AlfalfaGEDB | Msa0625890

M. sativa cultivar zhongmu-4 / Msa0625890

KEGG: K00648
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF08545.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625890	XP_003604258.1	95.029	342	17	0	18	359	35	376	0.0	664

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625890	sp\|P49243\|FABH_ARATH	70.085	351	99	3	12	358	55	403	0.0	515

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0625890	0.800909	1.155036e-48	-8.615850e-47
Msa0005050	Msa0625890	0.831545	1.571134e-55	-8.615850e-47
Msa0012440	Msa0625890	0.804159	2.469259e-49	-8.615850e-47
Msa0022640	Msa0625890	0.802341	5.875010e-49	-8.615850e-47
Msa0036430	Msa0625890	0.838934	2.141200e-57	-8.615850e-47
Msa0043210	Msa0625890	0.807074	6.036516e-50	-8.615850e-47
Msa0044020	Msa0625890	0.811825	5.767408e-51	-8.615850e-47
Msa0048200	Msa0625890	0.801733	7.834836e-49	-8.615850e-47
Msa0050040	Msa0625890	0.834103	3.637261e-56	-8.615850e-47
Msa0053110	Msa0625890	0.835417	1.698383e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625890	MtrunA17_Chr4g0001461	83.033	389	16	1	21	359	4	392	0.0	635
Msa0625890	MtrunA17_Chr2g0333881	73.021	341	92	0	19	359	56	396	0.0	524
Msa0625890	MtrunA17_Chr5g0396921	66.019	206	51	1	154	359	23	209	2.77e-91	272

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625890	AT1G62640.2	70.085	351	99	3	12	358	55	403	0.0	515
Msa0625890	AT1G62640.1	70.085	351	99	3	12	358	55	403	0.0	515

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Find 72 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTACAGCTGCATGTAG+TGG	0.532984	4_3:-5211410	Msa0625890:CDS
AACCAGTCAATGCTGGATGC+AGG	0.515256	4_3:+5210484	None:intergenic
AACTCGACGTTTACGAATCC+CGG	0.530634	4_3:+5212573	None:intergenic
AAGATTAGGTCAACATCACC+TGG	0.602574	4_3:+5211763	None:intergenic
AAGTGCAGCTTCCATTCCAT+TGG	0.525636	4_3:-5210200	Msa0625890:CDS
AATGCAGCATATAAAGAAGA+AGG	0.507598	4_3:-5210664	Msa0625890:CDS
AATGCATCAGACTCAATTAA+GGG	0.492850	4_3:-5210634	Msa0625890:CDS
AATGGATAAGTGTTCGCACC+GGG	0.577062	4_3:-5212591	Msa0625890:CDS
AATTGAGTCAGCACTTCAAA+AGG	0.505835	4_3:-5210515	Msa0625890:CDS
ACTGATTCATCTAAAGCCAA+TGG	0.554412	4_3:+5210184	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGGGAAGAAAAAAAATACTT+AGG	+	chr4_3:5210016-5210035	None:intergenic	30.0%
CCTCTTCAAAATATGATGTT+TGG	-	chr4_3:5210069-5210088	Msa0625890:three_prime_UTR	30.0%
AAACAAGTCTTGAACTCATT+TGG	-	chr4_3:5210218-5210237	Msa0625890:CDS	30.0%
GTCTTCTGAATTGTGTAAAA+TGG	-	chr4_3:5210294-5210313	Msa0625890:intron	30.0%
GTTAAATTGATCACTCATTG+TGG	-	chr4_3:5210643-5210662	Msa0625890:CDS	30.0%
ACTTTACTATGAGTCTCTAT+GGG	-	chr4_3:5210921-5210940	Msa0625890:CDS	30.0%
GAGATAAAAATTCGTCTCAT+AGG	-	chr4_3:5211075-5211094	Msa0625890:intron	30.0%
TTGTTATAAGATGTAAGGTG+TGG	-	chr4_3:5211182-5211201	Msa0625890:CDS	30.0%
TGTTATAAGATGTAAGGTGT+GGG	-	chr4_3:5211183-5211202	Msa0625890:CDS	30.0%
CAATGGTGAGAGTTATTTAT+AGG	-	chr4_3:5211772-5211791	Msa0625890:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	5209959	5214982	5209959	ID=Msa0625890;Name=Msa0625890
chr4_3	mRNA	5209959	5214982	5209959	ID=Msa0625890-mRNA-1;Parent=Msa0625890;Name=Msa0625890-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.85\|0.75\|0.87\|1\|1\|8\|131\|359
chr4_3	exon	5209959	5210311	5209959	ID=Msa0625890-mRNA-1:exon:1473;Parent=Msa0625890-mRNA-1
chr4_3	exon	5210471	5210693	5210471	ID=Msa0625890-mRNA-1:exon:1472;Parent=Msa0625890-mRNA-1
chr4_3	exon	5210912	5210976	5210912	ID=Msa0625890-mRNA-1:exon:1471;Parent=Msa0625890-mRNA-1
chr4_3	exon	5211167	5211285	5211167	ID=Msa0625890-mRNA-1:exon:1470;Parent=Msa0625890-mRNA-1
chr4_3	exon	5211369	5211474	5211369	ID=Msa0625890-mRNA-1:exon:1469;Parent=Msa0625890-mRNA-1
chr4_3	exon	5211717	5211853	5211717	ID=Msa0625890-mRNA-1:exon:1468;Parent=Msa0625890-mRNA-1
chr4_3	exon	5212566	5212714	5212566	ID=Msa0625890-mRNA-1:exon:1467;Parent=Msa0625890-mRNA-1
chr4_3	exon	5214924	5214982	5214924	ID=Msa0625890-mRNA-1:exon:1466;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5214924	5214982	5214924	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5212566	5212714	5212566	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5211717	5211853	5211717	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5211369	5211474	5211369	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5211167	5211285	5211167	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5210912	5210976	5210912	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5210471	5210693	5210471	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	CDS	5210090	5210311	5210090	ID=Msa0625890-mRNA-1:cds;Parent=Msa0625890-mRNA-1
chr4_3	three_prime_UTR	5209959	5210089	5209959	ID=Msa0625890-mRNA-1:three_prime_utr;Parent=Msa0625890-mRNA-1

Gene Sequence

>Msa0625890

ATGAGAAGCTTCAACTTCCGCATCCTAGGTCGAACAACACCTTCTCGGAACCTTCCTAAACTTGTTAGTCAAGGCTGCAAGCTGGTAGGATGTGGTTCAGCTGTGCCAACTCTTGAGATTACTAATGACGAGCTTGCAAAAATAGTTGATACTTCTGATGAATGGATAAGTGTTCGCACCGGGATTCGTAAACGTCGAGTTCTTTCAGGTGGAGAAAACTTGACCACTTTATCAGTAGAGGCAGCAAGGAAAGCTCTTGAGATGGCAAAGGTTGATCCAGGTGATGTTGACCTAATCTTGGTGTGTTCATCTACTTCAGATGATCTTTTTGGCACTGGTCCTCAGATTTCAAAACAGCTTGGCTGCAAAAAAAATCCAGCAGCTTATAACATTACAGCTGCATGTAGTGGATTTATCTTTGGTTTAATATCAGCTGCTAGTCACATTAGGGGAGCAGCATTTCAAAATGTTCTTGTAATCGGAACTGATGCTCTTTCGAGATATATCGATTGGACCGACAGAAGTTCATGTATTCTGTTTGGAGATGCTGCTGGTGCTGTTCTAGTACAGGCGTGCAACTACGAGGAAGATTGTTTATTTAGTTTTGATTTGAATAGTGATGGTGATGGATATATGCATCTGAATGCAGCATATAAAGAAGAAGGGGCTAATAATGCATCAGACTCAATTAAGGGTGAGTTGAACTTTCCTCCAAAGAAGTATTCATATTCATGCATACATATGAATGGCAAAGTAGTGTTTAAATTTGCTATACAGAGTGTGCCAAAGTCAATTGAGTCAGCACTTCAAAAGGCTGGTCTACCTGCATCCAGCATTGACTGGTTACTTCTCCATCAGGCAAACCAAAGAATTATTGATGTAGTGGCAAACAAATTAGAATTCCCTCCAGAAAAAGTGATATCAAATGTGGCTGATTATGGTAATACAAGTGCAGCTTCCATTCCATTGGCTTTAGATGAATCAGTTAGAAGTGGAAAGATTAAGGAAGGACAAATTATTGCTGCTTCTGGCTTTGGTGCTGGTCTTACTTGGGGATCAGCTATTTTTCAATGGGGATAA

Protein sequence

>Msa0625890

MRSFNFRILGRTTPSRNLPKLVSQGCKLVGCGSAVPTLEITNDELAKIVDTSDEWISVRTGIRKRRVLSGGENLTTLSVEAARKALEMAKVDPGDVDLILVCSSTSDDLFGTGPQISKQLGCKKNPAAYNITAACSGFIFGLISAASHIRGAAFQNVLVIGTDALSRYIDWTDRSSCILFGDAAGAVLVQACNYEEDCLFSFDLNSDGDGYMHLNAAYKEEGANNASDSIKGELNFPPKKYSYSCIHMNGKVVFKFAIQSVPKSIESALQKAGLPASSIDWLLLHQANQRIIDVVANKLEFPPEKVISNVADYGNTSAASIPLALDESVRSGKIKEGQIIAASGFGAGLTWGSAIFQWG*