AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323990 MtrunA17_Chr2g0301241 98.425 254 4 0 1 254 1 254 0.0 501
Msa0323990 MtrunA17_Chr4g0070201 74.803 254 63 1 1 254 1 253 4.68e-139 390
Msa0323990 MtrunA17_Chr3g0139681 38.947 95 56 2 159 253 3 95 4.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323990 AT5G20720.1 71.484 256 68 2 1 254 1 253 4.97e-129 365
Msa0323990 AT5G20720.2 71.484 256 68 2 1 254 1 253 4.97e-129 365
Msa0323990 AT5G20720.4 71.484 256 68 2 1 254 1 253 4.97e-129 365
Msa0323990 AT5G20720.3 71.484 256 68 2 1 254 1 253 4.97e-129 365

Find 88 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCAGCGTATT+TGG 0.227055 2_4:-28819714 None:intergenic
AAAGAGGAATTACCTTTATC+AGG 0.282028 2_4:-28818800 None:intergenic
CTCTCTCCAACAACAAATTA+AGG 0.304689 2_4:+28816988 Msa0323990:five_prime_UTR
ACTATGAAAGGTATCTTTCT+TGG 0.321364 2_4:+28820141 Msa0323990:three_prime_UTR
TGTCATGGCTGTACTCTCTT+AGG 0.332407 2_4:+28819781 Msa0323990:CDS
CATCTGGTTGTTGCGTTAAT+CGG 0.338579 2_4:+28819919 Msa0323990:three_prime_UTR
CAGGTGGTAGCAGTTGGTCC+TGG 0.340730 2_4:+28819626 Msa0323990:intron
CGATAAAGACGCAGTTCTAA+TGG 0.342558 2_4:+28820089 Msa0323990:three_prime_UTR
AAGTGATTCCTAACGGGAAC+TGG 0.346232 2_4:+28819887 Msa0323990:three_prime_UTR
TTGAACAGTGAAAGTGTAAA+TGG 0.366492 2_4:+28817116 Msa0323990:intron
GTTGGAGAGAGTAGATAGAT+TGG 0.376813 2_4:-28816976 None:intergenic
TTCATTCTGCTCGACATGTT+AGG 0.390168 2_4:+28817220 Msa0323990:CDS
GTACACTGCAATCAAGCCTT+TGG 0.401887 2_4:+28818356 Msa0323990:intron
CAATCAAGCCTTTGGGTGAC+AGG 0.402537 2_4:+28818364 Msa0323990:CDS
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2_4:-28818441 None:intergenic
AAGCTTACTGTTCCAAATGA+AGG 0.410647 2_4:-28819305 None:intergenic
ACCAAGGAGAAACCTTCATT+TGG 0.419164 2_4:+28819293 Msa0323990:CDS
TATCAGGACTCTATCATTCA+AGG 0.421253 2_4:-28818784 None:intergenic
GAATGATAGAGTCCTGATAA+AGG 0.421967 2_4:+28818788 Msa0323990:CDS
TGCTTACCTTAATTTGTTGT+TGG 0.423268 2_4:-28816994 None:intergenic
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2_4:+28817251 Msa0323990:CDS
CTATGAAAGGTATCTTTCTT+GGG 0.430830 2_4:+28820142 Msa0323990:three_prime_UTR
GAATGAAACTGAACACTTGA+TGG 0.432793 2_4:-28817204 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2_4:-28818515 None:intergenic
CCTTGATATCATCAGTTTCA+AGG 0.440736 2_4:-28818752 None:intergenic
ATACGCTGGTAATGACTTCA+AGG 0.442105 2_4:+28819718 Msa0323990:CDS
TTGGAGAGAGTAGATAGATT+GGG 0.448206 2_4:-28816975 None:intergenic
TCCAAATGAAGGTTTCTCCT+TGG 0.449870 2_4:-28819294 None:intergenic
AGGAGCGTTGCATCCTTTGA+AGG 0.455252 2_4:+28817174 Msa0323990:CDS
TGGTCCTGGGCTTGTGGATG+AGG 0.455398 2_4:+28819640 Msa0323990:CDS
AATGACTTCAAGGGCAAAGA+TGG 0.468491 2_4:+28819728 Msa0323990:CDS
ATTACCAAGTGATTCCTAAC+GGG 0.475609 2_4:+28819881 Msa0323990:three_prime_UTR
ATAGATTGGGTTAGATAAAG+TGG 0.476335 2_4:-28816962 None:intergenic
CCTTGAAACTGATGATATCA+AGG 0.481354 2_4:+28818752 Msa0323990:CDS
CTCAAATATTGCTCATCTGA+TGG 0.485884 2_4:-28820009 None:intergenic
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2_4:-28817265 None:intergenic
TACACTGCAATCAAGCCTTT+GGG 0.491403 2_4:+28818357 Msa0323990:CDS
TTGAAAACCCAGTTCCCGTT+AGG 0.491683 2_4:-28819895 None:intergenic
AGGTGGTAGCAGTTGGTCCT+GGG 0.491754 2_4:+28819627 Msa0323990:intron
ATATATGCTGCAGATTGAAA+AGG 0.493775 2_4:+28819229 Msa0323990:intron
TTGAAGGATGATGACATTGT+TGG 0.496634 2_4:+28818726 Msa0323990:CDS
AAACCTTTGACTGTTACTCC+TGG 0.503322 2_4:+28819674 Msa0323990:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2_4:+28817225 Msa0323990:CDS
AGCAGTTGGTCCTGGGCTTG+TGG 0.507384 2_4:+28819634 Msa0323990:CDS
TTCAAAGTATGCTGGTACTG+AGG 0.520573 2_4:+28818674 Msa0323990:CDS
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2_4:-28817252 None:intergenic
GAGGTGGTTGCTGTTGGAGA+AGG 0.527915 2_4:+28818474 Msa0323990:CDS
ATCAGGACTCTATCATTCAA+GGG 0.529761 2_4:-28818783 None:intergenic
GTGCTCAAACAAAGCCTCAA+GGG 0.530305 2_4:+28818448 Msa0323990:CDS
CTTGAGGAGTTCAGATGTCA+TGG 0.532308 2_4:+28819766 Msa0323990:CDS
GGTACTGAGGTGGACTTCAA+TGG 0.535132 2_4:+28818687 Msa0323990:CDS
GAGTACAGAACTGTGTTCCC+AGG 0.548022 2_4:-28819692 None:intergenic
TTCCCAGGAGTAACAGTCAA+AGG 0.549921 2_4:-28819677 None:intergenic
GTTGTCTATTCAAAGTATGC+TGG 0.560205 2_4:+28818666 Msa0323990:CDS
AACCTTTGACTGTTACTCCT+GGG 0.561302 2_4:+28819675 Msa0323990:CDS
GCATCTCTAGGTACTATGAA+AGG 0.565825 2_4:+28820129 Msa0323990:three_prime_UTR
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2_4:+28818515 Msa0323990:CDS
GTTGGAGAAGGAAAGACACT+TGG 0.569362 2_4:+28818486 Msa0323990:CDS
CCTGGGCTTGTGGATGAGGA+AGG 0.570612 2_4:+28819644 Msa0323990:CDS
CCTTCCTCATCCACAAGCCC+AGG 0.574958 2_4:-28819644 None:intergenic
GAATAGACAACTTGTGCACC+TGG 0.575907 2_4:-28818654 None:intergenic
GATTACCAAGTGATTCCTAA+CGG 0.577576 2_4:+28819880 Msa0323990:three_prime_UTR
AGTGATTCCTAACGGGAACT+GGG 0.582781 2_4:+28819888 Msa0323990:three_prime_UTR
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2_4:+28819268 Msa0323990:CDS
ATGTCACAGGTGGTAGCAGT+TGG 0.591495 2_4:+28819620 Msa0323990:intron
CAGAAGAGAAGACACAGAGT+GGG 0.596412 2_4:+28818409 Msa0323990:CDS
TGATGGTCGAAGTCCTTCAA+AGG 0.597517 2_4:-28817187 None:intergenic
AGTGCTCAAACAAAGCCTCA+AGG 0.600617 2_4:+28818447 Msa0323990:CDS
TGCTCAAACAAAGCCTCAAG+GGG 0.604732 2_4:+28818449 Msa0323990:CDS
CATGACATCTGAACTCCTCA+AGG 0.608574 2_4:-28819765 None:intergenic
AATCAAGCCTTTGGGTGACA+GGG 0.609714 2_4:+28818365 Msa0323990:CDS
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2_4:+28819277 Msa0323990:CDS
TGAAAGGTATCTTTCTTGGG+AGG 0.614000 2_4:+28820145 Msa0323990:three_prime_UTR
ACAAGTACCCTGTCACCCAA+AGG 0.615884 2_4:-28818372 None:intergenic
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2_4:+28819232 Msa0323990:intron
TAGAAACTATAAAATTTCAA+CGG 0.624473 2_4:+28820039 Msa0323990:three_prime_UTR
AAAGTATGCTGGTACTGAGG+TGG 0.625111 2_4:+28818677 Msa0323990:CDS
AGTTCCCGTTAGGAATCACT+TGG 0.628468 2_4:-28819885 None:intergenic
GCAGAAGAGAAGACACAGAG+TGG 0.638010 2_4:+28818408 Msa0323990:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.641486 2_4:+28818487 Msa0323990:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2_4:+28817241 Msa0323990:CDS
TACGCTGGTAATGACTTCAA+GGG 0.655719 2_4:+28819719 Msa0323990:CDS
ATCACTTGGTAATCAAAACA+AGG 0.676030 2_4:-28819871 None:intergenic
GTTCTGTACTCCAAATACGC+TGG 0.690424 2_4:+28819704 Msa0323990:CDS
CAGCATCATCAATTTCAACG+AGG 0.718872 2_4:+28817154 Msa0323990:CDS
GTTCTAATGGAAACTCGATG+TGG 0.732599 2_4:+28820102 Msa0323990:three_prime_UTR
GCTCAAACAAAGCCTCAAGG+GGG 0.744343 2_4:+28818450 Msa0323990:CDS
AGAATGAAAATAAACCTTGG+GGG 0.751739 2_4:-28817304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGAATAATTAAATTAAAA+AGG - chr2_4:28818067-28818086 None:intergenic 10.0%
!!! TTCATTTTTTAATTTTGATC+TGG + chr2_4:28818872-28818891 Msa0323990:intron 15.0%
!! TAGAAACTATAAAATTTCAA+CGG + chr2_4:28820039-28820058 Msa0323990:three_prime_UTR 15.0%
!! AAAAAAAATTGCAATGCAAT+GGG + chr2_4:28816814-28816833 Msa0323990:five_prime_UTR 20.0%
!! AAAGAATGAAAATAAACCTT+GGG - chr2_4:28817309-28817328 None:intergenic 20.0%
!! AAAAGAATGAAAATAAACCT+TGG - chr2_4:28817310-28817329 None:intergenic 20.0%
!!! CTATAATTTTATGACACAAA+AGG - chr2_4:28817577-28817596 None:intergenic 20.0%
!!! CTTTTGTGTCATAAAATTAT+AGG + chr2_4:28817575-28817594 Msa0323990:intron 20.0%
!!! ATAAAATTGCTTTTTCAGAT+TGG + chr2_4:28817635-28817654 Msa0323990:intron 20.0%
!!! ATTGAGTTTTGAAAAGATAA+TGG + chr2_4:28817887-28817906 Msa0323990:intron 20.0%
!! AATTGTGCATCAAAATTAAA+GGG - chr2_4:28817992-28818011 None:intergenic 20.0%
!! AAATTGTGCATCAAAATTAA+AGG - chr2_4:28817993-28818012 None:intergenic 20.0%
!! ATTTGTAAAAATTTGTCTTG+CGG + chr2_4:28818022-28818041 Msa0323990:intron 20.0%
!! ATCATAAAATTGTGAAAAGA+CGG - chr2_4:28818295-28818314 None:intergenic 20.0%
!!! ATCGTTCTTTAATTTTTCTT+GGG + chr2_4:28818576-28818595 Msa0323990:intron 20.0%
!! ATACATTAACTATAGAGATA+AGG - chr2_4:28819443-28819462 None:intergenic 20.0%
!! AAAAACATTGTTGTAATACT+TGG + chr2_4:28819597-28819616 Msa0323990:intron 20.0%
!!! GCATTGCAATTTTTTTTGTT+TGG - chr2_4:28816811-28816830 None:intergenic 25.0%
! CAAAAAAAATTGCAATGCAA+TGG + chr2_4:28816813-28816832 Msa0323990:five_prime_UTR 25.0%
! AAGAATGAAAATAAACCTTG+GGG - chr2_4:28817308-28817327 None:intergenic 25.0%
!! AGTGTTATTGATATTGAAGA+AGG + chr2_4:28817458-28817477 Msa0323990:intron 25.0%
! AATAATTGTTTCATCTCCAT+TGG - chr2_4:28817706-28817725 None:intergenic 25.0%
! GACAATTTGAAAGAGTAATT+TGG + chr2_4:28817760-28817779 Msa0323990:intron 25.0%
!!! AGTTTTGAAAAGATAATGGT+GGG + chr2_4:28817891-28817910 Msa0323990:intron 25.0%
!! GATGAAGTATCAATTTACTA+TGG + chr2_4:28817915-28817934 Msa0323990:intron 25.0%
!!! TACAATTTTGATGTTGAATG+TGG + chr2_4:28817955-28817974 Msa0323990:intron 25.0%
! AATTAAATTAAAAAGGCCTC+TGG - chr2_4:28818060-28818079 None:intergenic 25.0%
! AATCAGCATAATTGTTGTAT+TGG + chr2_4:28818245-28818264 Msa0323990:intron 25.0%
!!! GATCGTTCTTTAATTTTTCT+TGG + chr2_4:28818575-28818594 Msa0323990:intron 25.0%
!!! TTTAATTTTTCTTGGGAAGA+AGG + chr2_4:28818583-28818602 Msa0323990:intron 25.0%
!! TTAATTTTTCTTGGGAAGAA+GGG + chr2_4:28818584-28818603 Msa0323990:intron 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG - chr2_4:28818819-28818838 None:intergenic 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG + chr2_4:28818825-28818844 Msa0323990:intron 25.0%
! CAAAATTAAAAAATGAACCG+CGG - chr2_4:28818869-28818888 None:intergenic 25.0%
! AGTGATGAAAACAAAATCAA+CGG + chr2_4:28818930-28818949 Msa0323990:intron 25.0%
!!! ATTTGAGATGTCTTACTTTT+TGG + chr2_4:28819024-28819043 Msa0323990:intron 25.0%
! AGTTGCACAAAATATGAAAT+GGG - chr2_4:28819114-28819133 None:intergenic 25.0%
! AAGTTGCACAAAATATGAAA+TGG - chr2_4:28819115-28819134 None:intergenic 25.0%
!! AACATGTTTTCAAACAAAGA+AGG - chr2_4:28819341-28819360 None:intergenic 25.0%
! TTAAATCTTAAGTGGATGTT+GGG - chr2_4:28819372-28819391 None:intergenic 25.0%
! TTTAAATCTTAAGTGGATGT+TGG - chr2_4:28819373-28819392 None:intergenic 25.0%
! TGCTACATTTAAATCTTAAG+TGG - chr2_4:28819380-28819399 None:intergenic 25.0%
!! TATCCTATTTCTCATGAATA+TGG + chr2_4:28819551-28819570 Msa0323990:intron 25.0%
!! TTTTGTGTTCATCTTACAAT+TGG - chr2_4:28819845-28819864 None:intergenic 25.0%
! TGTTTGGAGTAAAAATGTTC+AGG - chr2_4:28816795-28816814 None:intergenic 30.0%
AAAAAAGAACAAGATTGGGA+GGG - chr2_4:28816900-28816919 None:intergenic 30.0%
TAAAAAAGAACAAGATTGGG+AGG - chr2_4:28816901-28816920 None:intergenic 30.0%
!!! TCCCAATCTTGTTCTTTTTT+AGG + chr2_4:28816900-28816919 Msa0323990:five_prime_UTR 30.0%
CCCTAAAAAAGAACAAGATT+GGG - chr2_4:28816904-28816923 None:intergenic 30.0%
!!! CCCAATCTTGTTCTTTTTTA+GGG + chr2_4:28816901-28816920 Msa0323990:five_prime_UTR 30.0%
ACCCTAAAAAAGAACAAGAT+TGG - chr2_4:28816905-28816924 None:intergenic 30.0%
! ATAGATTGGGTTAGATAAAG+TGG - chr2_4:28816965-28816984 None:intergenic 30.0%
!! TGCTTACCTTAATTTGTTGT+TGG - chr2_4:28816997-28817016 None:intergenic 30.0%
! TTGAACAGTGAAAGTGTAAA+TGG + chr2_4:28817116-28817135 Msa0323990:intron 30.0%
AGAATGAAAATAAACCTTGG+GGG - chr2_4:28817307-28817326 None:intergenic 30.0%
!! ATTGAAGAAGGTTGTCATTT+TGG + chr2_4:28817470-28817489 Msa0323990:intron 30.0%
!!! TCATTTTGGTTAGAAGAAAG+TGG + chr2_4:28817484-28817503 Msa0323990:intron 30.0%
GTCATAAAATTATAGGCATC+TGG + chr2_4:28817582-28817601 Msa0323990:intron 30.0%
ATAAAATTATAGGCATCTGG+CGG + chr2_4:28817585-28817604 Msa0323990:intron 30.0%
GGAGATGAAACAATTATTTG+AGG + chr2_4:28817708-28817727 Msa0323990:intron 30.0%
GATGAAACAATTATTTGAGG+CGG + chr2_4:28817711-28817730 Msa0323990:intron 30.0%
TACAATTTCAAGACCCAAAA+TGG + chr2_4:28817816-28817835 Msa0323990:intron 30.0%
! AAAGAGTAAACCACCATTTT+GGG - chr2_4:28817832-28817851 None:intergenic 30.0%
!!! GAGTTTTGAAAAGATAATGG+TGG + chr2_4:28817890-28817909 Msa0323990:intron 30.0%
TCATAATTGTTAACCCACTT+GGG + chr2_4:28818107-28818126 Msa0323990:intron 30.0%
! CAGGGTACTTGTAAAAATTA+AGG + chr2_4:28818383-28818402 Msa0323990:CDS 30.0%
AATTAAAGAACGATCATCGA+AGG - chr2_4:28818570-28818589 None:intergenic 30.0%
!!! TGAAAAGCATCTTCTTTTGA+AGG + chr2_4:28818710-28818729 Msa0323990:CDS 30.0%
AAAGAGGAATTACCTTTATC+AGG - chr2_4:28818803-28818822 None:intergenic 30.0%
GCATATATTAAACCAGTCAA+TGG - chr2_4:28819217-28819236 None:intergenic 30.0%
ATATATGCTGCAGATTGAAA+AGG + chr2_4:28819229-28819248 Msa0323990:intron 30.0%
! ATGTTTTGCCAGAATATGTT+CGG + chr2_4:28819505-28819524 Msa0323990:intron 30.0%
GAACCATATTCATGAGAAAT+AGG - chr2_4:28819557-28819576 None:intergenic 30.0%
! TTTTGTGTTCGTCTTACAAT+TGG - chr2_4:28819810-28819829 None:intergenic 30.0%
! ATCACTTGGTAATCAAAACA+AGG - chr2_4:28819874-28819893 None:intergenic 30.0%
!! ACTATGAAAGGTATCTTTCT+TGG + chr2_4:28820141-28820160 Msa0323990:three_prime_UTR 30.0%
!! CTATGAAAGGTATCTTTCTT+GGG + chr2_4:28820142-28820161 Msa0323990:three_prime_UTR 30.0%
TTGGAGAGAGTAGATAGATT+GGG - chr2_4:28816978-28816997 None:intergenic 35.0%
CTCTCTCCAACAACAAATTA+AGG + chr2_4:28816988-28817007 Msa0323990:five_prime_UTR 35.0%
!! TTGTTGTTACAGAGACGTTT+TGG - chr2_4:28817051-28817070 None:intergenic 35.0%
GAATGAAACTGAACACTTGA+TGG - chr2_4:28817207-28817226 None:intergenic 35.0%
TTTGACAATCAAAGCCTTGA+AGG - chr2_4:28817268-28817287 None:intergenic 35.0%
TCTTCTTGATTGTGCATTTG+TGG + chr2_4:28817513-28817532 Msa0323990:intron 35.0%
AATTGTTTCATCTCCATTGG+AGG - chr2_4:28817703-28817722 None:intergenic 35.0%
TTTGGTATTTCGCAAATTCG+AGG + chr2_4:28817778-28817797 Msa0323990:intron 35.0%
AATTTCAAGACCCAAAATGG+TGG + chr2_4:28817819-28817838 Msa0323990:intron 35.0%
! CAAAGAGTAAACCACCATTT+TGG - chr2_4:28817833-28817852 None:intergenic 35.0%
GCGGTTTATTTATTAACCAG+AGG + chr2_4:28818041-28818060 Msa0323990:intron 35.0%
CTCATAATTGTTAACCCACT+TGG + chr2_4:28818106-28818125 Msa0323990:intron 35.0%
ATTGTGAAAAGACGGAACTT+TGG - chr2_4:28818287-28818306 None:intergenic 35.0%
CCTTCACACTAATTTCAACT+TGG - chr2_4:28818518-28818537 None:intergenic 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG + chr2_4:28818515-28818534 Msa0323990:CDS 35.0%
GTTGTCTATTCAAAGTATGC+TGG + chr2_4:28818666-28818685 Msa0323990:CDS 35.0%
TTGAAGGATGATGACATTGT+TGG + chr2_4:28818726-28818745 Msa0323990:CDS 35.0%
CCTTGATATCATCAGTTTCA+AGG - chr2_4:28818755-28818774 None:intergenic 35.0%
CCTTGAAACTGATGATATCA+AGG + chr2_4:28818752-28818771 Msa0323990:CDS 35.0%
ATCAGGACTCTATCATTCAA+GGG - chr2_4:28818786-28818805 None:intergenic 35.0%
TATCAGGACTCTATCATTCA+AGG - chr2_4:28818787-28818806 None:intergenic 35.0%
GAATGATAGAGTCCTGATAA+AGG + chr2_4:28818788-28818807 Msa0323990:CDS 35.0%
TATTCTTGTTGGATCCAAGT+TGG + chr2_4:28818836-28818855 Msa0323990:intron 35.0%
CGAAATTGAACCACTCAATA+TGG + chr2_4:28818900-28818919 Msa0323990:intron 35.0%
ACTCACTTATCCATATTGAG+TGG - chr2_4:28818913-28818932 None:intergenic 35.0%
CACGCATGGATAACAATTTA+TGG + chr2_4:28818964-28818983 Msa0323990:intron 35.0%
!!! TGAGATGTCTTACTTTTTGG+AGG + chr2_4:28819027-28819046 Msa0323990:intron 35.0%
TGCAAATTATCTGATCGTCA+AGG + chr2_4:28819073-28819092 Msa0323990:intron 35.0%
! TTTATTTCTCATACGCGAGT+AGG + chr2_4:28819133-28819152 Msa0323990:intron 35.0%
AGTAGGATTCAAAGACACTA+TGG + chr2_4:28819150-28819169 Msa0323990:intron 35.0%
AGACCTCAACAAAACATAAG+AGG - chr2_4:28819176-28819195 None:intergenic 35.0%
AAGCTTACTGTTCCAAATGA+AGG - chr2_4:28819308-28819327 None:intergenic 35.0%
! TCAAACAAAGAAGGCATAAC+AGG - chr2_4:28819332-28819351 None:intergenic 35.0%
! TTTTAATCAACGTCACTCGT+AGG + chr2_4:28819475-28819494 Msa0323990:intron 35.0%
TTGTAATACTTGGATGTCAC+AGG + chr2_4:28819607-28819626 Msa0323990:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG + chr2_4:28819750-28819769 Msa0323990:CDS 35.0%
AGACGAACACAAAATCTCTT+AGG + chr2_4:28819816-28819835 Msa0323990:intron 35.0%
GATTACCAAGTGATTCCTAA+CGG + chr2_4:28819880-28819899 Msa0323990:three_prime_UTR 35.0%
ATTACCAAGTGATTCCTAAC+GGG + chr2_4:28819881-28819900 Msa0323990:three_prime_UTR 35.0%
CTCAAATATTGCTCATCTGA+TGG - chr2_4:28820012-28820031 None:intergenic 35.0%
GTTGGAGAGAGTAGATAGAT+TGG - chr2_4:28816979-28816998 None:intergenic 40.0%
CAGCATCATCAATTTCAACG+AGG + chr2_4:28817154-28817173 Msa0323990:CDS 40.0%
TTCATTCTGCTCGACATGTT+AGG + chr2_4:28817220-28817239 Msa0323990:CDS 40.0%
! AACAATTATTTGAGGCGGTG+TGG + chr2_4:28817716-28817735 Msa0323990:intron 40.0%
! ACAATTATTTGAGGCGGTGT+GGG + chr2_4:28817717-28817736 Msa0323990:intron 40.0%
TTTCGCAAATTCGAGGTCAT+TGG + chr2_4:28817785-28817804 Msa0323990:intron 40.0%
AATTGTTAACCCACTTGGGT+TGG + chr2_4:28818111-28818130 Msa0323990:intron 40.0%
!! ATTATCCTGGGTGCTGATTT+CGG + chr2_4:28818190-28818209 Msa0323990:intron 40.0%
TACACTGCAATCAAGCCTTT+GGG + chr2_4:28818357-28818376 Msa0323990:CDS 40.0%
TTGGAGAAGGAAAGACACTT+GGG + chr2_4:28818487-28818506 Msa0323990:CDS 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG + chr2_4:28818636-28818655 Msa0323990:intron 40.0%
TTCAAAGTATGCTGGTACTG+AGG + chr2_4:28818674-28818693 Msa0323990:CDS 40.0%
!! TGGCCTCTTATGTTTTGTTG+AGG + chr2_4:28819170-28819189 Msa0323990:intron 40.0%
! GCTTTTAGATAGCCATTGAC+TGG + chr2_4:28819202-28819221 Msa0323990:intron 40.0%
TATGCTGCAGATTGAAAAGG+CGG + chr2_4:28819232-28819251 Msa0323990:intron 40.0%
AAGGCGGAAGAAAAAACTTC+AGG + chr2_4:28819248-28819267 Msa0323990:CDS 40.0%
ACCAAGGAGAAACCTTCATT+TGG + chr2_4:28819293-28819312 Msa0323990:CDS 40.0%
TCCAAATGAAGGTTTCTCCT+TGG - chr2_4:28819297-28819316 None:intergenic 40.0%
TAAACGTGCCGAACATATTC+TGG - chr2_4:28819516-28819535 None:intergenic 40.0%
TAATACTTGGATGTCACAGG+TGG + chr2_4:28819610-28819629 Msa0323990:intron 40.0%
AAACCTTTGACTGTTACTCC+TGG + chr2_4:28819674-28819693 Msa0323990:CDS 40.0%
AACCTTTGACTGTTACTCCT+GGG + chr2_4:28819675-28819694 Msa0323990:CDS 40.0%
GAAGTCATTACCAGCGTATT+TGG - chr2_4:28819717-28819736 None:intergenic 40.0%
! ATACGCTGGTAATGACTTCA+AGG + chr2_4:28819718-28819737 Msa0323990:CDS 40.0%
! TACGCTGGTAATGACTTCAA+GGG + chr2_4:28819719-28819738 Msa0323990:CDS 40.0%
AATGACTTCAAGGGCAAAGA+TGG + chr2_4:28819728-28819747 Msa0323990:CDS 40.0%
CATCTGGTTGTTGCGTTAAT+CGG + chr2_4:28819919-28819938 Msa0323990:three_prime_UTR 40.0%
! CGATAAAGACGCAGTTCTAA+TGG + chr2_4:28820089-28820108 Msa0323990:three_prime_UTR 40.0%
GTTCTAATGGAAACTCGATG+TGG + chr2_4:28820102-28820121 Msa0323990:three_prime_UTR 40.0%
GCATCTCTAGGTACTATGAA+AGG + chr2_4:28820129-28820148 Msa0323990:three_prime_UTR 40.0%
!! TGAAAGGTATCTTTCTTGGG+AGG + chr2_4:28820145-28820164 Msa0323990:three_prime_UTR 40.0%
TGATGGTCGAAGTCCTTCAA+AGG - chr2_4:28817190-28817209 None:intergenic 45.0%
TCTGCTCGACATGTTAGGAT+TGG + chr2_4:28817225-28817244 Msa0323990:CDS 45.0%
ATGATACACACCACCTCCAA+TGG + chr2_4:28817687-28817706 Msa0323990:intron 45.0%
TGTTTCATCTCCATTGGAGG+TGG - chr2_4:28817700-28817719 None:intergenic 45.0%
! GTCTCTGGTTCGATTATCCT+GGG + chr2_4:28818178-28818197 Msa0323990:intron 45.0%
!! TTCGGTGGGCTAGTTTAGTT+TGG + chr2_4:28818208-28818227 Msa0323990:intron 45.0%
TTGATTGCAGTGTACTGCAC+AGG - chr2_4:28818351-28818370 None:intergenic 45.0%
GTACACTGCAATCAAGCCTT+TGG + chr2_4:28818356-28818375 Msa0323990:intron 45.0%
AATCAAGCCTTTGGGTGACA+GGG + chr2_4:28818365-28818384 Msa0323990:CDS 45.0%
CAGAAGAGAAGACACAGAGT+GGG + chr2_4:28818409-28818428 Msa0323990:CDS 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG - chr2_4:28818444-28818463 None:intergenic 45.0%
AGTGCTCAAACAAAGCCTCA+AGG + chr2_4:28818447-28818466 Msa0323990:CDS 45.0%
GTGCTCAAACAAAGCCTCAA+GGG + chr2_4:28818448-28818467 Msa0323990:CDS 45.0%
TGCTCAAACAAAGCCTCAAG+GGG + chr2_4:28818449-28818468 Msa0323990:CDS 45.0%
GTTGGAGAAGGAAAGACACT+TGG + chr2_4:28818486-28818505 Msa0323990:CDS 45.0%
GAATAGACAACTTGTGCACC+TGG - chr2_4:28818657-28818676 None:intergenic 45.0%
! AAAGTATGCTGGTACTGAGG+TGG + chr2_4:28818677-28818696 Msa0323990:CDS 45.0%
GCGGAAGAAAAAACTTCAGG+CGG + chr2_4:28819251-28819270 Msa0323990:CDS 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG + chr2_4:28819268-28819287 Msa0323990:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG + chr2_4:28819277-28819296 Msa0323990:CDS 45.0%
TTCCCAGGAGTAACAGTCAA+AGG - chr2_4:28819680-28819699 None:intergenic 45.0%
GTTCTGTACTCCAAATACGC+TGG + chr2_4:28819704-28819723 Msa0323990:CDS 45.0%
CATGACATCTGAACTCCTCA+AGG - chr2_4:28819768-28819787 None:intergenic 45.0%
CTTGAGGAGTTCAGATGTCA+TGG + chr2_4:28819766-28819785 Msa0323990:CDS 45.0%
TGTCATGGCTGTACTCTCTT+AGG + chr2_4:28819781-28819800 Msa0323990:CDS 45.0%
AGTTCCCGTTAGGAATCACT+TGG - chr2_4:28819888-28819907 None:intergenic 45.0%
AAGTGATTCCTAACGGGAAC+TGG + chr2_4:28819887-28819906 Msa0323990:three_prime_UTR 45.0%
AGTGATTCCTAACGGGAACT+GGG + chr2_4:28819888-28819907 Msa0323990:three_prime_UTR 45.0%
TTGAAAACCCAGTTCCCGTT+AGG - chr2_4:28819898-28819917 None:intergenic 45.0%
!! GAACTGGGTTTTCAAGCATC+TGG + chr2_4:28819903-28819922 Msa0323990:three_prime_UTR 45.0%
!! CGATGTGGTTTTGCATCTCT+AGG + chr2_4:28820117-28820136 Msa0323990:three_prime_UTR 45.0%
!!! TAATGTTTTTTTTTTTTTTT+TGG + chr2_4:28817382-28817401 Msa0323990:intron 5.0%
!!! AATGTTTTTTTTTTTTTTTT+GGG + chr2_4:28817383-28817402 Msa0323990:intron 5.0%
!! TTAAACTAAATTAAATAAAA+TGG - chr2_4:28817439-28817458 None:intergenic 5.0%
!! AGGAGCGTTGCATCCTTTGA+AGG + chr2_4:28817174-28817193 Msa0323990:CDS 50.0%
! GGATTGGTAATCCTGCTCGT+AGG + chr2_4:28817241-28817260 Msa0323990:CDS 50.0%
TGTCTAAATGCCCCCTTCAG+AGG - chr2_4:28817744-28817763 None:intergenic 50.0%
ATCGAACCAGAGACCTTGAG+AGG - chr2_4:28818172-28818191 None:intergenic 50.0%
! GGTCTCTGGTTCGATTATCC+TGG + chr2_4:28818177-28818196 Msa0323990:intron 50.0%
CAATCAAGCCTTTGGGTGAC+AGG + chr2_4:28818364-28818383 Msa0323990:CDS 50.0%
ACAAGTACCCTGTCACCCAA+AGG - chr2_4:28818375-28818394 None:intergenic 50.0%
GCAGAAGAGAAGACACAGAG+TGG + chr2_4:28818408-28818427 Msa0323990:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+GGG + chr2_4:28818450-28818469 Msa0323990:CDS 50.0%
! GGTACTGAGGTGGACTTCAA+TGG + chr2_4:28818687-28818706 Msa0323990:CDS 50.0%
! GTTGGATCCAAGTTGGCGAA+TGG + chr2_4:28818843-28818862 Msa0323990:intron 50.0%
! CGGTTGATATTGCACACGCA+TGG + chr2_4:28818950-28818969 Msa0323990:intron 50.0%
ATGTCACAGGTGGTAGCAGT+TGG + chr2_4:28819620-28819639 Msa0323990:intron 50.0%
GAGTACAGAACTGTGTTCCC+AGG - chr2_4:28819695-28819714 None:intergenic 50.0%
TCCTGCTCGTAGGTCCTTCA+AGG + chr2_4:28817251-28817270 Msa0323990:CDS 55.0%
AACCTTGGGGGCAACAACAG+TGG - chr2_4:28817295-28817314 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG + chr2_4:28818116-28818135 Msa0323990:intron 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG + chr2_4:28818125-28818144 Msa0323990:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG + chr2_4:28818130-28818149 Msa0323990:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG + chr2_4:28818131-28818150 Msa0323990:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+TGG + chr2_4:28818138-28818157 Msa0323990:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr2_4:28818158-28818177 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr2_4:28818156-28818175 Msa0323990:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+TGG + chr2_4:28818163-28818182 Msa0323990:intron 55.0%
!! ATCCTGGGTGCTGATTTCGG+TGG + chr2_4:28818193-28818212 Msa0323990:intron 55.0%
!! TCCTGGGTGCTGATTTCGGT+GGG + chr2_4:28818194-28818213 Msa0323990:intron 55.0%
AACAAAGCCTCAAGGGGGTG+AGG + chr2_4:28818455-28818474 Msa0323990:CDS 55.0%
! GAGGTGGTTGCTGTTGGAGA+AGG + chr2_4:28818474-28818493 Msa0323990:CDS 55.0%
AGGTGGTAGCAGTTGGTCCT+GGG + chr2_4:28819627-28819646 Msa0323990:intron 55.0%
GCCTTGAAGGACCTACGAGC+AGG - chr2_4:28817255-28817274 None:intergenic 60.0%
CTTGGGGGCAACAACAGTGG+CGG - chr2_4:28817292-28817311 None:intergenic 60.0%
ACCACCAGGCCAACCCAAGT+GGG - chr2_4:28818123-28818142 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG - chr2_4:28818124-28818143 None:intergenic 60.0%
GGTCCCAAGCCAATACCACC+AGG - chr2_4:28818137-28818156 None:intergenic 60.0%
AAAGCCTCAAGGGGGTGAGG+TGG + chr2_4:28818458-28818477 Msa0323990:CDS 60.0%
! TCCAAGTTGGCGAATGGCCG+CGG + chr2_4:28818849-28818868 Msa0323990:intron 60.0%
CAGGTGGTAGCAGTTGGTCC+TGG + chr2_4:28819626-28819645 Msa0323990:intron 60.0%
AGCAGTTGGTCCTGGGCTTG+TGG + chr2_4:28819634-28819653 Msa0323990:CDS 60.0%
TGGTCCTGGGCTTGTGGATG+AGG + chr2_4:28819640-28819659 Msa0323990:CDS 60.0%
CCTTCCTCATCCACAAGCCC+AGG - chr2_4:28819647-28819666 None:intergenic 60.0%
CCTGGGCTTGTGGATGAGGA+AGG + chr2_4:28819644-28819663 Msa0323990:CDS 60.0%
CGCCACTGTTGTTGCCCCCA+AGG + chr2_4:28817290-28817309 Msa0323990:CDS 65.0%
AGGCGGTGTGGGTCCTCTGA+AGG + chr2_4:28817728-28817747 Msa0323990:intron 65.0%
GGCGGTGTGGGTCCTCTGAA+GGG + chr2_4:28817729-28817748 Msa0323990:intron 65.0%
! GCGGTGTGGGTCCTCTGAAG+GGG + chr2_4:28817730-28817749 Msa0323990:intron 65.0%
! CGGTGTGGGTCCTCTGAAGG+GGG + chr2_4:28817731-28817750 Msa0323990:intron 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + chr2_4:28818119-28818138 Msa0323990:intron 65.0%
GCCCACCGAAATCAGCACCC+AGG - chr2_4:28818198-28818217 None:intergenic 65.0%
GCAACCACCTCACCCCCTTG+AGG - chr2_4:28818465-28818484 None:intergenic 65.0%
GGGGGTGAGGTGGTTGCTGT+TGG + chr2_4:28818468-28818487 Msa0323990:CDS 65.0%
ACCGCGGCCATTCGCCAACT+TGG - chr2_4:28818853-28818872 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 28816791 28820215 28816791 ID=Msa0323990;Name=Msa0323990
chr2_4 mRNA 28816791 28820215 28816791 ID=Msa0323990-mRNA-1;Parent=Msa0323990;Name=Msa0323990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=230|1|1|1|0.66|0.57|7|378|254
chr2_4 exon 28816791 28817009 28816791 ID=Msa0323990-mRNA-1:exon:9846;Parent=Msa0323990-mRNA-1
chr2_4 exon 28817124 28817311 28817124 ID=Msa0323990-mRNA-1:exon:9847;Parent=Msa0323990-mRNA-1
chr2_4 exon 28818357 28818536 28818357 ID=Msa0323990-mRNA-1:exon:9848;Parent=Msa0323990-mRNA-1
chr2_4 exon 28818654 28818809 28818654 ID=Msa0323990-mRNA-1:exon:9849;Parent=Msa0323990-mRNA-1
chr2_4 exon 28819242 28819319 28819242 ID=Msa0323990-mRNA-1:exon:9850;Parent=Msa0323990-mRNA-1
chr2_4 exon 28819629 28819802 28819629 ID=Msa0323990-mRNA-1:exon:9851;Parent=Msa0323990-mRNA-1
chr2_4 exon 28819838 28820215 28819838 ID=Msa0323990-mRNA-1:exon:9852;Parent=Msa0323990-mRNA-1
chr2_4 five_prime_UTR 28816791 28817009 28816791 ID=Msa0323990-mRNA-1:five_prime_utr;Parent=Msa0323990-mRNA-1
chr2_4 five_prime_UTR 28817124 28817134 28817124 ID=Msa0323990-mRNA-1:five_prime_utr;Parent=Msa0323990-mRNA-1
chr2_4 CDS 28817135 28817311 28817135 ID=Msa0323990-mRNA-1:cds;Parent=Msa0323990-mRNA-1
chr2_4 CDS 28818357 28818536 28818357 ID=Msa0323990-mRNA-1:cds;Parent=Msa0323990-mRNA-1
chr2_4 CDS 28818654 28818809 28818654 ID=Msa0323990-mRNA-1:cds;Parent=Msa0323990-mRNA-1
chr2_4 CDS 28819242 28819319 28819242 ID=Msa0323990-mRNA-1:cds;Parent=Msa0323990-mRNA-1
chr2_4 CDS 28819629 28819802 28819629 ID=Msa0323990-mRNA-1:cds;Parent=Msa0323990-mRNA-1
chr2_4 three_prime_UTR 28819838 28820215 28819838 ID=Msa0323990-mRNA-1:three_prime_utr;Parent=Msa0323990-mRNA-1
Gene Sequence

>Msa0323990

ATGGCTTCTTCTCAGTTAACAGCATCATCAATTTCAACGAGGAGCGTTGCATCCTTTGAAGGACTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGTACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTGTAAAAATTAAGGAAGCAGAAGAGAAGACACAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTCAATGGTGAAAAGCATCTTCTTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTGATAAAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTGGTAGCAGTTGGTCCTGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTACTCCTGGGAACACAGTTCTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>Msa0323990

MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAPKYTAIKPLGDRVLVKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLLLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS*