AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480150 MtrunA17_Chr3g0112251 96.429 224 8 0 1 224 1 224 2.24e-156 432
Msa0480150 MtrunA17_Chr5g0398981 37.398 123 71 3 101 223 106 222 2.10e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480150 AT2G44920.2 86.286 175 24 0 50 224 50 224 1.68e-107 309
Msa0480150 AT2G44920.1 86.232 138 19 0 50 187 50 187 1.78e-79 237
Msa0480150 AT1G12250.2 34.848 132 75 4 97 223 41 166 1.20e-11 62.0
Msa0480150 AT1G12250.1 34.848 132 75 4 97 223 115 240 1.67e-11 62.8
Msa0480150 AT5G55000.2 37.838 111 65 1 94 200 174 284 4.16e-11 61.6
Msa0480150 AT5G55000.1 38.318 107 62 1 94 196 174 280 7.49e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCCTATCTCTCTGTTTC+TGG 0.179667 3_3:-85342870 Msa0480150:intron
ACTAGGGGACAAGATCTTTC+TGG 0.219620 3_3:-85342324 Msa0480150:CDS
AAATTTGAGCAATGCTAATT+TGG 0.246193 3_3:-85341308 Msa0480150:CDS
CATACCGGCGCCTGTAATAT+TGG 0.263857 3_3:+85341246 None:intergenic
TTTAAAGGTGCAAAATTGTT+AGG 0.294153 3_3:-85342103 Msa0480150:CDS
AAAATTGGCTTGACGCAGTA+TGG 0.314554 3_3:+85342123 None:intergenic
TTCTTCGATGCTGATTTAAC+AGG 0.320279 3_3:-85342073 Msa0480150:intron
TTTAAGGGATCCAATATTAC+AGG 0.328394 3_3:-85341256 Msa0480150:CDS
TGATCCTGCACTTGCATTCA+AGG 0.342254 3_3:-85342654 Msa0480150:intron
GATGCTTGGTGAGTTTGCTT+TGG 0.375494 3_3:+85342758 None:intergenic
TAAGAGATGGTGATGAGGTT+TGG 0.381918 3_3:+85342925 None:intergenic
CATATGGTCAAGGAGTTACT+AGG 0.385923 3_3:-85342341 Msa0480150:CDS
CTAGTAACTCCTTGACCATA+TGG 0.403791 3_3:+85342342 None:intergenic
CATGTCAGGTGCTGATCTTT+CGG 0.407019 3_3:-85341956 Msa0480150:intron
TTGGAAGGTGCACTTGTAAC+GGG 0.417101 3_3:-85341289 Msa0480150:CDS
CTAGGGGACAAGATCTTTCT+GGG 0.423220 3_3:-85342323 Msa0480150:CDS
CGAACCAGAAACAGAGAGAT+AGG 0.437434 3_3:+85342866 None:intergenic
GACAGAGTGAACTCATCAAC+TGG 0.437998 3_3:-85339083 Msa0480150:intron
AACCTCATCACCATCTCTTA+AGG 0.447203 3_3:-85342922 Msa0480150:CDS
AGAGATAGGAGTTGGTGAGC+AGG 0.464069 3_3:+85342880 None:intergenic
ATGAAGGGTGGAGGGCCATA+TGG 0.474954 3_3:-85342357 Msa0480150:intron
TTACCTTTGTCACATTTGCC+AGG 0.489767 3_3:+85341905 None:intergenic
AGTTGGTGAGCAGGTTGAAG+AGG 0.491050 3_3:+85342889 None:intergenic
GGTGAGCAGGTTGAAGAGGA+AGG 0.497485 3_3:+85342893 None:intergenic
CAGAAACTCACATTATCATT+CGG 0.504813 3_3:-85342734 Msa0480150:CDS
TTTGGAAGGTGCACTTGTAA+CGG 0.505123 3_3:-85341290 Msa0480150:CDS
TTGAGCAATGCTAATTTGGA+AGG 0.506866 3_3:-85341304 Msa0480150:CDS
ATCAATCTATCATGCGGATG+TGG 0.515784 3_3:+85343032 None:intergenic
TACCTCTGCAAAATTGCTGA+TGG 0.538634 3_3:-85339189 Msa0480150:CDS
TGGTGATGAATGAAGGGTGG+AGG 0.551341 3_3:-85342366 Msa0480150:intron
AATTGCACAGCAATGTATCA+CGG 0.554496 3_3:+85339051 None:intergenic
ACCTCTGCAAAATTGCTGAT+GGG 0.554917 3_3:-85339188 Msa0480150:intron
AGAAACAGAGAGATAGGAGT+TGG 0.558423 3_3:+85342872 None:intergenic
TGATGAGGTTTGGAAGTTGA+AGG 0.562107 3_3:+85342935 None:intergenic
ATATGGTCAAGGAGTTACTA+GGG 0.565044 3_3:-85342340 Msa0480150:CDS
TATACCTTGAATGCAAGTGC+AGG 0.570494 3_3:+85342650 None:intergenic
TATAATGTATATCATGTCAA+AGG 0.577746 3_3:-85338958 Msa0480150:three_prime_UTR
ATTGCACAGCAATGTATCAC+GGG 0.579298 3_3:+85339052 None:intergenic
GGATCCAATATTACAGGCGC+CGG 0.582010 3_3:-85341250 Msa0480150:intron
GGTGGAGGGCCATATGGTCA+AGG 0.584439 3_3:-85342351 Msa0480150:CDS
TACCTTTGTCACATTTGCCA+GGG 0.587787 3_3:+85341906 None:intergenic
TTCCCTGGCAAATGTGACAA+AGG 0.601317 3_3:-85341908 Msa0480150:intron
ATGCGGATGTGGAATTATTG+TGG 0.607522 3_3:+85343043 None:intergenic
ATGTGAGTTTCTGAGATGCT+TGG 0.612261 3_3:+85342744 None:intergenic
CTTTCTGGGAAAGATTTCAG+TGG 0.615907 3_3:-85342309 Msa0480150:CDS
TTTGGAAGTTGAAGGCAAAG+AGG 0.617513 3_3:+85342943 None:intergenic
GGTGATGAATGAAGGGTGGA+GGG 0.622244 3_3:-85342365 Msa0480150:intron
CATCAAGCAAGACTTCAAAA+CGG 0.635311 3_3:-85342277 Msa0480150:intron
AAGGTGTTGACCTTAAGAGA+TGG 0.643063 3_3:+85342912 None:intergenic
GACCTTAAGAGATGGTGATG+AGG 0.653487 3_3:+85342920 None:intergenic
TAGCTGTAACTATCCAACAA+TGG 0.657950 3_3:-85342981 Msa0480150:exon
ACACATATCAATCTATCATG+CGG 0.666603 3_3:+85343026 None:intergenic
GCACAGCAATGTATCACGGG+TGG 0.671947 3_3:+85339055 None:intergenic
TCACGTTGATCTTCTCTGAG+CGG 0.674168 3_3:+85339213 None:intergenic
TATGGTCAAGGAGTTACTAG+GGG 0.721516 3_3:-85342339 Msa0480150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAAGAAATTAAATTAAAA+TGG - chr3_3:85340353-85340372 Msa0480150:intron 10.0%
!!! TATAGTATTTTTATATAAGT+TGG + chr3_3:85340891-85340910 None:intergenic 10.0%
!! AACTTATATAAAAATACTAT+AGG - chr3_3:85340890-85340909 Msa0480150:intron 10.0%
!!! TTTTTGAAACAAAATATTAA+AGG - chr3_3:85341853-85341872 Msa0480150:intron 10.0%
!!! ATGTTTTGTTATTTATTTAT+TGG - chr3_3:85342486-85342505 Msa0480150:intron 10.0%
!! ATATATATTATATGTCTAAA+TGG - chr3_3:85342762-85342781 Msa0480150:CDS 10.0%
!!! TTTTTTGGTTAACAAATAAT+GGG - chr3_3:85339527-85339546 Msa0480150:intron 15.0%
!! GTTAATAAACTGAATTATAT+TGG + chr3_3:85340136-85340155 None:intergenic 15.0%
!! TATAAGTATAACTGTTTATT+AGG + chr3_3:85340280-85340299 None:intergenic 15.0%
!! TTCTTCAAATAATATAACAA+AGG + chr3_3:85340307-85340326 None:intergenic 15.0%
!!! TTAATTTCTTAACATTCTTT+TGG + chr3_3:85340346-85340365 None:intergenic 15.0%
!! TAGTTATGTTAATTAGTTAA+AGG - chr3_3:85340830-85340849 Msa0480150:intron 15.0%
!!! TATTAAATCTAATTCAAGTT+GGG + chr3_3:85341464-85341483 None:intergenic 15.0%
!! ATATTAAATCTAATTCAAGT+TGG + chr3_3:85341465-85341484 None:intergenic 15.0%
!! AACTTGAATTAGATTTAATA+TGG - chr3_3:85341464-85341483 Msa0480150:intron 15.0%
!! ACAATTGAAGAAAAATTATA+AGG + chr3_3:85342006-85342025 None:intergenic 15.0%
!! AAACATTCATATTGAAATGT+TGG + chr3_3:85339319-85339338 None:intergenic 20.0%
!! TTTCAATATGAATGTTTATC+TGG - chr3_3:85339322-85339341 Msa0480150:intron 20.0%
!!! GTTAAAGTTTTGTTCTTTTT+TGG - chr3_3:85339512-85339531 Msa0480150:intron 20.0%
!!! CTTTTTTGGTTAACAAATAA+TGG - chr3_3:85339526-85339545 Msa0480150:intron 20.0%
!!! TTTATTAGGTTGTTGAATAA+TGG + chr3_3:85340266-85340285 None:intergenic 20.0%
!! ATATTATTCTATGCTACTAT+TGG - chr3_3:85340713-85340732 Msa0480150:intron 20.0%
!! TTACTAATTCTATTAAGATC+AGG + chr3_3:85341043-85341062 None:intergenic 20.0%
!!! AGTAAACTTGCAATAAATTT+TGG - chr3_3:85341286-85341305 Msa0480150:CDS 20.0%
!! ATAAGAAAGTAAATTCAATG+TGG + chr3_3:85342395-85342414 None:intergenic 20.0%
!! ACATTGAATTTACTTTCTTA+TGG - chr3_3:85342394-85342413 Msa0480150:intron 20.0%
!! TATAATGTATATCATGTCAA+AGG - chr3_3:85342965-85342984 Msa0480150:CDS 20.0%
!!! CAATTTTGCACCTTTAAAAT+TGG + chr3_3:85339818-85339837 None:intergenic 25.0%
!! TTTAAAGGTGCAAAATTGTT+AGG - chr3_3:85339820-85339839 Msa0480150:intron 25.0%
!! CATTCATTGTGATACATTTT+TGG + chr3_3:85339887-85339906 None:intergenic 25.0%
!! TTTTTCATGCTCATTATGAT+AGG - chr3_3:85340045-85340064 Msa0480150:intron 25.0%
! ACTGAATTATATTGGACTAA+GGG + chr3_3:85340128-85340147 None:intergenic 25.0%
! AACTGAATTATATTGGACTA+AGG + chr3_3:85340129-85340148 None:intergenic 25.0%
! ATAACAACAAAGCAAAGAAA+AGG + chr3_3:85340166-85340185 None:intergenic 25.0%
!!! ATTAAGCAAAGTTTTGAACA+AGG + chr3_3:85340192-85340211 None:intergenic 25.0%
! TCAGCTAAATTAATACTTGT+AGG + chr3_3:85340502-85340521 None:intergenic 25.0%
! TTGTTAATTACAGTGATTTG+AGG + chr3_3:85340538-85340557 None:intergenic 25.0%
! CAACACAATAAATTGAGAAA+TGG + chr3_3:85340574-85340593 None:intergenic 25.0%
! CATTTCTCAATTTATTGTGT+TGG - chr3_3:85340572-85340591 Msa0480150:intron 25.0%
! AAATTTGAGCAATGCTAATT+TGG - chr3_3:85340615-85340634 Msa0480150:intron 25.0%
!! ATGCTACTATTGGAATTTTA+AGG - chr3_3:85340723-85340742 Msa0480150:intron 25.0%
!! TGCTACTATTGGAATTTTAA+GGG - chr3_3:85340724-85340743 Msa0480150:intron 25.0%
!!! ATTAGCTTTCAAATCATTGA+AGG - chr3_3:85340772-85340791 Msa0480150:intron 25.0%
!!! TATTGACATAGAACTGATTT+TGG - chr3_3:85340858-85340877 Msa0480150:intron 25.0%
!! TAAAAATACTATAGGAGCAT+AGG - chr3_3:85340898-85340917 Msa0480150:intron 25.0%
!! AAAAATACTATAGGAGCATA+GGG - chr3_3:85340899-85340918 Msa0480150:intron 25.0%
! TATTAAGATCAGGATTTACA+GGG + chr3_3:85341033-85341052 None:intergenic 25.0%
! GAATGAGAATGAATAAAACT+TGG + chr3_3:85341069-85341088 None:intergenic 25.0%
! ACCAGAAATTTCATCAAATT+AGG - chr3_3:85341094-85341113 Msa0480150:intron 25.0%
! TCCTAATTTGATGAAATTTC+TGG + chr3_3:85341098-85341117 None:intergenic 25.0%
! TAACGAACATATTTCGAATA+TGG + chr3_3:85341124-85341143 None:intergenic 25.0%
! GAAGGTAATAACAAAATGAA+GGG + chr3_3:85341259-85341278 None:intergenic 25.0%
! TATTGCAAGTTTACTAGTTA+CGG + chr3_3:85341281-85341300 None:intergenic 25.0%
! AAATTCAAAACCTTGCTTAA+GGG + chr3_3:85341377-85341396 None:intergenic 25.0%
! GTGTTAGTAGAGAAAATAAA+CGG - chr3_3:85341399-85341418 Msa0480150:intron 25.0%
!!! TTATTTTTTATGGTTCCACA+TGG - chr3_3:85341503-85341522 Msa0480150:intron 25.0%
! TTATTCTGATCTATAACCTT+CGG + chr3_3:85341541-85341560 None:intergenic 25.0%
! ATCAAAATTTAAGGATGAGT+TGG - chr3_3:85341711-85341730 Msa0480150:intron 25.0%
! TCAAAATTTAAGGATGAGTT+GGG - chr3_3:85341712-85341731 Msa0480150:intron 25.0%
! ATAATAGAACTAGCAATTAG+GGG + chr3_3:85341788-85341807 None:intergenic 25.0%
! CATAATAGAACTAGCAATTA+GGG + chr3_3:85341789-85341808 None:intergenic 25.0%
! ACATAATAGAACTAGCAATT+AGG + chr3_3:85341790-85341809 None:intergenic 25.0%
!!! TATTTTGAGTTTGAGTAATG+AGG - chr3_3:85341931-85341950 Msa0480150:CDS 25.0%
! ACTGAATCAAAATTTAGCAT+TGG - chr3_3:85342117-85342136 Msa0480150:CDS 25.0%
! CTGAATCAAAATTTAGCATT+GGG - chr3_3:85342118-85342137 Msa0480150:CDS 25.0%
! TTACAAGAGAAAACTATACT+GGG + chr3_3:85342188-85342207 None:intergenic 25.0%
! TTTACAAGAGAAAACTATAC+TGG + chr3_3:85342189-85342208 None:intergenic 25.0%
! ACTCTATATCTAAGCTATTA+TGG - chr3_3:85342254-85342273 Msa0480150:intron 25.0%
! TGTTTAGTAATGTGTAGAAA+AGG + chr3_3:85342281-85342300 None:intergenic 25.0%
!!! CATTTGCTTTTCTTTCAAAA+TGG + chr3_3:85343004-85343023 None:intergenic 25.0%
!!! CAAATGTTTTGTTGCATATT+AGG - chr3_3:85343018-85343037 Msa0480150:five_prime_UTR 25.0%
ACACATATCAATCTATCATG+CGG + chr3_3:85338900-85338919 None:intergenic 30.0%
CAGAAACTCACATTATCATT+CGG - chr3_3:85339189-85339208 Msa0480150:CDS 30.0%
!! TGGTTAACAAATAATGGGTA+TGG - chr3_3:85339532-85339551 Msa0480150:intron 30.0%
!! AACAAATAATGGGTATGGTT+TGG - chr3_3:85339537-85339556 Msa0480150:intron 30.0%
!! TTTAAGTTGATTTGATGACG+CGG - chr3_3:85339706-85339725 Msa0480150:intron 30.0%
!!! TTGTGATACATTTTTGGTGT+TGG + chr3_3:85339881-85339900 None:intergenic 30.0%
ATGAATGTAGTATACACACA+TGG - chr3_3:85339900-85339919 Msa0480150:intron 30.0%
TCATTATGATAGGATCTGAT+GGG - chr3_3:85340055-85340074 Msa0480150:intron 30.0%
TAATAGCAGTGATTGAAAGT+AGG - chr3_3:85340208-85340227 Msa0480150:intron 30.0%
AATAGCAGTGATTGAAAGTA+GGG - chr3_3:85340209-85340228 Msa0480150:intron 30.0%
ATGGCAAATTAGAAGATTCA+AGG - chr3_3:85340372-85340391 Msa0480150:intron 30.0%
TGGCAAATTAGAAGATTCAA+GGG - chr3_3:85340373-85340392 Msa0480150:intron 30.0%
!!! CACTACAAGATTTTTTTGAC+AGG + chr3_3:85340440-85340459 None:intergenic 30.0%
! AACGGGAAATACATCTTTTA+AGG - chr3_3:85340651-85340670 Msa0480150:intron 30.0%
! ACGGGAAATACATCTTTTAA+GGG - chr3_3:85340652-85340671 Msa0480150:intron 30.0%
TTTAAGGGATCCAATATTAC+AGG - chr3_3:85340667-85340686 Msa0480150:intron 30.0%
ATAGTGATACTACTACATAC+CGG + chr3_3:85340695-85340714 None:intergenic 30.0%
ATATCATGCAACCAAAAGAA+AGG - chr3_3:85340943-85340962 Msa0480150:intron 30.0%
AATCTGAATTCATCATGTCT+AGG - chr3_3:85341003-85341022 Msa0480150:intron 30.0%
ATCTGAATTCATCATGTCTA+GGG - chr3_3:85341004-85341023 Msa0480150:intron 30.0%
CTATTAAGATCAGGATTTAC+AGG + chr3_3:85341034-85341053 None:intergenic 30.0%
!! TTGATGAAATTTCTGGTTCT+AGG + chr3_3:85341091-85341110 None:intergenic 30.0%
GGAAGGTAATAACAAAATGA+AGG + chr3_3:85341260-85341279 None:intergenic 30.0%
AATTCAAAACCTTGCTTAAG+GGG + chr3_3:85341376-85341395 None:intergenic 30.0%
CAAATTCAAAACCTTGCTTA+AGG + chr3_3:85341378-85341397 None:intergenic 30.0%
TAGTAGAGAAAATAAACGGT+AGG - chr3_3:85341403-85341422 Msa0480150:intron 30.0%
AAAATTCAAGCATGACGTTT+AGG - chr3_3:85341575-85341594 Msa0480150:intron 30.0%
TTATGGTCTATAGAACTGAT+CGG - chr3_3:85341688-85341707 Msa0480150:intron 30.0%
ACTGATCGGATCAAAATTTA+AGG - chr3_3:85341702-85341721 Msa0480150:intron 30.0%
CAAAATTTAAGGATGAGTTG+GGG - chr3_3:85341713-85341732 Msa0480150:intron 30.0%
AGTTCTATTATGTTGTGATG+AGG - chr3_3:85341829-85341848 Msa0480150:intron 30.0%
! ATCAAAATTTAGCATTGGGT+AGG - chr3_3:85342122-85342141 Msa0480150:CDS 30.0%
! TCAAAATTTAGCATTGGGTA+GGG - chr3_3:85342123-85342142 Msa0480150:CDS 30.0%
TTGTAAACGTATGATATCCT+TGG - chr3_3:85342202-85342221 Msa0480150:intron 30.0%
CTATAATAGATGGTAGAGTT+AGG + chr3_3:85342305-85342324 None:intergenic 30.0%
CTAACTCTACCATCTATTAT+AGG - chr3_3:85342303-85342322 Msa0480150:CDS 30.0%
TAGCTGTAACTATCCAACAA+TGG - chr3_3:85338942-85338961 Msa0480150:three_prime_UTR 35.0%
TTCAGAAAAAGAGCCATTGT+TGG + chr3_3:85338958-85338977 None:intergenic 35.0%
GACAAAACATTGACACTTGT+CGG + chr3_3:85339351-85339370 None:intergenic 35.0%
TACGAACACTAACACAAACA+CGG + chr3_3:85339427-85339446 None:intergenic 35.0%
!! TATGGTTTGGTGATGAATGA+AGG - chr3_3:85339550-85339569 Msa0480150:intron 35.0%
!! ATGGTTTGGTGATGAATGAA+GGG - chr3_3:85339551-85339570 Msa0480150:intron 35.0%
ATATGGTCAAGGAGTTACTA+GGG - chr3_3:85339583-85339602 Msa0480150:intron 35.0%
CATCAAGCAAGACTTCAAAA+CGG - chr3_3:85339646-85339665 Msa0480150:intron 35.0%
!! TTCTTCGATGCTGATTTAAC+AGG - chr3_3:85339850-85339869 Msa0480150:intron 35.0%
GGGGAGATATTGAATGTAAA+TGG + chr3_3:85339936-85339955 None:intergenic 35.0%
CTCATTATGATAGGATCTGA+TGG - chr3_3:85340054-85340073 Msa0480150:intron 35.0%
TTGAGCAATGCTAATTTGGA+AGG - chr3_3:85340619-85340638 Msa0480150:intron 35.0%
! CCATGTCTTTTCCTTTCTTT+TGG + chr3_3:85340957-85340976 None:intergenic 35.0%
CCAAAAGAAAGGAAAAGACA+TGG - chr3_3:85340954-85340973 Msa0480150:intron 35.0%
AACGTGAATGCTTATTGCAA+AGG - chr3_3:85341201-85341220 Msa0480150:intron 35.0%
TTGTTCTGTTTCCCTCAAAT+AGG - chr3_3:85341430-85341449 Msa0480150:intron 35.0%
! ATTGAGTTTGTTCAGGTCTA+GGG - chr3_3:85342065-85342084 Msa0480150:intron 35.0%
AGCTTGTGTCCTATAATAGA+TGG + chr3_3:85342315-85342334 None:intergenic 35.0%
!!! TTTCTTATGGCTAGCTTTTC+TGG - chr3_3:85342407-85342426 Msa0480150:intron 35.0%
TTCAAGATATTAGCACTGTG+AGG - chr3_3:85342580-85342599 Msa0480150:intron 35.0%
TCAAGATATTAGCACTGTGA+GGG - chr3_3:85342581-85342600 Msa0480150:intron 35.0%
AATTGCACAGCAATGTATCA+CGG + chr3_3:85342875-85342894 None:intergenic 35.0%
ATGCGGATGTGGAATTATTG+TGG + chr3_3:85338883-85338902 None:intergenic 40.0%
ATCAATCTATCATGCGGATG+TGG + chr3_3:85338894-85338913 None:intergenic 40.0%
TTTGGAAGTTGAAGGCAAAG+AGG + chr3_3:85338983-85339002 None:intergenic 40.0%
TGATGAGGTTTGGAAGTTGA+AGG + chr3_3:85338991-85339010 None:intergenic 40.0%
! TAAGAGATGGTGATGAGGTT+TGG + chr3_3:85339001-85339020 None:intergenic 40.0%
AACCTCATCACCATCTCTTA+AGG - chr3_3:85339001-85339020 Msa0480150:three_prime_UTR 40.0%
!! AAGGTGTTGACCTTAAGAGA+TGG + chr3_3:85339014-85339033 None:intergenic 40.0%
AGAAACAGAGAGATAGGAGT+TGG + chr3_3:85339054-85339073 None:intergenic 40.0%
AACTCCTATCTCTCTGTTTC+TGG - chr3_3:85339053-85339072 Msa0480150:CDS 40.0%
!! ATGTGAGTTTCTGAGATGCT+TGG + chr3_3:85339182-85339201 None:intergenic 40.0%
TATACCTTGAATGCAAGTGC+AGG + chr3_3:85339276-85339295 None:intergenic 40.0%
! TGGTGTGTCCGTATTTTGTT+TGG - chr3_3:85339398-85339417 Msa0480150:intron 40.0%
CACGGACACCAAACAAAATA+CGG + chr3_3:85339409-85339428 None:intergenic 40.0%
CTAGTAACTCCTTGACCATA+TGG + chr3_3:85339584-85339603 None:intergenic 40.0%
CATATGGTCAAGGAGTTACT+AGG - chr3_3:85339582-85339601 Msa0480150:intron 40.0%
TATGGTCAAGGAGTTACTAG+GGG - chr3_3:85339584-85339603 Msa0480150:intron 40.0%
! CTTTCTGGGAAAGATTTCAG+TGG - chr3_3:85339614-85339633 Msa0480150:intron 40.0%
ATGACGCGGATAGTCAAATT+CGG - chr3_3:85339720-85339739 Msa0480150:intron 40.0%
!! AAAATTGGCTTGACGCAGTA+TGG + chr3_3:85339803-85339822 None:intergenic 40.0%
! CTGCGTCAAGCCAATTTTAA+AGG - chr3_3:85339805-85339824 Msa0480150:intron 40.0%
!! CGATGCTGATTTAACAGGTT+TGG - chr3_3:85339855-85339874 Msa0480150:intron 40.0%
TACCTTTGTCACATTTGCCA+GGG + chr3_3:85340020-85340039 None:intergenic 40.0%
TTACCTTTGTCACATTTGCC+AGG + chr3_3:85340021-85340040 None:intergenic 40.0%
! TTTGGAAGGTGCACTTGTAA+CGG - chr3_3:85340633-85340652 Msa0480150:intron 40.0%
ACATGGAAAGCGAGTTCTTT+GGG - chr3_3:85340971-85340990 Msa0480150:intron 40.0%
GCAAGTTTACTAGTTACGGA+AGG + chr3_3:85341277-85341296 None:intergenic 40.0%
TAACATATGAGCTGCATGTC+TGG + chr3_3:85341317-85341336 None:intergenic 40.0%
! ATGGCTTTTAGATGTACCGA+AGG - chr3_3:85341522-85341541 Msa0480150:intron 40.0%
TGAAGCTTTGCTGGTCAAAT+TGG + chr3_3:85341644-85341663 None:intergenic 40.0%
AATTTGACCAGCAAAGCTTC+AGG - chr3_3:85341643-85341662 Msa0480150:intron 40.0%
AGCAAAGCTTCAGGATTGTT+CGG - chr3_3:85341652-85341671 Msa0480150:intron 40.0%
! ATTTAAGGATGAGTTGGGGT+TGG - chr3_3:85341717-85341736 Msa0480150:intron 40.0%
ACTGAGAGGTGAGTAAGTAA+CGG + chr3_3:85341760-85341779 None:intergenic 40.0%
TGAACAAACTCAATGCTCTG+CGG + chr3_3:85342059-85342078 None:intergenic 40.0%
! CATTGAGTTTGTTCAGGTCT+AGG - chr3_3:85342064-85342083 Msa0480150:intron 40.0%
! TTAGCATTGGGTAGGGAAAA+AGG - chr3_3:85342130-85342149 Msa0480150:intron 40.0%
CTGGGTGAGAAAGTAGAATT+GGG + chr3_3:85342170-85342189 None:intergenic 40.0%
ACTGGGTGAGAAAGTAGAAT+TGG + chr3_3:85342171-85342190 None:intergenic 40.0%
TTGTATCTTCTCCTCAAGCA+GGG + chr3_3:85342456-85342475 None:intergenic 40.0%
TACCTCTGCAAAATTGCTGA+TGG - chr3_3:85342734-85342753 Msa0480150:CDS 40.0%
ACCTCTGCAAAATTGCTGAT+GGG - chr3_3:85342735-85342754 Msa0480150:CDS 40.0%
! ATCGCTAACGAAGTTGTTTC+TGG - chr3_3:85342816-85342835 Msa0480150:intron 40.0%
ATTGCACAGCAATGTATCAC+GGG + chr3_3:85342874-85342893 None:intergenic 40.0%
! GACCTTAAGAGATGGTGATG+AGG + chr3_3:85339006-85339025 None:intergenic 45.0%
CGAACCAGAAACAGAGAGAT+AGG + chr3_3:85339060-85339079 None:intergenic 45.0%
TCACTCTACCACTCTTCACA+GGG - chr3_3:85339135-85339154 Msa0480150:intron 45.0%
! GATGCTTGGTGAGTTTGCTT+TGG + chr3_3:85339168-85339187 None:intergenic 45.0%
TGATCCTGCACTTGCATTCA+AGG - chr3_3:85339269-85339288 Msa0480150:intron 45.0%
GTATATGTGCTAGTGCTTCG+TGG - chr3_3:85339378-85339397 Msa0480150:intron 45.0%
!! GTTTGGTGATGAATGAAGGG+TGG - chr3_3:85339554-85339573 Msa0480150:intron 45.0%
ACTAGGGGACAAGATCTTTC+TGG - chr3_3:85339599-85339618 Msa0480150:intron 45.0%
CTAGGGGACAAGATCTTTCT+GGG - chr3_3:85339600-85339619 Msa0480150:intron 45.0%
ATCAGCACCTGACATGACAA+CGG + chr3_3:85339963-85339982 None:intergenic 45.0%
!! CATGTCAGGTGCTGATCTTT+CGG - chr3_3:85339967-85339986 Msa0480150:intron 45.0%
!! TAGAAGTGCAGACTTTTCCC+TGG - chr3_3:85340000-85340019 Msa0480150:intron 45.0%
TTCCCTGGCAAATGTGACAA+AGG - chr3_3:85340015-85340034 Msa0480150:intron 45.0%
TTGGCATTACTGCTTTCTGC+AGG - chr3_3:85340591-85340610 Msa0480150:intron 45.0%
! TTGGAAGGTGCACTTGTAAC+GGG - chr3_3:85340634-85340653 Msa0480150:intron 45.0%
GACATGGAAAGCGAGTTCTT+TGG - chr3_3:85340970-85340989 Msa0480150:intron 45.0%
CATGGAAAGCGAGTTCTTTG+GGG - chr3_3:85340972-85340991 Msa0480150:intron 45.0%
ATGGAAAGCGAGTTCTTTGG+GGG - chr3_3:85340973-85340992 Msa0480150:intron 45.0%
AATCCAGTTCCCCTTAAGCA+AGG - chr3_3:85341364-85341383 Msa0480150:intron 45.0%
AAACCTTGCTTAAGGGGAAC+TGG + chr3_3:85341370-85341389 None:intergenic 45.0%
GGGTCAGTAGACCTATTTGA+GGG + chr3_3:85341444-85341463 None:intergenic 45.0%
TGGGTCAGTAGACCTATTTG+AGG + chr3_3:85341445-85341464 None:intergenic 45.0%
CGGTACATCTAAAAGCCATG+TGG + chr3_3:85341521-85341540 None:intergenic 45.0%
ACGACTCTTAAGGACGAGTT+TGG + chr3_3:85341610-85341629 None:intergenic 45.0%
CCTTAAGAGTCGTCATGTCT+CGG - chr3_3:85341617-85341636 Msa0480150:intron 45.0%
GAACAATCCTGAAGCTTTGC+TGG + chr3_3:85341653-85341672 None:intergenic 45.0%
GCAAAGCTTCAGGATTGTTC+GGG - chr3_3:85341653-85341672 Msa0480150:intron 45.0%
TTCAGGATTGTTCGGGTCTT+GGG - chr3_3:85341660-85341679 Msa0480150:intron 45.0%
CTGAGAGGTGAGTAAGTAAC+GGG + chr3_3:85341759-85341778 None:intergenic 45.0%
AATTAGGGGTGAGAACTGAG+AGG + chr3_3:85341774-85341793 None:intergenic 45.0%
GAACAAACTCAATGCTCTGC+GGG + chr3_3:85342058-85342077 None:intergenic 45.0%
!! GCAGAGCATTGAGTTTGTTC+AGG - chr3_3:85342058-85342077 Msa0480150:intron 45.0%
GTATGATATCCTTGGACGCA+GGG - chr3_3:85342210-85342229 Msa0480150:intron 45.0%
AGGGCAGAAGGTAGTCATTT+AGG - chr3_3:85342229-85342248 Msa0480150:intron 45.0%
!!! CTTATGGCTAGCTTTTCTGG+CGG - chr3_3:85342410-85342429 Msa0480150:intron 45.0%
GGGGTTGTATATCAACCTCT+TGG + chr3_3:85342436-85342455 None:intergenic 45.0%
TGATATACAACCCCTGCTTG+AGG - chr3_3:85342442-85342461 Msa0480150:intron 45.0%
TGTATCTTCTCCTCAAGCAG+GGG + chr3_3:85342455-85342474 None:intergenic 45.0%
GTTGTATCTTCTCCTCAAGC+AGG + chr3_3:85342457-85342476 None:intergenic 45.0%
GATATTAGCACTGTGAGGGA+AGG - chr3_3:85342585-85342604 Msa0480150:intron 45.0%
TCACGTTGATCTTCTCTGAG+CGG + chr3_3:85342713-85342732 None:intergenic 45.0%
! ACCCATCAGCAATTTTGCAG+AGG + chr3_3:85342739-85342758 None:intergenic 45.0%
GACAGAGTGAACTCATCAAC+TGG - chr3_3:85342840-85342859 Msa0480150:intron 45.0%
!!! GATATATATTTTATTTTTTA+TGG - chr3_3:85341493-85341512 Msa0480150:intron 5.0%
!! AGTTGGTGAGCAGGTTGAAG+AGG + chr3_3:85339037-85339056 None:intergenic 50.0%
!! AGAGATAGGAGTTGGTGAGC+AGG + chr3_3:85339046-85339065 None:intergenic 50.0%
CTCACTCTACCACTCTTCAC+AGG - chr3_3:85339134-85339153 Msa0480150:intron 50.0%
GATTGCTTCCCTGTGAAGAG+TGG + chr3_3:85339146-85339165 None:intergenic 50.0%
! TGGTGATGAATGAAGGGTGG+AGG - chr3_3:85339557-85339576 Msa0480150:intron 50.0%
GGTGATGAATGAAGGGTGGA+GGG - chr3_3:85339558-85339577 Msa0480150:intron 50.0%
TCAGCACCTGACATGACAAC+GGG + chr3_3:85339962-85339981 None:intergenic 50.0%
GGATCCAATATTACAGGCGC+CGG - chr3_3:85340673-85340692 Msa0480150:intron 50.0%
CATACCGGCGCCTGTAATAT+TGG + chr3_3:85340680-85340699 None:intergenic 50.0%
TGGAAAGCGAGTTCTTTGGG+GGG - chr3_3:85340974-85340993 Msa0480150:intron 50.0%
AGCATGACGTTTAGGTGAGC+TGG - chr3_3:85341583-85341602 Msa0480150:intron 50.0%
CCGAGACATGACGACTCTTA+AGG + chr3_3:85341620-85341639 None:intergenic 50.0%
CTTCAGGATTGTTCGGGTCT+TGG - chr3_3:85341659-85341678 Msa0480150:intron 50.0%
TCGGGTCTTGGGACAAGTTA+TGG - chr3_3:85341671-85341690 Msa0480150:intron 50.0%
CGTATGATATCCTTGGACGC+AGG - chr3_3:85342209-85342228 Msa0480150:intron 50.0%
AGCGGCACATCAGTGAAATC+TGG + chr3_3:85342695-85342714 None:intergenic 50.0%
! GGTGAGCAGGTTGAAGAGGA+AGG + chr3_3:85339033-85339052 None:intergenic 55.0%
ATGAAGGGTGGAGGGCCATA+TGG - chr3_3:85339566-85339585 Msa0480150:intron 55.0%
CTGACATGACAACGGGTGTG+GGG + chr3_3:85339955-85339974 None:intergenic 55.0%
CCTGACATGACAACGGGTGT+GGG + chr3_3:85339956-85339975 None:intergenic 55.0%
ACCTGACATGACAACGGGTG+TGG + chr3_3:85339957-85339976 None:intergenic 55.0%
!! TAGCTTTTCTGGCGGCCAAG+AGG - chr3_3:85342418-85342437 Msa0480150:intron 55.0%
GCACAGCAATGTATCACGGG+TGG + chr3_3:85342871-85342890 None:intergenic 55.0%
GGTGGAGGGCCATATGGTCA+AGG - chr3_3:85339572-85339591 Msa0480150:intron 60.0%
CCCACACCCGTTGTCATGTC+AGG - chr3_3:85339953-85339972 Msa0480150:intron 60.0%
ATCCTTGGACGCAGGGCAGA+AGG - chr3_3:85342217-85342236 Msa0480150:intron 60.0%
TACCTTCTGCCCTGCGTCCA+AGG + chr3_3:85342222-85342241 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85338870 85343075 85338870 ID=Msa0480150;Name=Msa0480150
chr3_3 mRNA 85338870 85343075 85338870 ID=Msa0480150-mRNA-1;Parent=Msa0480150;Name=Msa0480150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91|1|1|1|0.85|0.87|8|179|224
chr3_3 exon 85338870 85339100 85338870 ID=Msa0480150-mRNA-1:exon:24518;Parent=Msa0480150-mRNA-1
chr3_3 exon 85339189 85339249 85339189 ID=Msa0480150-mRNA-1:exon:24517;Parent=Msa0480150-mRNA-1
chr3_3 exon 85341251 85341332 85341251 ID=Msa0480150-mRNA-1:exon:24516;Parent=Msa0480150-mRNA-1
chr3_3 exon 85341909 85341970 85341909 ID=Msa0480150-mRNA-1:exon:24515;Parent=Msa0480150-mRNA-1
chr3_3 exon 85342074 85342146 85342074 ID=Msa0480150-mRNA-1:exon:24514;Parent=Msa0480150-mRNA-1
chr3_3 exon 85342278 85342373 85342278 ID=Msa0480150-mRNA-1:exon:24513;Parent=Msa0480150-mRNA-1
chr3_3 exon 85342655 85342789 85342655 ID=Msa0480150-mRNA-1:exon:24512;Parent=Msa0480150-mRNA-1
chr3_3 exon 85342871 85343075 85342871 ID=Msa0480150-mRNA-1:exon:24511;Parent=Msa0480150-mRNA-1
chr3_3 five_prime_UTR 85342985 85343075 85342985 ID=Msa0480150-mRNA-1:five_prime_utr;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85342871 85342984 85342871 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85342655 85342789 85342655 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85342278 85342373 85342278 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85342074 85342146 85342074 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85341909 85341970 85341909 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85341251 85341332 85341251 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85339189 85339249 85339189 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 CDS 85339049 85339100 85339049 ID=Msa0480150-mRNA-1:cds;Parent=Msa0480150-mRNA-1
chr3_3 three_prime_UTR 85338870 85339048 85338870 ID=Msa0480150-mRNA-1:three_prime_utr;Parent=Msa0480150-mRNA-1
Gene Sequence

>Msa0480150

ATGGCTCTTTTTCTGAACGCCTCTTTGCCTTCAACTTCCAAACCTCATCACCATCTCTTAAGGTCAACACCTTCCTCTTCAACCTGCTCACCAACTCCTATCTCTCTGTTTCTGGGAAGCAATCCAAAGCAAACTCACCAAGCATCTCAGAAACTCACATTATCATTCGGTGAATCAGTGTCTAGTGCAGCTCTAGTTGCTCTTCTATCTGCTTCTCTCTTCTTCGTTGATCCTGCACTTGCATTCAAGGGTGGAGGGCCATATGGTCAAGGAGTTACTAGGGGACAAGATCTTTCTGGGAAAGATTTCAGTGGCAAGACACTCATCAAGCAAGACTTCAAAACGTCCATACTGCGTCAAGCCAATTTTAAAGGTGCAAAATTGTTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTGCTGATCTTTCGGATACTGATCTTAGAAGTGCAGACTTTTCCCTGGCAAATGTGACAAAGGTAAATTTGAGCAATGCTAATTTGGAAGGTGCACTTGTAACGGGAAATACATCTTTTAAGGGATCCAATATTACAGGCGCCGATTTCACTGATGTGCCGCTCAGAGAAGATCAACGTGAATACCTCTGCAAAATTGCTGATGGAGTGAACTCATCAACTGGAAATGCCACCCGTGATACATTGCTGTGCAATTAA

Protein sequence

>Msa0480150

MALFLNASLPSTSKPHHHLLRSTPSSSTCSPTPISLFLGSNPKQTHQASQKLTLSFGESVSSAALVALLSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDTDLRSADFSLANVTKVNLSNANLEGALVTGNTSFKGSNITGADFTDVPLREDQREYLCKIADGVNSSTGNATRDTLLCN*