTGC+CGG | + | chr6_3:76702805-76702824 | Msa0959610:intron | 30.0% |
| AAGTATATGGACAGAAAAGT+TGG | - | chr6_3:76702971-76702990 | None:intergenic | 30.0% | |
| AGACTTTGTTAGATTCAGAT+AGG | + | chr6_3:76703103-76703122 | Msa0959610:intron | 30.0% | |
| AATTTGATTATTAGGCCTGA+AGG | - | chr6_3:76703470-76703489 | None:intergenic | 30.0% | |
| AGCCCAACAAAAATTAAGAA+TGG | - | chr6_3:76703652-76703671 | None:intergenic | 30.0% | |
| AATGAGACTCTACACTTAAT+GGG | - | chr6_3:76704108-76704127 | None:intergenic | 30.0% | |
| TAATGAGACTCTACACTTAA+TGG | - | chr6_3:76704109-76704128 | None:intergenic | 30.0% | |
| TACAAATAATTGGATTCCCT+AGG | + | chr6_3:76704342-76704361 | Msa0959610:intron | 30.0% | |
| TTACTAACCCTACATTATTG+TGG | - | chr6_3:76704388-76704407 | None:intergenic | 30.0% | |
| GTAATTAAACATCACTCAAG+GGG | - | chr6_3:76704585-76704604 | None:intergenic | 30.0% | |
| GTGTAATTAAACATCACTCA+AGG | - | chr6_3:76704587-76704606 | None:intergenic | 30.0% | |
| AAGTCTTCGAAACCTTATAA+TGG | + | chr6_3:76704973-76704992 | Msa0959610:CDS | 30.0% | |
| AGTCTTCGAAACCTTATAAT+GGG | + | chr6_3:76704974-76704993 | Msa0959610:CDS | 30.0% | |
| TGATAAGAGAATTGATGTAG+TGG | - | chr6_3:76705014-76705033 | None:intergenic | 30.0% | |
| ! | ATAAGTACTGCTTATGATAG+CGG | - | chr6_3:76705047-76705066 | None:intergenic | 30.0% |
| !! | TTGAATGTGATTTTAGAGAG+AGG | + | chr6_3:76705262-76705281 | Msa0959610:CDS | 30.0% |
| GATATGATGCTTGTACCATT+AGG | + | chr6_3:76702583-76702602 | Msa0959610:CDS | 35.0% | |
| ATAGTCATCAGAAACCCTAA+TGG | - | chr6_3:76702601-76702620 | None:intergenic | 35.0% | |
| TTAGGGTTTCTGATGACTAT+TGG | + | chr6_3:76702601-76702620 | Msa0959610:CDS | 35.0% | |
| TTGGTTATCATGTATGGTTG+TGG | + | chr6_3:76702620-76702639 | Msa0959610:CDS | 35.0% | |
| !!! | GAGCCTTTTTCAACTACAAT+TGG | + | chr6_3:76702658-76702677 | Msa0959610:CDS | 35.0% |
| TCAATTACCTTCAACATGGT+AGG | - | chr6_3:76702715-76702734 | None:intergenic | 35.0% | |
| AATTGGGTACTAAGGAGTTT+AGG | - | chr6_3:76702916-76702935 | None:intergenic | 35.0% | |
| GGAAAGCAAAATCAAAGAGT+TGG | - | chr6_3:76703046-76703065 | None:intergenic | 35.0% | |
| TTCATTGACGAATTAACAGG+TGG | - | chr6_3:76703084-76703103 | None:intergenic | 35.0% | |
| GTCTTCATTGACGAATTAAC+AGG | - | chr6_3:76703087-76703106 | None:intergenic | 35.0% | |
| GTTGCTAACTTGATTAGAGA+TGG | - | chr6_3:76703334-76703353 | None:intergenic | 35.0% | |
| !! | ACACTTAATGGGTTATGCTA+TGG | - | chr6_3:76704097-76704116 | None:intergenic | 35.0% |
| !! | GTTAAAGAGAGTGCTAGAAA+GGG | - | chr6_3:76704145-76704164 | None:intergenic | 35.0% |
| !! | TGTTAAAGAGAGTGCTAGAA+AGG | - | chr6_3:76704146-76704165 | None:intergenic | 35.0% |
| ACCTTTGACCACAATAATGT+AGG | + | chr6_3:76704377-76704396 | Msa0959610:intron | 35.0% | |
| CCTTTGACCACAATAATGTA+GGG | + | chr6_3:76704378-76704397 | Msa0959610:intron | 35.0% | |
| TGTAAACCTATAGGGTACAA+TGG | + | chr6_3:76704835-76704854 | Msa0959610:intron | 35.0% | |
| !! | TAAGTGTCGATCCCATTATA+AGG | - | chr6_3:76704988-76705007 | None:intergenic | 35.0% |
| ! | TATAATGGGATCGACACTTA+TGG | + | chr6_3:76704988-76705007 | Msa0959610:CDS | 35.0% |
| ACATCAATTCTCTTATCAGC+TGG | + | chr6_3:76705016-76705035 | Msa0959610:CDS | 35.0% | |
| GAAACCTAATTGAAAGACTG+TGG | - | chr6_3:76705177-76705196 | None:intergenic | 35.0% | |
| TGCATATAAGGAGGCTTAAT+TGG | - | chr6_3:76705204-76705223 | None:intergenic | 35.0% | |
| CCAAATATCCAAAGCAAAAG+TGG | - | chr6_3:76705334-76705353 | None:intergenic | 35.0% | |
| !! | CCACTTTTGCTTTGGATATT+TGG | + | chr6_3:76705331-76705350 | Msa0959610:CDS | 35.0% |
| !!! | CTTGGTTTTATTGTGCTCTT+TGG | + | chr6_3:76705360-76705379 | Msa0959610:CDS | 35.0% |
| TACAACCTTGACATTGTTTG+TGG | + | chr6_3:76705400-76705419 | Msa0959610:CDS | 35.0% | |
| ACAACCTTGACATTGTTTGT+GGG | + | chr6_3:76705401-76705420 | Msa0959610:CDS | 35.0% | |
| TATGGTTGTGGCAAAAGACT+CGG | + | chr6_3:76702632-76702651 | Msa0959610:CDS | 40.0% | |
| ! | ATGCTCATGCTAGACGATTT+TGG | + | chr6_3:76702686-76702705 | Msa0959610:CDS | 40.0% |
| ! | TGCTCATGCTAGACGATTTT+GGG | + | chr6_3:76702687-76702706 | Msa0959610:CDS | 40.0% |
| AAGATTCAGGGTTCAAACTC+CGG | - | chr6_3:76702827-76702846 | None:intergenic | 40.0% | |
| ACTCGTGAACTTAACTCAGT+TGG | - | chr6_3:76702873-76702892 | None:intergenic | 40.0% | |
| TAAATAGGCGACCGACATTT+CGG | + | chr6_3:76703299-76703318 | Msa0959610:intron | 40.0% | |
| GGATATAGTGACCGAAATGT+CGG | - | chr6_3:76703313-76703332 | None:intergenic | 40.0% | |
| AACCTATGTAAGTCTTGGTG+TGG | - | chr6_3:76703439-76703458 | None:intergenic | 40.0% | |
| ! | ACGACAGCTTTTATCGTGTA+AGG | - | chr6_3:76704005-76704024 | None:intergenic | 40.0% |
| CCCTACATTATTGTGGTCAA+AGG | - | chr6_3:76704381-76704400 | None:intergenic | 40.0% | |
| TCTGCCACAGTCTTTCAATT+AGG | + | chr6_3:76705170-76705189 | Msa0959610:CDS | 40.0% | |
| CATCTTGTGGTGTGCATATA+AGG | - | chr6_3:76705216-76705235 | None:intergenic | 40.0% | |
| ACCACAAGATGCAATTTCCT+TGG | + | chr6_3:76705225-76705244 | Msa0959610:CDS | 40.0% | |
| ACCAAGGAAATTGCATCTTG+TGG | - | chr6_3:76705229-76705248 | None:intergenic | 40.0% | |
| AGGAACTACTTTGAACACTG+TGG | + | chr6_3:76705282-76705301 | Msa0959610:CDS | 40.0% | |
| GGAACTACTTTGAACACTGT+GGG | + | chr6_3:76705283-76705302 | Msa0959610:CDS | 40.0% | |
| GAACTACTTTGAACACTGTG+GGG | + | chr6_3:76705284-76705303 | Msa0959610:CDS | 40.0% | |
| TTGGATATTTGGTCCAGTCT+TGG | + | chr6_3:76705342-76705361 | Msa0959610:CDS | 40.0% | |
| GAGCACAATAAAACCAAGAC+TGG | - | chr6_3:76705358-76705377 | None:intergenic | 40.0% | |
| TTGGGTTCCTACCATGTTGA+AGG | + | chr6_3:76702705-76702724 | Msa0959610:CDS | 45.0% | |
| TTTCTAGATCGGTCTCTGTC+TGG | - | chr6_3:76703159-76703178 | None:intergenic | 45.0% | |
| AGCCACACCAAGACTTACAT+AGG | + | chr6_3:76703434-76703453 | Msa0959610:intron | 45.0% | |
| GGGCAAACCTATGTAAGTCT+TGG | - | chr6_3:76703444-76703463 | None:intergenic | 45.0% | |
| ATTATTAGGCCTGAAGGCAG+GGG | - | chr6_3:76703464-76703483 | None:intergenic | 45.0% | |
| GATTATTAGGCCTGAAGGCA+GGG | - | chr6_3:76703465-76703484 | None:intergenic | 45.0% | |
| TGATTATTAGGCCTGAAGGC+AGG | - | chr6_3:76703466-76703485 | None:intergenic | 45.0% | |
| AGGTACCAAAGCAAAGCCTA+GGG | - | chr6_3:76704361-76704380 | None:intergenic | 45.0% | |
| ! | AAGGTACCAAAGCAAAGCCT+AGG | - | chr6_3:76704362-76704381 | None:intergenic | 45.0% |
| CCATTGCCATTGTACCCTAT+AGG | - | chr6_3:76704844-76704863 | None:intergenic | 45.0% | |
| CCTATAGGGTACAATGGCAA+TGG | + | chr6_3:76704841-76704860 | Msa0959610:intron | 45.0% | |
| CTTGTGGTGTGCATATAAGG+AGG | - | chr6_3:76705213-76705232 | None:intergenic | 45.0% | |
| CAAATAATCAGGGGTCACCA+AGG | - | chr6_3:76705245-76705264 | None:intergenic | 45.0% | |
| CTTTGAACACTGTGGGGAAT+AGG | + | chr6_3:76705290-76705309 | Msa0959610:CDS | 45.0% | |
| !! | CTGCTCTTCCACTTTTGCTT+TGG | + | chr6_3:76705323-76705342 | Msa0959610:CDS | 45.0% |
| CACTCCCACAAACAATGTCA+AGG | - | chr6_3:76705408-76705427 | None:intergenic | 45.0% | |
| CTTGACATTGTTTGTGGGAG+TGG | + | chr6_3:76705406-76705425 | Msa0959610:CDS | 45.0% | |
| !! | AACTATAATATTTAATAATT+GGG | - | chr6_3:76702932-76702951 | None:intergenic | 5.0% |
| !! | ATTTATAAACTATAAAAAAT+CGG | - | chr6_3:76703284-76703303 | None:intergenic | 5.0% |
| !!! | ATTTTTTATAGTTTATAAAT+AGG | + | chr6_3:76703284-76703303 | Msa0959610:intron | 5.0% |
| !!! | TTCTATTTTTTAATAAATTA+TGG | + | chr6_3:76703402-76703421 | Msa0959610:intron | 5.0% |
| !! | ATATAGAAATAAAATAAAAT+TGG | - | chr6_3:76704731-76704750 | None:intergenic | 5.0% |
| ! | AGGTGGAGTAGCTTGAGTTG+TGG | - | chr6_3:76703067-76703086 | None:intergenic | 50.0% |
| AGCACGACTCACACACAACA+AGG | + | chr6_3:76703897-76703916 | Msa0959610:intron | 50.0% | |
| GGATTCCCTAGGCTTTGCTT+TGG | + | chr6_3:76704353-76704372 | Msa0959610:intron | 50.0% | |
| CCATAGAGAACGTCGTCAAG+AGG | - | chr6_3:76705082-76705101 | None:intergenic | 50.0% | |
| CCTCTTGACGACGTTCTCTA+TGG | + | chr6_3:76705079-76705098 | Msa0959610:CDS | 50.0% | |
| GACGTTCTCTATGGTGCTCA+CGG | + | chr6_3:76705088-76705107 | Msa0959610:CDS | 50.0% | |
| TGGTGCTCACGGCGAATTTA+TGG | + | chr6_3:76705099-76705118 | Msa0959610:CDS | 50.0% | |
| TCTCTGTCTGGAGGCTGACT+AGG | - | chr6_3:76703147-76703166 | None:intergenic | 55.0% | |
| CTAGATCGGTCTCTGTCTGG+AGG | - | chr6_3:76703156-76703175 | None:intergenic | 55.0% | |
| ATAGGTTTGCCCCTGCCTTC+AGG | + | chr6_3:76703452-76703471 | Msa0959610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 76702510 | 76705511 | 76702510 | ID=Msa0959610;Name=Msa0959610 |
| chr6_3 | mRNA | 76702510 | 76705511 | 76702510 | ID=Msa0959610-mRNA-1;Parent=Msa0959610;Name=Msa0959610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=49|1|1|1|1|1|2|40|232 |
| chr6_3 | exon | 76702510 | 76702726 | 76702510 | ID=Msa0959610-mRNA-1:exon:13775;Parent=Msa0959610-mRNA-1 |
| chr6_3 | exon | 76704941 | 76705511 | 76704941 | ID=Msa0959610-mRNA-1:exon:13776;Parent=Msa0959610-mRNA-1 |
| chr6_3 | five_prime_UTR | 76702510 | 76702558 | 76702510 | ID=Msa0959610-mRNA-1:five_prime_utr;Parent=Msa0959610-mRNA-1 |
| chr6_3 | CDS | 76702559 | 76702726 | 76702559 | ID=Msa0959610-mRNA-1:cds;Parent=Msa0959610-mRNA-1 |
| chr6_3 | CDS | 76704941 | 76705471 | 76704941 | ID=Msa0959610-mRNA-1:cds;Parent=Msa0959610-mRNA-1 |
| chr6_3 | three_prime_UTR | 76705472 | 76705511 | 76705472 | ID=Msa0959610-mRNA-1:three_prime_utr;Parent=Msa0959610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
