Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995220 | XP_013442974.1 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 3.30e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995220 | A0A072THH5 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 1.57e-165 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630850 | Msa0995220 | 0.801244 | 9.864893e-49 | -8.615850e-47 |
| Msa0643020 | Msa0995220 | -0.823325 | 1.471603e-53 | -8.615850e-47 |
| Msa0682730 | Msa0995220 | -0.840376 | 9.024154e-58 | -8.615850e-47 |
| Msa0796460 | Msa0995220 | 0.841175 | 5.573777e-58 | -8.615850e-47 |
| Msa0188500 | Msa0995220 | 0.801669 | 8.073608e-49 | -8.615850e-47 |
| Msa0995220 | Msa1012520 | -0.802885 | 4.536830e-49 | -8.615850e-47 |
| Msa0995220 | Msa1038110 | 0.809280 | 2.045908e-50 | -8.615850e-47 |
| Msa0995220 | Msa1053990 | -0.822611 | 2.158818e-53 | -8.615850e-47 |
| Msa0995220 | Msa1080790 | 0.819806 | 9.570866e-53 | -8.615850e-47 |
| Msa0995220 | Msa1118930 | 0.820321 | 7.297276e-53 | -8.615850e-47 |
| Msa0995220 | Msa1211390 | 0.801040 | 1.086090e-48 | -8.615850e-47 |
| Msa0995220 | Msa1237260 | 0.809826 | 1.561308e-50 | -8.615850e-47 |
| Msa0995220 | Msa1240060 | -0.816224 | 6.173941e-52 | -8.615850e-47 |
| Msa0995220 | Msa1281370 | -0.802157 | 6.409325e-49 | -8.615850e-47 |
| Msa0995220 | Msa1320530 | -0.820350 | 7.185961e-53 | -8.615850e-47 |
| Msa0995220 | Msa1353280 | 0.813895 | 2.029876e-51 | -8.615850e-47 |
| Msa0995220 | Msa1370630 | 0.837060 | 6.496167e-57 | -8.615850e-47 |
| Msa0995220 | Msa1401000 | 0.800452 | 1.431456e-48 | -8.615850e-47 |
| Msa0995220 | Msa1427180 | 0.804702 | 1.903277e-49 | -8.615850e-47 |
| Msa0264420 | Msa0995220 | 0.808087 | 3.679821e-50 | -8.615850e-47 |
| Msa0352640 | Msa0995220 | 0.803686 | 3.096198e-49 | -8.615850e-47 |
| Msa0496460 | Msa0995220 | 0.837430 | 5.220942e-57 | -8.615850e-47 |
| Msa0496470 | Msa0995220 | 0.803354 | 3.628515e-49 | -8.615850e-47 |
| Msa0601920 | Msa0995220 | -0.826089 | 3.284675e-54 | -8.615850e-47 |
| Msa0871310 | Msa0995220 | 0.840581 | 7.976291e-58 | -8.615850e-47 |
| Msa0894500 | Msa0995220 | 0.839311 | 1.709763e-57 | -8.615850e-47 |
| Msa0921080 | Msa0995220 | 0.823908 | 1.075014e-53 | -8.615850e-47 |
| Msa0959610 | Msa0995220 | 0.829024 | 6.487059e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995220 | MtrunA17_Chr6g0477471 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 3.03e-169 | 465 |
| Msa0995220 | MtrunA17_Chr1g0188581 | 72.996 | 237 | 59 | 3 | 1 | 232 | 1 | 237 | 1.26e-127 | 360 |
| Msa0995220 | MtrunA17_Chr1g0147511 | 69.397 | 232 | 71 | 0 | 1 | 232 | 1 | 232 | 4.68e-120 | 341 |
| Msa0995220 | MtrunA17_Chr3g0139261 | 73.636 | 220 | 58 | 0 | 1 | 220 | 1 | 220 | 1.85e-118 | 337 |
| Msa0995220 | MtrunA17_Chr6g0477661 | 59.633 | 218 | 88 | 0 | 1 | 218 | 1 | 218 | 1.19e-95 | 279 |
| Msa0995220 | MtrunA17_Chr6g0477681 | 53.448 | 232 | 105 | 1 | 1 | 232 | 1 | 229 | 3.02e-88 | 260 |
| Msa0995220 | MtrunA17_Chr5g0428761 | 35.398 | 226 | 139 | 2 | 8 | 227 | 6 | 230 | 7.47e-46 | 153 |
| Msa0995220 | MtrunA17_Chr8g0392461 | 36.408 | 206 | 126 | 1 | 8 | 213 | 6 | 206 | 5.22e-37 | 129 |
| Msa0995220 | MtrunA17_Chr7g0244961 | 35.885 | 209 | 131 | 1 | 7 | 215 | 43 | 248 | 2.00e-29 | 110 |
| Msa0995220 | MtrunA17_Chr2g0282971 | 33.333 | 174 | 110 | 5 | 40 | 212 | 1 | 169 | 4.08e-17 | 76.6 |
| Msa0995220 | MtrunA17_Chr8g0392481 | 45.122 | 82 | 45 | 0 | 7 | 88 | 6 | 87 | 5.05e-17 | 74.3 |
| Msa0995220 | MtrunA17_Chr8g0392471 | 31.646 | 158 | 102 | 2 | 56 | 213 | 98 | 249 | 3.54e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995220 | AT4G31330.1 | 61.181 | 237 | 85 | 2 | 1 | 231 | 1 | 236 | 5.70e-103 | 298 |
| Msa0995220 | AT5G10580.3 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 5.21e-97 | 283 |
| Msa0995220 | AT5G10580.1 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 1.08e-96 | 282 |
| Msa0995220 | AT5G10580.4 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 1.08e-96 | 282 |
| Msa0995220 | AT5G10580.2 | 59.459 | 185 | 67 | 1 | 1 | 177 | 1 | 185 | 2.87e-78 | 234 |
| Msa0995220 | AT5G24790.1 | 52.790 | 233 | 104 | 2 | 1 | 227 | 1 | 233 | 8.62e-77 | 232 |
| Msa0995220 | AT5G24600.1 | 33.473 | 239 | 145 | 3 | 4 | 230 | 2 | 238 | 5.25e-40 | 138 |
| Msa0995220 | AT5G24600.2 | 34.529 | 223 | 132 | 3 | 4 | 214 | 2 | 222 | 1.07e-38 | 134 |
| Msa0995220 | AT3G18215.1 | 34.597 | 211 | 138 | 0 | 3 | 213 | 2 | 212 | 1.10e-37 | 132 |
| Msa0995220 | AT5G43180.1 | 32.727 | 220 | 133 | 3 | 9 | 213 | 8 | 227 | 3.07e-30 | 112 |
| Msa0995220 | AT5G46060.1 | 32.701 | 211 | 138 | 2 | 4 | 213 | 6 | 213 | 1.06e-17 | 79.7 |
| Msa0995220 | AT3G18215.2 | 32.143 | 140 | 95 | 0 | 74 | 213 | 1 | 140 | 5.21e-17 | 76.3 |
Find 45 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTCATGCTAGACGATTT+TGG | 0.136780 | 6_4:+71003683 | Msa0995220:CDS |
| TGGCGCTCACGGCGAATTTA+TGG | 0.137886 | 6_4:+71006154 | Msa0995220:CDS |
| GGAATGGAAGACATATTATT+TGG | 0.196486 | 6_4:+71003558 | Msa0995220:CDS |
| ATTCCAATTGTAGTTGAAAA+AGG | 0.214511 | 6_4:-71003658 | None:intergenic |
| TGCAGATAAGGAGGCTTAAT+TGG | 0.256105 | 6_4:-71006256 | None:intergenic |
| AAGTCTTCGAAATCTTATAA+TGG | 0.287193 | 6_4:+71006028 | Msa0995220:CDS |
| AAAATCACATTCAAATAATC+AGG | 0.291282 | 6_4:-71006308 | None:intergenic |
| CTTTGAACACTGTGGGGAAT+AGG | 0.316144 | 6_4:+71006345 | Msa0995220:CDS |
| TTAGGGTTTCTGATGACTAT+TGG | 0.325997 | 6_4:+71003598 | Msa0995220:CDS |
| TCTGCCACAGTCTTTCAATT+AGG | 0.330602 | 6_4:+71006225 | Msa0995220:CDS |
| GATATGATGCTTGTACCATT+AGG | 0.338920 | 6_4:+71003580 | Msa0995220:CDS |
| CCTCTTGACGATGTTCTCTA+TGG | 0.359450 | 6_4:+71006134 | Msa0995220:CDS |
| ATATGATGCTTGTACCATTA+GGG | 0.359675 | 6_4:+71003581 | Msa0995220:CDS |
| AGTCTTCGAAATCTTATAAT+GGG | 0.385770 | 6_4:+71006029 | Msa0995220:CDS |
| TATAATGGGATCGACACTTA+TGG | 0.386282 | 6_4:+71006043 | Msa0995220:CDS |
| CATCTTGTGGTGTGCAGATA+AGG | 0.387487 | 6_4:-71006268 | None:intergenic |
| CTTGACATTGTTTGTGGGAG+TGG | 0.388423 | 6_4:+71006461 | Msa0995220:CDS |
| TTGGATATTTGGTCCAGTCT+TGG | 0.409834 | 6_4:+71006397 | Msa0995220:CDS |
| CCAAATATCCAAAGCAAAAG+TGG | 0.434862 | 6_4:-71006386 | None:intergenic |
| TGACTATTGGTTATCATGTA+TGG | 0.440284 | 6_4:+71003611 | Msa0995220:CDS |
| ACCACAAGATGCTATTTCCT+TGG | 0.447435 | 6_4:+71006280 | Msa0995220:CDS |
| TTGGGTTCCTACCATGTTGA+AGG | 0.462529 | 6_4:+71003702 | Msa0995220:CDS |
| TACAACCTTGACATTGTTTG+TGG | 0.466707 | 6_4:+71006455 | Msa0995220:CDS |
| ATAACAACAAAGAGTAAGAA+AGG | 0.478758 | 6_4:+71003506 | None:intergenic |
| ACAACCTTGACATTGTTTGT+GGG | 0.513934 | 6_4:+71006456 | Msa0995220:CDS |
| GAGCACAATAAAACCAAGAC+TGG | 0.525087 | 6_4:-71006410 | None:intergenic |
| ATAGTCATCAGAAACCCTAA+TGG | 0.529052 | 6_4:-71003595 | None:intergenic |
| AAATCACATTCAAATAATCA+GGG | 0.535411 | 6_4:-71006307 | None:intergenic |
| GGAACTACTTTGAACACTGT+GGG | 0.559223 | 6_4:+71006338 | Msa0995220:CDS |
| TTGGTTATCATGTATGGTTG+TGG | 0.598003 | 6_4:+71003617 | Msa0995220:CDS |
| CACTCCCACAAACAATGTCA+AGG | 0.598937 | 6_4:-71006460 | None:intergenic |
| CTTGTGGTGTGCAGATAAGG+AGG | 0.599694 | 6_4:-71006265 | None:intergenic |
| TGATAAAAGAATTGATGTAG+TGG | 0.610318 | 6_4:-71006066 | None:intergenic |
| GATGTTCTCTATGGCGCTCA+CGG | 0.610577 | 6_4:+71006143 | Msa0995220:CDS |
| TCAATTACCTTCAACATGGT+AGG | 0.612368 | 6_4:-71003709 | None:intergenic |
| CCATAGAGAACATCGTCAAG+AGG | 0.618071 | 6_4:-71006134 | None:intergenic |
| ATAAGTACTGCTTATGATAG+CGG | 0.623565 | 6_4:-71006099 | None:intergenic |
| TATGGTTGTGGCATAAGACT+CGG | 0.641131 | 6_4:+71003629 | Msa0995220:CDS |
| CAAATAATCAGGGGTCACCA+AGG | 0.644463 | 6_4:-71006297 | None:intergenic |
| ACCAAGGAAATAGCATCTTG+TGG | 0.646155 | 6_4:-71006281 | None:intergenic |
| GAAACCTAATTGAAAGACTG+TGG | 0.655096 | 6_4:-71006229 | None:intergenic |
| AATCACATTCAAATAATCAG+GGG | 0.662315 | 6_4:-71006306 | None:intergenic |
| AGGAACTACTTTGAACACTG+TGG | 0.685779 | 6_4:+71006337 | Msa0995220:CDS |
| GAACTACTTTGAACACTGTG+GGG | 0.711042 | 6_4:+71006339 | Msa0995220:CDS |
| GTATTCAATTACCTTCAACA+TGG | 0.711102 | 6_4:-71003713 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATAAACTATAAAATAT+CGG | - | chr6_4:71004281-71004300 | None:intergenic | 10.0% |
| !!! | ATATTTTATAGTTTATACAT+AGG | + | chr6_4:71004281-71004300 | Msa0995220:intron | 10.0% |
| !!! | TAAGTTTATATTGTTTTATT+TGG | + | chr6_4:71004608-71004627 | Msa0995220:intron | 10.0% |
| !!! | AAATTTGAAATATGAAAAAT+AGG | + | chr6_4:71004682-71004701 | Msa0995220:intron | 10.0% |
| !!! | AATTTGAAATATGAAAAATA+GGG | + | chr6_4:71004683-71004702 | Msa0995220:intron | 10.0% |
| !!! | CTTTAAAATAAAAAAGAAAA+AGG | + | chr6_4:71005451-71005470 | Msa0995220:intron | 10.0% |
| !!! | ACGATAAATTTTTTTGATAA+TGG | + | chr6_4:71003537-71003556 | Msa0995220:exon | 15.0% |
| !!! | AAATTTTTTTGATAATGGAA+TGG | + | chr6_4:71003542-71003561 | Msa0995220:exon | 15.0% |
| !! | TATTTAATAATTGAGTACTA+AGG | - | chr6_4:71003922-71003941 | None:intergenic | 15.0% |
| !!! | TTTTTTAATAAATTATGGTG+TGG | + | chr6_4:71004404-71004423 | Msa0995220:intron | 15.0% |
| !!! | AATTTTCAAAATTCACAAAT+TGG | - | chr6_4:71004739-71004758 | None:intergenic | 15.0% |
| !!! | GTGAATTTTGAAAATTTTAA+AGG | + | chr6_4:71004743-71004762 | Msa0995220:intron | 15.0% |
| !!! | TCCAATTTTTCAAAATTTAT+AGG | + | chr6_4:71004773-71004792 | Msa0995220:intron | 15.0% |
| !!! | CCAATTTTTCAAAATTTATA+GGG | + | chr6_4:71004774-71004793 | Msa0995220:intron | 15.0% |
| !!! | ATTTCTAAATTTTTACACAT+TGG | - | chr6_4:71004801-71004820 | None:intergenic | 15.0% |
| !!! | TTTACCTTTTTAAATAAAGT+GGG | - | chr6_4:71005652-71005671 | None:intergenic | 15.0% |
| !!! | ATTTACCTTTTTAAATAAAG+TGG | - | chr6_4:71005653-71005672 | None:intergenic | 15.0% |
| !! | AAAATAAAATTGGAGAAATT+TGG | - | chr6_4:71005764-71005783 | None:intergenic | 15.0% |
| !! | ACTATGAAAAATAAGGATAA+AGG | - | chr6_4:71003779-71003798 | None:intergenic | 20.0% |
| !!! | TGTTTTGACTATGAAAAATA+AGG | - | chr6_4:71003786-71003805 | None:intergenic | 20.0% |
| !! | CATAATAAATGAAAGATTCA+GGG | - | chr6_4:71003837-71003856 | None:intergenic | 20.0% |
| !!! | TTGAAAAAATGAGAAGTATA+TGG | - | chr6_4:71003982-71004001 | None:intergenic | 20.0% |
| !! | GGTGATTAATATTATTCATT+TGG | - | chr6_4:71004022-71004041 | None:intergenic | 20.0% |
| !!! | GAGTATACAATTTTAAAGAT+TGG | - | chr6_4:71004210-71004229 | None:intergenic | 20.0% |
| !!! | TACTTTAGAGATTGAAATTT+CGG | - | chr6_4:71004374-71004393 | None:intergenic | 20.0% |
| !!! | AATTACATTTAGAGTGTTTT+TGG | + | chr6_4:71004483-71004502 | Msa0995220:intron | 20.0% |
| !!! | GATGTATAATTGGAAATTTT+AGG | + | chr6_4:71004505-71004524 | Msa0995220:intron | 20.0% |
| !!! | AATTTTGAAAAATTGGAATC+TGG | - | chr6_4:71004770-71004789 | None:intergenic | 20.0% |
| !!! | CCCTATAAATTTTGAAAAAT+TGG | - | chr6_4:71004777-71004796 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTCACATAAAG+TGG | + | chr6_4:71005215-71005234 | Msa0995220:intron | 20.0% |
| !!! | TCGAACATTTATTTTTCTAT+CGG | - | chr6_4:71005261-71005280 | None:intergenic | 20.0% |
| !!! | TTATGTCATTTTCTTTTTCT+TGG | - | chr6_4:71005530-71005549 | None:intergenic | 20.0% |
| !!! | TTACTACAATTGATAATAGT+TGG | + | chr6_4:71005793-71005812 | Msa0995220:intron | 20.0% |
| !!! | CATTTAGTTTGTTTTATGTA+AGG | - | chr6_4:71005844-71005863 | None:intergenic | 20.0% |
| !!! | TTATTTTTATGTAGACCTAT+AGG | + | chr6_4:71005881-71005900 | Msa0995220:intron | 20.0% |
| !!! | TATTTTTATGTAGACCTATA+GGG | + | chr6_4:71005882-71005901 | Msa0995220:intron | 20.0% |
| !! | GAAAAATGAGAATAAGAATA+TGG | - | chr6_4:71006207-71006226 | None:intergenic | 20.0% |
| !! | AAATCACATTCAAATAATCA+GGG | - | chr6_4:71006310-71006329 | None:intergenic | 20.0% |
| !! | AAAATCACATTCAAATAATC+AGG | - | chr6_4:71006311-71006330 | None:intergenic | 20.0% |
| ! | ATTCCAATTGTAGTTGAAAA+AGG | - | chr6_4:71003661-71003680 | None:intergenic | 25.0% |
| ! | AAAAATAAGGATAAAGGACA+AGG | - | chr6_4:71003773-71003792 | None:intergenic | 25.0% |
| !!! | AGTCAAAACATATTTTTCGA+TGG | + | chr6_4:71003796-71003815 | Msa0995220:intron | 25.0% |
| ! | GCATAATAAATGAAAGATTC+AGG | - | chr6_4:71003838-71003857 | None:intergenic | 25.0% |
| !! | ATTATTCATTTGGTGAAAGT+TGG | - | chr6_4:71004012-71004031 | None:intergenic | 25.0% |
| !!! | CTAGAAACAAAGTTTTAATG+TGG | + | chr6_4:71004169-71004188 | Msa0995220:intron | 25.0% |
| !! | TACTCTTACGATTGAAATTT+TGG | + | chr6_4:71004225-71004244 | Msa0995220:intron | 25.0% |
| ! | AATTTGATTATTAGACCTGA+AGG | - | chr6_4:71004467-71004486 | None:intergenic | 25.0% |
| !!! | AGTGTTTTTGGATGTATAAT+TGG | + | chr6_4:71004495-71004514 | Msa0995220:intron | 25.0% |
| ! | TTAGGAAACTTGAATTCAAA+AGG | + | chr6_4:71004523-71004542 | Msa0995220:intron | 25.0% |
| !! | TGTCCATTCTTAATTTTTGT+TGG | + | chr6_4:71004646-71004665 | Msa0995220:intron | 25.0% |
| !! | GTCCATTCTTAATTTTTGTT+GGG | + | chr6_4:71004647-71004666 | Msa0995220:intron | 25.0% |
| !!! | ATTCAACAAGTCACTTTTTT+TGG | - | chr6_4:71004970-71004989 | None:intergenic | 25.0% |
| ! | GTTAAAGAGAATGTTAGAAA+GGG | - | chr6_4:71005145-71005164 | None:intergenic | 25.0% |
| ! | TGTTAAAGAGAATGTTAGAA+AGG | - | chr6_4:71005146-71005165 | None:intergenic | 25.0% |
| ! | TGAGAGAATCTACAAATAAT+TGG | + | chr6_4:71005332-71005351 | Msa0995220:intron | 25.0% |
| !! | GCAATATCATATTTTGCAAA+TGG | - | chr6_4:71005403-71005422 | None:intergenic | 25.0% |
| !!! | CTTCTTTAGTGTTATTGTTT+TGG | + | chr6_4:71005493-71005512 | Msa0995220:intron | 25.0% |
| ! | TGTAATTAAACATCACTCAA+GGG | - | chr6_4:71005629-71005648 | None:intergenic | 25.0% |
| !! | TACACCCACTTTATTTAAAA+AGG | + | chr6_4:71005645-71005664 | Msa0995220:intron | 25.0% |
| ! | ATAAAATTGGAGAAATTTGG+AGG | - | chr6_4:71005761-71005780 | None:intergenic | 25.0% |
| ! | AGTTGGATTTAAAAAACTTG+AGG | + | chr6_4:71005810-71005829 | Msa0995220:intron | 25.0% |
| ! | CAAATCATTATGTCAAATTC+AGG | + | chr6_4:71005974-71005993 | Msa0995220:intron | 25.0% |
| ! | AAGTCTTCGAAATCTTATAA+TGG | + | chr6_4:71006028-71006047 | Msa0995220:CDS | 25.0% |
| ! | AGTCTTCGAAATCTTATAAT+GGG | + | chr6_4:71006029-71006048 | Msa0995220:CDS | 25.0% |
| ! | TGATAAAAGAATTGATGTAG+TGG | - | chr6_4:71006069-71006088 | None:intergenic | 25.0% |
| !!! | AAGAAGTGTCACATATTTTA+GGG | - | chr6_4:71006183-71006202 | None:intergenic | 25.0% |
| !!! | TAAGAAGTGTCACATATTTT+AGG | - | chr6_4:71006184-71006203 | None:intergenic | 25.0% |
| ! | AATCACATTCAAATAATCAG+GGG | - | chr6_4:71006309-71006328 | None:intergenic | 25.0% |
| GGAATGGAAGACATATTATT+TGG | + | chr6_4:71003558-71003577 | Msa0995220:CDS | 30.0% | |
| ATATGATGCTTGTACCATTA+GGG | + | chr6_4:71003581-71003600 | Msa0995220:CDS | 30.0% | |
| ! | TGACTATTGGTTATCATGTA+TGG | + | chr6_4:71003611-71003630 | Msa0995220:CDS | 30.0% |
| GTATTCAATTACCTTCAACA+TGG | - | chr6_4:71003716-71003735 | None:intergenic | 30.0% | |
| !! | CAAAACATATTTTTCGATGG+TGG | + | chr6_4:71003799-71003818 | Msa0995220:intron | 30.0% |
| AATTGAGTACTAAGGAGTTT+AGG | - | chr6_4:71003914-71003933 | None:intergenic | 30.0% | |
| AAGTATATGGACAGAAAAGT+TGG | - | chr6_4:71003969-71003988 | None:intergenic | 30.0% | |
| GGAAAGAAAAATCAAAGAGT+TGG | - | chr6_4:71004043-71004062 | None:intergenic | 30.0% | |
| AGACTTTGTTAGATTCAGAT+AGG | + | chr6_4:71004100-71004119 | Msa0995220:intron | 30.0% | |
| ! | GTTGTTAACTTGATTAGAGA+TGG | - | chr6_4:71004331-71004350 | None:intergenic | 30.0% |
| AGCCCAACAAAAATTAAGAA+TGG | - | chr6_4:71004652-71004671 | None:intergenic | 30.0% | |
| AATGAGACTCTACACTTAAT+GGG | - | chr6_4:71005108-71005127 | None:intergenic | 30.0% | |
| TAATGAGACTCTACACTTAA+TGG | - | chr6_4:71005109-71005128 | None:intergenic | 30.0% | |
| TACAAATAATTGGATTCCCT+AGG | + | chr6_4:71005342-71005361 | Msa0995220:intron | 30.0% | |
| GTAATTAAACATCACTCAAG+GGG | - | chr6_4:71005628-71005647 | None:intergenic | 30.0% | |
| GTGTAATTAAACATCACTCA+AGG | - | chr6_4:71005630-71005649 | None:intergenic | 30.0% | |
| ! | ACATCAATTCTTTTATCAGC+TGG | + | chr6_4:71006071-71006090 | Msa0995220:CDS | 30.0% |
| ! | ATAAGTACTGCTTATGATAG+CGG | - | chr6_4:71006102-71006121 | None:intergenic | 30.0% |
| !! | TTGAATGTGATTTTAGAGAG+AGG | + | chr6_4:71006317-71006336 | Msa0995220:CDS | 30.0% |
| GATATGATGCTTGTACCATT+AGG | + | chr6_4:71003580-71003599 | Msa0995220:CDS | 35.0% | |
| ATAGTCATCAGAAACCCTAA+TGG | - | chr6_4:71003598-71003617 | None:intergenic | 35.0% | |
| TTAGGGTTTCTGATGACTAT+TGG | + | chr6_4:71003598-71003617 | Msa0995220:CDS | 35.0% | |
| TTGGTTATCATGTATGGTTG+TGG | + | chr6_4:71003617-71003636 | Msa0995220:CDS | 35.0% | |
| !!! | GAGCCTTTTTCAACTACAAT+TGG | + | chr6_4:71003655-71003674 | Msa0995220:CDS | 35.0% |
| TCAATTACCTTCAACATGGT+AGG | - | chr6_4:71003712-71003731 | None:intergenic | 35.0% | |
| TTCATTGACGAATTAACAGG+TGG | - | chr6_4:71004081-71004100 | None:intergenic | 35.0% | |
| GTCTTCATTGACGAATTAAC+AGG | - | chr6_4:71004084-71004103 | None:intergenic | 35.0% | |
| TTCTATCGGATGAAATTACG+TGG | - | chr6_4:71005247-71005266 | None:intergenic | 35.0% | |
| ACCTTTGACCACAATAATGT+AGG | + | chr6_4:71005377-71005396 | Msa0995220:intron | 35.0% | |
| !! | TGCCACTTTCATTCAAAAAG+AGG | + | chr6_4:71005420-71005439 | Msa0995220:intron | 35.0% |
| ! | GCCACTTTCATTCAAAAAGA+GGG | + | chr6_4:71005421-71005440 | Msa0995220:intron | 35.0% |
| ! | ACCCTCTTTTTGAATGAAAG+TGG | - | chr6_4:71005425-71005444 | None:intergenic | 35.0% |
| ! | TATAATGGGATCGACACTTA+TGG | + | chr6_4:71006043-71006062 | Msa0995220:CDS | 35.0% |
| GAAACCTAATTGAAAGACTG+TGG | - | chr6_4:71006232-71006251 | None:intergenic | 35.0% | |
| CCAAATATCCAAAGCAAAAG+TGG | - | chr6_4:71006389-71006408 | None:intergenic | 35.0% | |
| !! | CCACTTTTGCTTTGGATATT+TGG | + | chr6_4:71006386-71006405 | Msa0995220:CDS | 35.0% |
| !!! | CTTGGTTTTATTGTGCTCTT+TGG | + | chr6_4:71006415-71006434 | Msa0995220:CDS | 35.0% |
| TACAACCTTGACATTGTTTG+TGG | + | chr6_4:71006455-71006474 | Msa0995220:CDS | 35.0% | |
| ACAACCTTGACATTGTTTGT+GGG | + | chr6_4:71006456-71006475 | Msa0995220:CDS | 35.0% | |
| TATGGTTGTGGCATAAGACT+CGG | + | chr6_4:71003629-71003648 | Msa0995220:CDS | 40.0% | |
| ! | ATGCTCATGCTAGACGATTT+TGG | + | chr6_4:71003683-71003702 | Msa0995220:CDS | 40.0% |
| ! | TGCTCATGCTAGACGATTTT+GGG | + | chr6_4:71003684-71003703 | Msa0995220:CDS | 40.0% |
| !! | ACATATTTTTCGATGGTGGC+CGG | + | chr6_4:71003803-71003822 | Msa0995220:intron | 40.0% |
| AAGATTCAGGGTTCAAACTC+CGG | - | chr6_4:71003825-71003844 | None:intergenic | 40.0% | |
| ACTCGTGAACTTAACTCAGT+TGG | - | chr6_4:71003871-71003890 | None:intergenic | 40.0% | |
| TTTCTAGATCCATCTCTGTC+TGG | - | chr6_4:71004156-71004175 | None:intergenic | 40.0% | |
| TACATAGGTGACCGACATTT+CGG | + | chr6_4:71004296-71004315 | Msa0995220:intron | 40.0% | |
| GGATATAGTGACCGAAATGT+CGG | - | chr6_4:71004310-71004329 | None:intergenic | 40.0% | |
| AACCTATGTAAGTCTTGGTG+TGG | - | chr6_4:71004436-71004455 | None:intergenic | 40.0% | |
| ATTATTAGACCTGAAGGCAG+GGG | - | chr6_4:71004461-71004480 | None:intergenic | 40.0% | |
| GATTATTAGACCTGAAGGCA+GGG | - | chr6_4:71004462-71004481 | None:intergenic | 40.0% | |
| TGATTATTAGACCTGAAGGC+AGG | - | chr6_4:71004463-71004482 | None:intergenic | 40.0% | |
| ! | ACGACATCTTTTGTCGTGTA+AGG | - | chr6_4:71005005-71005024 | None:intergenic | 40.0% |
| GCCTACATTATTGTGGTCAA+AGG | - | chr6_4:71005381-71005400 | None:intergenic | 40.0% | |
| GCAAATGGCCTACATTATTG+TGG | - | chr6_4:71005388-71005407 | None:intergenic | 40.0% | |
| TGTAGACCTATAGGGTACAA+TGG | + | chr6_4:71005890-71005909 | Msa0995220:intron | 40.0% | |
| TCTGCCACAGTCTTTCAATT+AGG | + | chr6_4:71006225-71006244 | Msa0995220:CDS | 40.0% | |
| TGCAGATAAGGAGGCTTAAT+TGG | - | chr6_4:71006259-71006278 | None:intergenic | 40.0% | |
| !! | ACCACAAGATGCTATTTCCT+TGG | + | chr6_4:71006280-71006299 | Msa0995220:CDS | 40.0% |
| ACCAAGGAAATAGCATCTTG+TGG | - | chr6_4:71006284-71006303 | None:intergenic | 40.0% | |
| AGGAACTACTTTGAACACTG+TGG | + | chr6_4:71006337-71006356 | Msa0995220:CDS | 40.0% | |
| GGAACTACTTTGAACACTGT+GGG | + | chr6_4:71006338-71006357 | Msa0995220:CDS | 40.0% | |
| GAACTACTTTGAACACTGTG+GGG | + | chr6_4:71006339-71006358 | Msa0995220:CDS | 40.0% | |
| TTGGATATTTGGTCCAGTCT+TGG | + | chr6_4:71006397-71006416 | Msa0995220:CDS | 40.0% | |
| GAGCACAATAAAACCAAGAC+TGG | - | chr6_4:71006413-71006432 | None:intergenic | 40.0% | |
| TTGGGTTCCTACCATGTTGA+AGG | + | chr6_4:71003702-71003721 | Msa0995220:CDS | 45.0% | |
| AGCCACACCAAGACTTACAT+AGG | + | chr6_4:71004431-71004450 | Msa0995220:intron | 45.0% | |
| GGGCAAACCTATGTAAGTCT+TGG | - | chr6_4:71004441-71004460 | None:intergenic | 45.0% | |
| AGGTACCAAAGCAAAGCCTA+GGG | - | chr6_4:71005361-71005380 | None:intergenic | 45.0% | |
| ! | AAGGTACCAAAGCAAAGCCT+AGG | - | chr6_4:71005362-71005381 | None:intergenic | 45.0% |
| CCATTGCCATTGTACCCTAT+AGG | - | chr6_4:71005899-71005918 | None:intergenic | 45.0% | |
| CCTATAGGGTACAATGGCAA+TGG | + | chr6_4:71005896-71005915 | Msa0995220:intron | 45.0% | |
| CCATAGAGAACATCGTCAAG+AGG | - | chr6_4:71006137-71006156 | None:intergenic | 45.0% | |
| CCTCTTGACGATGTTCTCTA+TGG | + | chr6_4:71006134-71006153 | Msa0995220:CDS | 45.0% | |
| CATCTTGTGGTGTGCAGATA+AGG | - | chr6_4:71006271-71006290 | None:intergenic | 45.0% | |
| CAAATAATCAGGGGTCACCA+AGG | - | chr6_4:71006300-71006319 | None:intergenic | 45.0% | |
| CTTTGAACACTGTGGGGAAT+AGG | + | chr6_4:71006345-71006364 | Msa0995220:CDS | 45.0% | |
| !! | CTGCTCTTCCACTTTTGCTT+TGG | + | chr6_4:71006378-71006397 | Msa0995220:CDS | 45.0% |
| CACTCCCACAAACAATGTCA+AGG | - | chr6_4:71006463-71006482 | None:intergenic | 45.0% | |
| CTTGACATTGTTTGTGGGAG+TGG | + | chr6_4:71006461-71006480 | Msa0995220:CDS | 45.0% | |
| !!! | TTCTATTTTTTAATAAATTA+TGG | + | chr6_4:71004399-71004418 | Msa0995220:intron | 5.0% |
| !! | ATATAGAAATAAAATAAAAT+TGG | - | chr6_4:71005774-71005793 | None:intergenic | 5.0% |
| ! | AGGTGGAGTAGCTTGAGTTG+TGG | - | chr6_4:71004064-71004083 | None:intergenic | 50.0% |
| CTAGATCCATCTCTGTCTGG+AGG | - | chr6_4:71004153-71004172 | None:intergenic | 50.0% | |
| AGCACGACTCACACACAACA+AGG | + | chr6_4:71004897-71004916 | Msa0995220:intron | 50.0% | |
| GGATTCCCTAGGCTTTGCTT+TGG | + | chr6_4:71005353-71005372 | Msa0995220:intron | 50.0% | |
| GATGTTCTCTATGGCGCTCA+CGG | + | chr6_4:71006143-71006162 | Msa0995220:CDS | 50.0% | |
| CTTGTGGTGTGCAGATAAGG+AGG | - | chr6_4:71006268-71006287 | None:intergenic | 50.0% | |
| TCTCTGTCTGGAGGCTGACT+AGG | - | chr6_4:71004144-71004163 | None:intergenic | 55.0% | |
| AGTCAGCCTCCAGACAGAGA+TGG | + | chr6_4:71004144-71004163 | Msa0995220:intron | 55.0% | |
| ATAGGTTTGCCCCTGCCTTC+AGG | + | chr6_4:71004449-71004468 | Msa0995220:intron | 55.0% | |
| TGGCGCTCACGGCGAATTTA+TGG | + | chr6_4:71006154-71006173 | Msa0995220:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 71003507 | 71006562 | 71003507 | ID=Msa0995220;Name=Msa0995220 |
| chr6_4 | mRNA | 71003507 | 71006562 | 71003507 | ID=Msa0995220-mRNA-1;Parent=Msa0995220;Name=Msa0995220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=49|1|1|1|1|1|2|36|232 |
| chr6_4 | exon | 71003507 | 71003723 | 71003507 | ID=Msa0995220-mRNA-1:exon:13217;Parent=Msa0995220-mRNA-1 |
| chr6_4 | exon | 71005996 | 71006562 | 71005996 | ID=Msa0995220-mRNA-1:exon:13218;Parent=Msa0995220-mRNA-1 |
| chr6_4 | five_prime_UTR | 71003507 | 71003555 | 71003507 | ID=Msa0995220-mRNA-1:five_prime_utr;Parent=Msa0995220-mRNA-1 |
| chr6_4 | CDS | 71003556 | 71003723 | 71003556 | ID=Msa0995220-mRNA-1:cds;Parent=Msa0995220-mRNA-1 |
| chr6_4 | CDS | 71005996 | 71006526 | 71005996 | ID=Msa0995220-mRNA-1:cds;Parent=Msa0995220-mRNA-1 |
| chr6_4 | three_prime_UTR | 71006527 | 71006562 | 71006527 | ID=Msa0995220-mRNA-1:three_prime_utr;Parent=Msa0995220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
