Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894500 | XP_013442974.1 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 3.30e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0894500 | 0.820424 | 6.911766e-53 | -8.615850e-47 |
| Msa0034310 | Msa0894500 | -0.802357 | 5.830930e-49 | -8.615850e-47 |
| Msa0617370 | Msa0894500 | 0.802269 | 6.077148e-49 | -8.615850e-47 |
| Msa0621170 | Msa0894500 | -0.817738 | 2.822418e-52 | -8.615850e-47 |
| Msa0640380 | Msa0894500 | 0.828392 | 9.223646e-55 | -8.615850e-47 |
| Msa0641020 | Msa0894500 | 0.811232 | 7.759530e-51 | -8.615850e-47 |
| Msa0722930 | Msa0894500 | 0.843999 | 9.915310e-59 | -8.615850e-47 |
| Msa0723140 | Msa0894500 | 0.834641 | 2.665742e-56 | -8.615850e-47 |
| Msa0807050 | Msa0894500 | 0.848498 | 5.898466e-60 | -8.615850e-47 |
| Msa0819670 | Msa0894500 | 0.822845 | 1.904494e-53 | -8.615850e-47 |
| Msa0832990 | Msa0894500 | 0.846584 | 1.981114e-59 | -8.615850e-47 |
| Msa0128320 | Msa0894500 | -0.803142 | 4.013934e-49 | -8.615850e-47 |
| Msa0216550 | Msa0894500 | 0.814718 | 1.336022e-51 | -8.615850e-47 |
| Msa0371420 | Msa0894500 | -0.802240 | 6.163349e-49 | -8.615850e-47 |
| Msa0379850 | Msa0894500 | 0.817068 | 3.993249e-52 | -8.615850e-47 |
| Msa0389050 | Msa0894500 | 0.801451 | 8.947331e-49 | -8.615850e-47 |
| Msa0401570 | Msa0894500 | 0.851156 | 1.065973e-60 | -8.615850e-47 |
| Msa0411000 | Msa0894500 | 0.814575 | 1.436530e-51 | -8.615850e-47 |
| Msa0419620 | Msa0894500 | -0.824766 | 6.754968e-54 | -8.615850e-47 |
| Msa0429170 | Msa0894500 | 0.800372 | 1.486356e-48 | -8.615850e-47 |
| Msa0431250 | Msa0894500 | 0.821402 | 4.115397e-53 | -8.615850e-47 |
| Msa0454940 | Msa0894500 | 0.807671 | 4.510672e-50 | -8.615850e-47 |
| Msa0455230 | Msa0894500 | 0.815824 | 7.584086e-52 | -8.615850e-47 |
| Msa0465680 | Msa0894500 | -0.828883 | 7.016865e-55 | -8.615850e-47 |
| Msa0470230 | Msa0894500 | -0.824538 | 7.645058e-54 | -8.615850e-47 |
| Msa0290650 | Msa0894500 | 0.804811 | 1.805998e-49 | -8.615850e-47 |
| Msa0295850 | Msa0894500 | 0.819455 | 1.151001e-52 | -8.615850e-47 |
| Msa0363460 | Msa0894500 | 0.815452 | 9.180251e-52 | -8.615850e-47 |
| Msa0496460 | Msa0894500 | 0.801352 | 9.375166e-49 | -8.615850e-47 |
| Msa0502910 | Msa0894500 | 0.836970 | 6.846143e-57 | -8.615850e-47 |
| Msa0511720 | Msa0894500 | -0.805945 | 1.044888e-49 | -8.615850e-47 |
| Msa0563140 | Msa0894500 | 0.808857 | 2.520308e-50 | -8.615850e-47 |
| Msa0843280 | Msa0894500 | 0.821155 | 4.693441e-53 | -8.615850e-47 |
| Msa0871310 | Msa0894500 | 0.830973 | 2.171912e-55 | -8.615850e-47 |
| Msa0883350 | Msa0894500 | 0.800758 | 1.240114e-48 | -8.615850e-47 |
| Msa0883660 | Msa0894500 | 0.824856 | 6.433830e-54 | -8.615850e-47 |
| Msa0894500 | Msa0900200 | 0.840128 | 1.047615e-57 | -8.615850e-47 |
| Msa0894500 | Msa0912470 | 0.800266 | 1.562282e-48 | -8.615850e-47 |
| Msa0894500 | Msa0921080 | 0.847649 | 1.011735e-59 | -8.615850e-47 |
| Msa0894500 | Msa0951720 | 0.810555 | 1.087623e-50 | -8.615850e-47 |
| Msa0894500 | Msa0959610 | 0.829334 | 5.455758e-55 | -8.615850e-47 |
| Msa0894500 | Msa0965520 | 0.838358 | 3.015105e-57 | -8.615850e-47 |
| Msa0894500 | Msa0988500 | 0.800236 | 1.584715e-48 | -8.615850e-47 |
| Msa0894500 | Msa0995220 | 0.839311 | 1.709763e-57 | -8.615850e-47 |
| Msa0894500 | Msa1000020 | 0.847955 | 8.331269e-60 | -8.615850e-47 |
| Msa0894500 | Msa1001200 | 0.801143 | 1.034820e-48 | -8.615850e-47 |
| Msa0894500 | Msa1080790 | 0.882746 | 8.041921e-71 | -8.615850e-47 |
| Msa0894500 | Msa1118930 | 0.876218 | 1.662272e-68 | -8.615850e-47 |
| Msa0894500 | Msa1132950 | 0.857209 | 1.907163e-62 | -8.615850e-47 |
| Msa0894500 | Msa1141250 | -0.841895 | 3.599127e-58 | -8.615850e-47 |
| Msa0894500 | Msa1203360 | 0.802768 | 4.795227e-49 | -8.615850e-47 |
| Msa0894500 | Msa1237260 | 0.807795 | 4.244367e-50 | -8.615850e-47 |
| Msa0894500 | Msa1287160 | 0.814305 | 1.648878e-51 | -8.615850e-47 |
| Msa0894500 | Msa1287340 | 0.803504 | 3.377340e-49 | -8.615850e-47 |
| Msa0894500 | Msa1370630 | 0.866448 | 2.830733e-65 | -8.615850e-47 |
| Msa0894500 | Msa1445250 | 0.813750 | 2.185435e-51 | -8.615850e-47 |
| Msa0894500 | Msa1449670 | -0.801024 | 1.094152e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894500 | MtrunA17_Chr6g0477471 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 3.03e-169 | 465 |
| Msa0894500 | MtrunA17_Chr1g0188581 | 72.996 | 237 | 59 | 3 | 1 | 232 | 1 | 237 | 1.26e-127 | 360 |
| Msa0894500 | MtrunA17_Chr1g0147511 | 69.397 | 232 | 71 | 0 | 1 | 232 | 1 | 232 | 4.68e-120 | 341 |
| Msa0894500 | MtrunA17_Chr3g0139261 | 73.636 | 220 | 58 | 0 | 1 | 220 | 1 | 220 | 1.85e-118 | 337 |
| Msa0894500 | MtrunA17_Chr6g0477661 | 59.633 | 218 | 88 | 0 | 1 | 218 | 1 | 218 | 1.19e-95 | 279 |
| Msa0894500 | MtrunA17_Chr6g0477681 | 53.448 | 232 | 105 | 1 | 1 | 232 | 1 | 229 | 3.02e-88 | 260 |
| Msa0894500 | MtrunA17_Chr5g0428761 | 35.398 | 226 | 139 | 2 | 8 | 227 | 6 | 230 | 7.47e-46 | 153 |
| Msa0894500 | MtrunA17_Chr8g0392461 | 36.408 | 206 | 126 | 1 | 8 | 213 | 6 | 206 | 5.22e-37 | 129 |
| Msa0894500 | MtrunA17_Chr7g0244961 | 35.885 | 209 | 131 | 1 | 7 | 215 | 43 | 248 | 2.00e-29 | 110 |
| Msa0894500 | MtrunA17_Chr2g0282971 | 33.333 | 174 | 110 | 5 | 40 | 212 | 1 | 169 | 4.08e-17 | 76.6 |
| Msa0894500 | MtrunA17_Chr8g0392481 | 45.122 | 82 | 45 | 0 | 7 | 88 | 6 | 87 | 5.05e-17 | 74.3 |
| Msa0894500 | MtrunA17_Chr8g0392471 | 31.646 | 158 | 102 | 2 | 56 | 213 | 98 | 249 | 3.54e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894500 | AT4G31330.1 | 61.181 | 237 | 85 | 2 | 1 | 231 | 1 | 236 | 5.70e-103 | 298 |
| Msa0894500 | AT5G10580.3 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 5.21e-97 | 283 |
| Msa0894500 | AT5G10580.1 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 1.08e-96 | 282 |
| Msa0894500 | AT5G10580.4 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 1.08e-96 | 282 |
| Msa0894500 | AT5G10580.2 | 59.459 | 185 | 67 | 1 | 1 | 177 | 1 | 185 | 2.87e-78 | 234 |
| Msa0894500 | AT5G24790.1 | 52.790 | 233 | 104 | 2 | 1 | 227 | 1 | 233 | 8.62e-77 | 232 |
| Msa0894500 | AT5G24600.1 | 33.473 | 239 | 145 | 3 | 4 | 230 | 2 | 238 | 5.25e-40 | 138 |
| Msa0894500 | AT5G24600.2 | 34.529 | 223 | 132 | 3 | 4 | 214 | 2 | 222 | 1.07e-38 | 134 |
| Msa0894500 | AT3G18215.1 | 34.597 | 211 | 138 | 0 | 3 | 213 | 2 | 212 | 1.10e-37 | 132 |
| Msa0894500 | AT5G43180.1 | 32.727 | 220 | 133 | 3 | 9 | 213 | 8 | 227 | 3.07e-30 | 112 |
| Msa0894500 | AT5G46060.1 | 32.701 | 211 | 138 | 2 | 4 | 213 | 6 | 213 | 1.06e-17 | 79.7 |
| Msa0894500 | AT3G18215.2 | 32.143 | 140 | 95 | 0 | 74 | 213 | 1 | 140 | 5.21e-17 | 76.3 |
Find 46 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTCATGCTAGACGATTT+TGG | 0.136780 | 6_1:+80270402 | Msa0894500:CDS |
| TGGCGCTCACGGCGAATTTA+TGG | 0.137886 | 6_1:+80272870 | Msa0894500:CDS |
| GGAATGGAAGACATATTATT+TGG | 0.196486 | 6_1:+80270277 | Msa0894500:CDS |
| ATTCCAATTGTAGTTGAAAA+AGG | 0.214511 | 6_1:-80270377 | None:intergenic |
| TGCAGATAAGGAGGCTTAAT+TGG | 0.256105 | 6_1:-80272972 | None:intergenic |
| GTGCTCTTTGGCTATGTTGC+TGG | 0.273400 | 6_1:+80273143 | Msa0894500:CDS |
| AAGTCTTCGAAATCTTATAA+TGG | 0.287193 | 6_1:+80272744 | Msa0894500:CDS |
| AAAATCACATTCAAATAATC+AGG | 0.291282 | 6_1:-80273024 | None:intergenic |
| CTTTGAACACTGTGGGGAAT+AGG | 0.316144 | 6_1:+80273061 | Msa0894500:CDS |
| TTAGGGTTTCTGATGACTAT+TGG | 0.325997 | 6_1:+80270317 | Msa0894500:CDS |
| TCTGCCACAGTCTTTCAATT+AGG | 0.330602 | 6_1:+80272941 | Msa0894500:CDS |
| GATATGATGCTTGTACCATT+AGG | 0.338920 | 6_1:+80270299 | Msa0894500:CDS |
| CCTCTTGACGATGTTCTCTA+TGG | 0.359450 | 6_1:+80272850 | Msa0894500:CDS |
| ATATGATGCTTGTACCATTA+GGG | 0.359675 | 6_1:+80270300 | Msa0894500:CDS |
| AGTCTTCGAAATCTTATAAT+GGG | 0.385770 | 6_1:+80272745 | Msa0894500:CDS |
| TATAATGGGATCGACACTTA+TGG | 0.386282 | 6_1:+80272759 | Msa0894500:CDS |
| CATCTTGTGGTGTGCAGATA+AGG | 0.387487 | 6_1:-80272984 | None:intergenic |
| CTTGACATTGTTTGTGGGAG+TGG | 0.388423 | 6_1:+80273177 | Msa0894500:CDS |
| TTGGATATTTGGTCCAGTCT+TGG | 0.409834 | 6_1:+80273113 | Msa0894500:CDS |
| CCAAATATCCAAAGCAAAAG+TGG | 0.434862 | 6_1:-80273102 | None:intergenic |
| TGACTATTGGTTATCATGTA+TGG | 0.440284 | 6_1:+80270330 | Msa0894500:CDS |
| ACCACAAGATGCTATTTCCT+TGG | 0.447435 | 6_1:+80272996 | Msa0894500:CDS |
| TTGGGTTCCTACCATGTTGA+AGG | 0.462529 | 6_1:+80270421 | Msa0894500:CDS |
| TACAACCTTGACATTGTTTG+TGG | 0.466707 | 6_1:+80273171 | Msa0894500:CDS |
| ATAACAACAAAGAGTAAGAA+AGG | 0.478758 | 6_1:+80270226 | None:intergenic |
| ACAACCTTGACATTGTTTGT+GGG | 0.513934 | 6_1:+80273172 | Msa0894500:CDS |
| GAGCACAATAAAACCAAGAC+TGG | 0.525087 | 6_1:-80273126 | None:intergenic |
| ATAGTCATCAGAAACCCTAA+TGG | 0.529052 | 6_1:-80270314 | None:intergenic |
| AAATCACATTCAAATAATCA+GGG | 0.535411 | 6_1:-80273023 | None:intergenic |
| GGAACTACTTTGAACACTGT+GGG | 0.559223 | 6_1:+80273054 | Msa0894500:CDS |
| TTGGTTATCATGTATGGTTG+TGG | 0.598003 | 6_1:+80270336 | Msa0894500:CDS |
| CACTCCCACAAACAATGTCA+AGG | 0.598937 | 6_1:-80273176 | None:intergenic |
| CTTGTGGTGTGCAGATAAGG+AGG | 0.599694 | 6_1:-80272981 | None:intergenic |
| TGATAAAAGAATTGATGTAG+TGG | 0.610318 | 6_1:-80272782 | None:intergenic |
| GATGTTCTCTATGGCGCTCA+CGG | 0.610577 | 6_1:+80272859 | Msa0894500:CDS |
| TCAATTACCTTCAACATGGT+AGG | 0.612368 | 6_1:-80270428 | None:intergenic |
| CCATAGAGAACATCGTCAAG+AGG | 0.618071 | 6_1:-80272850 | None:intergenic |
| ATAAGTACTGCTTATGATAG+CGG | 0.623565 | 6_1:-80272815 | None:intergenic |
| TATGGTTGTGGCATAAGACT+CGG | 0.641131 | 6_1:+80270348 | Msa0894500:CDS |
| CAAATAATCAGGGGTCACCA+AGG | 0.644463 | 6_1:-80273013 | None:intergenic |
| ACCAAGGAAATAGCATCTTG+TGG | 0.646155 | 6_1:-80272997 | None:intergenic |
| GAAACCTAATTGAAAGACTG+TGG | 0.655096 | 6_1:-80272945 | None:intergenic |
| AATCACATTCAAATAATCAG+GGG | 0.662315 | 6_1:-80273022 | None:intergenic |
| AGGAACTACTTTGAACACTG+TGG | 0.685779 | 6_1:+80273053 | Msa0894500:CDS |
| GAACTACTTTGAACACTGTG+GGG | 0.711042 | 6_1:+80273055 | Msa0894500:CDS |
| GTATTCAATTACCTTCAACA+TGG | 0.711102 | 6_1:-80270432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATAAACTATAAAATAT+CGG | - | chr6_1:80270997-80271016 | None:intergenic | 10.0% |
| !!! | ATATTTTATAGTTTATACAT+AGG | + | chr6_1:80270997-80271016 | Msa0894500:intron | 10.0% |
| !!! | TAAGTTTATATTGTTTTATT+TGG | + | chr6_1:80271324-80271343 | Msa0894500:intron | 10.0% |
| !!! | AAATTTGAAATATGAAAAAT+AGG | + | chr6_1:80271398-80271417 | Msa0894500:intron | 10.0% |
| !!! | AATTTGAAATATGAAAAATA+GGG | + | chr6_1:80271399-80271418 | Msa0894500:intron | 10.0% |
| !!! | CTTTAAAATAAAAAAGAAAA+AGG | + | chr6_1:80272167-80272186 | Msa0894500:intron | 10.0% |
| !!! | AACGATAAATTTTTTGATAA+TGG | + | chr6_1:80270256-80270275 | Msa0894500:exon | 15.0% |
| !!! | TAAATTTTTTGATAATGGAA+TGG | + | chr6_1:80270261-80270280 | Msa0894500:exon | 15.0% |
| !! | TATTTAATAATTGAGTACTA+AGG | - | chr6_1:80270640-80270659 | None:intergenic | 15.0% |
| !!! | TTTTTTAATAAATTATCGTG+TGG | + | chr6_1:80271120-80271139 | Msa0894500:intron | 15.0% |
| !!! | AATTTTCAAAATTCACAAAT+TGG | - | chr6_1:80271455-80271474 | None:intergenic | 15.0% |
| !!! | GTGAATTTTGAAAATTTTAA+AGG | + | chr6_1:80271459-80271478 | Msa0894500:intron | 15.0% |
| !!! | TCCAATTTTTCAAAATTTAT+AGG | + | chr6_1:80271489-80271508 | Msa0894500:intron | 15.0% |
| !!! | CCAATTTTTCAAAATTTATA+GGG | + | chr6_1:80271490-80271509 | Msa0894500:intron | 15.0% |
| !!! | ATTTCTAAATTTTTACACAT+TGG | - | chr6_1:80271517-80271536 | None:intergenic | 15.0% |
| !!! | TTTACCTTTTTAAATAAAGT+GGG | - | chr6_1:80272368-80272387 | None:intergenic | 15.0% |
| !!! | ATTTACCTTTTTAAATAAAG+TGG | - | chr6_1:80272369-80272388 | None:intergenic | 15.0% |
| !! | AAATAAAATTGGAGAAATTT+GGG | - | chr6_1:80272479-80272498 | None:intergenic | 15.0% |
| !! | AAAATAAAATTGGAGAAATT+TGG | - | chr6_1:80272480-80272499 | None:intergenic | 15.0% |
| !! | CTATGAAAAATAAGGATAAA+GGG | - | chr6_1:80270496-80270515 | None:intergenic | 20.0% |
| !! | ACTATGAAAAATAAGGATAA+AGG | - | chr6_1:80270497-80270516 | None:intergenic | 20.0% |
| !!! | TGTTTTGACTATGAAAAATA+AGG | - | chr6_1:80270504-80270523 | None:intergenic | 20.0% |
| !! | CATAATAAATGAAAGATTCA+GGG | - | chr6_1:80270555-80270574 | None:intergenic | 20.0% |
| !!! | TTGAAAAAATGAGAAGTATA+TGG | - | chr6_1:80270700-80270719 | None:intergenic | 20.0% |
| !! | GGTGATTAATATTATTCATT+TGG | - | chr6_1:80270740-80270759 | None:intergenic | 20.0% |
| !!! | GAGTATACAATTTTAAAGAT+TGG | - | chr6_1:80270926-80270945 | None:intergenic | 20.0% |
| !!! | TACTTTAGAGATTGAAATTT+CGG | - | chr6_1:80271090-80271109 | None:intergenic | 20.0% |
| !!! | AATTACATTTAGAGTGTTTT+TGG | + | chr6_1:80271199-80271218 | Msa0894500:intron | 20.0% |
| !!! | GATGTATAATTGGAAATTTT+AGG | + | chr6_1:80271221-80271240 | Msa0894500:intron | 20.0% |
| !!! | AATTTTGAAAAATTGGAATC+TGG | - | chr6_1:80271486-80271505 | None:intergenic | 20.0% |
| !!! | CCCTATAAATTTTGAAAAAT+TGG | - | chr6_1:80271493-80271512 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTCACATAAAG+TGG | + | chr6_1:80271931-80271950 | Msa0894500:intron | 20.0% |
| !!! | TCGAACATTTATTTTTCTAT+CGG | - | chr6_1:80271977-80271996 | None:intergenic | 20.0% |
| !!! | TTATGTCATTTTCTTTTTCT+TGG | - | chr6_1:80272246-80272265 | None:intergenic | 20.0% |
| !! | AATAAAATTGGAGAAATTTG+GGG | - | chr6_1:80272478-80272497 | None:intergenic | 20.0% |
| !!! | TTACTACAATTGATAATAGT+TGG | + | chr6_1:80272509-80272528 | Msa0894500:intron | 20.0% |
| !!! | CATTTAGTTTGTTTTATGTA+AGG | - | chr6_1:80272560-80272579 | None:intergenic | 20.0% |
| !!! | TTATTTTTATGTAGACCTAT+AGG | + | chr6_1:80272597-80272616 | Msa0894500:intron | 20.0% |
| !!! | TATTTTTATGTAGACCTATA+GGG | + | chr6_1:80272598-80272617 | Msa0894500:intron | 20.0% |
| !! | GAAAAATGAGAATAAGAATA+TGG | - | chr6_1:80272923-80272942 | None:intergenic | 20.0% |
| !! | AAATCACATTCAAATAATCA+GGG | - | chr6_1:80273026-80273045 | None:intergenic | 20.0% |
| !! | AAAATCACATTCAAATAATC+AGG | - | chr6_1:80273027-80273046 | None:intergenic | 20.0% |
| ! | ATTCCAATTGTAGTTGAAAA+AGG | - | chr6_1:80270380-80270399 | None:intergenic | 25.0% |
| !!! | AGTCAAAACATATTTTTCGA+TGG | + | chr6_1:80270514-80270533 | Msa0894500:intron | 25.0% |
| ! | GCATAATAAATGAAAGATTC+AGG | - | chr6_1:80270556-80270575 | None:intergenic | 25.0% |
| !! | ATTATTCATTTGGTGAAAGT+TGG | - | chr6_1:80270730-80270749 | None:intergenic | 25.0% |
| !!! | GTAGAAACAAAGTTTTAATG+TGG | + | chr6_1:80270885-80270904 | Msa0894500:intron | 25.0% |
| !! | TACTCTTACGATTGAAATTT+TGG | + | chr6_1:80270941-80270960 | Msa0894500:intron | 25.0% |
| ! | AATTTGATTATTAGACCTGA+AGG | - | chr6_1:80271183-80271202 | None:intergenic | 25.0% |
| !!! | AGTGTTTTTGGATGTATAAT+TGG | + | chr6_1:80271211-80271230 | Msa0894500:intron | 25.0% |
| ! | TTAGGAAACTAGAATTCAAA+AGG | + | chr6_1:80271239-80271258 | Msa0894500:intron | 25.0% |
| !! | TGTCCATTCTTAATTTTTGT+TGG | + | chr6_1:80271362-80271381 | Msa0894500:intron | 25.0% |
| !! | GTCCATTCTTAATTTTTGTT+GGG | + | chr6_1:80271363-80271382 | Msa0894500:intron | 25.0% |
| !!! | ATTCAACAAGTCACTTTTTT+TGG | - | chr6_1:80271686-80271705 | None:intergenic | 25.0% |
| ! | GTTAAAGAGAATGTTAGAAA+GGG | - | chr6_1:80271861-80271880 | None:intergenic | 25.0% |
| ! | TGTTAAAGAGAATGTTAGAA+AGG | - | chr6_1:80271862-80271881 | None:intergenic | 25.0% |
| ! | TGAGAGAATCTACAAATAAT+TGG | + | chr6_1:80272048-80272067 | Msa0894500:intron | 25.0% |
| !! | GCAATATCATATTTTGCAAA+TGG | - | chr6_1:80272119-80272138 | None:intergenic | 25.0% |
| ! | TGTAATTAAACATCACTCAA+GGG | - | chr6_1:80272345-80272364 | None:intergenic | 25.0% |
| !! | TACACCCACTTTATTTAAAA+AGG | + | chr6_1:80272361-80272380 | Msa0894500:intron | 25.0% |
| ! | ATAAAATTGGAGAAATTTGG+GGG | - | chr6_1:80272477-80272496 | None:intergenic | 25.0% |
| ! | AGTTGGATTTAAAAAACTTG+AGG | + | chr6_1:80272526-80272545 | Msa0894500:intron | 25.0% |
| ! | CAAATCATTATGTCAAATTC+AGG | + | chr6_1:80272690-80272709 | Msa0894500:intron | 25.0% |
| ! | AAGTCTTCGAAATCTTATAA+TGG | + | chr6_1:80272744-80272763 | Msa0894500:CDS | 25.0% |
| ! | AGTCTTCGAAATCTTATAAT+GGG | + | chr6_1:80272745-80272764 | Msa0894500:CDS | 25.0% |
| ! | TGATAAAAGAATTGATGTAG+TGG | - | chr6_1:80272785-80272804 | None:intergenic | 25.0% |
| ! | AATCACATTCAAATAATCAG+GGG | - | chr6_1:80273025-80273044 | None:intergenic | 25.0% |
| GGAATGGAAGACATATTATT+TGG | + | chr6_1:80270277-80270296 | Msa0894500:CDS | 30.0% | |
| ATATGATGCTTGTACCATTA+GGG | + | chr6_1:80270300-80270319 | Msa0894500:CDS | 30.0% | |
| ! | TGACTATTGGTTATCATGTA+TGG | + | chr6_1:80270330-80270349 | Msa0894500:CDS | 30.0% |
| GTATTCAATTACCTTCAACA+TGG | - | chr6_1:80270435-80270454 | None:intergenic | 30.0% | |
| AAAAATAAGGATAAAGGGCA+AGG | - | chr6_1:80270491-80270510 | None:intergenic | 30.0% | |
| !! | CAAAACATATTTTTCGATGG+TGG | + | chr6_1:80270517-80270536 | Msa0894500:intron | 30.0% |
| AATTGAGTACTAAGGAGTTT+AGG | - | chr6_1:80270632-80270651 | None:intergenic | 30.0% | |
| AAGTATATGGACAGAAAAGT+TGG | - | chr6_1:80270687-80270706 | None:intergenic | 30.0% | |
| ! | GTTGTTAACTTGATTAGAGA+TGG | - | chr6_1:80271047-80271066 | None:intergenic | 30.0% |
| AGCCCAACAAAAATTAAGAA+TGG | - | chr6_1:80271368-80271387 | None:intergenic | 30.0% | |
| AATGAGACTCTACACTTAAT+GGG | - | chr6_1:80271824-80271843 | None:intergenic | 30.0% | |
| TAATGAGACTCTACACTTAA+TGG | - | chr6_1:80271825-80271844 | None:intergenic | 30.0% | |
| TACAAATAATTGGATTCCCT+AGG | + | chr6_1:80272058-80272077 | Msa0894500:intron | 30.0% | |
| GTAATTAAACATCACTCAAG+GGG | - | chr6_1:80272344-80272363 | None:intergenic | 30.0% | |
| GTGTAATTAAACATCACTCA+AGG | - | chr6_1:80272346-80272365 | None:intergenic | 30.0% | |
| ! | ACATCAATTCTTTTATCAGC+TGG | + | chr6_1:80272787-80272806 | Msa0894500:CDS | 30.0% |
| ! | ATAAGTACTGCTTATGATAG+CGG | - | chr6_1:80272818-80272837 | None:intergenic | 30.0% |
| !!! | AAGAAGTGTCACGTATTTTA+GGG | - | chr6_1:80272899-80272918 | None:intergenic | 30.0% |
| !!! | TAAGAAGTGTCACGTATTTT+AGG | - | chr6_1:80272900-80272919 | None:intergenic | 30.0% |
| !! | TTGAATGTGATTTTAGAGAG+AGG | + | chr6_1:80273033-80273052 | Msa0894500:CDS | 30.0% |
| GATATGATGCTTGTACCATT+AGG | + | chr6_1:80270299-80270318 | Msa0894500:CDS | 35.0% | |
| ATAGTCATCAGAAACCCTAA+TGG | - | chr6_1:80270317-80270336 | None:intergenic | 35.0% | |
| TTAGGGTTTCTGATGACTAT+TGG | + | chr6_1:80270317-80270336 | Msa0894500:CDS | 35.0% | |
| TTGGTTATCATGTATGGTTG+TGG | + | chr6_1:80270336-80270355 | Msa0894500:CDS | 35.0% | |
| !!! | GAGCCTTTTTCAACTACAAT+TGG | + | chr6_1:80270374-80270393 | Msa0894500:CDS | 35.0% |
| TCAATTACCTTCAACATGGT+AGG | - | chr6_1:80270431-80270450 | None:intergenic | 35.0% | |
| GGAAAGCAAAATCAAAGAGT+TGG | - | chr6_1:80270761-80270780 | None:intergenic | 35.0% | |
| TTCATTGACGAATTAACAGG+TGG | - | chr6_1:80270799-80270818 | None:intergenic | 35.0% | |
| GTCTTCATTGACGAATTAAC+AGG | - | chr6_1:80270802-80270821 | None:intergenic | 35.0% | |
| GAAGACTGTTAGATTCAGAT+AGG | + | chr6_1:80270816-80270835 | Msa0894500:intron | 35.0% | |
| TTCTATCGGATGAAATTACG+TGG | - | chr6_1:80271963-80271982 | None:intergenic | 35.0% | |
| ACCTTTGACCACAATAATGT+AGG | + | chr6_1:80272093-80272112 | Msa0894500:intron | 35.0% | |
| !! | TGCCACTTTCATTCAAAAAG+AGG | + | chr6_1:80272136-80272155 | Msa0894500:intron | 35.0% |
| ! | GCCACTTTCATTCAAAAAGA+GGG | + | chr6_1:80272137-80272156 | Msa0894500:intron | 35.0% |
| ! | ACCCTCTTTTTGAATGAAAG+TGG | - | chr6_1:80272141-80272160 | None:intergenic | 35.0% |
| ! | TATAATGGGATCGACACTTA+TGG | + | chr6_1:80272759-80272778 | Msa0894500:CDS | 35.0% |
| GAAACCTAATTGAAAGACTG+TGG | - | chr6_1:80272948-80272967 | None:intergenic | 35.0% | |
| CCAAATATCCAAAGCAAAAG+TGG | - | chr6_1:80273105-80273124 | None:intergenic | 35.0% | |
| !! | CCACTTTTGCTTTGGATATT+TGG | + | chr6_1:80273102-80273121 | Msa0894500:CDS | 35.0% |
| !!! | CTTGGTTTTATTGTGCTCTT+TGG | + | chr6_1:80273131-80273150 | Msa0894500:CDS | 35.0% |
| TACAACCTTGACATTGTTTG+TGG | + | chr6_1:80273171-80273190 | Msa0894500:CDS | 35.0% | |
| ACAACCTTGACATTGTTTGT+GGG | + | chr6_1:80273172-80273191 | Msa0894500:CDS | 35.0% | |
| TATGGTTGTGGCATAAGACT+CGG | + | chr6_1:80270348-80270367 | Msa0894500:CDS | 40.0% | |
| ! | ATGCTCATGCTAGACGATTT+TGG | + | chr6_1:80270402-80270421 | Msa0894500:CDS | 40.0% |
| ! | TGCTCATGCTAGACGATTTT+GGG | + | chr6_1:80270403-80270422 | Msa0894500:CDS | 40.0% |
| !! | ACATATTTTTCGATGGTGGC+CGG | + | chr6_1:80270521-80270540 | Msa0894500:intron | 40.0% |
| AAGATTCAGGGTTCAAACTC+CGG | - | chr6_1:80270543-80270562 | None:intergenic | 40.0% | |
| ACTCGTGAACTTAACTCAGT+TGG | - | chr6_1:80270589-80270608 | None:intergenic | 40.0% | |
| TACATAGGTGACCGACATTT+CGG | + | chr6_1:80271012-80271031 | Msa0894500:intron | 40.0% | |
| GGATATAGTGACCGAAATGT+CGG | - | chr6_1:80271026-80271045 | None:intergenic | 40.0% | |
| AACCTATGTAAGTCTTGGTG+TGG | - | chr6_1:80271152-80271171 | None:intergenic | 40.0% | |
| ATTATTAGACCTGAAGGCAG+GGG | - | chr6_1:80271177-80271196 | None:intergenic | 40.0% | |
| GATTATTAGACCTGAAGGCA+GGG | - | chr6_1:80271178-80271197 | None:intergenic | 40.0% | |
| TGATTATTAGACCTGAAGGC+AGG | - | chr6_1:80271179-80271198 | None:intergenic | 40.0% | |
| GCCTACATTATTGTGGTCAA+AGG | - | chr6_1:80272097-80272116 | None:intergenic | 40.0% | |
| GCAAATGGCCTACATTATTG+TGG | - | chr6_1:80272104-80272123 | None:intergenic | 40.0% | |
| TGTAGACCTATAGGGTACAA+TGG | + | chr6_1:80272606-80272625 | Msa0894500:intron | 40.0% | |
| TCTGCCACAGTCTTTCAATT+AGG | + | chr6_1:80272941-80272960 | Msa0894500:CDS | 40.0% | |
| TGCAGATAAGGAGGCTTAAT+TGG | - | chr6_1:80272975-80272994 | None:intergenic | 40.0% | |
| !! | ACCACAAGATGCTATTTCCT+TGG | + | chr6_1:80272996-80273015 | Msa0894500:CDS | 40.0% |
| ACCAAGGAAATAGCATCTTG+TGG | - | chr6_1:80273000-80273019 | None:intergenic | 40.0% | |
| AGGAACTACTTTGAACACTG+TGG | + | chr6_1:80273053-80273072 | Msa0894500:CDS | 40.0% | |
| GGAACTACTTTGAACACTGT+GGG | + | chr6_1:80273054-80273073 | Msa0894500:CDS | 40.0% | |
| GAACTACTTTGAACACTGTG+GGG | + | chr6_1:80273055-80273074 | Msa0894500:CDS | 40.0% | |
| TTGGATATTTGGTCCAGTCT+TGG | + | chr6_1:80273113-80273132 | Msa0894500:CDS | 40.0% | |
| GAGCACAATAAAACCAAGAC+TGG | - | chr6_1:80273129-80273148 | None:intergenic | 40.0% | |
| TTGGGTTCCTACCATGTTGA+AGG | + | chr6_1:80270421-80270440 | Msa0894500:CDS | 45.0% | |
| AGCCACACCAAGACTTACAT+AGG | + | chr6_1:80271147-80271166 | Msa0894500:intron | 45.0% | |
| GGGCAAACCTATGTAAGTCT+TGG | - | chr6_1:80271157-80271176 | None:intergenic | 45.0% | |
| ! | ACGACAGCTTTTGTCGTGTA+AGG | - | chr6_1:80271721-80271740 | None:intergenic | 45.0% |
| AGGTACCAAAGCAAAGCCTA+GGG | - | chr6_1:80272077-80272096 | None:intergenic | 45.0% | |
| ! | AAGGTACCAAAGCAAAGCCT+AGG | - | chr6_1:80272078-80272097 | None:intergenic | 45.0% |
| CCATTGCCATTGTACCCTAT+AGG | - | chr6_1:80272615-80272634 | None:intergenic | 45.0% | |
| CCTATAGGGTACAATGGCAA+TGG | + | chr6_1:80272612-80272631 | Msa0894500:intron | 45.0% | |
| CCATAGAGAACATCGTCAAG+AGG | - | chr6_1:80272853-80272872 | None:intergenic | 45.0% | |
| CCTCTTGACGATGTTCTCTA+TGG | + | chr6_1:80272850-80272869 | Msa0894500:CDS | 45.0% | |
| CATCTTGTGGTGTGCAGATA+AGG | - | chr6_1:80272987-80273006 | None:intergenic | 45.0% | |
| CAAATAATCAGGGGTCACCA+AGG | - | chr6_1:80273016-80273035 | None:intergenic | 45.0% | |
| CTTTGAACACTGTGGGGAAT+AGG | + | chr6_1:80273061-80273080 | Msa0894500:CDS | 45.0% | |
| !! | CTGCTCTTCCACTTTTGCTT+TGG | + | chr6_1:80273094-80273113 | Msa0894500:CDS | 45.0% |
| CACTCCCACAAACAATGTCA+AGG | - | chr6_1:80273179-80273198 | None:intergenic | 45.0% | |
| CTTGACATTGTTTGTGGGAG+TGG | + | chr6_1:80273177-80273196 | Msa0894500:CDS | 45.0% | |
| !! | ATATAGAAATAAAATAAAAT+TGG | - | chr6_1:80272490-80272509 | None:intergenic | 5.0% |
| ! | AGGTGGAGTAGCTTGAGTTG+TGG | - | chr6_1:80270782-80270801 | None:intergenic | 50.0% |
| AGCACGACTCACACACAACA+AGG | + | chr6_1:80271613-80271632 | Msa0894500:intron | 50.0% | |
| GGATTCCCTAGGCTTTGCTT+TGG | + | chr6_1:80272069-80272088 | Msa0894500:intron | 50.0% | |
| GATGTTCTCTATGGCGCTCA+CGG | + | chr6_1:80272859-80272878 | Msa0894500:CDS | 50.0% | |
| CTTGTGGTGTGCAGATAAGG+AGG | - | chr6_1:80272984-80273003 | None:intergenic | 50.0% | |
| GTGCTCTTTGGCTATGTTGC+TGG | + | chr6_1:80273143-80273162 | Msa0894500:CDS | 50.0% | |
| TCTCTGTCTGCAGGCTGACT+AGG | - | chr6_1:80270860-80270879 | None:intergenic | 55.0% | |
| AGTCAGCCTGCAGACAGAGA+CGG | + | chr6_1:80270860-80270879 | Msa0894500:intron | 55.0% | |
| CTACATCCGTCTCTGTCTGC+AGG | - | chr6_1:80270869-80270888 | None:intergenic | 55.0% | |
| ATAGGTTTGCCCCTGCCTTC+AGG | + | chr6_1:80271165-80271184 | Msa0894500:intron | 55.0% | |
| TGGCGCTCACGGCGAATTTA+TGG | + | chr6_1:80272870-80272889 | Msa0894500:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 80270227 | 80273278 | 80270227 | ID=Msa0894500;Name=Msa0894500 |
| chr6_1 | mRNA | 80270227 | 80273278 | 80270227 | ID=Msa0894500-mRNA-1;Parent=Msa0894500;Name=Msa0894500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=48|1|1|1|1|1|2|36|232 |
| chr6_1 | exon | 80270227 | 80270442 | 80270227 | ID=Msa0894500-mRNA-1:exon:13447;Parent=Msa0894500-mRNA-1 |
| chr6_1 | exon | 80272712 | 80273278 | 80272712 | ID=Msa0894500-mRNA-1:exon:13448;Parent=Msa0894500-mRNA-1 |
| chr6_1 | five_prime_UTR | 80270227 | 80270274 | 80270227 | ID=Msa0894500-mRNA-1:five_prime_utr;Parent=Msa0894500-mRNA-1 |
| chr6_1 | CDS | 80270275 | 80270442 | 80270275 | ID=Msa0894500-mRNA-1:cds;Parent=Msa0894500-mRNA-1 |
| chr6_1 | CDS | 80272712 | 80273242 | 80272712 | ID=Msa0894500-mRNA-1:cds;Parent=Msa0894500-mRNA-1 |
| chr6_1 | three_prime_UTR | 80273243 | 80273278 | 80273243 | ID=Msa0894500-mRNA-1:three_prime_utr;Parent=Msa0894500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
