Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975230 | XP_013468204.1 | 73.317 | 401 | 94 | 5 | 4 | 394 | 3 | 400 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975230 | A0A072VKT8 | 73.317 | 401 | 94 | 5 | 4 | 394 | 3 | 400 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044020 | Msa0975230 | 0.800090 | 1.696114e-48 | -8.615850e-47 |
| Msa0625890 | Msa0975230 | 0.800107 | 1.682911e-48 | -8.615850e-47 |
| Msa0652980 | Msa0975230 | 0.801460 | 8.911928e-49 | -8.615850e-47 |
| Msa0663680 | Msa0975230 | 0.805758 | 1.143433e-49 | -8.615850e-47 |
| Msa0706370 | Msa0975230 | 0.800996 | 1.108730e-48 | -8.615850e-47 |
| Msa0741900 | Msa0975230 | 0.813666 | 2.280436e-51 | -8.615850e-47 |
| Msa0810020 | Msa0975230 | 0.810281 | 1.245978e-50 | -8.615850e-47 |
| Msa0153420 | Msa0975230 | 0.804421 | 2.178056e-49 | -8.615850e-47 |
| Msa0235890 | Msa0975230 | 0.827771 | 1.301732e-54 | -8.615850e-47 |
| Msa0862100 | Msa0975230 | 0.814372 | 1.592875e-51 | -8.615850e-47 |
| Msa0885060 | Msa0975230 | 0.806007 | 1.013560e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975230 | MtrunA17_Chr1g0181301 | 73.317 | 401 | 94 | 5 | 4 | 394 | 3 | 400 | 0.0 | 589 |
| Msa0975230 | MtrunA17_Chr5g0415931 | 52.926 | 393 | 165 | 8 | 5 | 393 | 6 | 382 | 6.50e-142 | 409 |
| Msa0975230 | MtrunA17_Chr5g0415901 | 47.179 | 390 | 139 | 8 | 5 | 392 | 4 | 328 | 9.50e-116 | 340 |
| Msa0975230 | MtrunA17_Chr1g0208731 | 44.361 | 399 | 160 | 13 | 1 | 392 | 1 | 344 | 2.50e-86 | 265 |
| Msa0975230 | MtrunA17_Chr5g0437231 | 48.571 | 315 | 133 | 9 | 5 | 318 | 4 | 290 | 1.06e-82 | 254 |
| Msa0975230 | MtrunA17_Chr7g0247731 | 40.714 | 420 | 171 | 16 | 1 | 394 | 1 | 368 | 8.41e-75 | 237 |
| Msa0975230 | MtrunA17_Chr7g0247701 | 40.534 | 412 | 183 | 17 | 1 | 392 | 1 | 370 | 2.43e-74 | 236 |
| Msa0975230 | MtrunA17_Chr7g0247721 | 39.720 | 428 | 168 | 18 | 1 | 394 | 39 | 410 | 3.83e-71 | 228 |
| Msa0975230 | MtrunA17_Chr5g0437241 | 42.456 | 285 | 130 | 6 | 80 | 361 | 1 | 254 | 4.54e-62 | 200 |
| Msa0975230 | MtrunA17_Chr6g0459631 | 79.464 | 112 | 19 | 1 | 117 | 224 | 41 | 152 | 1.84e-53 | 176 |
| Msa0975230 | MtrunA17_Chr6g0459631 | 83.871 | 62 | 10 | 0 | 333 | 394 | 149 | 210 | 8.47e-32 | 119 |
| Msa0975230 | MtrunA17_Chr7g0246641 | 42.345 | 307 | 130 | 14 | 95 | 394 | 4 | 270 | 3.15e-49 | 167 |
| Msa0975230 | MtrunA17_Chr1g0151451 | 45.771 | 201 | 82 | 5 | 1 | 190 | 1 | 185 | 7.95e-45 | 154 |
| Msa0975230 | MtrunA17_Chr3g0143621 | 27.249 | 389 | 229 | 17 | 3 | 366 | 21 | 380 | 2.61e-24 | 103 |
| Msa0975230 | MtrunA17_Chr7g0246651 | 36.517 | 178 | 93 | 6 | 95 | 263 | 45 | 211 | 3.81e-23 | 96.7 |
| Msa0975230 | MtrunA17_Chr7g0246661 | 37.594 | 133 | 65 | 3 | 176 | 301 | 8 | 129 | 1.55e-15 | 73.2 |
| Msa0975230 | MtrunA17_Chr8g0371101 | 25.255 | 392 | 225 | 15 | 2 | 366 | 3 | 353 | 1.52e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCGGCTTCGTATTT+TGG | 0.208690 | 6_4:-8949486 | Msa0975230:CDS |
| CCACAAAGCCTCTTGTTATA+AGG | 0.239129 | 6_4:+8950188 | None:intergenic |
| AATGTTAAAGCTTGATAGTT+TGG | 0.243559 | 6_4:-8949547 | Msa0975230:CDS |
| TAAAAGCTGGACAAAAGTTT+TGG | 0.255927 | 6_4:-8949920 | Msa0975230:CDS |
| TATGTTGTAGTTGCAATTTA+TGG | 0.256703 | 6_4:-8949966 | Msa0975230:CDS |
| TAGGGTTATTATTGTAAGTT+TGG | 0.266002 | 6_4:+8950127 | None:intergenic |
| TGGCTTGTAAGGAAATTTAT+TGG | 0.269879 | 6_4:-8949681 | Msa0975230:CDS |
| TATCAGCAAATCCAACAATT+AGG | 0.279432 | 6_4:-8949998 | Msa0975230:CDS |
| TTCATATCAAATGGTCCATT+AGG | 0.289459 | 6_4:+8949396 | None:intergenic |
| TGTTATAAGGGACTGGTAAC+TGG | 0.334225 | 6_4:+8950201 | None:intergenic |
| CTAACTCTTCTATATATATC+TGG | 0.344601 | 6_4:+8950053 | None:intergenic |
| TCATATCAAATGGTCCATTA+GGG | 0.347171 | 6_4:+8949397 | None:intergenic |
| GTCAATGGAGGCAGTAGATT+GGG | 0.349372 | 6_4:-8950453 | None:intergenic |
| ATATATATCTGGCATGTAGA+TGG | 0.350445 | 6_4:+8950064 | None:intergenic |
| CGAAGTGTATAAGTTGGAAT+TGG | 0.356208 | 6_4:-8949595 | Msa0975230:CDS |
| AGAACAAAGAGATGTTTATA+TGG | 0.371045 | 6_4:-8950251 | Msa0975230:CDS |
| ATGTTAAAGCTTGATAGTTT+GGG | 0.382709 | 6_4:-8949546 | Msa0975230:CDS |
| CCTTATAACAAGAGGCTTTG+TGG | 0.396717 | 6_4:-8950188 | Msa0975230:CDS |
| TCCTAATGTTGTTTCACCAT+GGG | 0.397638 | 6_4:-8949757 | Msa0975230:CDS |
| AGGGAGACTTGTGGCTTGTA+AGG | 0.407147 | 6_4:-8949692 | Msa0975230:CDS |
| AGCTATTATTCCCACTGAAA+TGG | 0.414384 | 6_4:+8949282 | None:intergenic |
| TCAGCGTGGTATGCAAGAAT+TGG | 0.424757 | 6_4:-8950361 | Msa0975230:CDS |
| CACAAAGCCTCTTGTTATAA+GGG | 0.438632 | 6_4:+8950189 | None:intergenic |
| TTGTGGTTCAAGTCATGGTT+GGG | 0.440074 | 6_4:-8950171 | Msa0975230:CDS |
| TAATCGTGAGGCCTAATTGT+TGG | 0.445678 | 6_4:+8949987 | None:intergenic |
| TGTCAATGGAGGCAGTAGAT+TGG | 0.445882 | 6_4:-8950454 | None:intergenic |
| TTATGAATGTAACGTTCATA+AGG | 0.448018 | 6_4:-8950027 | Msa0975230:CDS |
| TGTCTTGCTTTCATAAAAGC+TGG | 0.450654 | 6_4:-8949933 | Msa0975230:CDS |
| GAACAAAGAGATGTTTATAT+GGG | 0.454874 | 6_4:-8950250 | Msa0975230:CDS |
| AAAATCTATAATGTAAAAGA+TGG | 0.455567 | 6_4:-8949375 | Msa0975230:CDS |
| GTTCACACGGATGCCACCTT+CGG | 0.463341 | 6_4:-8949319 | Msa0975230:CDS |
| AAGATTCGAAGTGTATAAGT+TGG | 0.476468 | 6_4:-8949601 | Msa0975230:CDS |
| TTTGTGGTTCAAGTCATGGT+TGG | 0.477178 | 6_4:-8950172 | Msa0975230:CDS |
| GCACCGGATCCTTACCCTAA+TGG | 0.478062 | 6_4:-8949411 | Msa0975230:CDS |
| CCCCATGGTGAAACAACATT+AGG | 0.481080 | 6_4:+8949756 | None:intergenic |
| AGGCTTTGTGGTTCAAGTCA+TGG | 0.485655 | 6_4:-8950176 | Msa0975230:CDS |
| AGCATTGCAATTTCGAACAT+TGG | 0.498979 | 6_4:-8949341 | Msa0975230:CDS |
| TCATCATCAGTGTCATCATC+GGG | 0.504068 | 6_4:+8949654 | None:intergenic |
| AAGGGACTGGTAACTGGAAG+TGG | 0.511976 | 6_4:+8950207 | None:intergenic |
| TTCATCATCAGTGTCATCAT+CGG | 0.513248 | 6_4:+8949653 | None:intergenic |
| GGCATGTAGATGGGTGGTAG+AGG | 0.516014 | 6_4:+8950074 | None:intergenic |
| TTGTCAACAATCAAACTAAG+AGG | 0.516158 | 6_4:+8950413 | None:intergenic |
| AGCCTCTTGTTATAAGGGAC+TGG | 0.519764 | 6_4:+8950194 | None:intergenic |
| TAATGTTGTTTCACCATGGG+GGG | 0.533333 | 6_4:-8949754 | Msa0975230:CDS |
| CACGGATGCCACCTTCGGTG+TGG | 0.534966 | 6_4:-8949314 | Msa0975230:CDS |
| TCAAATGGTCCATTAGGGTA+AGG | 0.543154 | 6_4:+8949402 | None:intergenic |
| TAGTCTATGCCGCGGGACGA+TGG | 0.544109 | 6_4:-8949842 | Msa0975230:CDS |
| TTCCTAATGTTGTTTCACCA+TGG | 0.544368 | 6_4:-8949758 | Msa0975230:CDS |
| GGGTTCTTCCGCCATTTCAG+TGG | 0.545118 | 6_4:-8949293 | Msa0975230:CDS |
| GGTTCTTCCGCCATTTCAGT+GGG | 0.545364 | 6_4:-8949292 | Msa0975230:CDS |
| TACCAGTCCCTTATAACAAG+AGG | 0.549099 | 6_4:-8950196 | Msa0975230:CDS |
| ACGGATGCCACCTTCGGTGT+GGG | 0.551054 | 6_4:-8949313 | Msa0975230:CDS |
| TATATATCTGGCATGTAGAT+GGG | 0.560379 | 6_4:+8950065 | None:intergenic |
| GTAGATGGGTGGTAGAGGGA+TGG | 0.563925 | 6_4:+8950079 | None:intergenic |
| TTTGTGGGAATCATTAGCAT+AGG | 0.565295 | 6_4:+8950284 | None:intergenic |
| TCATGGTTGGGTAGCAAAGG+TGG | 0.565480 | 6_4:-8950159 | Msa0975230:CDS |
| TGATTATTTCGAAGAAGCAC+CGG | 0.570964 | 6_4:-8949427 | Msa0975230:CDS |
| GGAAGAACCCACACCGAAGG+TGG | 0.579383 | 6_4:+8949306 | None:intergenic |
| GGTCCATTAGGGTAAGGATC+CGG | 0.584997 | 6_4:+8949408 | None:intergenic |
| TAGTGATTCTGTATCTATGT+CGG | 0.590343 | 6_4:-8949499 | Msa0975230:CDS |
| AAGTCATGGTTGGGTAGCAA+AGG | 0.591114 | 6_4:-8950162 | Msa0975230:CDS |
| GATAGTAACTTGTCTAGTAG+TGG | 0.593839 | 6_4:-8949630 | Msa0975230:CDS |
| CCTAATGTTGTTTCACCATG+GGG | 0.597547 | 6_4:-8949756 | Msa0975230:CDS |
| GCATGTAGATGGGTGGTAGA+GGG | 0.597842 | 6_4:+8950075 | None:intergenic |
| ATTTCGAACATTGGTTCACA+CGG | 0.602276 | 6_4:-8949332 | Msa0975230:CDS |
| TCAATGGAGGCAGTAGATTG+GGG | 0.615269 | 6_4:-8950452 | Msa0975230:CDS |
| AAAGGGTTAGTCTATGCCGC+GGG | 0.616298 | 6_4:-8949849 | Msa0975230:CDS |
| GGCGGAAGAACCCACACCGA+AGG | 0.621085 | 6_4:+8949303 | None:intergenic |
| TGCTTCTTCGAAATAATCAT+CGG | 0.622108 | 6_4:+8949431 | None:intergenic |
| TAAAGGGTTAGTCTATGCCG+CGG | 0.636049 | 6_4:-8949850 | Msa0975230:CDS |
| AATGTTATTCCATCGTCCCG+CGG | 0.636658 | 6_4:+8949833 | None:intergenic |
| TATTATTCCCACTGAAATGG+CGG | 0.639125 | 6_4:+8949285 | None:intergenic |
| AATCATTGGAGGGAGACTTG+TGG | 0.640759 | 6_4:-8949701 | Msa0975230:CDS |
| TTGGAATTGGATCTTCAAAG+TGG | 0.643699 | 6_4:-8949582 | Msa0975230:CDS |
| CTAATGTTGTTTCACCATGG+GGG | 0.657132 | 6_4:-8949755 | Msa0975230:CDS |
| CGATCACATTTATTTCAGCG+TGG | 0.681214 | 6_4:-8950375 | Msa0975230:CDS |
| ATATCTGGCATGTAGATGGG+TGG | 0.682216 | 6_4:+8950068 | None:intergenic |
| GCAACTACAACATAATCGTG+AGG | 0.708433 | 6_4:+8949975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTGATGTTATATTTTATAA+AGG | - | chr6_4:8949869-8949888 | Msa0975230:CDS | 15.0% |
| !!! | GTGATGTTATATTTTATAAA+GGG | - | chr6_4:8949870-8949889 | Msa0975230:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | + | chr6_4:8950352-8950371 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | - | chr6_4:8950361-8950380 | Msa0975230:CDS | 15.0% |
| !!! | AGTGATGTTATATTTTATAA+AGG | - | chr6_4:8949869-8949888 | Msa0975230:CDS | 15.0% |
| !!! | GTGATGTTATATTTTATAAA+GGG | - | chr6_4:8949870-8949889 | Msa0975230:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | + | chr6_4:8950352-8950371 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | - | chr6_4:8950361-8950380 | Msa0975230:CDS | 15.0% |
| !!! | GTAATACATTGTTTTTGATT+TGG | + | chr6_4:8949433-8949452 | None:intergenic | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | - | chr6_4:8950267-8950286 | Msa0975230:CDS | 20.0% |
| !!! | GTAATACATTGTTTTTGATT+TGG | + | chr6_4:8949433-8949452 | None:intergenic | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | - | chr6_4:8950267-8950286 | Msa0975230:CDS | 20.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | - | chr6_4:8949485-8949504 | Msa0975230:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | - | chr6_4:8949486-8949505 | Msa0975230:CDS | 25.0% |
| ! | TAGGGTTATTATTGTAAGTT+TGG | + | chr6_4:8949612-8949631 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | + | chr6_4:8949630-8949649 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | + | chr6_4:8949641-8949660 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | + | chr6_4:8949686-8949705 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | - | chr6_4:8949709-8949728 | Msa0975230:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | - | chr6_4:8949770-8949789 | Msa0975230:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | - | chr6_4:8949931-8949950 | Msa0975230:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | - | chr6_4:8950021-8950040 | Msa0975230:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | - | chr6_4:8950024-8950043 | Msa0975230:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | - | chr6_4:8950025-8950044 | Msa0975230:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | - | chr6_4:8950189-8950208 | Msa0975230:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | - | chr6_4:8950190-8950209 | Msa0975230:CDS | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | - | chr6_4:8949485-8949504 | Msa0975230:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | - | chr6_4:8949486-8949505 | Msa0975230:CDS | 25.0% |
| ! | TAGGGTTATTATTGTAAGTT+TGG | + | chr6_4:8949612-8949631 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | + | chr6_4:8949630-8949649 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | + | chr6_4:8949641-8949660 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | + | chr6_4:8949686-8949705 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | - | chr6_4:8949709-8949728 | Msa0975230:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | - | chr6_4:8949770-8949789 | Msa0975230:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | - | chr6_4:8949931-8949950 | Msa0975230:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | - | chr6_4:8950021-8950040 | Msa0975230:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | - | chr6_4:8950024-8950043 | Msa0975230:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | - | chr6_4:8950025-8950044 | Msa0975230:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | - | chr6_4:8950189-8950208 | Msa0975230:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | - | chr6_4:8950190-8950209 | Msa0975230:CDS | 25.0% |
| TTGTCAACAATCAAACTAAG+AGG | + | chr6_4:8949326-8949345 | None:intergenic | 30.0% | |
| TAATGATTCCCACAAAAAGA+AGG | - | chr6_4:8949459-8949478 | Msa0975230:CDS | 30.0% | |
| !! | GATTTTTGAAGGGATTTAGT+AGG | + | chr6_4:8949631-8949650 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | + | chr6_4:8949642-8949661 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | + | chr6_4:8949674-8949693 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | + | chr6_4:8949675-8949694 | None:intergenic | 30.0% | |
| TATCAGCAAATCCAACAATT+AGG | - | chr6_4:8949738-8949757 | Msa0975230:CDS | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | - | chr6_4:8949816-8949835 | Msa0975230:CDS | 30.0% |
| ! | TGGCTTGTAAGGAAATTTAT+TGG | - | chr6_4:8950055-8950074 | Msa0975230:CDS | 30.0% |
| AAGATTCGAAGTGTATAAGT+TGG | - | chr6_4:8950135-8950154 | Msa0975230:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | chr6_4:8950211-8950230 | Msa0975230:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | - | chr6_4:8950237-8950256 | Msa0975230:CDS | 30.0% | |
| TGCTTCTTCGAAATAATCAT+CGG | + | chr6_4:8950308-8950327 | None:intergenic | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | + | chr6_4:8950342-8950361 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | + | chr6_4:8950343-8950362 | None:intergenic | 30.0% | |
| TTGTCAACAATCAAACTAAG+AGG | + | chr6_4:8949326-8949345 | None:intergenic | 30.0% | |
| TAATGATTCCCACAAAAAGA+AGG | - | chr6_4:8949459-8949478 | Msa0975230:CDS | 30.0% | |
| !! | GATTTTTGAAGGGATTTAGT+AGG | + | chr6_4:8949631-8949650 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | + | chr6_4:8949642-8949661 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | + | chr6_4:8949674-8949693 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | + | chr6_4:8949675-8949694 | None:intergenic | 30.0% | |
| TATCAGCAAATCCAACAATT+AGG | - | chr6_4:8949738-8949757 | Msa0975230:CDS | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | - | chr6_4:8949816-8949835 | Msa0975230:CDS | 30.0% |
| ! | TGGCTTGTAAGGAAATTTAT+TGG | - | chr6_4:8950055-8950074 | Msa0975230:CDS | 30.0% |
| AAGATTCGAAGTGTATAAGT+TGG | - | chr6_4:8950135-8950154 | Msa0975230:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | chr6_4:8950211-8950230 | Msa0975230:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | - | chr6_4:8950237-8950256 | Msa0975230:CDS | 30.0% | |
| TGCTTCTTCGAAATAATCAT+CGG | + | chr6_4:8950308-8950327 | None:intergenic | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | + | chr6_4:8950342-8950361 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | + | chr6_4:8950343-8950362 | None:intergenic | 30.0% | |
| TTTGTGGGAATCATTAGCAT+AGG | + | chr6_4:8949455-8949474 | None:intergenic | 35.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | + | chr6_4:8949470-8949489 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | + | chr6_4:8949471-8949490 | None:intergenic | 35.0% |
| ! | CTGGAAGTGGTAAATTTTGT+TGG | + | chr6_4:8949519-8949538 | None:intergenic | 35.0% |
| ! | CACAAAGCCTCTTGTTATAA+GGG | + | chr6_4:8949550-8949569 | None:intergenic | 35.0% |
| TGTCTTGCTTTCATAAAAGC+TGG | - | chr6_4:8949803-8949822 | Msa0975230:CDS | 35.0% | |
| !! | TTCCTAATGTTGTTTCACCA+TGG | - | chr6_4:8949978-8949997 | Msa0975230:CDS | 35.0% |
| !! | TCCTAATGTTGTTTCACCAT+GGG | - | chr6_4:8949979-8949998 | Msa0975230:CDS | 35.0% |
| TTCATCATCAGTGTCATCAT+CGG | + | chr6_4:8950086-8950105 | None:intergenic | 35.0% | |
| ! | GATAGTAACTTGTCTAGTAG+TGG | - | chr6_4:8950106-8950125 | Msa0975230:CDS | 35.0% |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | - | chr6_4:8950141-8950160 | Msa0975230:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | - | chr6_4:8950154-8950173 | Msa0975230:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | chr6_4:8950210-8950229 | Msa0975230:CDS | 35.0% |
| ! | TGATTATTTCGAAGAAGCAC+CGG | - | chr6_4:8950309-8950328 | Msa0975230:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | - | chr6_4:8950395-8950414 | Msa0975230:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | - | chr6_4:8950404-8950423 | Msa0975230:CDS | 35.0% |
| TTTGTGGGAATCATTAGCAT+AGG | + | chr6_4:8949455-8949474 | None:intergenic | 35.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | + | chr6_4:8949470-8949489 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | + | chr6_4:8949471-8949490 | None:intergenic | 35.0% |
| ! | CTGGAAGTGGTAAATTTTGT+TGG | + | chr6_4:8949519-8949538 | None:intergenic | 35.0% |
| ! | CACAAAGCCTCTTGTTATAA+GGG | + | chr6_4:8949550-8949569 | None:intergenic | 35.0% |
| TGTCTTGCTTTCATAAAAGC+TGG | - | chr6_4:8949803-8949822 | Msa0975230:CDS | 35.0% | |
| !! | TTCCTAATGTTGTTTCACCA+TGG | - | chr6_4:8949978-8949997 | Msa0975230:CDS | 35.0% |
| !! | TCCTAATGTTGTTTCACCAT+GGG | - | chr6_4:8949979-8949998 | Msa0975230:CDS | 35.0% |
| TTCATCATCAGTGTCATCAT+CGG | + | chr6_4:8950086-8950105 | None:intergenic | 35.0% | |
| ! | GATAGTAACTTGTCTAGTAG+TGG | - | chr6_4:8950106-8950125 | Msa0975230:CDS | 35.0% |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | - | chr6_4:8950141-8950160 | Msa0975230:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | - | chr6_4:8950154-8950173 | Msa0975230:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | chr6_4:8950210-8950229 | Msa0975230:CDS | 35.0% |
| ! | TGATTATTTCGAAGAAGCAC+CGG | - | chr6_4:8950309-8950328 | Msa0975230:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | - | chr6_4:8950395-8950414 | Msa0975230:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | - | chr6_4:8950404-8950423 | Msa0975230:CDS | 35.0% |
| CGATCACATTTATTTCAGCG+TGG | - | chr6_4:8949361-8949380 | Msa0975230:CDS | 40.0% | |
| ! | TGTTATAAGGGACTGGTAAC+TGG | + | chr6_4:8949538-8949557 | None:intergenic | 40.0% |
| TACCAGTCCCTTATAACAAG+AGG | - | chr6_4:8949540-8949559 | Msa0975230:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | + | chr6_4:8949551-8949570 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | - | chr6_4:8949548-8949567 | Msa0975230:CDS | 40.0% | |
| TTTGTGGTTCAAGTCATGGT+TGG | - | chr6_4:8949564-8949583 | Msa0975230:CDS | 40.0% | |
| TTGTGGTTCAAGTCATGGTT+GGG | - | chr6_4:8949565-8949584 | Msa0975230:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+TGG | + | chr6_4:8949752-8949771 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | + | chr6_4:8949764-8949783 | None:intergenic | 40.0% | |
| !! | CCTAATGTTGTTTCACCATG+GGG | - | chr6_4:8949980-8949999 | Msa0975230:CDS | 40.0% |
| !! | CTAATGTTGTTTCACCATGG+GGG | - | chr6_4:8949981-8950000 | Msa0975230:CDS | 40.0% |
| !! | TAATGTTGTTTCACCATGGG+GGG | - | chr6_4:8949982-8950001 | Msa0975230:CDS | 40.0% |
| TCATCATCAGTGTCATCATC+GGG | + | chr6_4:8950085-8950104 | None:intergenic | 40.0% | |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | - | chr6_4:8950250-8950269 | Msa0975230:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | + | chr6_4:8950337-8950356 | None:intergenic | 40.0% | |
| CGATCACATTTATTTCAGCG+TGG | - | chr6_4:8949361-8949380 | Msa0975230:CDS | 40.0% | |
| ! | TGTTATAAGGGACTGGTAAC+TGG | + | chr6_4:8949538-8949557 | None:intergenic | 40.0% |
| TACCAGTCCCTTATAACAAG+AGG | - | chr6_4:8949540-8949559 | Msa0975230:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | + | chr6_4:8949551-8949570 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | - | chr6_4:8949548-8949567 | Msa0975230:CDS | 40.0% | |
| TTTGTGGTTCAAGTCATGGT+TGG | - | chr6_4:8949564-8949583 | Msa0975230:CDS | 40.0% | |
| TTGTGGTTCAAGTCATGGTT+GGG | - | chr6_4:8949565-8949584 | Msa0975230:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+TGG | + | chr6_4:8949752-8949771 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | + | chr6_4:8949764-8949783 | None:intergenic | 40.0% | |
| !! | CCTAATGTTGTTTCACCATG+GGG | - | chr6_4:8949980-8949999 | Msa0975230:CDS | 40.0% |
| !! | CTAATGTTGTTTCACCATGG+GGG | - | chr6_4:8949981-8950000 | Msa0975230:CDS | 40.0% |
| !! | TAATGTTGTTTCACCATGGG+GGG | - | chr6_4:8949982-8950001 | Msa0975230:CDS | 40.0% |
| TCATCATCAGTGTCATCATC+GGG | + | chr6_4:8950085-8950104 | None:intergenic | 40.0% | |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | - | chr6_4:8950250-8950269 | Msa0975230:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | + | chr6_4:8950337-8950356 | None:intergenic | 40.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | - | chr6_4:8949375-8949394 | Msa0975230:CDS | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAC+TGG | + | chr6_4:8949545-8949564 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | - | chr6_4:8949560-8949579 | Msa0975230:CDS | 45.0% |
| AAGTCATGGTTGGGTAGCAA+AGG | - | chr6_4:8949574-8949593 | Msa0975230:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | + | chr6_4:8949671-8949690 | None:intergenic | 45.0% | |
| !! | TAAAGGGTTAGTCTATGCCG+CGG | - | chr6_4:8949886-8949905 | Msa0975230:CDS | 45.0% |
| AATGTTATTCCATCGTCCCG+CGG | + | chr6_4:8949906-8949925 | None:intergenic | 45.0% | |
| CCCCATGGTGAAACAACATT+AGG | + | chr6_4:8949983-8950002 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | - | chr6_4:8950035-8950054 | Msa0975230:CDS | 45.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | - | chr6_4:8949375-8949394 | Msa0975230:CDS | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAC+TGG | + | chr6_4:8949545-8949564 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | - | chr6_4:8949560-8949579 | Msa0975230:CDS | 45.0% |
| AAGTCATGGTTGGGTAGCAA+AGG | - | chr6_4:8949574-8949593 | Msa0975230:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | + | chr6_4:8949671-8949690 | None:intergenic | 45.0% | |
| !! | TAAAGGGTTAGTCTATGCCG+CGG | - | chr6_4:8949886-8949905 | Msa0975230:CDS | 45.0% |
| AATGTTATTCCATCGTCCCG+CGG | + | chr6_4:8949906-8949925 | None:intergenic | 45.0% | |
| CCCCATGGTGAAACAACATT+AGG | + | chr6_4:8949983-8950002 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | - | chr6_4:8950035-8950054 | Msa0975230:CDS | 45.0% | |
| ! | AAGGGACTGGTAACTGGAAG+TGG | + | chr6_4:8949532-8949551 | None:intergenic | 50.0% |
| TCATGGTTGGGTAGCAAAGG+TGG | - | chr6_4:8949577-8949596 | Msa0975230:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | + | chr6_4:8949664-8949683 | None:intergenic | 50.0% | |
| !! | AAAGGGTTAGTCTATGCCGC+GGG | - | chr6_4:8949887-8949906 | Msa0975230:CDS | 50.0% |
| TGAGCAAAATCATCCCCCCA+TGG | + | chr6_4:8949998-8950017 | None:intergenic | 50.0% | |
| ! | AGGGAGACTTGTGGCTTGTA+AGG | - | chr6_4:8950044-8950063 | Msa0975230:CDS | 50.0% |
| GGTCCATTAGGGTAAGGATC+CGG | + | chr6_4:8950331-8950350 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | - | chr6_4:8950444-8950463 | Msa0975230:CDS | 50.0% | |
| ! | AAGGGACTGGTAACTGGAAG+TGG | + | chr6_4:8949532-8949551 | None:intergenic | 50.0% |
| TCATGGTTGGGTAGCAAAGG+TGG | - | chr6_4:8949577-8949596 | Msa0975230:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | + | chr6_4:8949664-8949683 | None:intergenic | 50.0% | |
| !! | AAAGGGTTAGTCTATGCCGC+GGG | - | chr6_4:8949887-8949906 | Msa0975230:CDS | 50.0% |
| TGAGCAAAATCATCCCCCCA+TGG | + | chr6_4:8949998-8950017 | None:intergenic | 50.0% | |
| ! | AGGGAGACTTGTGGCTTGTA+AGG | - | chr6_4:8950044-8950063 | Msa0975230:CDS | 50.0% |
| GGTCCATTAGGGTAAGGATC+CGG | + | chr6_4:8950331-8950350 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | - | chr6_4:8950444-8950463 | Msa0975230:CDS | 50.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | + | chr6_4:8949660-8949679 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | + | chr6_4:8949665-8949684 | None:intergenic | 55.0% | |
| GCACCGGATCCTTACCCTAA+TGG | - | chr6_4:8950325-8950344 | Msa0975230:CDS | 55.0% | |
| GTTCACACGGATGCCACCTT+CGG | - | chr6_4:8950417-8950436 | Msa0975230:CDS | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | - | chr6_4:8950443-8950462 | Msa0975230:CDS | 55.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | + | chr6_4:8949660-8949679 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | + | chr6_4:8949665-8949684 | None:intergenic | 55.0% | |
| GCACCGGATCCTTACCCTAA+TGG | - | chr6_4:8950325-8950344 | Msa0975230:CDS | 55.0% | |
| GTTCACACGGATGCCACCTT+CGG | - | chr6_4:8950417-8950436 | Msa0975230:CDS | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | - | chr6_4:8950443-8950462 | Msa0975230:CDS | 55.0% | |
| TAGTCTATGCCGCGGGACGA+TGG | - | chr6_4:8949894-8949913 | Msa0975230:CDS | 60.0% | |
| ! | ACGGATGCCACCTTCGGTGT+GGG | - | chr6_4:8950423-8950442 | Msa0975230:CDS | 60.0% |
| GGAAGAACCCACACCGAAGG+TGG | + | chr6_4:8950433-8950452 | None:intergenic | 60.0% | |
| TAGTCTATGCCGCGGGACGA+TGG | - | chr6_4:8949894-8949913 | Msa0975230:CDS | 60.0% | |
| ! | ACGGATGCCACCTTCGGTGT+GGG | - | chr6_4:8950423-8950442 | Msa0975230:CDS | 60.0% |
| GGAAGAACCCACACCGAAGG+TGG | + | chr6_4:8950433-8950452 | None:intergenic | 60.0% | |
| CACGGATGCCACCTTCGGTG+TGG | - | chr6_4:8950422-8950441 | Msa0975230:CDS | 65.0% | |
| GGCGGAAGAACCCACACCGA+AGG | + | chr6_4:8950436-8950455 | None:intergenic | 65.0% | |
| CACGGATGCCACCTTCGGTG+TGG | - | chr6_4:8950422-8950441 | Msa0975230:CDS | 65.0% | |
| GGCGGAAGAACCCACACCGA+AGG | + | chr6_4:8950436-8950455 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 8949287 | 8950471 | 8949287 | ID=Msa0975230;Name=Msa0975230 |
| chr6_4 | mRNA | 8949287 | 8950471 | 8949287 | ID=Msa0975230-mRNA-1;Parent=Msa0975230;Name=Msa0975230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|394 |
| chr6_4 | exon | 8949287 | 8950471 | 8949287 | ID=Msa0975230-mRNA-1:exon:3192;Parent=Msa0975230-mRNA-1 |
| chr6_4 | CDS | 8949287 | 8950471 | 8949287 | ID=Msa0975230-mRNA-1:cds;Parent=Msa0975230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
