Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921080 | XP_013442974.1 | 92.713 | 247 | 3 | 1 | 1 | 247 | 1 | 232 | 6.78e-162 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034310 | Msa0921080 | -0.831687 | 1.449249e-55 | -8.615850e-47 |
| Msa0081310 | Msa0921080 | -0.815846 | 7.499634e-52 | -8.615850e-47 |
| Msa0640380 | Msa0921080 | 0.830046 | 3.660214e-55 | -8.615850e-47 |
| Msa0722930 | Msa0921080 | 0.827726 | 1.333963e-54 | -8.615850e-47 |
| Msa0723140 | Msa0921080 | 0.821176 | 4.640645e-53 | -8.615850e-47 |
| Msa0173620 | Msa0921080 | -0.814567 | 1.442706e-51 | -8.615850e-47 |
| Msa0411000 | Msa0921080 | 0.814979 | 1.169297e-51 | -8.615850e-47 |
| Msa0455230 | Msa0921080 | 0.825003 | 5.939581e-54 | -8.615850e-47 |
| Msa0295850 | Msa0921080 | 0.805048 | 1.610806e-49 | -8.615850e-47 |
| Msa0363460 | Msa0921080 | 0.824090 | 9.743279e-54 | -8.615850e-47 |
| Msa0563140 | Msa0921080 | 0.818031 | 2.423208e-52 | -8.615850e-47 |
| Msa0843280 | Msa0921080 | 0.807557 | 4.769548e-50 | -8.615850e-47 |
| Msa0894500 | Msa0921080 | 0.847649 | 1.011735e-59 | -8.615850e-47 |
| Msa0900200 | Msa0921080 | 0.832756 | 7.883612e-56 | -8.615850e-47 |
| Msa0921080 | Msa0951720 | 0.824822 | 6.555185e-54 | -8.615850e-47 |
| Msa0921080 | Msa0959610 | 0.805967 | 1.033791e-49 | -8.615850e-47 |
| Msa0921080 | Msa0965520 | 0.816682 | 4.876314e-52 | -8.615850e-47 |
| Msa0921080 | Msa0995220 | 0.823908 | 1.075014e-53 | -8.615850e-47 |
| Msa0921080 | Msa1000020 | 0.834122 | 3.598257e-56 | -8.615850e-47 |
| Msa0921080 | Msa1002990 | -0.816291 | 5.966355e-52 | -8.615850e-47 |
| Msa0921080 | Msa1080790 | 0.857980 | 1.127526e-62 | -8.615850e-47 |
| Msa0921080 | Msa1118930 | 0.856132 | 3.954943e-62 | -8.615850e-47 |
| Msa0921080 | Msa1132950 | 0.807697 | 4.453470e-50 | -8.615850e-47 |
| Msa0921080 | Msa1141250 | -0.824136 | 9.505503e-54 | -8.615850e-47 |
| Msa0921080 | Msa1203360 | 0.804197 | 2.424972e-49 | -8.615850e-47 |
| Msa0921080 | Msa1237260 | 0.801556 | 8.516256e-49 | -8.615850e-47 |
| Msa0921080 | Msa1370630 | 0.841248 | 5.330062e-58 | -8.615850e-47 |
| Msa0921080 | Msa1412760 | -0.808539 | 2.947337e-50 | -8.615850e-47 |
| Msa0921080 | Msa1416470 | -0.816955 | 4.234957e-52 | -8.615850e-47 |
| Msa0921080 | Msa1449670 | -0.834321 | 3.207448e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921080 | MtrunA17_Chr6g0477471 | 92.713 | 247 | 3 | 1 | 1 | 247 | 1 | 232 | 6.24e-166 | 457 |
| Msa0921080 | MtrunA17_Chr1g0188581 | 68.651 | 252 | 59 | 4 | 1 | 247 | 1 | 237 | 6.04e-123 | 349 |
| Msa0921080 | MtrunA17_Chr1g0147511 | 65.182 | 247 | 71 | 1 | 1 | 247 | 1 | 232 | 1.89e-115 | 330 |
| Msa0921080 | MtrunA17_Chr3g0139261 | 68.936 | 235 | 58 | 1 | 1 | 235 | 1 | 220 | 6.25e-114 | 326 |
| Msa0921080 | MtrunA17_Chr6g0477661 | 55.794 | 233 | 88 | 1 | 1 | 233 | 1 | 218 | 4.18e-91 | 268 |
| Msa0921080 | MtrunA17_Chr6g0477681 | 50.202 | 247 | 105 | 2 | 1 | 247 | 1 | 229 | 6.98e-84 | 250 |
| Msa0921080 | MtrunA17_Chr5g0428761 | 33.610 | 241 | 138 | 3 | 8 | 242 | 6 | 230 | 3.00e-43 | 147 |
| Msa0921080 | MtrunA17_Chr8g0392461 | 33.484 | 221 | 127 | 1 | 8 | 228 | 6 | 206 | 9.25e-34 | 121 |
| Msa0921080 | MtrunA17_Chr7g0244961 | 33.913 | 230 | 122 | 3 | 7 | 230 | 43 | 248 | 1.88e-26 | 103 |
| Msa0921080 | MtrunA17_Chr8g0392481 | 45.122 | 82 | 45 | 0 | 7 | 88 | 6 | 87 | 7.63e-17 | 73.9 |
| Msa0921080 | MtrunA17_Chr2g0282971 | 31.746 | 189 | 108 | 6 | 40 | 227 | 1 | 169 | 2.14e-14 | 69.7 |
| Msa0921080 | MtrunA17_Chr8g0392471 | 30.286 | 175 | 97 | 3 | 56 | 228 | 98 | 249 | 1.46e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921080 | AT4G31330.1 | 57.540 | 252 | 85 | 3 | 1 | 246 | 1 | 236 | 1.08e-98 | 288 |
| Msa0921080 | AT5G10580.3 | 57.143 | 238 | 79 | 2 | 1 | 230 | 1 | 223 | 2.25e-92 | 272 |
| Msa0921080 | AT5G10580.1 | 57.143 | 238 | 79 | 2 | 1 | 230 | 1 | 223 | 2.85e-92 | 272 |
| Msa0921080 | AT5G10580.4 | 57.143 | 238 | 79 | 2 | 1 | 230 | 1 | 223 | 2.85e-92 | 272 |
| Msa0921080 | AT5G10580.2 | 55.000 | 200 | 67 | 2 | 1 | 192 | 1 | 185 | 7.28e-74 | 223 |
| Msa0921080 | AT5G24790.1 | 49.597 | 248 | 104 | 3 | 1 | 242 | 1 | 233 | 1.14e-72 | 222 |
| Msa0921080 | AT5G24600.1 | 32.157 | 255 | 142 | 4 | 4 | 245 | 2 | 238 | 2.09e-38 | 134 |
| Msa0921080 | AT5G24600.2 | 33.054 | 239 | 129 | 4 | 4 | 229 | 2 | 222 | 4.84e-37 | 130 |
| Msa0921080 | AT3G18215.1 | 31.858 | 226 | 139 | 1 | 3 | 228 | 2 | 212 | 7.38e-34 | 122 |
| Msa0921080 | AT5G43180.1 | 31.466 | 232 | 135 | 3 | 9 | 228 | 8 | 227 | 1.53e-28 | 108 |
| Msa0921080 | AT5G46060.1 | 30.222 | 225 | 140 | 2 | 4 | 228 | 6 | 213 | 2.05e-15 | 73.9 |
| Msa0921080 | AT3G18215.2 | 28.387 | 155 | 96 | 1 | 74 | 228 | 1 | 140 | 2.68e-13 | 66.6 |
Find 47 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTCATGCTAGACGATTT+TGG | 0.136780 | 6_2:+57397153 | Msa0921080:CDS |
| TGGCGCTCACGGCGAATTTA+TGG | 0.137886 | 6_2:+57399500 | Msa0921080:CDS |
| GGAATGGAAGCCATATTATT+TGG | 0.201750 | 6_2:+57397028 | Msa0921080:CDS |
| ATTCCAATTGTAGTTGAAAA+AGG | 0.214511 | 6_2:-57397128 | None:intergenic |
| CATCTTGTGGTGTGCATATA+AGG | 0.247426 | 6_2:-57399614 | None:intergenic |
| AAGTCTTCGAAATCTTATAA+TGG | 0.287193 | 6_2:+57398992 | Msa0921080:CDS |
| AAAATCACATTCAAATAATC+AGG | 0.291282 | 6_2:-57399654 | None:intergenic |
| CTTTGAACACTGTGGGGAAT+AGG | 0.316144 | 6_2:+57399691 | Msa0921080:CDS |
| TTAGGGTTTCTGATGACTAT+TGG | 0.325997 | 6_2:+57397068 | Msa0921080:CDS |
| AGCATCATATCCAAATAATA+TGG | 0.327967 | 6_2:-57397038 | None:intergenic |
| TCTGCCACAGTCTTTCAATT+AGG | 0.330602 | 6_2:+57399571 | Msa0921080:CDS |
| GATATGATGCTTGTACCATT+AGG | 0.338920 | 6_2:+57397050 | Msa0921080:CDS |
| CCTCTTGACGATGTTCTCTA+TGG | 0.359450 | 6_2:+57399480 | Msa0921080:CDS |
| ATATGATGCTTGTACCATTA+GGG | 0.359675 | 6_2:+57397051 | Msa0921080:CDS |
| AGTCTTCGAAATCTTATAAT+GGG | 0.385770 | 6_2:+57398993 | Msa0921080:CDS |
| TATAATGGGATCGACACTTA+TGG | 0.386282 | 6_2:+57399007 | Msa0921080:CDS |
| TTGGATATTTGGTCCAGTCT+TGG | 0.409834 | 6_2:+57399743 | Msa0921080:CDS |
| CTTGACATTGTTTGTGGGAG+TGG | 0.411478 | 6_2:+57399807 | Msa0921080:CDS |
| CCAAATATCCAAAGCAAAAG+TGG | 0.434862 | 6_2:-57399732 | None:intergenic |
| TATAACCTTGACATTGTTTG+TGG | 0.439004 | 6_2:+57399801 | Msa0921080:CDS |
| TGACTATTGGTTATCATGTA+TGG | 0.440284 | 6_2:+57397081 | Msa0921080:CDS |
| ACCACAAGATGCTATTTCCT+TGG | 0.447435 | 6_2:+57399626 | Msa0921080:CDS |
| TGCATATAAGGAGACTTAAC+TGG | 0.458658 | 6_2:-57399602 | None:intergenic |
| TTGGGTTCCTACCATGTTGA+AGG | 0.462529 | 6_2:+57397172 | Msa0921080:CDS |
| ACATCAATTCTCTTATCAGC+TGG | 0.497240 | 6_2:+57399035 | Msa0921080:CDS |
| GAGCACAATAAAACCAAGAC+TGG | 0.525087 | 6_2:-57399756 | None:intergenic |
| ATAGTCATCAGAAACCCTAA+TGG | 0.529052 | 6_2:-57397065 | None:intergenic |
| AAATCACATTCAAATAATCA+GGG | 0.535411 | 6_2:-57399653 | None:intergenic |
| ATAACCTTGACATTGTTTGT+GGG | 0.538431 | 6_2:+57399802 | Msa0921080:CDS |
| TAAACAAATTGATGATGGAA+TGG | 0.551652 | 6_2:+57397012 | None:intergenic |
| GGAACTACTTTGAACACTGT+GGG | 0.559223 | 6_2:+57399684 | Msa0921080:CDS |
| TTGGTTATCATGTATGGTTG+TGG | 0.598003 | 6_2:+57397087 | Msa0921080:CDS |
| TCAATTACCTTCAACATGGT+AGG | 0.603310 | 6_2:-57397179 | None:intergenic |
| CACTCCCACAAACAATGTCA+AGG | 0.603675 | 6_2:-57399806 | None:intergenic |
| GATGTTCTCTATGGCGCTCA+CGG | 0.610577 | 6_2:+57399489 | Msa0921080:CDS |
| ATAAGTGCTGCTTATGATAG+CGG | 0.612101 | 6_2:-57399063 | None:intergenic |
| CCATAGAGAACATCGTCAAG+AGG | 0.618071 | 6_2:-57399480 | None:intergenic |
| TGATAAGAGAATTGATGTAG+TGG | 0.631774 | 6_2:-57399030 | None:intergenic |
| TATGGTTGTGGCATAAGACT+CGG | 0.641131 | 6_2:+57397099 | Msa0921080:CDS |
| CAAATAATCAGGGGTCACCA+AGG | 0.644463 | 6_2:-57399643 | None:intergenic |
| ACCAAGGAAATAGCATCTTG+TGG | 0.646155 | 6_2:-57399627 | None:intergenic |
| GAAACCTAATTGAAAGACTG+TGG | 0.655096 | 6_2:-57399575 | None:intergenic |
| AATCACATTCAAATAATCAG+GGG | 0.662315 | 6_2:-57399652 | None:intergenic |
| TTTCACACTATAAGCAGGGG+CGG | 0.678674 | 6_2:-57399454 | None:intergenic |
| TAATTCAATTACCTTCAACA+TGG | 0.683424 | 6_2:-57397183 | None:intergenic |
| AGGAACTACTTTGAACACTG+TGG | 0.685779 | 6_2:+57399683 | Msa0921080:CDS |
| GAACTACTTTGAACACTGTG+GGG | 0.711042 | 6_2:+57399685 | Msa0921080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCAAATTTTTCAAAT+TGG | - | chr6_2:57398003-57398022 | None:intergenic | 10.0% |
| !! | TTGAAAAATTTGAAAATTTA+AGG | + | chr6_2:57398005-57398024 | Msa0921080:intron | 10.0% |
| !!! | ATGAATTTTGAAAATTTAAA+AGG | + | chr6_2:57398036-57398055 | Msa0921080:intron | 10.0% |
| !!! | AAAAAGTTGAATTTTTAAAT+TGG | - | chr6_2:57398124-57398143 | None:intergenic | 10.0% |
| !! | TTCTAAATTGATATATTTAA+GGG | - | chr6_2:57398231-57398250 | None:intergenic | 10.0% |
| !! | ATTCTAAATTGATATATTTA+AGG | - | chr6_2:57398232-57398251 | None:intergenic | 10.0% |
| !!! | CTTTAAAATAAAAAAGAAAA+AGG | + | chr6_2:57398374-57398393 | Msa0921080:intron | 10.0% |
| !!! | TTTATATCTTTCTTTTTAAT+TGG | - | chr6_2:57398453-57398472 | None:intergenic | 10.0% |
| !! | ATATATATTCTTCAAATATT+TGG | - | chr6_2:57399126-57399145 | None:intergenic | 10.0% |
| !! | AGAATTATAAAAAGATAAAA+AGG | + | chr6_2:57399279-57399298 | Msa0921080:intron | 10.0% |
| !! | TATGAAATTTATATATAAAC+TGG | + | chr6_2:57399396-57399415 | Msa0921080:intron | 10.0% |
| !! | ATGAAATTTATATATAAACT+GGG | + | chr6_2:57399397-57399416 | Msa0921080:intron | 10.0% |
| !!! | ATTATTTTTTTGGTAAAAGT+TGG | - | chr6_2:57397382-57397401 | None:intergenic | 15.0% |
| !!! | GGTGATTAATATTATTTTTT+TGG | - | chr6_2:57397392-57397411 | None:intergenic | 15.0% |
| !! | AATTTCAGAATTTGAAAAAT+AGG | + | chr6_2:57397976-57397995 | Msa0921080:intron | 15.0% |
| !! | ACAATTTGTGAAAATTTATA+GGG | + | chr6_2:57398067-57398086 | Msa0921080:intron | 15.0% |
| !!! | ATTTTCAAAATTTTACACAT+CGG | - | chr6_2:57398094-57398113 | None:intergenic | 15.0% |
| !!! | GTGTAAAATTTTGAAAATAT+AGG | + | chr6_2:57398096-57398115 | Msa0921080:intron | 15.0% |
| !!! | TGTAAGTTTTAATATAAAAG+AGG | - | chr6_2:57398488-57398507 | None:intergenic | 15.0% |
| !!! | AGTTACTTTTTAAATAAAGT+GGG | - | chr6_2:57398576-57398595 | None:intergenic | 15.0% |
| !!! | TAGTTACTTTTTAAATAAAG+TGG | - | chr6_2:57398577-57398596 | None:intergenic | 15.0% |
| !! | AATCAAATTATAATTGATTG+TGG | - | chr6_2:57398764-57398783 | None:intergenic | 15.0% |
| !!! | AATTTGATTTAAAAAACTTG+AGG | + | chr6_2:57398775-57398794 | Msa0921080:intron | 15.0% |
| !! | ATTATAAAAAGATAAAAAGG+TGG | + | chr6_2:57399282-57399301 | Msa0921080:intron | 15.0% |
| !! | TTATAAAAAGATAAAAAGGT+GGG | + | chr6_2:57399283-57399302 | Msa0921080:intron | 15.0% |
| !! | TGAAATTTATATATAAACTG+GGG | + | chr6_2:57399398-57399417 | Msa0921080:intron | 15.0% |
| !! | ATATTTAATAATTGAGCACT+AGG | - | chr6_2:57397292-57397311 | None:intergenic | 20.0% |
| !!! | AATTACTTTTAGAGTGTTTT+TGG | + | chr6_2:57397893-57397912 | Msa0921080:intron | 20.0% |
| !!! | ATTACTTTTAGAGTGTTTTT+GGG | + | chr6_2:57397894-57397913 | Msa0921080:intron | 20.0% |
| !! | CACAATTTGTGAAAATTTAT+AGG | + | chr6_2:57398066-57398085 | Msa0921080:intron | 20.0% |
| !! | TTAATTTAACATCACTCAAT+GGG | - | chr6_2:57398552-57398571 | None:intergenic | 20.0% |
| !!! | TTTAATTTAACATCACTCAA+TGG | - | chr6_2:57398553-57398572 | None:intergenic | 20.0% |
| !!! | CATTTAGTTTGTTTTATGTA+TGG | - | chr6_2:57398809-57398828 | None:intergenic | 20.0% |
| !!! | TATTTTTATGTAGACCTATA+GGG | + | chr6_2:57398846-57398865 | Msa0921080:intron | 20.0% |
| !! | GAAATTTATATATAAACTGG+GGG | + | chr6_2:57399399-57399418 | Msa0921080:intron | 20.0% |
| !! | AAATTTATATATAAACTGGG+GGG | + | chr6_2:57399400-57399419 | Msa0921080:intron | 20.0% |
| !! | GAAAAATGAGAATAAGAATA+TGG | - | chr6_2:57399553-57399572 | None:intergenic | 20.0% |
| !! | AAATCACATTCAAATAATCA+GGG | - | chr6_2:57399656-57399675 | None:intergenic | 20.0% |
| !! | AAAATCACATTCAAATAATC+AGG | - | chr6_2:57399657-57399676 | None:intergenic | 20.0% |
| ! | AGCATCATATCCAAATAATA+TGG | - | chr6_2:57397041-57397060 | None:intergenic | 25.0% |
| ! | ATTCCAATTGTAGTTGAAAA+AGG | - | chr6_2:57397131-57397150 | None:intergenic | 25.0% |
| ! | TAATTCAATTACCTTCAACA+TGG | - | chr6_2:57397186-57397205 | None:intergenic | 25.0% |
| ! | CTATGAGTAATAAGGATAAA+GGG | - | chr6_2:57397248-57397267 | None:intergenic | 25.0% |
| ! | ACTATGAGTAATAAGGATAA+AGG | - | chr6_2:57397249-57397268 | None:intergenic | 25.0% |
| !!! | TGTTTTGACTATGAGTAATA+AGG | - | chr6_2:57397256-57397275 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGTATTGAGGA+GGG | - | chr6_2:57397619-57397638 | None:intergenic | 25.0% |
| ! | AATCAAAAATTGTATTGAGG+AGG | - | chr6_2:57397620-57397639 | None:intergenic | 25.0% |
| ! | AGACTTTGTTAGATTTAGAT+AGG | + | chr6_2:57397823-57397842 | Msa0921080:intron | 25.0% |
| !! | ACTAGAAATCCAATTTTTGT+TGG | + | chr6_2:57397940-57397959 | Msa0921080:intron | 25.0% |
| !! | CTAGAAATCCAATTTTTGTT+GGG | + | chr6_2:57397941-57397960 | Msa0921080:intron | 25.0% |
| !! | GATATATTTAAGGGTATACA+TGG | - | chr6_2:57398222-57398241 | None:intergenic | 25.0% |
| ! | TGAGAGAATCTAGATATAAT+TGG | + | chr6_2:57398258-57398277 | Msa0921080:intron | 25.0% |
| ! | TATAAAAGAGGTTAAAAGTG+TGG | - | chr6_2:57398476-57398495 | None:intergenic | 25.0% |
| !!! | CTATTTTTATGTAGACCTAT+AGG | + | chr6_2:57398845-57398864 | Msa0921080:intron | 25.0% |
| !! | CAAATCATTTTGTCAAATTC+AGG | + | chr6_2:57398938-57398957 | Msa0921080:intron | 25.0% |
| ! | AAGTCTTCGAAATCTTATAA+TGG | + | chr6_2:57398992-57399011 | Msa0921080:CDS | 25.0% |
| ! | AGTCTTCGAAATCTTATAAT+GGG | + | chr6_2:57398993-57399012 | Msa0921080:CDS | 25.0% |
| ! | AAATGTACAACATTGTTATG+TGG | + | chr6_2:57399162-57399181 | Msa0921080:intron | 25.0% |
| ! | TTATTCACAAAAAAAAGACC+TGG | - | chr6_2:57399241-57399260 | None:intergenic | 25.0% |
| ! | AATCACATTCAAATAATCAG+GGG | - | chr6_2:57399655-57399674 | None:intergenic | 25.0% |
| ATATGATGCTTGTACCATTA+GGG | + | chr6_2:57397051-57397070 | Msa0921080:CDS | 30.0% | |
| ! | TGACTATTGGTTATCATGTA+TGG | + | chr6_2:57397081-57397100 | Msa0921080:CDS | 30.0% |
| ! | TCCAATTTTTCTGTTCCATA+TGG | + | chr6_2:57397334-57397353 | Msa0921080:intron | 30.0% |
| ACCATATGGAACAGAAAAAT+TGG | - | chr6_2:57397338-57397357 | None:intergenic | 30.0% | |
| TTGAAAAAATGAGCACCATA+TGG | - | chr6_2:57397352-57397371 | None:intergenic | 30.0% | |
| GGGAATCAAAAATTGTATTG+AGG | - | chr6_2:57397623-57397642 | None:intergenic | 30.0% | |
| !! | AATTTTTGATTCCCCAAATG+AGG | + | chr6_2:57397629-57397648 | Msa0921080:intron | 30.0% |
| ATACAAAACTCTCCTCATTT+GGG | - | chr6_2:57397644-57397663 | None:intergenic | 30.0% | |
| AAGAAATAGAGGAAAATGAG+AGG | - | chr6_2:57397699-57397718 | None:intergenic | 30.0% | |
| ATGAATAGCCCAACAAAAAT+TGG | - | chr6_2:57397952-57397971 | None:intergenic | 30.0% | |
| GCACAAGATTAGAAAATGAA+TGG | - | chr6_2:57398172-57398191 | None:intergenic | 30.0% | |
| ! | AAGGGTATACATGGAAATAT+AGG | - | chr6_2:57398213-57398232 | None:intergenic | 30.0% |
| TAGATATAATTGGATTCCCT+AGG | + | chr6_2:57398268-57398287 | Msa0921080:intron | 30.0% | |
| !! | ATGCCACTTTCATCAAAAAA+GGG | + | chr6_2:57398344-57398363 | Msa0921080:intron | 30.0% |
| !!! | TAACCCTTTTTTGATGAAAG+TGG | - | chr6_2:57398350-57398369 | None:intergenic | 30.0% |
| TGATAAGAGAATTGATGTAG+TGG | - | chr6_2:57399033-57399052 | None:intergenic | 30.0% | |
| !! | TTGAATGTGATTTTAGAGAG+AGG | + | chr6_2:57399663-57399682 | Msa0921080:CDS | 30.0% |
| TATAACCTTGACATTGTTTG+TGG | + | chr6_2:57399801-57399820 | Msa0921080:CDS | 30.0% | |
| ATAACCTTGACATTGTTTGT+GGG | + | chr6_2:57399802-57399821 | Msa0921080:CDS | 30.0% | |
| GGAATGGAAGCCATATTATT+TGG | + | chr6_2:57397028-57397047 | Msa0921080:CDS | 35.0% | |
| GATATGATGCTTGTACCATT+AGG | + | chr6_2:57397050-57397069 | Msa0921080:CDS | 35.0% | |
| ATAGTCATCAGAAACCCTAA+TGG | - | chr6_2:57397068-57397087 | None:intergenic | 35.0% | |
| TTAGGGTTTCTGATGACTAT+TGG | + | chr6_2:57397068-57397087 | Msa0921080:CDS | 35.0% | |
| TTGGTTATCATGTATGGTTG+TGG | + | chr6_2:57397087-57397106 | Msa0921080:CDS | 35.0% | |
| !!! | GAGCCTTTTTCAACTACAAT+TGG | + | chr6_2:57397125-57397144 | Msa0921080:CDS | 35.0% |
| TCAATTACCTTCAACATGGT+AGG | - | chr6_2:57397182-57397201 | None:intergenic | 35.0% | |
| AGTAATAAGGATAAAGGGCA+AGG | - | chr6_2:57397243-57397262 | None:intergenic | 35.0% | |
| AATTGAGCACTAGGAAGTTT+AGG | - | chr6_2:57397283-57397302 | None:intergenic | 35.0% | |
| AAGGGAGAAAGTGAGAAAAA+TGG | + | chr6_2:57397447-57397466 | Msa0921080:intron | 35.0% | |
| ! | GGGGGTTTTCAGAATTTATA+TGG | - | chr6_2:57397591-57397610 | None:intergenic | 35.0% |
| ! | TTGTATTGAGGAGGGTTTTT+GGG | - | chr6_2:57397611-57397630 | None:intergenic | 35.0% |
| ! | ATTGTATTGAGGAGGGTTTT+TGG | - | chr6_2:57397612-57397631 | None:intergenic | 35.0% |
| TACAAAACTCTCCTCATTTG+GGG | - | chr6_2:57397643-57397662 | None:intergenic | 35.0% | |
| GATACAAAACTCTCCTCATT+TGG | - | chr6_2:57397645-57397664 | None:intergenic | 35.0% | |
| !! | ATGAGGAGAGTTTTGTATCA+TGG | + | chr6_2:57397646-57397665 | Msa0921080:intron | 35.0% |
| !! | AAAGGCTTTGTTTGTGAGTT+TGG | - | chr6_2:57397752-57397771 | None:intergenic | 35.0% |
| ! | GTAGTGGAAAGCAAAACTAA+AGG | - | chr6_2:57397770-57397789 | None:intergenic | 35.0% |
| !! | TAACTTCCTAGTTAGCTTGT+AGG | + | chr6_2:57397859-57397878 | Msa0921080:intron | 35.0% |
| ATTAGACCTACAAGCTAACT+AGG | - | chr6_2:57397868-57397887 | None:intergenic | 35.0% | |
| !!! | AGTGTTTTTGGGTGTGTAAT+TGG | + | chr6_2:57397905-57397924 | Msa0921080:intron | 35.0% |
| TACCTTTGACCACAATAATC+AGG | + | chr6_2:57398297-57398316 | Msa0921080:intron | 35.0% | |
| ACCTTTGACCACAATAATCA+GGG | + | chr6_2:57398298-57398317 | Msa0921080:intron | 35.0% | |
| ATGAAAGTCCCTGATTATTG+TGG | - | chr6_2:57398309-57398328 | None:intergenic | 35.0% | |
| !! | CATGCCACTTTCATCAAAAA+AGG | + | chr6_2:57398343-57398362 | Msa0921080:intron | 35.0% |
| ! | TATAATGGGATCGACACTTA+TGG | + | chr6_2:57399007-57399026 | Msa0921080:CDS | 35.0% |
| ACATCAATTCTCTTATCAGC+TGG | + | chr6_2:57399035-57399054 | Msa0921080:CDS | 35.0% | |
| !! | ATAAGTGCTGCTTATGATAG+CGG | - | chr6_2:57399066-57399085 | None:intergenic | 35.0% |
| !!! | CGGATCTTGAGTTTTTTTTC+CGG | + | chr6_2:57399095-57399114 | Msa0921080:intron | 35.0% |
| !!! | GGATCTTGAGTTTTTTTTCC+GGG | + | chr6_2:57399096-57399115 | Msa0921080:intron | 35.0% |
| !!! | GATCTTGAGTTTTTTTTCCG+GGG | + | chr6_2:57399097-57399116 | Msa0921080:intron | 35.0% |
| !!! | ATCTTGAGTTTTTTTTCCGG+GGG | + | chr6_2:57399098-57399117 | Msa0921080:intron | 35.0% |
| AACATTGTTATGTGGTGTAG+TGG | + | chr6_2:57399170-57399189 | Msa0921080:intron | 35.0% | |
| ! | AATTTTGCCTGACTGATACA+TGG | + | chr6_2:57399194-57399213 | Msa0921080:intron | 35.0% |
| ! | ATTTTGCCTGACTGATACAT+GGG | + | chr6_2:57399195-57399214 | Msa0921080:intron | 35.0% |
| !! | CTTTTTCACACTATAAGCAG+GGG | - | chr6_2:57399460-57399479 | None:intergenic | 35.0% |
| !!! | GCTTTTTCACACTATAAGCA+GGG | - | chr6_2:57399461-57399480 | None:intergenic | 35.0% |
| GAAACCTAATTGAAAGACTG+TGG | - | chr6_2:57399578-57399597 | None:intergenic | 35.0% | |
| TGCATATAAGGAGACTTAAC+TGG | - | chr6_2:57399605-57399624 | None:intergenic | 35.0% | |
| CCAAATATCCAAAGCAAAAG+TGG | - | chr6_2:57399735-57399754 | None:intergenic | 35.0% | |
| !! | CCACTTTTGCTTTGGATATT+TGG | + | chr6_2:57399732-57399751 | Msa0921080:CDS | 35.0% |
| !!! | CTTGGTTTTATTGTGCTCTT+TGG | + | chr6_2:57399761-57399780 | Msa0921080:CDS | 35.0% |
| TATGGTTGTGGCATAAGACT+CGG | + | chr6_2:57397099-57397118 | Msa0921080:CDS | 40.0% | |
| ! | ATGCTCATGCTAGACGATTT+TGG | + | chr6_2:57397153-57397172 | Msa0921080:CDS | 40.0% |
| ! | TGCTCATGCTAGACGATTTT+GGG | + | chr6_2:57397154-57397173 | Msa0921080:CDS | 40.0% |
| ATCACCAACCTGACTTTGTT+TGG | + | chr6_2:57397406-57397425 | Msa0921080:intron | 40.0% | |
| ! | TCACCAACCTGACTTTGTTT+GGG | + | chr6_2:57397407-57397426 | Msa0921080:intron | 40.0% |
| ! | ACTTTGTTTGGGAGTTTGGA+GGG | + | chr6_2:57397418-57397437 | Msa0921080:intron | 40.0% |
| ! | TGTATTGAGGAGGGTTTTTG+GGG | - | chr6_2:57397610-57397629 | None:intergenic | 40.0% |
| ATAGAGGAAAATGAGAGGAG+AGG | - | chr6_2:57397694-57397713 | None:intergenic | 40.0% | |
| TGGGCAACTGAAAGAAATAG+AGG | - | chr6_2:57397710-57397729 | None:intergenic | 40.0% | |
| AGGGATAGGGAAAAAGGAAT+GGG | - | chr6_2:57397729-57397748 | None:intergenic | 40.0% | |
| TTTGTGAGTTTGGAGGGATA+GGG | - | chr6_2:57397742-57397761 | None:intergenic | 40.0% | |
| !! | GCTTTGTTTGTGAGTTTGGA+GGG | - | chr6_2:57397748-57397767 | None:intergenic | 40.0% |
| ATTGAGAGTAGCTTGAGTAG+TGG | - | chr6_2:57397786-57397805 | None:intergenic | 40.0% | |
| TAATTGGATTCCCTAGGCTT+TGG | + | chr6_2:57398274-57398293 | Msa0921080:intron | 40.0% | |
| TCCCTGATTATTGTGGTCAA+AGG | - | chr6_2:57398302-57398321 | None:intergenic | 40.0% | |
| TGTAGACCTATAGGGAACAA+TGG | + | chr6_2:57398854-57398873 | Msa0921080:intron | 40.0% | |
| TAAGCAGCACTTATAGTCAG+TGG | + | chr6_2:57399072-57399091 | Msa0921080:intron | 40.0% | |
| ! | TTTTGCCTGACTGATACATG+GGG | + | chr6_2:57399196-57399215 | Msa0921080:intron | 40.0% |
| !!! | GGCTTTTTCACACTATAAGC+AGG | - | chr6_2:57399462-57399481 | None:intergenic | 40.0% |
| TCTGCCACAGTCTTTCAATT+AGG | + | chr6_2:57399571-57399590 | Msa0921080:CDS | 40.0% | |
| CATCTTGTGGTGTGCATATA+AGG | - | chr6_2:57399617-57399636 | None:intergenic | 40.0% | |
| !! | ACCACAAGATGCTATTTCCT+TGG | + | chr6_2:57399626-57399645 | Msa0921080:CDS | 40.0% |
| ACCAAGGAAATAGCATCTTG+TGG | - | chr6_2:57399630-57399649 | None:intergenic | 40.0% | |
| AGGAACTACTTTGAACACTG+TGG | + | chr6_2:57399683-57399702 | Msa0921080:CDS | 40.0% | |
| GGAACTACTTTGAACACTGT+GGG | + | chr6_2:57399684-57399703 | Msa0921080:CDS | 40.0% | |
| GAACTACTTTGAACACTGTG+GGG | + | chr6_2:57399685-57399704 | Msa0921080:CDS | 40.0% | |
| TTGGATATTTGGTCCAGTCT+TGG | + | chr6_2:57399743-57399762 | Msa0921080:CDS | 40.0% | |
| GAGCACAATAAAACCAAGAC+TGG | - | chr6_2:57399759-57399778 | None:intergenic | 40.0% | |
| TTGGGTTCCTACCATGTTGA+AGG | + | chr6_2:57397172-57397191 | Msa0921080:CDS | 45.0% | |
| ACTCCCAAACAAAGTCAGGT+TGG | - | chr6_2:57397413-57397432 | None:intergenic | 45.0% | |
| CCAAACTCCCAAACAAAGTC+AGG | - | chr6_2:57397417-57397436 | None:intergenic | 45.0% | |
| ! | CCTGACTTTGTTTGGGAGTT+TGG | + | chr6_2:57397414-57397433 | Msa0921080:intron | 45.0% |
| ! | GACTTTGTTTGGGAGTTTGG+AGG | + | chr6_2:57397417-57397436 | Msa0921080:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr6_2:57397419-57397438 | Msa0921080:intron | 45.0% |
| GAGTTTGGAGGGGATGAAAA+GGG | + | chr6_2:57397429-57397448 | Msa0921080:intron | 45.0% | |
| !! | GTATTGAGGAGGGTTTTTGG+GGG | - | chr6_2:57397609-57397628 | None:intergenic | 45.0% |
| ! | AATGAGAGGAGAGGCTTTTG+CGG | - | chr6_2:57397685-57397704 | None:intergenic | 45.0% |
| GAGGGATAGGGAAAAAGGAA+TGG | - | chr6_2:57397730-57397749 | None:intergenic | 45.0% | |
| GTTTGGAGGGATAGGGAAAA+AGG | - | chr6_2:57397735-57397754 | None:intergenic | 45.0% | |
| GTTTGTGAGTTTGGAGGGAT+AGG | - | chr6_2:57397743-57397762 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGTGAGTTTGG+AGG | - | chr6_2:57397749-57397768 | None:intergenic | 45.0% |
| !! | GTCAAAGGTACCAAAGCCTA+GGG | - | chr6_2:57398287-57398306 | None:intergenic | 45.0% |
| CCATTGCCATTGTTCCCTAT+AGG | - | chr6_2:57398863-57398882 | None:intergenic | 45.0% | |
| CCTATAGGGAACAATGGCAA+TGG | + | chr6_2:57398860-57398879 | Msa0921080:intron | 45.0% | |
| CTTCAAATATTTGGCACCCC+CGG | - | chr6_2:57399117-57399136 | None:intergenic | 45.0% | |
| TTTGCCTGACTGATACATGG+GGG | + | chr6_2:57399197-57399216 | Msa0921080:intron | 45.0% | |
| AAGATAAAAAGGTGGGTGCC+AGG | + | chr6_2:57399290-57399309 | Msa0921080:intron | 45.0% | |
| AGATAAAAAGGTGGGTGCCA+GGG | + | chr6_2:57399291-57399310 | Msa0921080:intron | 45.0% | |
| CTAATGCATTGCCGTTGTAG+TGG | - | chr6_2:57399358-57399377 | None:intergenic | 45.0% | |
| TTTCACACTATAAGCAGGGG+CGG | - | chr6_2:57399457-57399476 | None:intergenic | 45.0% | |
| CCATAGAGAACATCGTCAAG+AGG | - | chr6_2:57399483-57399502 | None:intergenic | 45.0% | |
| CCTCTTGACGATGTTCTCTA+TGG | + | chr6_2:57399480-57399499 | Msa0921080:CDS | 45.0% | |
| CAAATAATCAGGGGTCACCA+AGG | - | chr6_2:57399646-57399665 | None:intergenic | 45.0% | |
| CTTTGAACACTGTGGGGAAT+AGG | + | chr6_2:57399691-57399710 | Msa0921080:CDS | 45.0% | |
| !! | CTGCTCTTCCACTTTTGCTT+TGG | + | chr6_2:57399724-57399743 | Msa0921080:CDS | 45.0% |
| CACTCCCACAAACAATGTCA+AGG | - | chr6_2:57399809-57399828 | None:intergenic | 45.0% | |
| CTTGACATTGTTTGTGGGAG+TGG | + | chr6_2:57399807-57399826 | Msa0921080:CDS | 45.0% | |
| GGAGTTTGGAGGGGATGAAA+AGG | + | chr6_2:57397428-57397447 | Msa0921080:intron | 50.0% | |
| ! | ATGAGAGGAGAGGCTTTTGC+GGG | - | chr6_2:57397684-57397703 | None:intergenic | 50.0% |
| !! | GGTCAAAGGTACCAAAGCCT+AGG | - | chr6_2:57398288-57398307 | None:intergenic | 50.0% |
| GCAGCACTTATAGTCAGTGG+CGG | + | chr6_2:57399075-57399094 | Msa0921080:intron | 50.0% | |
| !! | ATGCTGGTTCGAATCTCACC+AGG | + | chr6_2:57399220-57399239 | Msa0921080:intron | 50.0% |
| GATAAAAAGGTGGGTGCCAG+GGG | + | chr6_2:57399292-57399311 | Msa0921080:intron | 50.0% | |
| TCGCGACCTATAACACACTG+AGG | + | chr6_2:57399322-57399341 | Msa0921080:intron | 50.0% | |
| CGCGACCTATAACACACTGA+GGG | + | chr6_2:57399323-57399342 | Msa0921080:intron | 50.0% | |
| GGAGCGCAAAACCACTACAA+CGG | + | chr6_2:57399344-57399363 | Msa0921080:intron | 50.0% | |
| ! | ATATAAACTGGGGGGTGCAG+TGG | + | chr6_2:57399408-57399427 | Msa0921080:intron | 50.0% |
| GATGTTCTCTATGGCGCTCA+CGG | + | chr6_2:57399489-57399508 | Msa0921080:CDS | 50.0% | |
| ! | TGAGAGGAGAGGCTTTTGCG+GGG | - | chr6_2:57397683-57397702 | None:intergenic | 55.0% |
| GCATCCCCCATGTATCAGTC+AGG | - | chr6_2:57399204-57399223 | None:intergenic | 55.0% | |
| GACTGATACATGGGGGATGC+TGG | + | chr6_2:57399204-57399223 | Msa0921080:intron | 55.0% | |
| GCGCTCCCTCAGTGTGTTAT+AGG | - | chr6_2:57399331-57399350 | None:intergenic | 55.0% | |
| TGGCGCTCACGGCGAATTTA+TGG | + | chr6_2:57399500-57399519 | Msa0921080:CDS | 55.0% | |
| GGTACTCTTCAGAGACCCCC+AGG | - | chr6_2:57399436-57399455 | None:intergenic | 60.0% | |
| AGGTCGCGAGTTCGATCCCC+TGG | - | chr6_2:57399311-57399330 | None:intergenic | 65.0% | |
| ! | TGGGGGGTGCAGTGGCACCT+GGG | + | chr6_2:57399416-57399435 | Msa0921080:intron | 70.0% |
| ! | CTGGGGGGTGCAGTGGCACC+TGG | + | chr6_2:57399415-57399434 | Msa0921080:intron | 75.0% |
| ! | GGGGGGTGCAGTGGCACCTG+GGG | + | chr6_2:57399417-57399436 | Msa0921080:intron | 75.0% |
| ! | GGGGGTGCAGTGGCACCTGG+GGG | + | chr6_2:57399418-57399437 | Msa0921080:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 57397026 | 57399872 | 57397026 | ID=Msa0921080;Name=Msa0921080 |
| chr6_2 | mRNA | 57397026 | 57399872 | 57397026 | ID=Msa0921080-mRNA-1;Parent=Msa0921080;Name=Msa0921080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|247 |
| chr6_2 | exon | 57397026 | 57397193 | 57397026 | ID=Msa0921080-mRNA-1:exon:8601;Parent=Msa0921080-mRNA-1 |
| chr6_2 | exon | 57398960 | 57399090 | 57398960 | ID=Msa0921080-mRNA-1:exon:8602;Parent=Msa0921080-mRNA-1 |
| chr6_2 | exon | 57399428 | 57399872 | 57399428 | ID=Msa0921080-mRNA-1:exon:8603;Parent=Msa0921080-mRNA-1 |
| chr6_2 | CDS | 57397026 | 57397193 | 57397026 | ID=Msa0921080-mRNA-1:cds;Parent=Msa0921080-mRNA-1 |
| chr6_2 | CDS | 57398960 | 57399090 | 57398960 | ID=Msa0921080-mRNA-1:cds;Parent=Msa0921080-mRNA-1 |
| chr6_2 | CDS | 57399428 | 57399872 | 57399428 | ID=Msa0921080-mRNA-1:cds;Parent=Msa0921080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
