AlfalfaGEDB | Msa0972820

M. sativa cultivar zhongmu-4 / Msa0972820

KEGG: K00430
GO: GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009505 GO:0030312 GO:0044424 GO:0044444 GO:0044464 GO:0071944
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972820	XP_013450882.1	96.396	333	12	0	3	335	2	334	0.0	665

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972820	sp\|Q9FL16\|PER63_ARATH	64.590	305	104	2	31	335	28	328	6.57e-151	430

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972820	I3T3G6	96.396	333	12	0	3	335	2	334	0.0	665

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0274950	Msa0972820	0.839037	2.012802e-57	-8.615850e-47
Msa0390090	Msa0972820	0.862438	5.066548e-64	-8.615850e-47
Msa0667070	Msa0972820	0.811847	5.703887e-51	-8.615850e-47
Msa0870090	Msa0972820	0.901233	3.294514e-78	-8.615850e-47
Msa0935790	Msa0972820	0.894976	1.484283e-75	-8.615850e-47
Msa0972820	Msa1204770	0.813025	3.154127e-51	-8.615850e-47
Msa0972820	Msa1320530	0.807102	5.956303e-50	-8.615850e-47
Msa0972820	Msa1329350	0.818055	2.393084e-52	-8.615850e-47
Msa0972820	Msa1329580	0.806224	9.127152e-50	-8.615850e-47
Msa0972820	Msa1341500	0.827443	1.560077e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972820	MtrunA17_Chr6g0451571	96.396	333	12	0	3	335	2	334	0.0	665
Msa0972820	MtrunA17_Chr8g0364291	52.597	308	143	2	30	335	18	324	9.04e-122	353
Msa0972820	MtrunA17_Chr1g0197411	50.156	321	156	3	18	335	11	330	7.28e-118	343
Msa0972820	MtrunA17_Chr7g0225221	45.066	304	162	4	32	335	22	320	6.06e-91	274
Msa0972820	MtrunA17_Chr1g0148021	43.252	326	176	6	14	335	8	328	2.31e-88	268
Msa0972820	MtrunA17_Chr5g0401431	42.368	321	179	4	15	331	7	325	3.03e-85	260
Msa0972820	MtrunA17_Chr4g0046131	41.908	346	173	11	9	331	2	342	7.17e-82	252
Msa0972820	MtrunA17_Chr1g0204011	44.548	321	164	8	18	335	13	322	7.41e-80	246
Msa0972820	MtrunA17_Chr4g0072091	43.464	306	164	6	34	335	23	323	1.39e-77	240
Msa0972820	MtrunA17_Chr4g0053871	42.525	301	166	4	33	331	25	320	5.22e-77	239

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972820	AT5G40150.1	64.590	305	104	2	31	335	28	328	6.68e-152	430
Msa0972820	AT3G28200.1	64.918	305	102	2	31	335	17	316	1.73e-150	426
Msa0972820	AT5G47000.1	55.814	301	130	2	35	335	33	330	4.86e-124	359
Msa0972820	AT1G24110.1	54.072	307	139	2	30	335	17	322	1.46e-122	355
Msa0972820	AT4G17690.1	55.150	301	131	2	35	335	26	322	5.98e-120	348
Msa0972820	AT4G37530.1	45.192	312	165	4	28	335	20	329	6.61e-91	275
Msa0972820	AT5G14130.1	42.857	322	176	5	18	335	13	330	1.76e-87	266
Msa0972820	AT5G14130.2	42.857	322	176	5	18	335	54	371	3.02e-87	267
Msa0972820	AT4G37520.1	43.974	307	166	4	33	335	25	329	7.32e-87	265
Msa0972820	AT5G67400.1	43.689	309	168	4	31	335	23	329	3.49e-86	263

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Find 67 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTTCAGACTGGTAGGAA+GGG	0.612530	6_4:+5109598	Msa0972820:CDS
AATTCTTCTGGTTCTGGTTC+AGG	0.343705	6_4:+5109307	Msa0972820:CDS
ACGGAGAGTGGCGGCGGCGG+TGG	0.370801	6_4:-5108837	None:intergenic
ACGGAGGCGTCGCAGCCGTT+AGG	0.473671	6_4:-5108884	None:intergenic
ACGTTCAGCTTTGTTGAAAG+GGG	0.574965	6_4:-5108921	None:intergenic
AGAATTTACCTAAAGGTTTA+GGG	0.281875	6_4:+5109449	Msa0972820:CDS
AGAGTGGCGGCGGCGGTGGT+TGG	0.426793	6_4:-5108833	None:intergenic
AGGACAGGAGAGTTCTAAGG+CGG	0.642727	6_4:-5109005	None:intergenic
AGGAGTCTCCTGGAAGAGAG+AGG	0.623254	6_4:-5108958	None:intergenic
AGGCGTCGCAGCCGTTAGGG+AGG	0.621783	6_4:-5108880	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTTTCAATATTCGCGAAA+CGG	+	chr6_4:5109194-5109213	Msa0972820:CDS	30.0%
TTTAACCCTTCAACAAATCT+TGG	-	chr6_4:5109340-5109359	None:intergenic	30.0%
CAGAATTTACCTAAAGGTTT+AGG	+	chr6_4:5109448-5109467	Msa0972820:CDS	30.0%
GAATTTACCTAAAGGTTTAG+GGG	+	chr6_4:5109450-5109469	Msa0972820:CDS	30.0%
TTAGCAAATCTATCCACAAA+AGG	-	chr6_4:5109520-5109539	None:intergenic	30.0%
TAGTTTCAATATTCGCGAAA+CGG	+	chr6_4:5109194-5109213	Msa0972820:CDS	30.0%
TTTAACCCTTCAACAAATCT+TGG	-	chr6_4:5109340-5109359	None:intergenic	30.0%
CAGAATTTACCTAAAGGTTT+AGG	+	chr6_4:5109448-5109467	Msa0972820:CDS	30.0%
GAATTTACCTAAAGGTTTAG+GGG	+	chr6_4:5109450-5109469	Msa0972820:CDS	30.0%
TTAGCAAATCTATCCACAAA+AGG	-	chr6_4:5109520-5109539	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	5108647	5109654	5108647	ID=Msa0972820;Name=Msa0972820
chr6_4	mRNA	5108647	5109654	5108647	ID=Msa0972820-mRNA-1;Parent=Msa0972820;Name=Msa0972820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|335
chr6_4	exon	5108647	5109654	5108647	ID=Msa0972820-mRNA-1:exon:2206;Parent=Msa0972820-mRNA-1
chr6_4	CDS	5108647	5109654	5108647	ID=Msa0972820-mRNA-1:cds;Parent=Msa0972820-mRNA-1

Gene Sequence

>Msa0972820

ATGGCAGCAACAACAAAAACAACCTCAACAACATCAAAAACATTGTTGTCATTGTTTTTCTTCTTCAACATCATCATTAACCTTAACCTCTCCGAATCAAAACTAACCTTAGATTACTACAAACAAACATGTCCACAATTCGAACAAATCATTCAACAAACAGTAACCTCAAAACAGATCCAATCTCCAACCACCGCCGCCGCCACTCTCCGTCTCTTCCTCCACGACTGCCTCCTCCCTAACGGCTGCGACGCCTCCGTCCTCCTCTCTTCAACCCCTTTCAACAAAGCTGAACGTGACAACGACATCAACCTCTCTCTTCCAGGAGACTCCTTTGACCTCATCGTACGTATCAAAACCGCCTTAGAACTCTCCTGTCCTAACACTGTCTCTTGCTCTGACATCCTTGCTACAGCTACACGTGATCTTCTTATCATGCTTGGTGGTCCTCATTACAATGTTTACCTAGGCCGTCGCGACGGCCGAGGTTCTGTGTCATCTGCCGTTGACGGCTTTCTTCCAAAGCCGTCGATGACAATGACACAGATAGTTTCAATATTCGCGAAACGGGGTTTTACGGTTGAAGAAATGGTTGCTTTATCTGGTGCTCATACAGTTGGACTTTCACATTGTAGTGAAATTAGTTCAGATATTTACAACAATTCTTCTGGTTCTGGTTCAGGTTATAATCCAAGATTTGTTGAAGGGTTAAAGAAAGCTTGTGGTGATTATAAGAAGAATCCAACTTTGTCTGTTTTTAATGATATTATGACACCAAATAAGTTTGATAATGTTTATTTTCAGAATTTACCTAAAGGTTTAGGGGTTTTGAAATCTGATCATGGATTGTTTAGTGACCCTTCAACTAAACCTTTTGTGGATAGATTTGCTAAGGATCAAGATTATTTCTTTAAGGTTTTTGCTAGTTCAATGCAAAAGCTTAGTCTTTTGAATGTTCAGACTGGTAGGAAGGGTGAGATTAGAAGAAGATGTGATCAGGTTAATTGA

Protein sequence

>Msa0972820

MAATTKTTSTTSKTLLSLFFFFNIIINLNLSESKLTLDYYKQTCPQFEQIIQQTVTSKQIQSPTTAAATLRLFLHDCLLPNGCDASVLLSSTPFNKAERDNDINLSLPGDSFDLIVRIKTALELSCPNTVSCSDILATATRDLLIMLGGPHYNVYLGRRDGRGSVSSAVDGFLPKPSMTMTQIVSIFAKRGFTVEEMVALSGAHTVGLSHCSEISSDIYNNSSGSGSGYNPRFVEGLKKACGDYKKNPTLSVFNDIMTPNKFDNVYFQNLPKGLGVLKSDHGLFSDPSTKPFVDRFAKDQDYFFKVFASSMQKLSLLNVQTGRKGEIRRRCDQVN*