AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0870090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870090 MtrunA17_Chr6g0451571 94.880 332 17 0 2 333 3 334 0.0 653
Msa0870090 MtrunA17_Chr8g0364291 52.273 308 144 2 28 333 18 324 5.61e-121 351
Msa0870090 MtrunA17_Chr1g0197411 50.467 321 155 3 16 333 11 330 3.22e-118 344
Msa0870090 MtrunA17_Chr7g0225221 45.066 304 162 4 30 333 22 320 8.45e-91 274
Msa0870090 MtrunA17_Chr1g0148021 42.945 326 172 6 19 333 6 328 1.02e-87 266
Msa0870090 MtrunA17_Chr5g0401431 42.368 321 179 4 13 329 7 325 5.31e-85 259
Msa0870090 MtrunA17_Chr4g0046131 41.329 346 179 10 3 329 2 342 5.58e-82 252
Msa0870090 MtrunA17_Chr1g0204011 44.860 321 163 8 16 333 13 322 2.76e-80 247
Msa0870090 MtrunA17_Chr4g0072091 43.464 306 164 6 32 333 23 323 2.64e-77 239
Msa0870090 MtrunA17_Chr4g0053871 42.525 301 166 4 31 329 25 320 6.27e-77 238
Msa0870090 MtrunA17_Chr1g0188431 37.647 340 191 7 1 333 2 327 4.71e-69 218
Msa0870090 MtrunA17_Chr4g0075241 36.646 322 200 3 13 333 9 327 1.19e-68 218
Msa0870090 MtrunA17_Chr5g0405991 39.812 319 179 8 19 333 7 316 5.83e-68 215
Msa0870090 MtrunA17_Chr8g0371381 40.924 303 168 7 33 333 26 319 1.40e-66 212
Msa0870090 MtrunA17_Chr4g0068621 40.656 305 175 5 31 333 36 336 3.55e-66 211
Msa0870090 MtrunA17_Chr1g0164891 40.594 303 171 6 37 333 93 392 6.93e-66 212
Msa0870090 MtrunA17_Chr3g0129051 37.309 327 186 6 12 333 10 322 1.86e-65 209
Msa0870090 MtrunA17_Chr6g0477071 36.474 329 188 8 11 333 29 342 2.74e-65 209
Msa0870090 MtrunA17_Chr2g0320091 37.725 334 191 6 1 333 1 318 3.49e-65 208
Msa0870090 MtrunA17_Chr4g0074851 36.637 333 203 4 3 333 2 328 5.25e-65 208
Msa0870090 MtrunA17_Chr3g0114451 36.760 321 191 5 17 333 6 318 7.57e-65 207
Msa0870090 MtrunA17_Chr5g0404721 37.333 300 182 5 37 333 34 330 1.38e-64 207
Msa0870090 MtrunA17_Chr6g0460711 38.941 321 184 6 13 333 6 314 1.67e-64 206
Msa0870090 MtrunA17_Chr5g0432441 36.176 340 191 8 3 333 4 326 1.76e-64 207
Msa0870090 MtrunA17_Chr4g0013191 40.667 300 166 6 37 333 50 340 2.60e-64 207
Msa0870090 MtrunA17_Chr1g0157051 36.810 326 192 9 11 332 2 317 5.37e-64 205
Msa0870090 MtrunA17_Chr7g0244461 38.978 313 181 5 22 333 9 312 5.42e-64 205
Msa0870090 MtrunA17_Chr7g0254231 39.535 301 171 5 33 333 22 311 5.48e-64 205
Msa0870090 MtrunA17_Chr2g0292181 39.355 310 179 6 29 333 34 339 1.45e-63 205
Msa0870090 MtrunA17_Chr4g0013721 38.511 309 178 7 29 333 96 396 1.60e-63 207
Msa0870090 MtrunA17_Chr4g0024121 37.942 311 180 8 29 333 23 326 1.63e-63 204
Msa0870090 MtrunA17_Chr7g0254201 38.312 308 182 4 26 333 13 312 1.97e-63 204
Msa0870090 MtrunA17_Chr2g0292251 39.228 311 178 7 29 333 24 329 2.64e-63 204
Msa0870090 MtrunA17_Chr5g0438021 34.639 332 198 6 8 333 7 325 9.13e-63 202
Msa0870090 MtrunA17_Chr1g0213061 40.952 315 171 9 23 333 18 321 1.06e-62 202
Msa0870090 MtrunA17_Chr1g0194151 38.138 333 190 8 12 333 6 333 1.76e-62 202
Msa0870090 MtrunA17_Chr5g0400331 38.065 310 179 6 33 333 26 331 1.94e-62 201
Msa0870090 MtrunA17_Chr2g0292241 39.355 310 179 7 29 333 25 330 5.21e-62 201
Msa0870090 MtrunA17_Chr7g0268501 39.172 314 175 10 26 333 17 320 5.49e-62 200
Msa0870090 MtrunA17_Chr7g0268521 39.172 314 175 10 26 333 17 320 5.49e-62 200
Msa0870090 MtrunA17_Chr2g0320071 35.976 328 193 6 11 333 2 317 6.81e-62 200
Msa0870090 MtrunA17_Chr2g0292211 38.710 310 181 6 29 333 36 341 1.22e-61 201
Msa0870090 MtrunA17_Chr2g0292151 39.550 311 177 7 29 333 25 330 1.30e-61 200
Msa0870090 MtrunA17_Chr4g0013821 37.267 322 190 7 16 333 11 324 4.93e-61 198
Msa0870090 MtrunA17_Chr3g0106901 39.688 320 182 6 16 333 13 323 1.61e-60 196
Msa0870090 MtrunA17_Chr7g0258811 36.119 335 206 5 4 333 40 371 2.94e-60 197
Msa0870090 MtrunA17_Chr4g0013171 35.514 321 194 7 18 333 9 321 3.00e-60 196
Msa0870090 MtrunA17_Chr2g0320101 35.608 337 193 6 1 333 1 317 3.12e-60 195
Msa0870090 MtrunA17_Chr4g0076211 39.934 303 168 9 34 333 42 333 4.15e-60 196
Msa0870090 MtrunA17_Chr7g0224371 36.615 325 192 7 13 333 8 322 4.98e-60 195
Msa0870090 MtrunA17_Chr3g0128061 37.805 328 194 6 9 333 6 326 5.63e-60 195
Msa0870090 MtrunA17_Chr7g0244451 38.312 308 172 6 31 333 22 316 6.86e-60 194
Msa0870090 MtrunA17_Chr4g0013201 38.158 304 178 5 31 333 44 338 8.66e-60 195
Msa0870090 MtrunA17_Chr6g0467251 36.577 298 179 5 33 329 36 324 1.08e-59 195
Msa0870090 MtrunA17_Chr1g0181481 36.928 306 185 4 30 333 24 323 1.13e-59 194
Msa0870090 MtrunA17_Chr2g0296621 37.049 305 175 9 33 333 50 341 1.37e-59 194
Msa0870090 MtrunA17_Chr1g0194271 36.391 338 196 7 12 333 6 340 1.89e-59 194
Msa0870090 MtrunA17_Chr4g0038161 35.938 320 193 6 18 333 9 320 1.95e-59 193
Msa0870090 MtrunA17_Chr1g0181511 36.275 306 187 4 30 333 24 323 2.37e-59 193
Msa0870090 MtrunA17_Chr8g0372601 36.275 306 189 5 31 333 28 330 2.69e-59 193
Msa0870090 MtrunA17_Chr3g0106921 34.049 326 201 7 11 333 6 320 3.10e-59 193
Msa0870090 MtrunA17_Chr3g0107881 38.264 311 177 8 29 333 23 324 3.17e-59 193
Msa0870090 MtrunA17_Chr2g0322861 36.533 323 191 9 19 333 70 386 5.70e-59 194
Msa0870090 MtrunA17_Chr2g0292091 37.013 308 185 7 31 333 22 325 6.36e-59 193
Msa0870090 MtrunA17_Chr3g0129061 35.976 328 189 6 12 333 10 322 1.08e-58 191
Msa0870090 MtrunA17_Chr2g0320061 34.615 338 196 7 1 333 1 318 1.89e-58 191
Msa0870090 MtrunA17_Chr5g0402581 34.568 324 198 6 16 333 11 326 2.68e-58 191
Msa0870090 MtrunA17_Chr2g0320031 34.431 334 203 6 1 333 1 319 4.26e-58 190
Msa0870090 MtrunA17_Chr4g0070951 37.309 327 186 10 19 333 10 329 6.07e-58 190
Msa0870090 MtrunA17_Chr4g0038151 36.066 305 189 4 30 333 22 321 7.86e-58 189
Msa0870090 MtrunA17_Chr5g0402571 33.951 324 201 5 16 333 10 326 1.49e-57 189
Msa0870090 MtrunA17_Chr1g0181431 35.410 305 189 4 31 333 25 323 1.92e-57 188
Msa0870090 MtrunA17_Chr2g0320051 35.207 338 194 7 1 333 1 318 2.14e-57 188
Msa0870090 MtrunA17_Chr2g0279041 35.435 333 199 8 9 333 1 325 2.64e-57 188
Msa0870090 MtrunA17_Chr3g0129041 34.441 331 199 5 9 333 4 322 8.17e-57 187
Msa0870090 MtrunA17_Chr2g0292261 36.129 310 189 6 29 333 25 330 2.69e-56 186
Msa0870090 MtrunA17_Chr4g0013181 35.667 300 183 6 36 333 62 353 5.84e-56 186
Msa0870090 MtrunA17_Chr4g0043391 34.579 321 197 7 18 333 12 324 6.73e-56 184
Msa0870090 MtrunA17_Chr3g0136751 34.568 324 200 6 15 333 6 322 2.70e-55 183
Msa0870090 MtrunA17_Chr2g0292111 36.774 310 187 6 29 333 25 330 3.18e-55 184
Msa0870090 MtrunA17_Chr4g0038171 35.220 318 199 6 18 333 9 321 3.30e-55 182
Msa0870090 MtrunA17_Chr2g0291751 36.656 311 186 7 29 333 25 330 5.65e-55 183
Msa0870090 MtrunA17_Chr1g0175561 35.650 331 202 9 9 333 1 326 6.16e-55 182
Msa0870090 MtrunA17_Chr2g0292271 36.050 319 195 6 20 333 16 330 6.44e-55 182
Msa0870090 MtrunA17_Chr2g0292101 36.538 312 181 7 31 333 23 326 1.18e-54 182
Msa0870090 MtrunA17_Chr2g0292291 34.505 313 191 5 29 333 26 332 1.93e-54 181
Msa0870090 MtrunA17_Chr2g0299691 35.780 327 193 7 18 333 38 358 2.04e-54 182
Msa0870090 MtrunA17_Chr5g0432341 36.893 309 179 8 31 333 23 321 2.74e-54 180
Msa0870090 MtrunA17_Chr5g0432351 36.246 309 181 8 31 333 23 321 4.15e-54 180
Msa0870090 MtrunA17_Chr5g0413051 37.134 307 177 8 37 333 77 377 4.44e-54 181
Msa0870090 MtrunA17_Chr5g0432331 33.934 333 204 8 7 333 30 352 4.84e-53 178
Msa0870090 MtrunA17_Chr6g0467121 36.213 301 181 5 33 333 74 363 5.33e-53 179
Msa0870090 MtrunA17_Chr4g0063671 35.385 325 188 9 20 333 7 320 5.44e-52 174
Msa0870090 MtrunA17_Chr2g0329641 37.338 308 180 7 32 333 35 335 9.35e-52 174
Msa0870090 MtrunA17_Chr6g0467161 31.611 329 206 6 15 333 17 336 8.27e-51 172
Msa0870090 MtrunA17_Chr5g0421411 36.268 284 169 7 58 333 6 285 9.78e-51 170
Msa0870090 MtrunA17_Chr1g0155611 34.967 306 190 6 33 333 46 347 1.25e-50 171
Msa0870090 MtrunA17_Chr2g0279061 38.077 260 148 6 80 333 14 266 4.17e-47 160
Msa0870090 MtrunA17_Chr2g0278671 34.395 314 187 8 29 333 20 323 3.41e-46 159
Msa0870090 MtrunA17_Chr2g0316791 33.433 335 187 9 31 332 74 405 1.44e-45 160
Msa0870090 MtrunA17_Chr2g0316481 32.836 335 189 9 31 332 74 405 4.59e-45 158
Msa0870090 MtrunA17_Chr2g0316831 32.836 335 189 9 31 332 110 441 1.08e-44 158
Msa0870090 MtrunA17_Chr2g0316191 32.440 336 190 8 31 332 74 406 1.38e-44 157
Msa0870090 MtrunA17_Chr2g0311251 32.537 335 189 9 31 332 9 339 6.22e-42 149
Msa0870090 MtrunA17_Chr2g0311241 30.851 376 182 11 31 332 58 429 5.31e-40 145
Msa0870090 MtrunA17_Chr3g0114461 39.378 193 110 3 142 333 6 192 1.03e-38 135
Msa0870090 MtrunA17_Chr5g0432401 30.650 323 169 8 16 332 12 285 3.44e-37 134
Msa0870090 MtrunA17_Chr4g0004591 28.349 321 167 5 33 332 77 355 2.34e-34 129
Msa0870090 MtrunA17_Chr2g0292281 33.810 210 124 4 128 333 18 216 4.64e-32 120
Msa0870090 MtrunA17_Chr2g0316811 38.372 172 101 3 31 200 48 216 5.00e-31 119
Msa0870090 MtrunA17_Chr2g0316141 31.111 270 166 5 80 332 11 277 2.76e-27 108
Msa0870090 MtrunA17_Chr2g0316181 31.111 270 166 5 80 332 11 277 2.76e-27 108
Msa0870090 MtrunA17_Chr1g0181501 34.715 193 116 4 145 333 3 189 1.75e-25 101
Msa0870090 MtrunA17_Chr1g0181491 37.600 125 74 3 30 154 9 129 1.72e-19 83.6
Msa0870090 MtrunA17_Chr3g0114491 37.069 116 71 2 30 145 15 128 3.04e-18 80.1
Msa0870090 MtrunA17_Chr7g0254181 43.396 106 55 3 96 201 22 122 1.51e-17 78.6
Msa0870090 MtrunA17_Chr3g0137751 26.217 267 134 7 56 312 97 310 2.48e-16 78.6
Msa0870090 MtrunA17_Chr5g0432321 31.707 123 77 2 156 278 17 132 5.27e-15 70.9
Msa0870090 MtrunA17_Chr4g0013811 33.333 78 52 0 141 218 1 78 2.01e-12 62.0
Msa0870090 MtrunA17_Chr7g0254171 42.466 73 40 1 80 152 4 74 4.73e-12 62.8
Msa0870090 MtrunA17_Chr1g0196191 57.377 61 24 1 80 140 31 89 7.79e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0870090 AT5G40150.1 64.918 305 103 2 29 333 28 328 3.25e-152 431
Msa0870090 AT3G28200.1 64.918 305 102 2 29 333 17 316 6.52e-151 427
Msa0870090 AT5G47000.1 55.482 301 131 2 33 333 33 330 2.92e-123 357
Msa0870090 AT1G24110.1 53.420 307 141 2 28 333 17 322 4.42e-121 352
Msa0870090 AT4G17690.1 55.482 301 130 2 33 333 26 322 2.13e-120 350
Msa0870090 AT4G37530.1 44.872 312 166 4 26 333 20 329 2.88e-90 273
Msa0870090 AT5G14130.1 42.857 322 176 5 16 333 13 330 1.22e-87 266
Msa0870090 AT5G14130.2 42.857 322 176 5 16 333 54 371 3.18e-87 267
Msa0870090 AT4G37520.1 43.648 307 167 4 31 333 25 329 3.67e-86 263
Msa0870090 AT5G67400.1 43.689 309 168 4 29 333 23 329 7.19e-86 262
Msa0870090 AT4G37520.2 43.648 307 164 5 31 333 25 326 5.47e-84 257
Msa0870090 AT2G18980.1 42.997 307 165 5 31 333 23 323 1.44e-81 251
Msa0870090 AT3G49960.1 41.748 309 174 4 29 333 23 329 4.24e-80 247
Msa0870090 AT4G37530.2 45.627 263 137 4 26 284 20 280 5.37e-77 238
Msa0870090 AT4G30170.1 40.717 307 172 5 31 333 25 325 2.14e-76 238
Msa0870090 AT2G34060.1 36.364 341 197 5 8 329 3 342 1.14e-71 226
Msa0870090 AT5G17820.1 40.549 328 168 9 11 333 8 313 1.32e-70 222
Msa0870090 AT3G17070.1 37.982 337 194 8 6 333 9 339 1.48e-70 223
Msa0870090 AT5G51890.1 40.705 312 171 8 20 326 13 315 8.89e-70 221
Msa0870090 AT5G17820.2 40.549 328 168 9 11 333 61 366 1.37e-69 221
Msa0870090 AT4G33420.1 37.309 327 189 6 9 333 13 325 4.39e-69 219
Msa0870090 AT4G33420.2 37.309 327 189 6 9 333 60 372 2.01e-68 219
Msa0870090 AT4G36430.1 38.889 306 179 6 32 333 29 330 9.84e-67 213
Msa0870090 AT5G66390.1 40.864 301 170 6 37 333 37 333 1.19e-66 213
Msa0870090 AT1G05260.1 37.072 321 190 8 17 333 13 325 4.77e-66 211
Msa0870090 AT4G31760.1 36.391 327 194 6 11 333 10 326 2.64e-65 209
Msa0870090 AT4G11290.1 37.730 326 192 8 14 333 6 326 3.24e-65 209
Msa0870090 AT2G22420.1 37.082 329 189 8 12 333 2 319 5.38e-65 208
Msa0870090 AT5G05340.1 36.774 310 178 5 30 333 27 324 7.09e-65 208
Msa0870090 AT4G16270.1 38.961 308 174 9 33 333 48 348 1.23e-64 208
Msa0870090 AT2G18150.1 37.209 301 181 6 37 333 40 336 8.58e-64 206
Msa0870090 AT2G18140.1 36.061 330 198 7 13 333 10 335 9.91e-64 205
Msa0870090 AT5G19880.1 38.730 315 179 6 28 333 20 329 2.25e-63 204
Msa0870090 AT3G50990.1 37.864 309 184 6 29 333 37 341 3.34e-63 204
Msa0870090 AT2G24800.1 36.808 307 184 4 31 333 29 329 1.93e-62 202
Msa0870090 AT1G71695.1 37.086 302 183 4 33 333 44 339 3.72e-62 202
Msa0870090 AT4G21960.1 36.061 330 203 4 6 333 4 327 6.25e-62 201
Msa0870090 AT4G08770.1 38.486 317 184 8 24 333 15 327 2.25e-61 199
Msa0870090 AT1G14540.1 35.093 322 200 6 14 333 1 315 7.15e-61 197
Msa0870090 AT2G37130.1 36.013 311 190 5 26 333 23 327 7.49e-61 197
Msa0870090 AT3G21770.1 36.538 312 189 7 22 329 18 324 1.89e-60 197
Msa0870090 AT2G37130.2 36.755 302 182 5 35 333 1 296 3.14e-60 195
Msa0870090 AT5G42180.1 34.954 329 196 9 9 332 1 316 3.48e-60 196
Msa0870090 AT4G08780.1 38.095 315 184 8 26 333 17 327 1.16e-59 195
Msa0870090 AT2G38380.1 36.452 310 189 6 29 333 27 333 1.97e-59 195
Msa0870090 AT1G30870.1 39.414 307 168 10 33 333 51 345 3.37e-59 194
Msa0870090 AT3G03670.1 35.952 331 198 6 6 333 2 321 3.99e-59 193
Msa0870090 AT2G35380.1 38.762 307 173 7 37 333 34 335 6.02e-59 193
Msa0870090 AT1G05240.1 38.158 304 173 8 33 329 26 321 6.99e-59 192
Msa0870090 AT1G05250.1 38.158 304 173 8 33 329 26 321 6.99e-59 192
Msa0870090 AT5G06730.1 35.629 334 204 7 8 333 4 334 1.48e-58 192
Msa0870090 AT2G38390.1 35.435 333 205 7 7 333 5 333 1.61e-58 192
Msa0870090 AT5G06720.1 37.299 311 184 8 29 333 28 333 2.01e-58 192
Msa0870090 AT1G68850.1 36.102 313 181 9 33 333 30 335 6.29e-58 190
Msa0870090 AT3G32980.1 35.220 318 197 6 22 333 20 334 7.61e-58 191
Msa0870090 AT3G01190.1 36.137 321 188 8 19 333 12 321 1.03e-57 189
Msa0870090 AT1G14550.1 35.692 325 198 7 12 333 5 321 2.00e-57 189
Msa0870090 AT5G64110.1 37.748 302 174 7 37 333 38 330 3.06e-57 188
Msa0870090 AT3G49120.1 34.906 318 198 6 22 333 21 335 4.05e-57 189
Msa0870090 AT5G58390.1 34.043 329 196 7 13 333 1 316 4.10e-57 187
Msa0870090 AT5G64120.1 34.731 334 201 8 9 333 3 328 1.97e-56 186
Msa0870090 AT5G58400.1 35.048 311 185 7 29 333 26 325 6.64e-56 185
Msa0870090 AT4G33870.1 33.143 350 195 5 19 332 54 400 8.77e-56 187
Msa0870090 AT3G49110.1 34.591 318 199 6 22 333 22 336 1.84e-55 184
Msa0870090 AT2G39040.1 38.339 313 179 9 30 333 43 350 2.92e-55 184
Msa0870090 AT5G39580.1 38.158 304 172 8 35 333 27 319 5.40e-55 182
Msa0870090 AT3G17070.2 39.464 261 146 6 80 333 21 276 1.16e-54 180
Msa0870090 AT1G44970.1 34.936 312 186 7 31 333 43 346 1.06e-53 180
Msa0870090 AT5G15180.1 34.639 332 195 9 14 333 8 329 1.42e-53 179
Msa0870090 AT4G26010.1 34.056 323 196 8 12 333 3 309 1.69e-53 178
Msa0870090 AT1G34510.1 35.802 324 189 8 12 333 3 309 2.12e-53 178
Msa0870090 AT1G49570.1 34.754 305 189 5 31 329 46 346 2.29e-53 179
Msa0870090 AT4G26010.2 34.056 323 196 8 12 333 31 337 3.03e-53 178
Msa0870090 AT5G19890.1 33.824 340 205 10 1 333 1 327 1.89e-51 173
Msa0870090 AT4G25980.1 32.941 340 198 10 5 333 6 326 1.09e-50 171
Msa0870090 AT5G64100.1 36.184 304 178 8 35 333 39 331 2.92e-50 170
Msa0870090 AT2G41480.1 36.156 307 175 8 37 333 33 328 1.58e-49 168
Msa0870090 AT2G43480.1 35.224 335 201 8 7 333 9 335 3.04e-49 168
Msa0870090 AT5G24070.1 35.484 310 184 7 32 333 34 335 1.97e-48 166
Msa0870090 AT5G22410.1 34.539 304 184 9 32 329 27 321 9.17e-48 164
Msa0870090 AT1G77100.1 32.934 334 199 11 9 333 2 319 4.70e-44 154
Msa0870090 AT2G35380.2 38.627 233 132 4 110 333 17 247 5.79e-43 149
Msa0870090 AT2G24800.2 39.412 170 97 3 31 200 29 192 4.83e-33 123
Msa0870090 AT4G25980.2 34.328 201 116 6 3 202 49 234 2.62e-29 114
Msa0870090 AT5G39580.2 37.640 178 104 4 35 212 27 197 6.95e-27 106
Msa0870090 AT4G32320.1 26.786 280 136 7 43 312 99 319 1.92e-17 82.4
Msa0870090 AT4G08390.3 30.151 199 110 4 128 318 185 362 2.41e-16 79.3
Msa0870090 AT4G08390.2 30.151 199 110 4 128 318 186 363 2.45e-16 79.3
Msa0870090 AT4G08390.5 30.151 199 110 4 128 318 186 363 2.45e-16 79.3
Msa0870090 AT4G08390.1 30.151 199 110 4 128 318 186 363 2.45e-16 79.3
Msa0870090 AT3G42570.1 41.935 93 53 1 111 202 57 149 9.14e-16 73.9
Msa0870090 AT1G07890.6 30.256 195 93 6 127 316 90 246 2.40e-14 72.0
Msa0870090 AT1G07890.2 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT1G07890.8 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT1G07890.4 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT1G07890.7 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT1G07890.1 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT1G07890.3 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT1G07890.5 30.256 195 93 6 127 316 90 246 2.78e-14 72.0
Msa0870090 AT3G09640.2 27.230 213 112 6 108 316 73 246 2.90e-14 72.0
Msa0870090 AT3G09640.1 27.230 213 112 6 108 316 73 246 2.90e-14 72.0

Find 71 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCAAGATTATTTCTTTA+AGG 0.143575 6_1:+4371557 Msa0870090:CDS
CAGAATTTACCTAAAGGTTT+AGG 0.165196 6_1:+4371465 Msa0870090:CDS
TAAACATTATCAAACTTATT+TGG 0.189105 6_1:-4371438 None:intergenic
AGAATTTACCTAAAGGTTTA+GGG 0.281875 6_1:+4371466 Msa0870090:CDS
TACAACAATTCTTCTGGTTC+TGG 0.286642 6_1:+4371318 Msa0870090:CDS
TTTAACCCTTCAACAAATCT+TGG 0.291351 6_1:-4371354 None:intergenic
GATATTTACAACAATTCTTC+TGG 0.318776 6_1:+4371312 Msa0870090:CDS
TTCAAAACCCCTAAACCTTT+AGG 0.320573 6_1:-4371474 None:intergenic
TGTTTGTTTGTAGTAATCTA+AGG 0.321314 6_1:-4370770 None:intergenic
AGTTTCAATATTCGCGAAAC+GGG 0.324305 6_1:+4371212 Msa0870090:CDS
CACGTTCAGCTTTGTTGAAA+GGG 0.328180 6_1:-4370939 None:intergenic
AATTCTTCTGGTTCTGGTTC+AGG 0.343705 6_1:+4371324 Msa0870090:CDS
GACATCAACCTCTCTCTTCC+AGG 0.344076 6_1:+4370967 Msa0870090:CDS
GAAGAAATGGTTGCTTTATC+TGG 0.356535 6_1:+4371246 Msa0870090:CDS
GTCATTGTCATTGACGGCTT+TGG 0.370495 6_1:-4371183 None:intergenic
ACGGAGAGTGGCGGCGGCGG+TGG 0.370801 6_1:-4370854 None:intergenic
CGGCGGCGGTGGTTGGAGAT+TGG 0.376609 6_1:-4370843 None:intergenic
TTAGCAAATCTTTCCACAAA+AGG 0.403926 6_1:-4371534 None:intergenic
ATCTGTGTCATTGTCATTGA+CGG 0.409866 6_1:-4371189 None:intergenic
TCACATTGTAGTGAAATTAG+TGG 0.412518 6_1:+4371288 Msa0870090:CDS
TCCACAAAAGGCTTAGTTGA+AGG 0.418442 6_1:-4371522 None:intergenic
GAGACGGAGAGTGGCGGCGG+CGG 0.421113 6_1:-4370857 None:intergenic
AGAGTGGCGGCGGCGGTGGT+TGG 0.426793 6_1:-4370850 None:intergenic
GAAGAGACGGAGAGTGGCGG+CGG 0.442594 6_1:-4370860 None:intergenic
TTATCTGGTGCTCATACAGT+TGG 0.446715 6_1:+4371261 Msa0870090:CDS
TGACAACAATGATGAGGTTA+AGG 0.448667 6_1:-4370692 None:intergenic
TCACGTTCAGCTTTGTTGAA+AGG 0.455448 6_1:-4370940 None:intergenic
CGTCGCAGCCGTTAGGGAGG+AGG 0.467163 6_1:-4370894 None:intergenic
ACGGAGGCGTCGCAGCCGTT+AGG 0.473671 6_1:-4370901 None:intergenic
GCAAGAGACAGTGTTGGGAC+AGG 0.474541 6_1:-4371037 None:intergenic
AGGGGTTGAAGAGAGGAGGA+CGG 0.478008 6_1:-4370920 None:intergenic
CTCGGCCGTCGCGACGGCCG+AGG 0.479098 6_1:+4371129 Msa0870090:CDS
CGTGACCTTCTTATCATGCT+TGG 0.482690 6_1:+4371084 Msa0870090:CDS
TGTTGAAAGGGGTTGAAGAG+AGG 0.484577 6_1:-4370927 None:intergenic
GATTAGAAGAAGATGTGATC+AGG 0.486639 6_1:+4371641 Msa0870090:CDS
CGGAGGCGTCGCAGCCGTTA+GGG 0.497652 6_1:-4370900 None:intergenic
GAATGTTCAAACTGGTAGGA+AGG 0.500115 6_1:+4371614 Msa0870090:CDS
TCTGTGTCATCTGCCGTTGA+CGG 0.502316 6_1:+4371153 Msa0870090:CDS
TATAATCCAAGATTTGTTGA+AGG 0.505931 6_1:+4371348 Msa0870090:CDS
CTCGGCCGTCGCGACGGCCG+AGG 0.508766 6_1:-4371128 None:intergenic
TGAATGATTTGTTCGAATTG+TGG 0.511315 6_1:-4370796 None:intergenic
TAGTTTCAATATTCGCGAAA+CGG 0.511725 6_1:+4371211 Msa0870090:CDS
TCAGAGCAAGAGACAGTGTT+GGG 0.512165 6_1:-4371042 None:intergenic
GTTTACCTCGGCCGTCGCGA+CGG 0.515832 6_1:+4371123 Msa0870090:CDS
ATGAGGTCAAAGGAGTCTCC+TGG 0.515886 6_1:-4370985 None:intergenic
GGCAGTCGTGGAGGAAGAGA+CGG 0.531026 6_1:-4370873 None:intergenic
ATAATCCAAGATTTGTTGAA+GGG 0.533288 6_1:+4371349 Msa0870090:CDS
GACCTTCTTATCATGCTTGG+TGG 0.534460 6_1:+4371087 Msa0870090:CDS
TGAAAGGGGTTGAAGAGAGG+AGG 0.534695 6_1:-4370924 None:intergenic
GACCACCAAGCATGATAAGA+AGG 0.556948 6_1:-4371089 None:intergenic
CGTTAGGGAGGAGGCAGTCG+TGG 0.559904 6_1:-4370885 None:intergenic
AATGTTCAAACTGGTAGGAA+GGG 0.561658 6_1:+4371615 Msa0870090:CDS
ACGTTCAGCTTTGTTGAAAG+GGG 0.574965 6_1:-4370938 None:intergenic
GATACGTACGATGAGGTCAA+AGG 0.582070 6_1:-4370995 None:intergenic
CACGACTGCCTCCTCCCTAA+CGG 0.589429 6_1:+4370886 Msa0870090:CDS
CCTCATTACAATGTTTACCT+CGG 0.591829 6_1:+4371111 Msa0870090:CDS
GAATTTACCTAAAGGTTTAG+GGG 0.612906 6_1:+4371467 Msa0870090:CDS
GTCAGAGCAAGAGACAGTGT+TGG 0.614569 6_1:-4371043 None:intergenic
CTTTGGAAGAAAGCCGTCAA+CGG 0.615992 6_1:-4371166 None:intergenic
AGGCGTCGCAGCCGTTAGGG+AGG 0.621783 6_1:-4370897 None:intergenic
GTGGAGGAAGAGACGGAGAG+TGG 0.623125 6_1:-4370866 None:intergenic
AGGAGTCTCCTGGAAGAGAG+AGG 0.623254 6_1:-4370975 None:intergenic
GTTTCAATATTCGCGAAACG+GGG 0.630647 6_1:+4371213 Msa0870090:CDS
GGTTGAAGAGAGGAGGACGG+AGG 0.631104 6_1:-4370917 None:intergenic
GAGGAAGAGACGGAGAGTGG+CGG 0.632804 6_1:-4370863 None:intergenic
TAGGGAGGAGGCAGTCGTGG+AGG 0.639200 6_1:-4370882 None:intergenic
CGGCAGATGACACAGAACCT+CGG 0.640173 6_1:-4371146 None:intergenic
GAACAATGACAACAATGATG+AGG 0.640646 6_1:-4370698 None:intergenic
CCGAGGTAAACATTGTAATG+AGG 0.647436 6_1:-4371111 None:intergenic
GGGACAGGAGAGTTCAAGAG+CGG 0.649529 6_1:-4371022 None:intergenic
GAAGGGTTAAAGAAAGCTTG+TGG 0.742356 6_1:+4371366 Msa0870090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACATTATCAAACTTATT+TGG - chr6_1:4371441-4371460 None:intergenic 15.0%
!! TAAACATTATCAAACTTATT+TGG - chr6_1:4371441-4371460 None:intergenic 15.0%
!!! TATTTTCAGAATTTACCTAA+AGG + chr6_1:4371459-4371478 Msa0870090:CDS 20.0%
!!! TATTTTCAGAATTTACCTAA+AGG + chr6_1:4371459-4371478 Msa0870090:CDS 20.0%
!!! ATCTAAGGTTAGTTTTGATT+CGG - chr6_1:4370758-4370777 None:intergenic 25.0%
! TGTTTGTTTGTAGTAATCTA+AGG - chr6_1:4370773-4370792 None:intergenic 25.0%
! GATATTTACAACAATTCTTC+TGG + chr6_1:4371312-4371331 Msa0870090:CDS 25.0%
!!! TATAATCCAAGATTTGTTGA+AGG + chr6_1:4371348-4371367 Msa0870090:CDS 25.0%
!!! ATAATCCAAGATTTGTTGAA+GGG + chr6_1:4371349-4371368 Msa0870090:CDS 25.0%
! TCATTAAAAACAGACAAAGT+AGG - chr6_1:4371408-4371427 None:intergenic 25.0%
! AGAATTTACCTAAAGGTTTA+GGG + chr6_1:4371466-4371485 Msa0870090:CDS 25.0%
!! GGATCAAGATTATTTCTTTA+AGG + chr6_1:4371557-4371576 Msa0870090:CDS 25.0%
!!! ATCTAAGGTTAGTTTTGATT+CGG - chr6_1:4370758-4370777 None:intergenic 25.0%
! TGTTTGTTTGTAGTAATCTA+AGG - chr6_1:4370773-4370792 None:intergenic 25.0%
! GATATTTACAACAATTCTTC+TGG + chr6_1:4371312-4371331 Msa0870090:CDS 25.0%
!!! TATAATCCAAGATTTGTTGA+AGG + chr6_1:4371348-4371367 Msa0870090:CDS 25.0%
!!! ATAATCCAAGATTTGTTGAA+GGG + chr6_1:4371349-4371368 Msa0870090:CDS 25.0%
! TCATTAAAAACAGACAAAGT+AGG - chr6_1:4371408-4371427 None:intergenic 25.0%
! AGAATTTACCTAAAGGTTTA+GGG + chr6_1:4371466-4371485 Msa0870090:CDS 25.0%
!! GGATCAAGATTATTTCTTTA+AGG + chr6_1:4371557-4371576 Msa0870090:CDS 25.0%
!! TGAATGATTTGTTCGAATTG+TGG - chr6_1:4370799-4370818 None:intergenic 30.0%
TAGTTTCAATATTCGCGAAA+CGG + chr6_1:4371211-4371230 Msa0870090:CDS 30.0%
TCACATTGTAGTGAAATTAG+TGG + chr6_1:4371288-4371307 Msa0870090:CDS 30.0%
TTTAACCCTTCAACAAATCT+TGG - chr6_1:4371357-4371376 None:intergenic 30.0%
CAGAATTTACCTAAAGGTTT+AGG + chr6_1:4371465-4371484 Msa0870090:CDS 30.0%
GAATTTACCTAAAGGTTTAG+GGG + chr6_1:4371467-4371486 Msa0870090:CDS 30.0%
TTAGCAAATCTTTCCACAAA+AGG - chr6_1:4371537-4371556 None:intergenic 30.0%
!!! TTTTGTGGAAAGATTTGCTA+AGG + chr6_1:4371536-4371555 Msa0870090:CDS 30.0%
! AGTCTTTTGAATGTTCAAAC+TGG + chr6_1:4371606-4371625 Msa0870090:CDS 30.0%
! TTTTGAATGTTCAAACTGGT+AGG + chr6_1:4371610-4371629 Msa0870090:CDS 30.0%
!! TGAATGATTTGTTCGAATTG+TGG - chr6_1:4370799-4370818 None:intergenic 30.0%
TAGTTTCAATATTCGCGAAA+CGG + chr6_1:4371211-4371230 Msa0870090:CDS 30.0%
TCACATTGTAGTGAAATTAG+TGG + chr6_1:4371288-4371307 Msa0870090:CDS 30.0%
TTTAACCCTTCAACAAATCT+TGG - chr6_1:4371357-4371376 None:intergenic 30.0%
CAGAATTTACCTAAAGGTTT+AGG + chr6_1:4371465-4371484 Msa0870090:CDS 30.0%
GAATTTACCTAAAGGTTTAG+GGG + chr6_1:4371467-4371486 Msa0870090:CDS 30.0%
TTAGCAAATCTTTCCACAAA+AGG - chr6_1:4371537-4371556 None:intergenic 30.0%
!!! TTTTGTGGAAAGATTTGCTA+AGG + chr6_1:4371536-4371555 Msa0870090:CDS 30.0%
! AGTCTTTTGAATGTTCAAAC+TGG + chr6_1:4371606-4371625 Msa0870090:CDS 30.0%
! TTTTGAATGTTCAAACTGGT+AGG + chr6_1:4371610-4371629 Msa0870090:CDS 30.0%
TGACAACAATGATGAGGTTA+AGG - chr6_1:4370695-4370714 None:intergenic 35.0%
GAACAATGACAACAATGATG+AGG - chr6_1:4370701-4370720 None:intergenic 35.0%
CCTCATTACAATGTTTACCT+CGG + chr6_1:4371111-4371130 Msa0870090:CDS 35.0%
! ATCTGTGTCATTGTCATTGA+CGG - chr6_1:4371192-4371211 None:intergenic 35.0%
AGTTTCAATATTCGCGAAAC+GGG + chr6_1:4371212-4371231 Msa0870090:CDS 35.0%
! GGGTTTTACAGTTGAAGAAA+TGG + chr6_1:4371233-4371252 Msa0870090:CDS 35.0%
! GAAGAAATGGTTGCTTTATC+TGG + chr6_1:4371246-4371265 Msa0870090:CDS 35.0%
!! TACAACAATTCTTCTGGTTC+TGG + chr6_1:4371318-4371337 Msa0870090:CDS 35.0%
TTCAAAACCCCTAAACCTTT+AGG - chr6_1:4371477-4371496 None:intergenic 35.0%
AATGTTCAAACTGGTAGGAA+GGG + chr6_1:4371615-4371634 Msa0870090:CDS 35.0%
GATTAGAAGAAGATGTGATC+AGG + chr6_1:4371641-4371660 Msa0870090:CDS 35.0%
TGACAACAATGATGAGGTTA+AGG - chr6_1:4370695-4370714 None:intergenic 35.0%
GAACAATGACAACAATGATG+AGG - chr6_1:4370701-4370720 None:intergenic 35.0%
CCTCATTACAATGTTTACCT+CGG + chr6_1:4371111-4371130 Msa0870090:CDS 35.0%
! ATCTGTGTCATTGTCATTGA+CGG - chr6_1:4371192-4371211 None:intergenic 35.0%
AGTTTCAATATTCGCGAAAC+GGG + chr6_1:4371212-4371231 Msa0870090:CDS 35.0%
! GGGTTTTACAGTTGAAGAAA+TGG + chr6_1:4371233-4371252 Msa0870090:CDS 35.0%
! GAAGAAATGGTTGCTTTATC+TGG + chr6_1:4371246-4371265 Msa0870090:CDS 35.0%
!! TACAACAATTCTTCTGGTTC+TGG + chr6_1:4371318-4371337 Msa0870090:CDS 35.0%
TTCAAAACCCCTAAACCTTT+AGG - chr6_1:4371477-4371496 None:intergenic 35.0%
AATGTTCAAACTGGTAGGAA+GGG + chr6_1:4371615-4371634 Msa0870090:CDS 35.0%
GATTAGAAGAAGATGTGATC+AGG + chr6_1:4371641-4371660 Msa0870090:CDS 35.0%
!!! GTTTTGATTCGGAGAGGTTA+AGG - chr6_1:4370747-4370766 None:intergenic 40.0%
!!! AGGTTAGTTTTGATTCGGAG+AGG - chr6_1:4370753-4370772 None:intergenic 40.0%
! TGGAGATTGGATCTGTTTTG+AGG - chr6_1:4370833-4370852 None:intergenic 40.0%
!! ACGTTCAGCTTTGTTGAAAG+GGG - chr6_1:4370941-4370960 None:intergenic 40.0%
!! CACGTTCAGCTTTGTTGAAA+GGG - chr6_1:4370942-4370961 None:intergenic 40.0%
!! TCACGTTCAGCTTTGTTGAA+AGG - chr6_1:4370943-4370962 None:intergenic 40.0%
CCGAGGTAAACATTGTAATG+AGG - chr6_1:4371114-4371133 None:intergenic 40.0%
GTTTCAATATTCGCGAAACG+GGG + chr6_1:4371213-4371232 Msa0870090:CDS 40.0%
TTATCTGGTGCTCATACAGT+TGG + chr6_1:4371261-4371280 Msa0870090:CDS 40.0%
!! AATTCTTCTGGTTCTGGTTC+AGG + chr6_1:4371324-4371343 Msa0870090:CDS 40.0%
GAAGGGTTAAAGAAAGCTTG+TGG + chr6_1:4371366-4371385 Msa0870090:CDS 40.0%
!!! GGGGTTTTGAAATCAGATCA+TGG + chr6_1:4371486-4371505 Msa0870090:CDS 40.0%
! TCCTTCAACTAAGCCTTTTG+TGG + chr6_1:4371521-4371540 Msa0870090:CDS 40.0%
TCCACAAAAGGCTTAGTTGA+AGG - chr6_1:4371525-4371544 None:intergenic 40.0%
GAATGTTCAAACTGGTAGGA+AGG + chr6_1:4371614-4371633 Msa0870090:CDS 40.0%
!!! GTTTTGATTCGGAGAGGTTA+AGG - chr6_1:4370747-4370766 None:intergenic 40.0%
!!! AGGTTAGTTTTGATTCGGAG+AGG - chr6_1:4370753-4370772 None:intergenic 40.0%
! TGGAGATTGGATCTGTTTTG+AGG - chr6_1:4370833-4370852 None:intergenic 40.0%
!! ACGTTCAGCTTTGTTGAAAG+GGG - chr6_1:4370941-4370960 None:intergenic 40.0%
!! CACGTTCAGCTTTGTTGAAA+GGG - chr6_1:4370942-4370961 None:intergenic 40.0%
!! TCACGTTCAGCTTTGTTGAA+AGG - chr6_1:4370943-4370962 None:intergenic 40.0%
CCGAGGTAAACATTGTAATG+AGG - chr6_1:4371114-4371133 None:intergenic 40.0%
GTTTCAATATTCGCGAAACG+GGG + chr6_1:4371213-4371232 Msa0870090:CDS 40.0%
TTATCTGGTGCTCATACAGT+TGG + chr6_1:4371261-4371280 Msa0870090:CDS 40.0%
!! AATTCTTCTGGTTCTGGTTC+AGG + chr6_1:4371324-4371343 Msa0870090:CDS 40.0%
GAAGGGTTAAAGAAAGCTTG+TGG + chr6_1:4371366-4371385 Msa0870090:CDS 40.0%
!!! GGGGTTTTGAAATCAGATCA+TGG + chr6_1:4371486-4371505 Msa0870090:CDS 40.0%
! TCCTTCAACTAAGCCTTTTG+TGG + chr6_1:4371521-4371540 Msa0870090:CDS 40.0%
TCCACAAAAGGCTTAGTTGA+AGG - chr6_1:4371525-4371544 None:intergenic 40.0%
GAATGTTCAAACTGGTAGGA+AGG + chr6_1:4371614-4371633 Msa0870090:CDS 40.0%
TGTTGAAAGGGGTTGAAGAG+AGG - chr6_1:4370930-4370949 None:intergenic 45.0%
GATACGTACGATGAGGTCAA+AGG - chr6_1:4370998-4371017 None:intergenic 45.0%
!! CGGTTTTGATACGTACGATG+AGG - chr6_1:4371005-4371024 None:intergenic 45.0%
TCAGAGCAAGAGACAGTGTT+GGG - chr6_1:4371045-4371064 None:intergenic 45.0%
CGTGACCTTCTTATCATGCT+TGG + chr6_1:4371084-4371103 Msa0870090:CDS 45.0%
GACCTTCTTATCATGCTTGG+TGG + chr6_1:4371087-4371106 Msa0870090:CDS 45.0%
GACCACCAAGCATGATAAGA+AGG - chr6_1:4371092-4371111 None:intergenic 45.0%
! CTTTGGAAGAAAGCCGTCAA+CGG - chr6_1:4371169-4371188 None:intergenic 45.0%
GTCATTGTCATTGACGGCTT+TGG - chr6_1:4371186-4371205 None:intergenic 45.0%
TGTTGAAAGGGGTTGAAGAG+AGG - chr6_1:4370930-4370949 None:intergenic 45.0%
GATACGTACGATGAGGTCAA+AGG - chr6_1:4370998-4371017 None:intergenic 45.0%
!! CGGTTTTGATACGTACGATG+AGG - chr6_1:4371005-4371024 None:intergenic 45.0%
TCAGAGCAAGAGACAGTGTT+GGG - chr6_1:4371045-4371064 None:intergenic 45.0%
CGTGACCTTCTTATCATGCT+TGG + chr6_1:4371084-4371103 Msa0870090:CDS 45.0%
GACCTTCTTATCATGCTTGG+TGG + chr6_1:4371087-4371106 Msa0870090:CDS 45.0%
GACCACCAAGCATGATAAGA+AGG - chr6_1:4371092-4371111 None:intergenic 45.0%
! CTTTGGAAGAAAGCCGTCAA+CGG - chr6_1:4371169-4371188 None:intergenic 45.0%
GTCATTGTCATTGACGGCTT+TGG - chr6_1:4371186-4371205 None:intergenic 45.0%
TGAAAGGGGTTGAAGAGAGG+AGG - chr6_1:4370927-4370946 None:intergenic 50.0%
GACATCAACCTCTCTCTTCC+AGG + chr6_1:4370967-4370986 Msa0870090:CDS 50.0%
ATGAGGTCAAAGGAGTCTCC+TGG - chr6_1:4370988-4371007 None:intergenic 50.0%
GTCAGAGCAAGAGACAGTGT+TGG - chr6_1:4371046-4371065 None:intergenic 50.0%
TCTGTGTCATCTGCCGTTGA+CGG + chr6_1:4371153-4371172 Msa0870090:CDS 50.0%
TGAAAGGGGTTGAAGAGAGG+AGG - chr6_1:4370927-4370946 None:intergenic 50.0%
GACATCAACCTCTCTCTTCC+AGG + chr6_1:4370967-4370986 Msa0870090:CDS 50.0%
ATGAGGTCAAAGGAGTCTCC+TGG - chr6_1:4370988-4371007 None:intergenic 50.0%
GTCAGAGCAAGAGACAGTGT+TGG - chr6_1:4371046-4371065 None:intergenic 50.0%
TCTGTGTCATCTGCCGTTGA+CGG + chr6_1:4371153-4371172 Msa0870090:CDS 50.0%
AGGGGTTGAAGAGAGGAGGA+CGG - chr6_1:4370923-4370942 None:intergenic 55.0%
AGGAGTCTCCTGGAAGAGAG+AGG - chr6_1:4370978-4370997 None:intergenic 55.0%
GGGACAGGAGAGTTCAAGAG+CGG - chr6_1:4371025-4371044 None:intergenic 55.0%
! GCAAGAGACAGTGTTGGGAC+AGG - chr6_1:4371040-4371059 None:intergenic 55.0%
GGTCACGTGTAGCTGTAGCA+AGG - chr6_1:4371071-4371090 None:intergenic 55.0%
CGGCAGATGACACAGAACCT+CGG - chr6_1:4371149-4371168 None:intergenic 55.0%
AGGGGTTGAAGAGAGGAGGA+CGG - chr6_1:4370923-4370942 None:intergenic 55.0%
AGGAGTCTCCTGGAAGAGAG+AGG - chr6_1:4370978-4370997 None:intergenic 55.0%
GGGACAGGAGAGTTCAAGAG+CGG - chr6_1:4371025-4371044 None:intergenic 55.0%
! GCAAGAGACAGTGTTGGGAC+AGG - chr6_1:4371040-4371059 None:intergenic 55.0%
GGTCACGTGTAGCTGTAGCA+AGG - chr6_1:4371071-4371090 None:intergenic 55.0%
CGGCAGATGACACAGAACCT+CGG - chr6_1:4371149-4371168 None:intergenic 55.0%
GAGGAAGAGACGGAGAGTGG+CGG - chr6_1:4370866-4370885 None:intergenic 60.0%
GTGGAGGAAGAGACGGAGAG+TGG - chr6_1:4370869-4370888 None:intergenic 60.0%
GGCAGTCGTGGAGGAAGAGA+CGG - chr6_1:4370876-4370895 None:intergenic 60.0%
CACGACTGCCTCCTCCCTAA+CGG + chr6_1:4370886-4370905 Msa0870090:CDS 60.0%
GGTTGAAGAGAGGAGGACGG+AGG - chr6_1:4370920-4370939 None:intergenic 60.0%
GAGGAAGAGACGGAGAGTGG+CGG - chr6_1:4370866-4370885 None:intergenic 60.0%
GTGGAGGAAGAGACGGAGAG+TGG - chr6_1:4370869-4370888 None:intergenic 60.0%
GGCAGTCGTGGAGGAAGAGA+CGG - chr6_1:4370876-4370895 None:intergenic 60.0%
CACGACTGCCTCCTCCCTAA+CGG + chr6_1:4370886-4370905 Msa0870090:CDS 60.0%
GGTTGAAGAGAGGAGGACGG+AGG - chr6_1:4370920-4370939 None:intergenic 60.0%
GAAGAGACGGAGAGTGGCGG+CGG - chr6_1:4370863-4370882 None:intergenic 65.0%
TAGGGAGGAGGCAGTCGTGG+AGG - chr6_1:4370885-4370904 None:intergenic 65.0%
CGTTAGGGAGGAGGCAGTCG+TGG - chr6_1:4370888-4370907 None:intergenic 65.0%
GTTTACCTCGGCCGTCGCGA+CGG + chr6_1:4371123-4371142 Msa0870090:CDS 65.0%
GAAGAGACGGAGAGTGGCGG+CGG - chr6_1:4370863-4370882 None:intergenic 65.0%
TAGGGAGGAGGCAGTCGTGG+AGG - chr6_1:4370885-4370904 None:intergenic 65.0%
CGTTAGGGAGGAGGCAGTCG+TGG - chr6_1:4370888-4370907 None:intergenic 65.0%
GTTTACCTCGGCCGTCGCGA+CGG + chr6_1:4371123-4371142 Msa0870090:CDS 65.0%
CGGCGGCGGTGGTTGGAGAT+TGG - chr6_1:4370846-4370865 None:intergenic 70.0%
CGTCGCAGCCGTTAGGGAGG+AGG - chr6_1:4370897-4370916 None:intergenic 70.0%
! AGGCGTCGCAGCCGTTAGGG+AGG - chr6_1:4370900-4370919 None:intergenic 70.0%
!! CGGAGGCGTCGCAGCCGTTA+GGG - chr6_1:4370903-4370922 None:intergenic 70.0%
!! ACGGAGGCGTCGCAGCCGTT+AGG - chr6_1:4370904-4370923 None:intergenic 70.0%
CAGAACCTCGGCCGTCGCGA+CGG - chr6_1:4371137-4371156 None:intergenic 70.0%
CGGCGGCGGTGGTTGGAGAT+TGG - chr6_1:4370846-4370865 None:intergenic 70.0%
CGTCGCAGCCGTTAGGGAGG+AGG - chr6_1:4370897-4370916 None:intergenic 70.0%
! AGGCGTCGCAGCCGTTAGGG+AGG - chr6_1:4370900-4370919 None:intergenic 70.0%
!! CGGAGGCGTCGCAGCCGTTA+GGG - chr6_1:4370903-4370922 None:intergenic 70.0%
!! ACGGAGGCGTCGCAGCCGTT+AGG - chr6_1:4370904-4370923 None:intergenic 70.0%
CAGAACCTCGGCCGTCGCGA+CGG - chr6_1:4371137-4371156 None:intergenic 70.0%
AGAGTGGCGGCGGCGGTGGT+TGG - chr6_1:4370853-4370872 None:intergenic 75.0%
GAGACGGAGAGTGGCGGCGG+CGG - chr6_1:4370860-4370879 None:intergenic 75.0%
AGAGTGGCGGCGGCGGTGGT+TGG - chr6_1:4370853-4370872 None:intergenic 75.0%
GAGACGGAGAGTGGCGGCGG+CGG - chr6_1:4370860-4370879 None:intergenic 75.0%
! ACGGAGAGTGGCGGCGGCGG+TGG - chr6_1:4370857-4370876 None:intergenic 80.0%
! ACGGAGAGTGGCGGCGGCGG+TGG - chr6_1:4370857-4370876 None:intergenic 80.0%
! CTCGGCCGTCGCGACGGCCG+AGG - chr6_1:4371129-4371148 None:intergenic 85.0%
! CTCGGCCGTCGCGACGGCCG+AGG + chr6_1:4371129-4371148 Msa0870090:CDS 85.0%
! CTCGGCCGTCGCGACGGCCG+AGG - chr6_1:4371129-4371148 None:intergenic 85.0%
! CTCGGCCGTCGCGACGGCCG+AGG + chr6_1:4371129-4371148 Msa0870090:CDS 85.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 4370670 4371671 4370670 ID=Msa0870090;Name=Msa0870090
chr6_1 mRNA 4370670 4371671 4370670 ID=Msa0870090-mRNA-1;Parent=Msa0870090;Name=Msa0870090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|333
chr6_1 exon 4370670 4371671 4370670 ID=Msa0870090-mRNA-1:exon:1363;Parent=Msa0870090-mRNA-1
chr6_1 CDS 4370670 4371671 4370670 ID=Msa0870090-mRNA-1:cds;Parent=Msa0870090-mRNA-1
Gene Sequence

>Msa0870090

ATGGCAACAACAACAAAAACAACCTTAACCTCATCATTGTTGTCATTGTTCTTCTTCTTCAACATCATCATTAACCTTAACCTCTCCGAATCAAAACTAACCTTAGATTACTACAAACAAACATGTCCACAATTCGAACAAATCATTCAACAAACAGTTACCTCAAAACAGATCCAATCTCCAACCACCGCCGCCGCCACTCTCCGTCTCTTCCTCCACGACTGCCTCCTCCCTAACGGCTGCGACGCCTCCGTCCTCCTCTCTTCAACCCCTTTCAACAAAGCTGAACGTGACAACGACATCAACCTCTCTCTTCCAGGAGACTCCTTTGACCTCATCGTACGTATCAAAACCGCTCTTGAACTCTCCTGTCCCAACACTGTCTCTTGCTCTGACATCCTTGCTACAGCTACACGTGACCTTCTTATCATGCTTGGTGGTCCTCATTACAATGTTTACCTCGGCCGTCGCGACGGCCGAGGTTCTGTGTCATCTGCCGTTGACGGCTTTCTTCCAAAGCCGTCAATGACAATGACACAGATAGTTTCAATATTCGCGAAACGGGGTTTTACAGTTGAAGAAATGGTTGCTTTATCTGGTGCTCATACAGTTGGACTTTCACATTGTAGTGAAATTAGTGGAGATATTTACAACAATTCTTCTGGTTCTGGTTCAGGTTATAATCCAAGATTTGTTGAAGGGTTAAAGAAAGCTTGTGGTGATTATAAGAAGAATCCTACTTTGTCTGTTTTTAATGATATTATGACACCAAATAAGTTTGATAATGTTTATTTTCAGAATTTACCTAAAGGTTTAGGGGTTTTGAAATCAGATCATGGATTGTTTAGTGATCCTTCAACTAAGCCTTTTGTGGAAAGATTTGCTAAGGATCAAGATTATTTCTTTAAGGTTTTTGCTAGTTCAATGCAAAAGCTTAGTCTTTTGAATGTTCAAACTGGTAGGAAGGGTGAGATTAGAAGAAGATGTGATCAGGTTAATTGA
Protein sequence

>Msa0870090

MATTTKTTLTSSLLSLFFFFNIIINLNLSESKLTLDYYKQTCPQFEQIIQQTVTSKQIQSPTTAAATLRLFLHDCLLPNGCDASVLLSSTPFNKAERDNDINLSLPGDSFDLIVRIKTALELSCPNTVSCSDILATATRDLLIMLGGPHYNVYLGRRDGRGSVSSAVDGFLPKPSMTMTQIVSIFAKRGFTVEEMVALSGAHTVGLSHCSEISGDIYNNSSGSGSGYNPRFVEGLKKACGDYKKNPTLSVFNDIMTPNKFDNVYFQNLPKGLGVLKSDHGLFSDPSTKPFVERFAKDQDYFFKVFASSMQKLSLLNVQTGRKGEIRRRCDQVN*