AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712500 MtrunA17_Chr5g0397071 93.220 354 21 1 1 354 1 351 0.0 613
Msa0712500 MtrunA17_Chr1g0169451 44.589 231 96 5 139 352 149 364 1.09e-51 175
Msa0712500 MtrunA17_Chr7g0249231 36.364 209 116 4 148 350 82 279 9.89e-28 110
Msa0712500 MtrunA17_Chr1g0210221 35.135 222 118 5 141 345 7 219 1.16e-26 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712500 AT1G64150.1 70.508 295 72 4 73 353 76 369 1.16e-121 355
Msa0712500 AT4G13590.1 43.946 223 109 5 139 352 143 358 2.60e-51 174
Msa0712500 AT4G13590.2 43.946 223 109 5 139 352 143 358 2.71e-51 174
Msa0712500 AT5G36290.1 35.681 213 121 3 144 350 87 289 8.94e-29 113
Msa0712500 AT5G36290.2 35.681 213 121 3 144 350 87 289 8.94e-29 113
Msa0712500 AT1G68650.1 34.842 221 131 3 135 345 1 218 2.25e-26 105
Msa0712500 AT1G25520.1 33.929 224 119 6 141 345 7 220 2.40e-23 97.1

Find 76 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTCAATTCCTATATT+TGG 0.111357 5_1:+4338096 Msa0712500:CDS
ATTTCTAATTCCTTCTTCTT+TGG 0.154453 5_1:-4337621 None:intergenic
TTTCTAATTCCTTCTTCTTT+GGG 0.177250 5_1:-4337620 None:intergenic
TGGTGGCTCTTAAATGGTTT+TGG 0.262359 5_1:-4337681 None:intergenic
GAAAAGTGGTGGCTCTTAAA+TGG 0.270841 5_1:-4337687 None:intergenic
GCGGGACTTATCCAAGAAAT+TGG 0.296916 5_1:+4337526 Msa0712500:five_prime_UTR
TGCAGCAGCTTCTTCACCCT+TGG 0.304179 5_1:+4340902 Msa0712500:CDS
TTGACGAACTCTTGCCGTTC+AGG 0.307648 5_1:+4339372 Msa0712500:CDS
ATCGACTTCAGGTGTACTTC+GGG 0.314626 5_1:+4340231 Msa0712500:intron
GTACTTGGTGGCTCTTTACT+AGG 0.355968 5_1:+4341428 Msa0712500:CDS
TATTGCTGCTGTTTGCCTAT+TGG 0.359627 5_1:+4339998 Msa0712500:CDS
TCACCCTTGGGAGTCATAGC+TGG 0.372547 5_1:+4340915 Msa0712500:CDS
CTTAATGGACATAGTTTATG+AGG 0.375338 5_1:-4342236 None:intergenic
GCAGCAGCTTCTTCACCCTT+GGG 0.388248 5_1:+4340903 Msa0712500:CDS
CGCACTTCAACATACTTATC+CGG 0.403598 5_1:+4338044 Msa0712500:CDS
CTATTGTACAATTTCAAATA+CGG 0.406878 5_1:-4342127 None:intergenic
TTGAGATTGCAGAGAGGAGG+AGG 0.411369 5_1:-4337753 None:intergenic
TTGCAGAGAGGAGGAGGAGG+AGG 0.420498 5_1:-4337747 None:intergenic
TCACCAACATCTCCAAATAT+AGG 0.423227 5_1:-4338108 None:intergenic
ATTCCTATATTTGGAGATGT+TGG 0.440338 5_1:+4338105 Msa0712500:CDS
AATCGACTTCAGGTGTACTT+CGG 0.440864 5_1:+4340230 Msa0712500:intron
TTCTAATTCCTTCTTCTTTG+GGG 0.441832 5_1:-4337619 None:intergenic
AGATTGCAGAGAGGAGGAGG+AGG 0.442610 5_1:-4337750 None:intergenic
CTTCGGGGTCTCTACCCTGC+TGG 0.449149 5_1:+4340247 Msa0712500:CDS
ACACATTCTGTGTTGCCAAT+TGG 0.451928 5_1:-4337957 None:intergenic
ACAGCAGCAATATCATCAAT+AGG 0.453364 5_1:-4339987 None:intergenic
TACCGATTCTCAATGCCAAT+TGG 0.470082 5_1:+4337942 Msa0712500:CDS
TGGTCATGGTGTTGCAACTT+TGG 0.476822 5_1:+4340947 Msa0712500:CDS
TGCCAATTGGCATTGAGAAT+CGG 0.485672 5_1:-4337944 None:intergenic
CACTAGATGAGGCATCCAGC+AGG 0.488503 5_1:-4340262 None:intergenic
AAGGTTATTGCCTACATTGG+AGG 0.491460 5_1:+4342075 Msa0712500:intron
TATATGCAGATAGCCGTACT+TGG 0.497430 5_1:+4341413 Msa0712500:intron
ACTTCAGCACTCACCAATTG+TGG 0.507264 5_1:-4340565 None:intergenic
TAGTAAAGAGCCACCAAGTA+CGG 0.507339 5_1:-4341426 None:intergenic
TTGAAGGTTATTGCCTACAT+TGG 0.509870 5_1:+4342072 Msa0712500:intron
GGGAGTCATAGCTGGATCAC+TGG 0.523241 5_1:+4340923 Msa0712500:CDS
TCTTCTGATGATAGTGATGA+TGG 0.527094 5_1:+4337979 Msa0712500:CDS
GTCATAGCTGGATCACTGGC+TGG 0.529444 5_1:+4340927 Msa0712500:CDS
GCTGGATCACTGGCTGGTCA+TGG 0.529965 5_1:+4340933 Msa0712500:CDS
ATTGATCAACGGCTAACACT+TGG 0.532708 5_1:+4342328 Msa0712500:three_prime_UTR
GATGTTGGTGACTTAAGCAC+AGG 0.539954 5_1:+4338120 Msa0712500:CDS
ACTGTCATATCTGTCGCTCT+AGG 0.541366 5_1:+4339332 Msa0712500:CDS
TACTTGGTGGCTCTTTACTA+GGG 0.542656 5_1:+4341429 Msa0712500:CDS
TCTAATTCCTTCTTCTTTGG+GGG 0.542864 5_1:-4337618 None:intergenic
AATTTGAGATTGCAGAGAGG+AGG 0.544064 5_1:-4337756 None:intergenic
AAATCAGAAGCAGCAACTGC+CGG 0.549140 5_1:-4338063 None:intergenic
AAAATCAGATGATGAACAGA+AGG 0.549624 5_1:+4340292 Msa0712500:CDS
AAAGAGCACACCTCCAATGT+AGG 0.554559 5_1:-4342085 None:intergenic
GGGTGAAGAAGCTGCTGCAA+GGG 0.562488 5_1:-4340898 None:intergenic
TTTATGAGGATTACAATGAA+AGG 0.566528 5_1:-4342222 None:intergenic
AGGGTGAAGAAGCTGCTGCA+AGG 0.572131 5_1:-4340899 None:intergenic
ATGCAGATAGCCGTACTTGG+TGG 0.574843 5_1:+4341416 Msa0712500:intron
TTAGCAGCTAGAAATTCAGC+TGG 0.576869 5_1:+4338867 Msa0712500:CDS
TGATCCAGCTATGACTCCCA+AGG 0.589560 5_1:-4340919 None:intergenic
TTAGCTAGATGATTGATCAA+CGG 0.594097 5_1:+4342317 Msa0712500:three_prime_UTR
ACAAAGCAAGGTGAGGTGGT+TGG 0.597314 5_1:+4337493 Msa0712500:five_prime_UTR
TTCGGCAACAGAGTCATGAT+CGG 0.598041 5_1:-4337917 None:intergenic
AAAAGTGCTGACAATTGTGC+TGG 0.600725 5_1:-4340499 None:intergenic
GATAACAAAGCAAGGTGAGG+TGG 0.601961 5_1:+4337489 Msa0712500:five_prime_UTR
GCAATATAAGCTATGTACAA+AGG 0.605103 5_1:+4342164 Msa0712500:three_prime_UTR
ATCAGATGATGAACAGAAGG+AGG 0.612938 5_1:+4340295 Msa0712500:CDS
ACTAGATGAGGCATCCAGCA+GGG 0.613791 5_1:-4340261 None:intergenic
AGGTGGTGAAAGATGAAAAG+TGG 0.629418 5_1:-4337701 None:intergenic
GGAAGAGGATATAAGTGAGG+TGG 0.632300 5_1:-4337718 None:intergenic
GGGAAAGAGATAACAAAGCA+AGG 0.633261 5_1:+4337481 None:intergenic
GGTAATTTGAGATTGCAGAG+AGG 0.647329 5_1:-4337759 None:intergenic
AATGGAAGAGGATATAAGTG+AGG 0.651009 5_1:-4337721 None:intergenic
GATCCAGCTATGACTCCCAA+GGG 0.660586 5_1:-4340918 None:intergenic
GGTGGTTGGTTAATGTGACG+CGG 0.670196 5_1:+4337507 Msa0712500:five_prime_UTR
ATGTTGAAGTGCGAAGAACG+CGG 0.678767 5_1:-4338034 None:intergenic
TCGACTTCAGGTGTACTTCG+GGG 0.682056 5_1:+4340232 Msa0712500:intron
GTGGTTGGTTAATGTGACGC+GGG 0.685081 5_1:+4337508 Msa0712500:five_prime_UTR
AGAGATAACAAAGCAAGGTG+AGG 0.690848 5_1:+4337486 Msa0712500:five_prime_UTR
ATGTTGGTGAATTGAAAGCG+TGG 0.711543 5_1:-4337783 None:intergenic
TGGTGAAAGATGAAAAGTGG+TGG 0.722848 5_1:-4337698 None:intergenic
TTGGTGAATTGAAAGCGTGG+TGG 0.759701 5_1:-4337780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCATTTGTAATAATAT+TGG - chr5_1:4338210-4338229 None:intergenic 10.0%
!! CTTGAATAATAAAAATAAAT+AGG - chr5_1:4339269-4339288 None:intergenic 10.0%
!!! CAAAATTTTTAATAACTTAA+TGG - chr5_1:4342254-4342273 None:intergenic 10.0%
!! TTGTAATTATTAAAGTAACA+GGG - chr5_1:4338169-4338188 None:intergenic 15.0%
!! ATTGTAATTATTAAAGTAAC+AGG - chr5_1:4338170-4338189 None:intergenic 15.0%
!!! GAAAGATAATTATTTTTTAG+AGG + chr5_1:4339221-4339240 Msa0712500:intron 15.0%
!! TTGTAAAAATTAACATGAAA+AGG + chr5_1:4339439-4339458 Msa0712500:intron 15.0%
!! TGTAAAAATTAACATGAAAA+GGG + chr5_1:4339440-4339459 Msa0712500:intron 15.0%
!! ATTATGATAAAACTGTTATA+TGG - chr5_1:4339659-4339678 None:intergenic 15.0%
!!! ATAATATTTTCTAGAAAACA+TGG - chr5_1:4339780-4339799 None:intergenic 15.0%
!! ACAATAAAATATAAATCCAA+AGG - chr5_1:4339822-4339841 None:intergenic 15.0%
!!! TTTTAAAACAGAAAATGTAA+AGG - chr5_1:4340188-4340207 None:intergenic 15.0%
!! GTGAATAGAATTAAAAAAAT+GGG - chr5_1:4340374-4340393 None:intergenic 15.0%
!! AGTGAATAGAATTAAAAAAA+TGG - chr5_1:4340375-4340394 None:intergenic 15.0%
!! GAATTTCATTAAAATAAGTA+TGG + chr5_1:4341753-4341772 Msa0712500:intron 15.0%
!!! ATAGCATTAAAATTTTCATA+TGG - chr5_1:4341911-4341930 None:intergenic 15.0%
!!! TATACTTTAATTTCTTTTGA+AGG + chr5_1:4342056-4342075 Msa0712500:intron 15.0%
!! TTGAATTCAATTCCTATATT+TGG + chr5_1:4338096-4338115 Msa0712500:CDS 20.0%
!! TATTGATGAGATAAAAATGA+AGG + chr5_1:4338790-4338809 Msa0712500:intron 20.0%
!! ATTGATGAGATAAAAATGAA+GGG + chr5_1:4338791-4338810 Msa0712500:intron 20.0%
!! ACAACTTAGAATAATGAAAT+TGG + chr5_1:4339052-4339071 Msa0712500:intron 20.0%
!!! TCAATTAATTTGCTTGTTTT+TGG + chr5_1:4339299-4339318 Msa0712500:intron 20.0%
!! AAATAGAAACATAGAGATAA+AGG - chr5_1:4339403-4339422 None:intergenic 20.0%
!!! TCTATGTTTCTATTTTTGAA+TGG + chr5_1:4339408-4339427 Msa0712500:intron 20.0%
!!! AATACAACATCAAATTCTTT+TGG + chr5_1:4339676-4339695 Msa0712500:intron 20.0%
!!! ATACAACATCAAATTCTTTT+GGG + chr5_1:4339677-4339696 Msa0712500:intron 20.0%
!! TAAAATATAAATCCAAAGGA+AGG - chr5_1:4339818-4339837 None:intergenic 20.0%
!! GTATTACAAGTTATAAAGAA+TGG + chr5_1:4339908-4339927 Msa0712500:intron 20.0%
!!! AACACAAATGCAATTTTTTT+GGG - chr5_1:4340144-4340163 None:intergenic 20.0%
!!! AAACACAAATGCAATTTTTT+TGG - chr5_1:4340145-4340164 None:intergenic 20.0%
!!! TAAAAAAGTACTTGTATATC+TGG - chr5_1:4340349-4340368 None:intergenic 20.0%
!!! CGATTTGTAATAGAATTTTA+TGG - chr5_1:4340604-4340623 None:intergenic 20.0%
!!! ATGTAATAGTTTGTTTGATA+GGG - chr5_1:4340686-4340705 None:intergenic 20.0%
!!! TTTTGTTTTTTGATCTTGTT+GGG - chr5_1:4341246-4341265 None:intergenic 20.0%
!!! ATTTTGTTTTTTGATCTTGT+TGG - chr5_1:4341247-4341266 None:intergenic 20.0%
!! TAAACTTTCCATAATAGTTA+AGG - chr5_1:4341300-4341319 None:intergenic 20.0%
!! TGTATATCTCTAAATAACTT+TGG + chr5_1:4341368-4341387 Msa0712500:intron 20.0%
!! GTATATCTCTAAATAACTTT+GGG + chr5_1:4341369-4341388 Msa0712500:intron 20.0%
!! AGATTCATTAAACAATGTAA+AGG + chr5_1:4341608-4341627 Msa0712500:intron 20.0%
!! AAAAAACTATCTTCTTCAAA+AGG + chr5_1:4341675-4341694 Msa0712500:intron 20.0%
!! CTATTGTACAATTTCAAATA+CGG - chr5_1:4342130-4342149 None:intergenic 20.0%
! TTTCTAATTCCTTCTTCTTT+GGG - chr5_1:4337623-4337642 None:intergenic 25.0%
! ATTTCTAATTCCTTCTTCTT+TGG - chr5_1:4337624-4337643 None:intergenic 25.0%
!! TTCAATTCACCAACATTTTT+CGG + chr5_1:4337790-4337809 Msa0712500:CDS 25.0%
! AATGAAATGAAGTTGAAGAT+AGG - chr5_1:4337838-4337857 None:intergenic 25.0%
! CGAAAATGAAAATACATTTG+AGG - chr5_1:4337876-4337895 None:intergenic 25.0%
!! ATGTATTTTCATTTTCGCAT+AGG + chr5_1:4337879-4337898 Msa0712500:intron 25.0%
!! TGTATTTTCATTTTCGCATA+GGG + chr5_1:4337880-4337899 Msa0712500:intron 25.0%
!!! TCATTTATTTAGGTCTTGTT+TGG + chr5_1:4338250-4338269 Msa0712500:intron 25.0%
! AACCAAATGCAAAACAATAA+TGG + chr5_1:4338706-4338725 Msa0712500:intron 25.0%
!!! TTCCATTATTGTTTTGCATT+TGG - chr5_1:4338711-4338730 None:intergenic 25.0%
! TTGATGAGATAAAAATGAAG+GGG + chr5_1:4338792-4338811 Msa0712500:intron 25.0%
! AAACAAAGAACAAAACACAA+GGG - chr5_1:4338957-4338976 None:intergenic 25.0%
! AAAACAAAGAACAAAACACA+AGG - chr5_1:4338958-4338977 None:intergenic 25.0%
!!! TGTTTTGTTCTTTGTTTTGA+AGG + chr5_1:4338960-4338979 Msa0712500:intron 25.0%
! AGCAATATAATGAACACTAT+TGG + chr5_1:4339581-4339600 Msa0712500:intron 25.0%
! TGATAAAACTGTTATATGGT+TGG - chr5_1:4339655-4339674 None:intergenic 25.0%
!! TTTCTAGAAAACATGGAATT+TGG - chr5_1:4339773-4339792 None:intergenic 25.0%
! CTGATCTGAATAATATTCTT+AGG + chr5_1:4339880-4339899 Msa0712500:intron 25.0%
! AGTAATGAGATTTGAACATA+TGG - chr5_1:4340113-4340132 None:intergenic 25.0%
!!! AAATCATTTTTCTCCACAAT+TGG + chr5_1:4340552-4340571 Msa0712500:CDS 25.0%
!!! CATGTAATAGTTTGTTTGAT+AGG - chr5_1:4340687-4340706 None:intergenic 25.0%
! ATCAAACAAACTATTACATG+AGG + chr5_1:4340687-4340706 Msa0712500:intron 25.0%
! TCAAACAAACTATTACATGA+GGG + chr5_1:4340688-4340707 Msa0712500:intron 25.0%
! GTGACTTGAATCAATTAATT+TGG + chr5_1:4340739-4340758 Msa0712500:intron 25.0%
! ATTGACACATCTTCTAAATA+TGG + chr5_1:4340987-4341006 Msa0712500:intron 25.0%
! TTGACACATCTTCTAAATAT+GGG + chr5_1:4340988-4341007 Msa0712500:intron 25.0%
!! CAAATTTGGATTTTCCAAAA+TGG + chr5_1:4341098-4341117 Msa0712500:intron 25.0%
!!! TTTGTTTTTTGATCTTGTTG+GGG - chr5_1:4341245-4341264 None:intergenic 25.0%
! GATGAAAATAAATCTACATG+AGG + chr5_1:4341270-4341289 Msa0712500:intron 25.0%
!!! TTTTTGAAATGGAAAAAACC+AGG - chr5_1:4341534-4341553 None:intergenic 25.0%
!!! GGTTTTTTCCATTTCAAAAA+TGG + chr5_1:4341534-4341553 Msa0712500:intron 25.0%
! TTTATGAGGATTACAATGAA+AGG - chr5_1:4342225-4342244 None:intergenic 25.0%
!! TCTCTGTTTTTCCAATTTCT+TGG - chr5_1:4337540-4337559 None:intergenic 30.0%
TTCTAATTCCTTCTTCTTTG+GGG - chr5_1:4337622-4337641 None:intergenic 30.0%
! TCAATTCACCAACATTTTTC+GGG + chr5_1:4337791-4337810 Msa0712500:CDS 30.0%
ATTCCTATATTTGGAGATGT+TGG + chr5_1:4338105-4338124 Msa0712500:CDS 30.0%
TTACTTGCGGTCATTTATTT+AGG + chr5_1:4338240-4338259 Msa0712500:intron 30.0%
ATGCTATAAGGGCTTAATTA+AGG - chr5_1:4338283-4338302 None:intergenic 30.0%
CATCCAACATTATGCTATAA+GGG - chr5_1:4338294-4338313 None:intergenic 30.0%
ACATCCAACATTATGCTATA+AGG - chr5_1:4338295-4338314 None:intergenic 30.0%
!! ATTGTTTTATGCTCTATCAC+AGG + chr5_1:4338573-4338592 Msa0712500:intron 30.0%
! CTGATATTTTTCTCTGAACT+GGG + chr5_1:4338604-4338623 Msa0712500:CDS 30.0%
TCAGATGTATTCGAAGAATT+TGG + chr5_1:4338766-4338785 Msa0712500:intron 30.0%
TGATGAGATAAAAATGAAGG+GGG + chr5_1:4338793-4338812 Msa0712500:intron 30.0%
TTGCATCAACTTATCAACAA+TGG - chr5_1:4339004-4339023 None:intergenic 30.0%
TTGAAGTCTAGTGATATTGT+TGG - chr5_1:4339108-4339127 None:intergenic 30.0%
ACAATATCACTAGACTTCAA+TGG + chr5_1:4339108-4339127 Msa0712500:intron 30.0%
!!! TTAATTTGCTTGTTTTTGGC+AGG + chr5_1:4339303-4339322 Msa0712500:intron 30.0%
!!! TAATTTGCTTGTTTTTGGCA+GGG + chr5_1:4339304-4339323 Msa0712500:intron 30.0%
AGATAAAGGAAAAACCTGAA+CGG - chr5_1:4339389-4339408 None:intergenic 30.0%
TTCTTTCGAACTCATCTAAT+AGG + chr5_1:4339932-4339951 Msa0712500:intron 30.0%
!! TCTAATAGGTTAATTTGCAC+AGG + chr5_1:4339946-4339965 Msa0712500:intron 30.0%
GGACTAAGATAGTTTATGTA+AGG + chr5_1:4340087-4340106 Msa0712500:intron 30.0%
! AATTGCATTTGTGTTTGCTA+TGG + chr5_1:4340149-4340168 Msa0712500:intron 30.0%
!!! CTGTTTTAAAATTGAACACG+TGG + chr5_1:4340197-4340216 Msa0712500:intron 30.0%
! TTAAGATTTCAATCGACTTC+AGG + chr5_1:4340220-4340239 Msa0712500:intron 30.0%
! TCTGTTCATCATCTGATTTT+TGG - chr5_1:4340292-4340311 None:intergenic 30.0%
AAAATCAGATGATGAACAGA+AGG + chr5_1:4340292-4340311 Msa0712500:CDS 30.0%
AGGAGGTAATATTTGGTATT+TGG + chr5_1:4340312-4340331 Msa0712500:intron 30.0%
! TTAGCAGTTTCTGATTTTTC+TGG + chr5_1:4340450-4340469 Msa0712500:CDS 30.0%
!! TTTGGAGCAAGATGTTTTTA+TGG - chr5_1:4340661-4340680 None:intergenic 30.0%
!! AGTTTGTTTGATAGGGATTT+TGG - chr5_1:4340679-4340698 None:intergenic 30.0%
TGACACATCTTCTAAATATG+GGG + chr5_1:4340989-4341008 Msa0712500:intron 30.0%
AGTAGTATTTCATTACGCTT+CGG + chr5_1:4341063-4341082 Msa0712500:intron 30.0%
! GATTTTTGTTGCACTTTAGT+TGG - chr5_1:4341124-4341143 None:intergenic 30.0%
TAGAATGTTTATAAAGCACG+TGG - chr5_1:4341149-4341168 None:intergenic 30.0%
!!! TTGTTTTTTGATCTTGTTGG+GGG - chr5_1:4341244-4341263 None:intergenic 30.0%
GAGGAAAACCTTAACTATTA+TGG + chr5_1:4341289-4341308 Msa0712500:intron 30.0%
GCTATCTGCATATAAAAGAA+AGG - chr5_1:4341407-4341426 None:intergenic 30.0%
! TTTACTAGGGACATTTTTGT+CGG + chr5_1:4341442-4341461 Msa0712500:CDS 30.0%
!! ATTCTGGTCCATTTTTGAAA+TGG - chr5_1:4341545-4341564 None:intergenic 30.0%
AATACCCAATTTACGAATTC+TGG - chr5_1:4341561-4341580 None:intergenic 30.0%
! GTAAAGGAAAGTGAGATTTT+AGG + chr5_1:4341624-4341643 Msa0712500:intron 30.0%
TACCTATAGAATATAGGTCA+TGG + chr5_1:4341701-4341720 Msa0712500:intron 30.0%
TTCCATGACCTATATTCTAT+AGG - chr5_1:4341706-4341725 None:intergenic 30.0%
! TTTGGAATATTACCTCATAC+AGG + chr5_1:4342010-4342029 Msa0712500:intron 30.0%
GCAATATAAGCTATGTACAA+AGG + chr5_1:4342164-4342183 Msa0712500:three_prime_UTR 30.0%
! CTTAATGGACATAGTTTATG+AGG - chr5_1:4342239-4342258 None:intergenic 30.0%
TTAGCTAGATGATTGATCAA+CGG + chr5_1:4342317-4342336 Msa0712500:three_prime_UTR 30.0%
TCTAATTCCTTCTTCTTTGG+GGG - chr5_1:4337621-4337640 None:intergenic 35.0%
AATGGAAGAGGATATAAGTG+AGG - chr5_1:4337724-4337743 None:intergenic 35.0%
! GCATTGAGAATCGGTATTTT+CGG - chr5_1:4337938-4337957 None:intergenic 35.0%
! TCTTCTGATGATAGTGATGA+TGG + chr5_1:4337979-4337998 Msa0712500:CDS 35.0%
TCACCAACATCTCCAAATAT+AGG - chr5_1:4338111-4338130 None:intergenic 35.0%
! AATGTCAACTCTGTTACTTG+CGG + chr5_1:4338227-4338246 Msa0712500:intron 35.0%
AAGCCCTTATAGCATAATGT+TGG + chr5_1:4338288-4338307 Msa0712500:intron 35.0%
AAGCTATCCTGAAGAGTTTA+CGG + chr5_1:4338375-4338394 Msa0712500:intron 35.0%
CTTATTTCCGTAAACTCTTC+AGG - chr5_1:4338385-4338404 None:intergenic 35.0%
!!! AGACTGTTTTGGAGAACTTA+TGG - chr5_1:4338443-4338462 None:intergenic 35.0%
! GCTGATATTTTTCTCTGAAC+TGG + chr5_1:4338603-4338622 Msa0712500:CDS 35.0%
TGAGTGTTTGATGTTTATGC+AGG + chr5_1:4338839-4338858 Msa0712500:intron 35.0%
!! GTTGTTTTCATTGGGACATT+TGG + chr5_1:4338891-4338910 Msa0712500:CDS 35.0%
GCATTTGTACAAAACTCTTC+AGG + chr5_1:4339169-4339188 Msa0712500:intron 35.0%
ACCAGAGATAAACATCACAA+GGG - chr5_1:4339531-4339550 None:intergenic 35.0%
TACCAGAGATAAACATCACA+AGG - chr5_1:4339532-4339551 None:intergenic 35.0%
TGTTTATCTCTGGTATGCAT+TGG + chr5_1:4339537-4339556 Msa0712500:intron 35.0%
GGACATATCAAAAGTGAACA+TGG + chr5_1:4339558-4339577 Msa0712500:intron 35.0%
! CTGTTATATGGTTGGTCAAA+AGG - chr5_1:4339647-4339666 None:intergenic 35.0%
TTTACTTCTACTCCTTCCTT+TGG + chr5_1:4339803-4339822 Msa0712500:intron 35.0%
TCAGATCAGATAGTCAGATT+AGG - chr5_1:4339869-4339888 None:intergenic 35.0%
!! TAGGTTAATTTGCACAGGTT+TGG + chr5_1:4339951-4339970 Msa0712500:intron 35.0%
ACAGCAGCAATATCATCAAT+AGG - chr5_1:4339990-4340009 None:intergenic 35.0%
ATGGAGGTGAATTTACCAAT+AGG - chr5_1:4340016-4340035 None:intergenic 35.0%
TATGTAAACGCGGTAGTATT+AGG + chr5_1:4340039-4340058 Msa0712500:intron 35.0%
!!! TTTTTGGCTATCACTAGATG+AGG - chr5_1:4340276-4340295 None:intergenic 35.0%
GAACAGAAGGAGGTAATATT+TGG + chr5_1:4340305-4340324 Msa0712500:intron 35.0%
! TGACGATGTTTTCTATGCAA+TGG + chr5_1:4340405-4340424 Msa0712500:intron 35.0%
!! GTTTCTGATTTTTCTGGAGA+CGG + chr5_1:4340456-4340475 Msa0712500:CDS 35.0%
!! TCTTAGTTTTTGTTGCTGAG+TGG + chr5_1:4340523-4340542 Msa0712500:CDS 35.0%
!! CTTAGTTTTTGTTGCTGAGT+GGG + chr5_1:4340524-4340543 Msa0712500:CDS 35.0%
!! TTAGTTTTTGTTGCTGAGTG+GGG + chr5_1:4340525-4340544 Msa0712500:CDS 35.0%
GTAGTATTTCATTACGCTTC+GGG + chr5_1:4341064-4341083 Msa0712500:intron 35.0%
GGGAACAACAAGTACAAATT+TGG + chr5_1:4341084-4341103 Msa0712500:intron 35.0%
TGAAACTGCTTAAAGAGTTC+CGG + chr5_1:4341183-4341202 Msa0712500:intron 35.0%
GTACCAAATCTAGGTCATTA+GGG - chr5_1:4341222-4341241 None:intergenic 35.0%
AAACCACAGTATATCAGGAA+CGG - chr5_1:4341497-4341516 None:intergenic 35.0%
CTAACAAACCACAGTATATC+AGG - chr5_1:4341502-4341521 None:intergenic 35.0%
! GTTTGTTAGTTTCAACTTCC+TGG + chr5_1:4341513-4341532 Msa0712500:intron 35.0%
ATGGACCAGAATTCGTAAAT+TGG + chr5_1:4341553-4341572 Msa0712500:intron 35.0%
TGGACCAGAATTCGTAAATT+GGG + chr5_1:4341554-4341573 Msa0712500:intron 35.0%
! AGGTGCTACCTATAGAATAT+AGG + chr5_1:4341695-4341714 Msa0712500:intron 35.0%
! TCTGTGGATAATTTTCTGCA+CGG + chr5_1:4341730-4341749 Msa0712500:intron 35.0%
CCAAACAGATACACAAATGT+AGG - chr5_1:4341995-4342014 None:intergenic 35.0%
CCTACATTTGTGTATCTGTT+TGG + chr5_1:4341992-4342011 Msa0712500:intron 35.0%
TTGAAGGTTATTGCCTACAT+TGG + chr5_1:4342072-4342091 Msa0712500:intron 35.0%
AGAGATAACAAAGCAAGGTG+AGG + chr5_1:4337486-4337505 Msa0712500:five_prime_UTR 40.0%
! TGGTGGCTCTTAAATGGTTT+TGG - chr5_1:4337684-4337703 None:intergenic 40.0%
GAAAAGTGGTGGCTCTTAAA+TGG - chr5_1:4337690-4337709 None:intergenic 40.0%
TGGTGAAAGATGAAAAGTGG+TGG - chr5_1:4337701-4337720 None:intergenic 40.0%
AGGTGGTGAAAGATGAAAAG+TGG - chr5_1:4337704-4337723 None:intergenic 40.0%
! AATTTGAGATTGCAGAGAGG+AGG - chr5_1:4337759-4337778 None:intergenic 40.0%
! GGTAATTTGAGATTGCAGAG+AGG - chr5_1:4337762-4337781 None:intergenic 40.0%
! ATGTTGGTGAATTGAAAGCG+TGG - chr5_1:4337786-4337805 None:intergenic 40.0%
!!! CAACATTTTTCGGGCTACAA+CGG + chr5_1:4337800-4337819 Msa0712500:CDS 40.0%
ATGAAGTTGAAGATAGGTGC+AGG - chr5_1:4337832-4337851 None:intergenic 40.0%
!! TACCGATTCTCAATGCCAAT+TGG + chr5_1:4337942-4337961 Msa0712500:CDS 40.0%
! TGCCAATTGGCATTGAGAAT+CGG - chr5_1:4337947-4337966 None:intergenic 40.0%
ACACATTCTGTGTTGCCAAT+TGG - chr5_1:4337960-4337979 None:intergenic 40.0%
CGCACTTCAACATACTTATC+CGG + chr5_1:4338044-4338063 Msa0712500:CDS 40.0%
! CAACACTAGTGAGACTGTTT+TGG - chr5_1:4338454-4338473 None:intergenic 40.0%
ATGCAACAGTTTCGACATCA+AGG - chr5_1:4338497-4338516 None:intergenic 40.0%
TCGAATACATCTGAACAGAG+AGG - chr5_1:4338760-4338779 None:intergenic 40.0%
TTAGCAGCTAGAAATTCAGC+TGG + chr5_1:4338867-4338886 Msa0712500:CDS 40.0%
!!! TCAGCTGGTGTTGTTTTCAT+TGG + chr5_1:4338882-4338901 Msa0712500:CDS 40.0%
!!! CAGCTGGTGTTGTTTTCATT+GGG + chr5_1:4338883-4338902 Msa0712500:CDS 40.0%
TGATGCAATGCAAGCAATTG+TGG + chr5_1:4339016-4339035 Msa0712500:intron 40.0%
CAGGCTTATATTGTGTCTAG+AGG + chr5_1:4339188-4339207 Msa0712500:intron 40.0%
ACCCTTGTGATGTTTATCTC+TGG + chr5_1:4339527-4339546 Msa0712500:intron 40.0%
! TATTGCTGCTGTTTGCCTAT+TGG + chr5_1:4339998-4340017 Msa0712500:CDS 40.0%
CCTCCATGTTTATGTAAACG+CGG + chr5_1:4340029-4340048 Msa0712500:intron 40.0%
CTACCGCGTTTACATAAACA+TGG - chr5_1:4340035-4340054 None:intergenic 40.0%
! AATCGACTTCAGGTGTACTT+CGG + chr5_1:4340230-4340249 Msa0712500:intron 40.0%
ATCAGATGATGAACAGAAGG+AGG + chr5_1:4340295-4340314 Msa0712500:CDS 40.0%
CAATGGTTCCTACATTAACC+AGG + chr5_1:4340422-4340441 Msa0712500:intron 40.0%
TAACTCTGCCTGGTTAATGT+AGG - chr5_1:4340433-4340452 None:intergenic 40.0%
!! AAAAGTGCTGACAATTGTGC+TGG - chr5_1:4340502-4340521 None:intergenic 40.0%
! TGCACTTTAGTTGGCCATTT+TGG - chr5_1:4341115-4341134 None:intergenic 40.0%
CTTCCCTAATGACCTAGATT+TGG + chr5_1:4341216-4341235 Msa0712500:intron 40.0%
GGTACCAAATCTAGGTCATT+AGG - chr5_1:4341223-4341242 None:intergenic 40.0%
TATATGCAGATAGCCGTACT+TGG + chr5_1:4341413-4341432 Msa0712500:intron 40.0%
TAGTAAAGAGCCACCAAGTA+CGG - chr5_1:4341429-4341448 None:intergenic 40.0%
! TACTTGGTGGCTCTTTACTA+GGG + chr5_1:4341429-4341448 Msa0712500:CDS 40.0%
TAGGTCATGGAAATCTTCTG+TGG + chr5_1:4341714-4341733 Msa0712500:intron 40.0%
! CTGTGGATAATTTTCTGCAC+GGG + chr5_1:4341731-4341750 Msa0712500:intron 40.0%
TGTTCTTTCGCAGAAAACTC+CGG - chr5_1:4341811-4341830 None:intergenic 40.0%
ATGATGTGAAATCTCCCTGT+TGG + chr5_1:4341856-4341875 Msa0712500:intron 40.0%
CTTAATAACCCCAACCAACA+GGG - chr5_1:4341873-4341892 None:intergenic 40.0%
TCTTAATAACCCCAACCAAC+AGG - chr5_1:4341874-4341893 None:intergenic 40.0%
! AGTACCTTGCATTTGAAGCA+TGG + chr5_1:4341968-4341987 Msa0712500:intron 40.0%
AAGGTTATTGCCTACATTGG+AGG + chr5_1:4342075-4342094 Msa0712500:intron 40.0%
ATTGATCAACGGCTAACACT+TGG + chr5_1:4342328-4342347 Msa0712500:three_prime_UTR 40.0%
GATAACAAAGCAAGGTGAGG+TGG + chr5_1:4337489-4337508 Msa0712500:five_prime_UTR 45.0%
GCGGGACTTATCCAAGAAAT+TGG + chr5_1:4337526-4337545 Msa0712500:five_prime_UTR 45.0%
GGAAGAGGATATAAGTGAGG+TGG - chr5_1:4337721-4337740 None:intergenic 45.0%
AGGAGGAGGAAAAATGGAAG+AGG - chr5_1:4337736-4337755 None:intergenic 45.0%
! TTGGTGAATTGAAAGCGTGG+TGG - chr5_1:4337783-4337802 None:intergenic 45.0%
CGTTGTAGCCCGAAAAATGT+TGG - chr5_1:4337802-4337821 None:intergenic 45.0%
TTCGGCAACAGAGTCATGAT+CGG - chr5_1:4337920-4337939 None:intergenic 45.0%
ATGTTGAAGTGCGAAGAACG+CGG - chr5_1:4338037-4338056 None:intergenic 45.0%
AAATCAGAAGCAGCAACTGC+CGG - chr5_1:4338066-4338085 None:intergenic 45.0%
! GCTGCTTCTGATTTTGCTAC+TGG + chr5_1:4338072-4338091 Msa0712500:CDS 45.0%
!! GATGTTGGTGACTTAAGCAC+AGG + chr5_1:4338120-4338139 Msa0712500:CDS 45.0%
! GCACAGGTTTTGCTTCAGTT+AGG + chr5_1:4338136-4338155 Msa0712500:intron 45.0%
AAAAATGAAGGGGGAAGCTC+TGG + chr5_1:4338802-4338821 Msa0712500:intron 45.0%
ACTGTCATATCTGTCGCTCT+AGG + chr5_1:4339332-4339351 Msa0712500:CDS 45.0%
TAACATGAAAAGGGCCCAAC+CGG + chr5_1:4339449-4339468 Msa0712500:intron 45.0%
GCATTTGACTGCAGATCAAG+AGG - chr5_1:4339489-4339508 None:intergenic 45.0%
AATGCTCTACCACTGAGCTA+TGG + chr5_1:4339504-4339523 Msa0712500:intron 45.0%
CCGCGTTTACATAAACATGG+AGG - chr5_1:4340032-4340051 None:intergenic 45.0%
TAGGATTGAGCTAGTGGTGA+AGG + chr5_1:4340066-4340085 Msa0712500:intron 45.0%
! ATCGACTTCAGGTGTACTTC+GGG + chr5_1:4340231-4340250 Msa0712500:intron 45.0%
!! ATTTTTCTGGAGACGGTGCT+GGG + chr5_1:4340463-4340482 Msa0712500:CDS 45.0%
ACTTCAGCACTCACCAATTG+TGG - chr5_1:4340568-4340587 None:intergenic 45.0%
TGCAAGGGCTAAATAGTAGG+AGG - chr5_1:4340886-4340905 None:intergenic 45.0%
TGCTGCAAGGGCTAAATAGT+AGG - chr5_1:4340889-4340908 None:intergenic 45.0%
!! TGGTCATGGTGTTGCAACTT+TGG + chr5_1:4340947-4340966 Msa0712500:CDS 45.0%
TTAGGGAAGAGATAGCTCAC+CGG - chr5_1:4341205-4341224 None:intergenic 45.0%
!! TTGTTGGGGGTACCAAATCT+AGG - chr5_1:4341231-4341250 None:intergenic 45.0%
! GTACTTGGTGGCTCTTTACT+AGG + chr5_1:4341428-4341447 Msa0712500:CDS 45.0%
! AGGGACATTTTTGTCGGAGA+AGG + chr5_1:4341448-4341467 Msa0712500:CDS 45.0%
TCGGAGAAGGTAACTTCTTC+TGG + chr5_1:4341461-4341480 Msa0712500:intron 45.0%
CATCCGTTCCTGATATACTG+TGG + chr5_1:4341491-4341510 Msa0712500:intron 45.0%
TGTGAAATCTCCCTGTTGGT+TGG + chr5_1:4341860-4341879 Msa0712500:intron 45.0%
! GTGAAATCTCCCTGTTGGTT+GGG + chr5_1:4341861-4341880 Msa0712500:intron 45.0%
! TGAAATCTCCCTGTTGGTTG+GGG + chr5_1:4341862-4341881 Msa0712500:intron 45.0%
AGGTCCATGCTTCAAATGCA+AGG - chr5_1:4341975-4341994 None:intergenic 45.0%
! AAAGAGCACACCTCCAATGT+AGG - chr5_1:4342088-4342107 None:intergenic 45.0%
ACAAAGCAAGGTGAGGTGGT+TGG + chr5_1:4337493-4337512 Msa0712500:five_prime_UTR 50.0%
! GGTGGTTGGTTAATGTGACG+CGG + chr5_1:4337507-4337526 Msa0712500:five_prime_UTR 50.0%
! GTGGTTGGTTAATGTGACGC+GGG + chr5_1:4337508-4337527 Msa0712500:five_prime_UTR 50.0%
ATCCTCTCCCCCAAAGAAGA+AGG + chr5_1:4337611-4337630 Msa0712500:five_prime_UTR 50.0%
! TTCCTTCTTCTTTGGGGGAG+AGG - chr5_1:4337616-4337635 None:intergenic 50.0%
AGGAGGAGGAGGAGGAAAAA+TGG - chr5_1:4337742-4337761 None:intergenic 50.0%
TTGAGATTGCAGAGAGGAGG+AGG - chr5_1:4337756-4337775 None:intergenic 50.0%
TTGACGAACTCTTGCCGTTC+AGG + chr5_1:4339372-4339391 Msa0712500:CDS 50.0%
AACATGAAAAGGGCCCAACC+GGG + chr5_1:4339450-4339469 Msa0712500:intron 50.0%
ACTGCAGATCAAGAGGTCAC+CGG - chr5_1:4339482-4339501 None:intergenic 50.0%
CGCGGTAGTATTAGGTCACT+AGG + chr5_1:4340047-4340066 Msa0712500:intron 50.0%
GGTCACTAGGATTGAGCTAG+TGG + chr5_1:4340060-4340079 Msa0712500:intron 50.0%
TCGACTTCAGGTGTACTTCG+GGG + chr5_1:4340232-4340251 Msa0712500:intron 50.0%
! ACTAGATGAGGCATCCAGCA+GGG - chr5_1:4340264-4340283 None:intergenic 50.0%
CAGAAACTGCTAACTCTGCC+TGG - chr5_1:4340443-4340462 None:intergenic 50.0%
!! GATTTTTCTGGAGACGGTGC+TGG + chr5_1:4340462-4340481 Msa0712500:CDS 50.0%
GATCCAGCTATGACTCCCAA+GGG - chr5_1:4340921-4340940 None:intergenic 50.0%
TGATCCAGCTATGACTCCCA+AGG - chr5_1:4340922-4340941 None:intergenic 50.0%
ATGCAGATAGCCGTACTTGG+TGG + chr5_1:4341416-4341435 Msa0712500:intron 50.0%
GCGCAACATGTTAGATGCTC+CGG + chr5_1:4341789-4341808 Msa0712500:intron 50.0%
CTGTTGCTGTAGCCTGTATG+AGG - chr5_1:4342025-4342044 None:intergenic 50.0%
AGATTGCAGAGAGGAGGAGG+AGG - chr5_1:4337753-4337772 None:intergenic 55.0%
CACAAGGGTCCATAGCTCAG+TGG - chr5_1:4339516-4339535 None:intergenic 55.0%
! CACTAGATGAGGCATCCAGC+AGG - chr5_1:4340265-4340284 None:intergenic 55.0%
GGGTGAAGAAGCTGCTGCAA+GGG - chr5_1:4340901-4340920 None:intergenic 55.0%
AGGGTGAAGAAGCTGCTGCA+AGG - chr5_1:4340902-4340921 None:intergenic 55.0%
TGCAGCAGCTTCTTCACCCT+TGG + chr5_1:4340902-4340921 Msa0712500:CDS 55.0%
GCAGCAGCTTCTTCACCCTT+GGG + chr5_1:4340903-4340922 Msa0712500:CDS 55.0%
TCACCCTTGGGAGTCATAGC+TGG + chr5_1:4340915-4340934 Msa0712500:CDS 55.0%
GGGAGTCATAGCTGGATCAC+TGG + chr5_1:4340923-4340942 Msa0712500:CDS 55.0%
GTCATAGCTGGATCACTGGC+TGG + chr5_1:4340927-4340946 Msa0712500:CDS 55.0%
TTGCAGAGAGGAGGAGGAGG+AGG - chr5_1:4337750-4337769 None:intergenic 60.0%
!! TCACCGGTTCGAACCCGGTT+GGG - chr5_1:4339466-4339485 None:intergenic 60.0%
!! AGAGGTCACCGGTTCGAACC+CGG - chr5_1:4339471-4339490 None:intergenic 60.0%
! GCTGGATCACTGGCTGGTCA+TGG + chr5_1:4340933-4340952 Msa0712500:CDS 60.0%
!! GTCACCGGTTCGAACCCGGT+TGG - chr5_1:4339467-4339486 None:intergenic 65.0%
CTTCGGGGTCTCTACCCTGC+TGG + chr5_1:4340247-4340266 Msa0712500:CDS 65.0%
GGGCCCAACCGGGTTCGAAC+CGG + chr5_1:4339460-4339479 Msa0712500:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4337483 4342365 4337483 ID=Msa0712500;Name=Msa0712500
chr5_1 mRNA 4337483 4342365 4337483 ID=Msa0712500-mRNA-1;Parent=Msa0712500;Name=Msa0712500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=159|1|1|1|1|1|11|216|354
chr5_1 exon 4337483 4337821 4337483 ID=Msa0712500-mRNA-1:exon:1712;Parent=Msa0712500-mRNA-1
chr5_1 exon 4337901 4338152 4337901 ID=Msa0712500-mRNA-1:exon:1713;Parent=Msa0712500-mRNA-1
chr5_1 exon 4338595 4338648 4338595 ID=Msa0712500-mRNA-1:exon:1714;Parent=Msa0712500-mRNA-1
chr5_1 exon 4338861 4338922 4338861 ID=Msa0712500-mRNA-1:exon:1715;Parent=Msa0712500-mRNA-1
chr5_1 exon 4339325 4339393 4339325 ID=Msa0712500-mRNA-1:exon:1716;Parent=Msa0712500-mRNA-1
chr5_1 exon 4339968 4340019 4339968 ID=Msa0712500-mRNA-1:exon:1717;Parent=Msa0712500-mRNA-1
chr5_1 exon 4340242 4340316 4340242 ID=Msa0712500-mRNA-1:exon:1718;Parent=Msa0712500-mRNA-1
chr5_1 exon 4340444 4340573 4340444 ID=Msa0712500-mRNA-1:exon:1719;Parent=Msa0712500-mRNA-1
chr5_1 exon 4340898 4340968 4340898 ID=Msa0712500-mRNA-1:exon:1720;Parent=Msa0712500-mRNA-1
chr5_1 exon 4341422 4341469 4341422 ID=Msa0712500-mRNA-1:exon:1721;Parent=Msa0712500-mRNA-1
chr5_1 exon 4342078 4342365 4342078 ID=Msa0712500-mRNA-1:exon:1722;Parent=Msa0712500-mRNA-1
chr5_1 five_prime_UTR 4337483 4337641 4337483 ID=Msa0712500-mRNA-1:five_prime_utr;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4337642 4337821 4337642 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4337901 4338152 4337901 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4338595 4338648 4338595 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4338861 4338922 4338861 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4339325 4339393 4339325 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4339968 4340019 4339968 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4340242 4340316 4340242 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4340444 4340573 4340444 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4340898 4340968 4340898 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4341422 4341469 4341422 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 CDS 4342078 4342149 4342078 ID=Msa0712500-mRNA-1:cds;Parent=Msa0712500-mRNA-1
chr5_1 three_prime_UTR 4342150 4342365 4342150 ID=Msa0712500-mRNA-1:three_prime_utr;Parent=Msa0712500-mRNA-1
Gene Sequence

>Msa0712500

ATGCAATCACACTTACGCTCACATTCACTCTCTTCGTTTCCAAAACCATTTAAGAGCCACCACTTTTCATCTTTCACCACCTCACTTATATCCTCTTCCATTTTTCCTCCTCCTCCTCCTCTCTGCAATCTCAAATTACCACCACGCTTTCAATTCACCAACATTTTTCGGGCTACAACGGGATTTGTTCGTGCTTCCGATCATGACTCTGTTGCCGAAAATACCGATTCTCAATGCCAATTGGCAACACAGAATGTGTCTTCTGATGATAGTGATGATGGATCAATAGCACTTGTGAAGTTTATGCTGTTCTCCGCGTTCTTCGCACTTCAACATACTTATCCGGCAGTTGCTGCTTCTGATTTTGCTACTGGTTTGAATTCAATTCCTATATTTGGAGATGTTGGTGACTTAAGCACAGGTTTTGCTTCAGCATTTTTGCTGATATTTTTCTCTGAACTGGGAGACAAGACTTTTTTCATTGCAGCATTGTTAGCAGCTAGAAATTCAGCTGGTGTTGTTTTCATTGGGACATTTGGCGCACTTGCGGCAATGACTGTCATATCTGTCGCTCTAGGTCGAACTTTTCATTATGTTGACGAACTCTTGCCGTTCAGGTTTGGAGAAACTGATCTACCTATTGATGATATTGCTGCTGTTTGCCTATTGGTGTACTTCGGGGTCTCTACCCTGCTGGATGCCTCATCTAGTGATAGCCAAAAATCAGATGATGAACAGAAGGAGGCAGAGTTAGCAGTTTCTGATTTTTCTGGAGACGGTGCTGGGATACTAGCTGCTGCCAGCACAATTGTCAGCACTTTTCTCTTAGTTTTTGTTGCTGAGTGGGGTGATAAATCATTTTTCTCCACAATTGCCCTTGCAGCAGCTTCTTCACCCTTGGGAGTCATAGCTGGATCACTGGCTGGTCATGGTGTTGCAACTTTGATAGCCGTACTTGGTGGCTCTTTACTAGGGACATTTTTGTCGGAGAAGGTTATTGCCTACATTGGAGGTGTGCTCTTTCTCGTCTTTGCTGCAGTAACCGTATTTGAAATTGTACAATAG

Protein sequence

>Msa0712500

MQSHLRSHSLSSFPKPFKSHHFSSFTTSLISSSIFPPPPPLCNLKLPPRFQFTNIFRATTGFVRASDHDSVAENTDSQCQLATQNVSSDDSDDGSIALVKFMLFSAFFALQHTYPAVAASDFATGLNSIPIFGDVGDLSTGFASAFLLIFFSELGDKTFFIAALLAARNSAGVVFIGTFGALAAMTVISVALGRTFHYVDELLPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDSQKSDDEQKEAELAVSDFSGDGAGILAAASTIVSTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGSLAGHGVATLIAVLGGSLLGTFLSEKVIAYIGGVLFLVFAAVTVFEIVQ*