AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044020 MtrunA17_Chr1g0210591 97.315 298 8 0 1 298 1 298 0.0 602
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044020 AT2G25100.1 71.141 298 84 2 1 298 1 296 2.41e-165 461
Msa0044020 AT2G25100.2 66.107 298 80 3 1 298 1 277 1.98e-148 417

Find 83 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGAAATTAAACAATT+TGG 0.119349 1_1:+75502231 Msa0044020:CDS
CTGCCATGGGCCTCGTTGAT+AGG 0.233916 1_1:+75499978 Msa0044020:CDS
TGTTTACTTCTTGAGCATTT+TGG 0.237684 1_1:-75499830 None:intergenic
TTGAAAGCCAATGATTCTAT+TGG 0.257884 1_1:+75499769 Msa0044020:CDS
CGTTGATAGGGTGCTCAAAA+TGG 0.268094 1_1:+75499991 Msa0044020:CDS
GATCACAAACATTCTATCTT+TGG 0.271558 1_1:+75500669 Msa0044020:CDS
GCAACCACAAATTTGATAGA+TGG 0.310246 1_1:-75500299 None:intergenic
TATTTCTTCGCTTCTCCTCT+TGG 0.315790 1_1:-75502266 None:intergenic
CAATTGAAATTAAACAATTT+GGG 0.333217 1_1:+75502232 Msa0044020:CDS
CAAGTGGTAAAGGGCGTTCT+AGG 0.341183 1_1:+75502293 Msa0044020:CDS
AACATTAGTCAGGTTTAGTT+GGG 0.344847 1_1:+75500698 Msa0044020:CDS
GGCATCGGAGGCTTGCATAA+TGG 0.349327 1_1:+75498712 Msa0044020:CDS
GTCCTTGGTCCTATGGTCTA+TGG 0.350982 1_1:+75498761 Msa0044020:CDS
CAAATTTGTGGTTGCAAAGA+AGG 0.351422 1_1:+75500307 Msa0044020:CDS
TCTAGCCAAGACTTGGTTGC+AGG 0.363522 1_1:-75500645 None:intergenic
ACTCAATACTAGTGCACATT+TGG 0.366678 1_1:-75502486 None:intergenic
AGAAAGAAAGAAAGGGGAAA+TGG 0.369584 1_1:+75498661 None:intergenic
CAAGCCTCCGATGCCCATTC+CGG 0.377392 1_1:-75498704 None:intergenic
ATCTGAAGCTGGTATGGTTC+CGG 0.384182 1_1:+75498685 Msa0044020:CDS
GCATCGGAGGCTTGCATAAT+GGG 0.384725 1_1:+75498713 Msa0044020:CDS
CAACATTAGTCAGGTTTAGT+TGG 0.397868 1_1:+75500697 Msa0044020:CDS
ATAATGCAAAGACAACAATT+AGG 0.398457 1_1:-75502366 None:intergenic
ATTGATACAGTTGGAGATCC+AGG 0.399985 1_1:+75500245 Msa0044020:CDS
AGCTGGTATGGTTCCGGAAT+GGG 0.405216 1_1:+75498691 Msa0044020:CDS
CTACTCACCTCCGGGATATC+CGG 0.410035 1_1:-75500529 None:intergenic
GGTGGCAGCAATAATAATAA+TGG 0.411127 1_1:+75502202 Msa0044020:CDS
GATAACATTCACAGGAACTT+TGG 0.418465 1_1:+75500504 Msa0044020:CDS
CAACTAAACCTGACTAATGT+TGG 0.422536 1_1:-75500696 None:intergenic
AGGTCCTGTCCTTGGTCCTA+TGG 0.426005 1_1:+75498754 Msa0044020:CDS
GAGATCGAGCTATAAGAGAT+TGG 0.427593 1_1:+75500463 Msa0044020:CDS
AGCCCATCCAATAGAATCAT+TGG 0.430568 1_1:-75499776 None:intergenic
GAAATAGAATCAAGTGGTAA+AGG 0.437381 1_1:+75502283 Msa0044020:CDS
GAAAGAAAGAAAGGGGAAAT+GGG 0.444376 1_1:+75498662 None:intergenic
CAGGTTTATATTGATACAGT+TGG 0.452563 1_1:+75500236 Msa0044020:intron
TTCGCTTCTCCTCTTGGATG+TGG 0.454880 1_1:-75502260 None:intergenic
AAGGTGGCACTGAAGTCTTA+TGG 0.459123 1_1:+75500742 Msa0044020:CDS
AACTTTGGCTCCGGATATCC+CGG 0.468879 1_1:+75500519 Msa0044020:CDS
GTGATCTTCTAGCCAAGACT+TGG 0.469330 1_1:-75500652 None:intergenic
AAATAGAATCAAGTGGTAAA+GGG 0.471476 1_1:+75502284 Msa0044020:CDS
TGCCATGGGCCTCGTTGATA+GGG 0.471507 1_1:+75499979 Msa0044020:CDS
GTTGATAGGGTGCTCAAAAT+GGG 0.472159 1_1:+75499992 Msa0044020:CDS
AATACTAGTGCACATTTGGT+TGG 0.473640 1_1:-75502482 None:intergenic
ATACTTGCACCACTGACAAC+AGG 0.477284 1_1:-75500344 None:intergenic
TAGTGCACATTTGGTTGGAC+TGG 0.482557 1_1:-75502477 None:intergenic
GCTGGAAGAGGTCCTGTCCT+TGG 0.487213 1_1:+75498746 Msa0044020:CDS
AATGGGATCTGAAGCTGGTA+TGG 0.498794 1_1:+75498679 Msa0044020:exon
AGCTTCGCTTCATATTTCCC+TGG 0.499923 1_1:-75500263 None:intergenic
AGATCGAGCTATAAGAGATT+GGG 0.506461 1_1:+75500464 Msa0044020:CDS
TCTGAATGAAGTGATCGAAT+TGG 0.513203 1_1:+75502560 Msa0044020:three_prime_UTR
GACACTAAAAGAAGAGAAGA+GGG 0.517003 1_1:+75499729 Msa0044020:CDS
TAGATCCTGCAACCAAGTCT+TGG 0.525753 1_1:+75500640 Msa0044020:intron
AAGCCAATGATTCTATTGGA+TGG 0.528501 1_1:+75499773 Msa0044020:CDS
TGCGAAACTCAAAGTAGCTA+AGG 0.529377 1_1:-75498816 None:intergenic
AAGCTGGTATGGTTCCGGAA+TGG 0.529747 1_1:+75498690 Msa0044020:CDS
TATGGTTCCGGAATGGGCAT+CGG 0.530630 1_1:+75498697 Msa0044020:CDS
GGGGAAATGGGATCTGAAGC+TGG 0.544977 1_1:+75498674 Msa0044020:exon
ATTCACAGGAACTTTGGCTC+CGG 0.560322 1_1:+75500510 Msa0044020:CDS
TTAGCTACTTTGAGTTTCGC+AGG 0.563355 1_1:+75498818 Msa0044020:CDS
GGAATCGACGAAGCTGGAAG+AGG 0.571188 1_1:+75498734 Msa0044020:CDS
AGTCTGCTGATAACATTCAC+AGG 0.575679 1_1:+75500496 Msa0044020:CDS
AGACACTAAAAGAAGAGAAG+AGG 0.576756 1_1:+75499728 Msa0044020:CDS
TGGTGCAAGTATAGTTGCAA+AGG 0.593002 1_1:+75500355 Msa0044020:CDS
GGTTCCGGAATGGGCATCGG+AGG 0.593246 1_1:+75498700 Msa0044020:CDS
TTGATACAGTTGGAGATCCA+GGG 0.597039 1_1:+75500246 Msa0044020:CDS
CACCCTATCAACGAGGCCCA+TGG 0.597149 1_1:-75499981 None:intergenic
AGCCAATGATTCTATTGGAT+GGG 0.597314 1_1:+75499774 Msa0044020:CDS
GATATCACATGACTCTGCCA+TGG 0.604388 1_1:+75499964 Msa0044020:CDS
AGTGCACATTTGGTTGGACT+GGG 0.605393 1_1:-75502476 None:intergenic
TATAAACAACCATAGACCAT+AGG 0.606448 1_1:-75498770 None:intergenic
AGTCTTTATCCTGTTGTCAG+TGG 0.607604 1_1:+75500335 Msa0044020:CDS
TGTTGATGTCATTGACCCAA+AGG 0.610587 1_1:+75499798 Msa0044020:CDS
ATATCACATGACTCTGCCAT+GGG 0.613919 1_1:+75499965 Msa0044020:CDS
ACATTAGTCAGGTTTAGTTG+GGG 0.616439 1_1:+75500699 Msa0044020:CDS
GCAATAATAATAATGGCAAG+AGG 0.617191 1_1:+75502209 Msa0044020:CDS
GAGTCTGACTTGGATGAAGA+TGG 0.620122 1_1:+75502181 Msa0044020:CDS
AGCGAAGAAATAGAATCAAG+TGG 0.622154 1_1:+75502277 Msa0044020:CDS
ATAATGGGAATCGACGAAGC+TGG 0.629515 1_1:+75498728 Msa0044020:CDS
TAGACCATAGGACCAAGGAC+AGG 0.637946 1_1:-75498758 None:intergenic
TCACTTCATTCAGATGTCCA+AGG 0.642202 1_1:-75502551 None:intergenic
TGGGTTTCACCACATCCAAG+AGG 0.671053 1_1:+75502251 Msa0044020:CDS
AACCATAGACCATAGGACCA+AGG 0.685457 1_1:-75498763 None:intergenic
TCTGACTTGGATGAAGATGG+TGG 0.731629 1_1:+75502184 Msa0044020:CDS
TTTGGCTCCGGATATCCCGG+AGG 0.764877 1_1:+75500522 Msa0044020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAGAATTATAATTAAAAA+TGG - chr1_1:75498915-75498934 None:intergenic 10.0%
!! TTCTAATTAAAATTGAAAAT+AGG + chr1_1:75500997-75501016 Msa0044020:intron 10.0%
!!! TATTTGAAATTTTAGAATTT+TGG + chr1_1:75502405-75502424 Msa0044020:three_prime_UTR 10.0%
!!! CATTTTAGTTACAATAAATA+TGG + chr1_1:75500600-75500619 Msa0044020:intron 15.0%
!!! AGAAAAGTATATTAATTTTC+AGG + chr1_1:75501586-75501605 Msa0044020:intron 15.0%
!! ATTAAATTCCATTATGTATA+TGG + chr1_1:75502058-75502077 Msa0044020:intron 15.0%
!! TTAAATTCCATTATGTATAT+GGG + chr1_1:75502059-75502078 Msa0044020:intron 15.0%
!! CAATTGAAATTAAACAATTT+GGG + chr1_1:75502232-75502251 Msa0044020:CDS 15.0%
!!! TAATGAGTTGGATAAAAATA+TGG + chr1_1:75499464-75499483 Msa0044020:intron 20.0%
!! CTACTATCATTAATTCATTA+TGG - chr1_1:75499625-75499644 None:intergenic 20.0%
!! AAAAAAAAAGCAAAACCAAA+AGG - chr1_1:75499869-75499888 None:intergenic 20.0%
!!! CTTTCTTTTCAATTTAATGA+TGG + chr1_1:75499895-75499914 Msa0044020:intron 20.0%
!!! TTTTCCCAACATATTTTAAT+GGG + chr1_1:75500038-75500057 Msa0044020:intron 20.0%
!! AGATGTGAAATGTATAATTT+GGG + chr1_1:75500208-75500227 Msa0044020:intron 20.0%
!!! CAATAAATATGGTTATGTTT+TGG + chr1_1:75500611-75500630 Msa0044020:intron 20.0%
!!! TTGATTTGATATTGTTATTC+TGG - chr1_1:75501360-75501379 None:intergenic 20.0%
!!! TTATTTGAAACTTTTGTTTC+TGG + chr1_1:75501464-75501483 Msa0044020:intron 20.0%
!!! TATTTGAAACTTTTGTTTCT+GGG + chr1_1:75501465-75501484 Msa0044020:intron 20.0%
!! TCATTTGATAAGTATTAAGT+AGG + chr1_1:75501801-75501820 Msa0044020:intron 20.0%
!! ATGAGAAATATATTGTTTGT+GGG - chr1_1:75502021-75502040 None:intergenic 20.0%
!! TAAATTCCATTATGTATATG+GGG + chr1_1:75502060-75502079 Msa0044020:intron 20.0%
!! CTTATTTATCTGTTAAAACT+TGG + chr1_1:75502145-75502164 Msa0044020:intron 20.0%
!!! TAAAACTTGGACTTTTTTAT+AGG + chr1_1:75502158-75502177 Msa0044020:intron 20.0%
!!! AAAACTTGGACTTTTTTATA+GGG + chr1_1:75502159-75502178 Msa0044020:intron 20.0%
!! GCAATTGAAATTAAACAATT+TGG + chr1_1:75502231-75502250 Msa0044020:CDS 20.0%
! TAATTAAAAATGGAAAGCTC+TGG - chr1_1:75498905-75498924 None:intergenic 25.0%
! TAAACCATCAAATTCAATCT+GGG + chr1_1:75499046-75499065 Msa0044020:intron 25.0%
!! AAAGTACTACTCAAGTTTAA+GGG + chr1_1:75499110-75499129 Msa0044020:intron 25.0%
!!! TTCCTTGTTGTAATTTTAAC+AGG + chr1_1:75499921-75499940 Msa0044020:intron 25.0%
! TTCCTGTTAAAATTACAACA+AGG - chr1_1:75499926-75499945 None:intergenic 25.0%
! CATTAAAATATGTTGGGAAA+AGG - chr1_1:75500039-75500058 None:intergenic 25.0%
!!! CTTTTCCCAACATATTTTAA+TGG + chr1_1:75500037-75500056 Msa0044020:intron 25.0%
! TCTTCCCATTAAAATATGTT+GGG - chr1_1:75500045-75500064 None:intergenic 25.0%
! TTCTTCCCATTAAAATATGT+TGG - chr1_1:75500046-75500065 None:intergenic 25.0%
! GAGATGTGAAATGTATAATT+TGG + chr1_1:75500207-75500226 Msa0044020:intron 25.0%
!! TTTTCCATCTATCAAATTTG+TGG + chr1_1:75500295-75500314 Msa0044020:CDS 25.0%
!!! TTGTTTTCTAAGGATTTGTT+TGG + chr1_1:75500814-75500833 Msa0044020:intron 25.0%
!!! GTTTGGTTTCATAACATTTT+CGG + chr1_1:75500831-75500850 Msa0044020:intron 25.0%
!!! TTTGGTTTCATAACATTTTC+GGG + chr1_1:75500832-75500851 Msa0044020:intron 25.0%
! AAAACAAACTCAAAATAAGG+TGG - chr1_1:75500889-75500908 None:intergenic 25.0%
! CTGAAAACAAACTCAAAATA+AGG - chr1_1:75500892-75500911 None:intergenic 25.0%
!! TCAGTTTTCAAAACATTTTC+TGG + chr1_1:75500908-75500927 Msa0044020:intron 25.0%
!! TTTTTCACTTCCTTAGTTTA+CGG + chr1_1:75501314-75501333 Msa0044020:intron 25.0%
! ATTCCAAAAATTACAAACGT+GGG - chr1_1:75501390-75501409 None:intergenic 25.0%
! AATTCCAAAAATTACAAACG+TGG - chr1_1:75501391-75501410 None:intergenic 25.0%
!! ATGATTCTAGTTACTTAAGT+GGG - chr1_1:75501562-75501581 None:intergenic 25.0%
!! AATGATTCTAGTTACTTAAG+TGG - chr1_1:75501563-75501582 None:intergenic 25.0%
! CTATAACATATCAACTATCA+AGG - chr1_1:75501669-75501688 None:intergenic 25.0%
!! CTTGATAGTTGATATGTTAT+AGG + chr1_1:75501667-75501686 Msa0044020:intron 25.0%
! TGAGAAATATATTGTTTGTG+GGG - chr1_1:75502020-75502039 None:intergenic 25.0%
! CATGAGAAATATATTGTTTG+TGG - chr1_1:75502022-75502041 None:intergenic 25.0%
! ATATTTCTCATGAAAGATGA+AGG + chr1_1:75502030-75502049 Msa0044020:intron 25.0%
! TAACACTTGGAACATAAAAA+TGG - chr1_1:75502108-75502127 None:intergenic 25.0%
! AAATAGAATCAAGTGGTAAA+GGG + chr1_1:75502284-75502303 Msa0044020:CDS 25.0%
!!! ATCATTTTTAGAAATGAGTG+AGG - chr1_1:75502345-75502364 None:intergenic 25.0%
! ATAATGCAAAGACAACAATT+AGG - chr1_1:75502369-75502388 None:intergenic 25.0%
!!! TGTTGAATTTTAATTCACCT+TGG + chr1_1:75502534-75502553 Msa0044020:three_prime_UTR 25.0%
TATAAACAACCATAGACCAT+AGG - chr1_1:75498773-75498792 None:intergenic 30.0%
!!! TCAAAGTAGCTAAGGTTTTT+TGG - chr1_1:75498811-75498830 None:intergenic 30.0%
GTAAACCATCAAATTCAATC+TGG + chr1_1:75499045-75499064 Msa0044020:intron 30.0%
!! GAAAGTACTACTCAAGTTTA+AGG + chr1_1:75499109-75499128 Msa0044020:intron 30.0%
ATGACATTAAAGAGAGAGTT+CGG + chr1_1:75499276-75499295 Msa0044020:intron 30.0%
AGCACCTATATTAGAAAAGA+TGG + chr1_1:75499301-75499320 Msa0044020:intron 30.0%
ACCTATATTAGAAAAGATGG+TGG + chr1_1:75499304-75499323 Msa0044020:intron 30.0%
! TCCACCATCTTTTCTAATAT+AGG - chr1_1:75499308-75499327 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr1_1:75499452-75499471 Msa0044020:intron 30.0%
! TGGTATATGATAGAGCATTA+TGG + chr1_1:75499484-75499503 Msa0044020:intron 30.0%
CTTATCCCACTAAATAGAAT+CGG - chr1_1:75499529-75499548 None:intergenic 30.0%
TTGAAAGCCAATGATTCTAT+TGG + chr1_1:75499769-75499788 Msa0044020:CDS 30.0%
! TGTTTACTTCTTGAGCATTT+TGG - chr1_1:75499833-75499852 None:intergenic 30.0%
! ATCCATACGACATATTTTGT+TGG - chr1_1:75500128-75500147 None:intergenic 30.0%
TACGCTTCTTATAAGTACTT+GGG + chr1_1:75500151-75500170 Msa0044020:intron 30.0%
CAGGTTTATATTGATACAGT+TGG + chr1_1:75500236-75500255 Msa0044020:intron 30.0%
! AACCTTTAATCCAACCTTTT+AGG + chr1_1:75500434-75500453 Msa0044020:intron 30.0%
GATCACAAACATTCTATCTT+TGG + chr1_1:75500669-75500688 Msa0044020:CDS 30.0%
AACATTAGTCAGGTTTAGTT+GGG + chr1_1:75500698-75500717 Msa0044020:CDS 30.0%
!!! ACTTGCAGCTCTTATTTTAA+AGG + chr1_1:75500723-75500742 Msa0044020:CDS 30.0%
AAATCCTTAGAAAACAAGTG+CGG - chr1_1:75500811-75500830 None:intergenic 30.0%
AATGAAAACAGAAACCAAAG+AGG + chr1_1:75501034-75501053 Msa0044020:intron 30.0%
CTGAACAGAACAGTATAAAA+AGG - chr1_1:75501072-75501091 None:intergenic 30.0%
GCAGTATGTCAACATTAATA+TGG - chr1_1:75501182-75501201 None:intergenic 30.0%
ATTAATGTTGACATACTGCT+AGG + chr1_1:75501183-75501202 Msa0044020:intron 30.0%
! TTTTCACTTCCTTAGTTTAC+GGG + chr1_1:75501315-75501334 Msa0044020:intron 30.0%
AAAAATTACAAACGTGGGAT+TGG - chr1_1:75501385-75501404 None:intergenic 30.0%
! AATCCCACGTTTGTAATTTT+TGG + chr1_1:75501384-75501403 Msa0044020:intron 30.0%
AACATGAAGTTAGTGGAATT+TGG - chr1_1:75501527-75501546 None:intergenic 30.0%
ATTGGATAACATGAAGTTAG+TGG - chr1_1:75501534-75501553 None:intergenic 30.0%
! TGATTCTAGTTACTTAAGTG+GGG - chr1_1:75501561-75501580 None:intergenic 30.0%
!! AAAAAAGTGACTTGTTTCTG+TGG - chr1_1:75501740-75501759 None:intergenic 30.0%
ATCTTTCAAAGTTACTTGTG+AGG + chr1_1:75501764-75501783 Msa0044020:intron 30.0%
!! AAAGGCACTGCAAAAAATAT+AGG - chr1_1:75501833-75501852 None:intergenic 30.0%
TTTCCTTTGTTGACAACAAA+AGG - chr1_1:75501851-75501870 None:intergenic 30.0%
AAATATATTGTTTGTGGGGT+GGG - chr1_1:75502016-75502035 None:intergenic 30.0%
! AGTTTTCCCCATATACATAA+TGG - chr1_1:75502069-75502088 None:intergenic 30.0%
GCAATAATAATAATGGCAAG+AGG + chr1_1:75502209-75502228 Msa0044020:CDS 30.0%
GAAATAGAATCAAGTGGTAA+AGG + chr1_1:75502283-75502302 Msa0044020:CDS 30.0%
!!! AGTAGCTAAGGTTTTTTGGT+AGG - chr1_1:75498807-75498826 None:intergenic 35.0%
TTAAGAGAAGAGAAGAGAGT+AGG - chr1_1:75498846-75498865 None:intergenic 35.0%
TTCAACCGACACATAGAAAT+AGG + chr1_1:75499014-75499033 Msa0044020:intron 35.0%
!! CATCTCCTATTTCTATGTGT+CGG - chr1_1:75499022-75499041 None:intergenic 35.0%
TGACATTAAAGAGAGAGTTC+GGG + chr1_1:75499277-75499296 Msa0044020:intron 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr1_1:75499312-75499331 Msa0044020:intron 35.0%
AGACTCGTAGATTTGTACTA+AGG + chr1_1:75499362-75499381 Msa0044020:intron 35.0%
AAGGAGAGTAGATCAAATGA+AGG + chr1_1:75499381-75499400 Msa0044020:intron 35.0%
! ATGTAGCCGATTCTATTTAG+TGG + chr1_1:75499520-75499539 Msa0044020:intron 35.0%
! TGTAGCCGATTCTATTTAGT+GGG + chr1_1:75499521-75499540 Msa0044020:intron 35.0%
CGATTCTATTTAGTGGGATA+AGG + chr1_1:75499527-75499546 Msa0044020:intron 35.0%
TGTCACATTTGCATCTTTGT+TGG + chr1_1:75499694-75499713 Msa0044020:intron 35.0%
AGACACTAAAAGAAGAGAAG+AGG + chr1_1:75499728-75499747 Msa0044020:CDS 35.0%
GACACTAAAAGAAGAGAAGA+GGG + chr1_1:75499729-75499748 Msa0044020:CDS 35.0%
AAGCCAATGATTCTATTGGA+TGG + chr1_1:75499773-75499792 Msa0044020:CDS 35.0%
AGCCAATGATTCTATTGGAT+GGG + chr1_1:75499774-75499793 Msa0044020:CDS 35.0%
AAGCAAAACCAAAAGGACTA+AGG - chr1_1:75499862-75499881 None:intergenic 35.0%
TGCCAACAAAATATGTCGTA+TGG + chr1_1:75500123-75500142 Msa0044020:intron 35.0%
GTACGCTTCTTATAAGTACT+TGG + chr1_1:75500150-75500169 Msa0044020:intron 35.0%
ATGTATAATTTGGGCTCTTC+AGG + chr1_1:75500217-75500236 Msa0044020:intron 35.0%
GCAACCACAAATTTGATAGA+TGG - chr1_1:75500302-75500321 None:intergenic 35.0%
CAAATTTGTGGTTGCAAAGA+AGG + chr1_1:75500307-75500326 Msa0044020:CDS 35.0%
TTAGTGCAGGAAATTCTACA+CGG - chr1_1:75500393-75500412 None:intergenic 35.0%
GACCTAAAAGGTTGGATTAA+AGG - chr1_1:75500439-75500458 None:intergenic 35.0%
AGATCGAGCTATAAGAGATT+GGG + chr1_1:75500464-75500483 Msa0044020:CDS 35.0%
GATAACATTCACAGGAACTT+TGG + chr1_1:75500504-75500523 Msa0044020:CDS 35.0%
!! TTGGTTTTCCAACATTAGTC+AGG + chr1_1:75500688-75500707 Msa0044020:CDS 35.0%
CAACTAAACCTGACTAATGT+TGG - chr1_1:75500699-75500718 None:intergenic 35.0%
CAACATTAGTCAGGTTTAGT+TGG + chr1_1:75500697-75500716 Msa0044020:CDS 35.0%
ACATTAGTCAGGTTTAGTTG+GGG + chr1_1:75500699-75500718 Msa0044020:CDS 35.0%
!!! TGCAGCTCTTATTTTAAAGG+TGG + chr1_1:75500726-75500745 Msa0044020:CDS 35.0%
!! TATACCGCACTTGTTTTCTA+AGG + chr1_1:75500804-75500823 Msa0044020:intron 35.0%
TTTGTTTGCCATACTTTCCA+CGG + chr1_1:75501109-75501128 Msa0044020:intron 35.0%
!!! TTTTTGGAATTTGCTCCTCT+TGG + chr1_1:75501400-75501419 Msa0044020:intron 35.0%
!!! TTTTGGAATTTGCTCCTCTT+GGG + chr1_1:75501401-75501420 Msa0044020:intron 35.0%
!! AATTACTTTTACAGCCCAAG+AGG - chr1_1:75501418-75501437 None:intergenic 35.0%
! ATTCTAGTTACTTAAGTGGG+GGG - chr1_1:75501559-75501578 None:intergenic 35.0%
! GATTCTAGTTACTTAAGTGG+GGG - chr1_1:75501560-75501579 None:intergenic 35.0%
AGTGAAATAGTCCTTGAGAA+AGG + chr1_1:75501640-75501659 Msa0044020:intron 35.0%
TATCAAGGATACCTTTCTCA+AGG - chr1_1:75501654-75501673 None:intergenic 35.0%
GTTGTGAAAATAGCACAAGT+TGG - chr1_1:75501696-75501715 None:intergenic 35.0%
TCAATAATCCTGAAAGCTGT+AGG + chr1_1:75501912-75501931 Msa0044020:intron 35.0%
AAAGCTGTAGGTATTATGCT+TGG + chr1_1:75501924-75501943 Msa0044020:intron 35.0%
CAAAGTTTGTAAGAGAAGAC+TGG - chr1_1:75501963-75501982 None:intergenic 35.0%
TTGAAGCATGAACAATGCAT+GGG + chr1_1:75501986-75502005 Msa0044020:intron 35.0%
AATATATTGTTTGTGGGGTG+GGG - chr1_1:75502015-75502034 None:intergenic 35.0%
GAAATATATTGTTTGTGGGG+TGG - chr1_1:75502017-75502036 None:intergenic 35.0%
! TTTTTATAGGGAGTCTGACT+TGG + chr1_1:75502171-75502190 Msa0044020:intron 35.0%
GGTGGCAGCAATAATAATAA+TGG + chr1_1:75502202-75502221 Msa0044020:CDS 35.0%
AGCGAAGAAATAGAATCAAG+TGG + chr1_1:75502277-75502296 Msa0044020:CDS 35.0%
AATACTAGTGCACATTTGGT+TGG - chr1_1:75502485-75502504 None:intergenic 35.0%
ACTCAATACTAGTGCACATT+TGG - chr1_1:75502489-75502508 None:intergenic 35.0%
TCTGAATGAAGTGATCGAAT+TGG + chr1_1:75502560-75502579 Msa0044020:three_prime_UTR 35.0%
!!! AAGGTTTTTTGGTAGGAGAG+AGG - chr1_1:75498800-75498819 None:intergenic 40.0%
TGCGAAACTCAAAGTAGCTA+AGG - chr1_1:75498819-75498838 None:intergenic 40.0%
! TTAGCTACTTTGAGTTTCGC+AGG + chr1_1:75498818-75498837 Msa0044020:CDS 40.0%
! AAAATGGAAAGCTCTGGCAA+TGG - chr1_1:75498899-75498918 None:intergenic 40.0%
TTATTGCCACTGTTTACGTG+TGG + chr1_1:75498982-75499001 Msa0044020:intron 40.0%
ATACAACCACACGTAAACAG+TGG - chr1_1:75498991-75499010 None:intergenic 40.0%
ACCATCAAATTCAATCTGGG+TGG + chr1_1:75499049-75499068 Msa0044020:intron 40.0%
ACCACCCAGATTGAATTTGA+TGG - chr1_1:75499053-75499072 None:intergenic 40.0%
TTCAATCTGGGTGGTTGAAA+TGG + chr1_1:75499058-75499077 Msa0044020:intron 40.0%
ATGTTGTATGGGACAGTGTT+GGG + chr1_1:75499155-75499174 Msa0044020:intron 40.0%
CTGAGATGAGATTGTTGCAT+TGG + chr1_1:75499218-75499237 Msa0044020:intron 40.0%
!! AGATGGTGGAAACTAGGATT+AGG + chr1_1:75499318-75499337 Msa0044020:intron 40.0%
AAGGATAGTCAGATCACTAG+AGG + chr1_1:75499400-75499419 Msa0044020:intron 40.0%
!! TATGTAGCATTGACACAGAC+AGG - chr1_1:75499588-75499607 None:intergenic 40.0%
AGCCCATCCAATAGAATCAT+TGG - chr1_1:75499779-75499798 None:intergenic 40.0%
TGTTGATGTCATTGACCCAA+AGG + chr1_1:75499798-75499817 Msa0044020:CDS 40.0%
! TTTTGGCAGAGAGTTCCTTT+GGG - chr1_1:75499816-75499835 None:intergenic 40.0%
!! ATTTTGGCAGAGAGTTCCTT+TGG - chr1_1:75499817-75499836 None:intergenic 40.0%
! CAAACAGACCTTAGTCCTTT+TGG + chr1_1:75499851-75499870 Msa0044020:intron 40.0%
ATATCACATGACTCTGCCAT+GGG + chr1_1:75499965-75499984 Msa0044020:CDS 40.0%
! GTTGATAGGGTGCTCAAAAT+GGG + chr1_1:75499992-75500011 Msa0044020:CDS 40.0%
!!! AATGGGAGTGCTTTTAACTG+AGG + chr1_1:75500009-75500028 Msa0044020:CDS 40.0%
! TCTGAAGTCATGTTAGAGCT+GGG - chr1_1:75500074-75500093 None:intergenic 40.0%
! ATCTGAAGTCATGTTAGAGC+TGG - chr1_1:75500075-75500094 None:intergenic 40.0%
ATTGATACAGTTGGAGATCC+AGG + chr1_1:75500245-75500264 Msa0044020:CDS 40.0%
TTGATACAGTTGGAGATCCA+GGG + chr1_1:75500246-75500265 Msa0044020:CDS 40.0%
AGTCTTTATCCTGTTGTCAG+TGG + chr1_1:75500335-75500354 Msa0044020:CDS 40.0%
TGGTGCAAGTATAGTTGCAA+AGG + chr1_1:75500355-75500374 Msa0044020:CDS 40.0%
TAGTGCAGGAAATTCTACAC+GGG - chr1_1:75500392-75500411 None:intergenic 40.0%
ACGGTAAAACTTCTTAGTGC+AGG - chr1_1:75500406-75500425 None:intergenic 40.0%
GATTAAAGGTTGCAGGTAGA+CGG - chr1_1:75500425-75500444 None:intergenic 40.0%
AAGGTTGGATTAAAGGTTGC+AGG - chr1_1:75500432-75500451 None:intergenic 40.0%
TCTCTTGTGACCTAAAAGGT+TGG - chr1_1:75500447-75500466 None:intergenic 40.0%
TCGATCTCTTGTGACCTAAA+AGG - chr1_1:75500451-75500470 None:intergenic 40.0%
GAGATCGAGCTATAAGAGAT+TGG + chr1_1:75500463-75500482 Msa0044020:CDS 40.0%
AGTCTGCTGATAACATTCAC+AGG + chr1_1:75500496-75500515 Msa0044020:CDS 40.0%
GTATACAGTCACAGAATGCA+TGG - chr1_1:75500789-75500808 None:intergenic 40.0%
AGCAGTTAAGCTGCTTATGA+TGG - chr1_1:75501221-75501240 None:intergenic 40.0%
ATCTTGAAGCCCGTAAACTA+AGG - chr1_1:75501327-75501346 None:intergenic 40.0%
TTACTTAAGTGGGGGGAAAT+TGG - chr1_1:75501552-75501571 None:intergenic 40.0%
!! GTGCCTTTTGTTGTCAACAA+AGG + chr1_1:75501845-75501864 Msa0044020:intron 40.0%
GCATAATACCTACAGCTTTC+AGG - chr1_1:75501923-75501942 None:intergenic 40.0%
CTTGAAGCATGAACAATGCA+TGG + chr1_1:75501985-75502004 Msa0044020:intron 40.0%
ATATATTGTTTGTGGGGTGG+GGG - chr1_1:75502014-75502033 None:intergenic 40.0%
TATTTCTTCGCTTCTCCTCT+TGG - chr1_1:75502269-75502288 None:intergenic 40.0%
!!! GTTCTAGGTTTTTTCAGGCT+CGG + chr1_1:75502308-75502327 Msa0044020:CDS 40.0%
TCACTTCATTCAGATGTCCA+AGG - chr1_1:75502554-75502573 None:intergenic 40.0%
! AATGGGATCTGAAGCTGGTA+TGG + chr1_1:75498679-75498698 Msa0044020:exon 45.0%
! ATCTGAAGCTGGTATGGTTC+CGG + chr1_1:75498685-75498704 Msa0044020:CDS 45.0%
! ATAATGGGAATCGACGAAGC+TGG + chr1_1:75498728-75498747 Msa0044020:CDS 45.0%
AACCATAGACCATAGGACCA+AGG - chr1_1:75498766-75498785 None:intergenic 45.0%
AATCTGGGTGGTTGAAATGG+TGG + chr1_1:75499061-75499080 Msa0044020:intron 45.0%
! CCATACAACATCGTTGGTCT+CGG - chr1_1:75499146-75499165 None:intergenic 45.0%
CGAGACCAACGATGTTGTAT+GGG + chr1_1:75499144-75499163 Msa0044020:intron 45.0%
ACTGTCCCATACAACATCGT+TGG - chr1_1:75499152-75499171 None:intergenic 45.0%
GATGTTGTATGGGACAGTGT+TGG + chr1_1:75499154-75499173 Msa0044020:intron 45.0%
TGGTGGAAACTAGGATTAGG+TGG + chr1_1:75499321-75499340 Msa0044020:intron 45.0%
GATATCACATGACTCTGCCA+TGG + chr1_1:75499964-75499983 Msa0044020:CDS 45.0%
! TTTTGAGCACCCTATCAACG+AGG - chr1_1:75499991-75500010 None:intergenic 45.0%
! CGTTGATAGGGTGCTCAAAA+TGG + chr1_1:75499991-75500010 Msa0044020:CDS 45.0%
AGTCATGTTAGAGCTGGGAA+AGG - chr1_1:75500069-75500088 None:intergenic 45.0%
AGCTTCGCTTCATATTTCCC+TGG - chr1_1:75500266-75500285 None:intergenic 45.0%
ATACTTGCACCACTGACAAC+AGG - chr1_1:75500347-75500366 None:intergenic 45.0%
AAATTCTACACGGGAGAGTG+AGG - chr1_1:75500383-75500402 None:intergenic 45.0%
! ATTCACAGGAACTTTGGCTC+CGG + chr1_1:75500510-75500529 Msa0044020:CDS 45.0%
TAGATCCTGCAACCAAGTCT+TGG + chr1_1:75500640-75500659 Msa0044020:intron 45.0%
GTGATCTTCTAGCCAAGACT+TGG - chr1_1:75500655-75500674 None:intergenic 45.0%
! AAGGTGGCACTGAAGTCTTA+TGG + chr1_1:75500742-75500761 Msa0044020:CDS 45.0%
CAAACACACCGTGGAAAGTA+TGG - chr1_1:75501120-75501139 None:intergenic 45.0%
! GTTTCTGTGGTGCTAAGATC+AGG - chr1_1:75501727-75501746 None:intergenic 45.0%
TATATTGTTTGTGGGGTGGG+GGG - chr1_1:75502013-75502032 None:intergenic 45.0%
TGTTCCAAGTGTTACGTGCT+AGG + chr1_1:75502114-75502133 Msa0044020:intron 45.0%
!! GAGTCTGACTTGGATGAAGA+TGG + chr1_1:75502181-75502200 Msa0044020:CDS 45.0%
!! TCTGACTTGGATGAAGATGG+TGG + chr1_1:75502184-75502203 Msa0044020:CDS 45.0%
!!! AGGGCGTTCTAGGTTTTTTC+AGG + chr1_1:75502303-75502322 Msa0044020:CDS 45.0%
AGTGCACATTTGGTTGGACT+GGG - chr1_1:75502479-75502498 None:intergenic 45.0%
TAGTGCACATTTGGTTGGAC+TGG - chr1_1:75502480-75502499 None:intergenic 45.0%
!! AAATTAAATAAAAGAATAAA+TGG - chr1_1:75501291-75501310 None:intergenic 5.0%
AAGCTGGTATGGTTCCGGAA+TGG + chr1_1:75498690-75498709 Msa0044020:CDS 50.0%
AGCTGGTATGGTTCCGGAAT+GGG + chr1_1:75498691-75498710 Msa0044020:CDS 50.0%
TATGGTTCCGGAATGGGCAT+CGG + chr1_1:75498697-75498716 Msa0044020:CDS 50.0%
GCATCGGAGGCTTGCATAAT+GGG + chr1_1:75498713-75498732 Msa0044020:CDS 50.0%
TAGACCATAGGACCAAGGAC+AGG - chr1_1:75498761-75498780 None:intergenic 50.0%
GTCCTTGGTCCTATGGTCTA+TGG + chr1_1:75498761-75498780 Msa0044020:CDS 50.0%
CCGAGACCAACGATGTTGTA+TGG + chr1_1:75499143-75499162 Msa0044020:intron 50.0%
AGTCAGATCACTAGAGGCAG+AGG + chr1_1:75499406-75499425 Msa0044020:intron 50.0%
ACTAGAGGCAGAGGAGGATT+AGG + chr1_1:75499415-75499434 Msa0044020:intron 50.0%
! AACTTTGGCTCCGGATATCC+CGG + chr1_1:75500519-75500538 Msa0044020:CDS 50.0%
AGTCATGACCTACTCACCTC+CGG - chr1_1:75500541-75500560 None:intergenic 50.0%
! TCTAGCCAAGACTTGGTTGC+AGG - chr1_1:75500648-75500667 None:intergenic 50.0%
GGAAAAACGCAGAGCCTCTT+TGG - chr1_1:75501051-75501070 None:intergenic 50.0%
TTCCACGGTGTGTTTGAGCT+AGG + chr1_1:75501124-75501143 Msa0044020:intron 50.0%
TGTGTTTGAGCTAGGCTGGT+AGG + chr1_1:75501132-75501151 Msa0044020:intron 50.0%
AACGCCTAGCACGTAACACT+TGG - chr1_1:75502121-75502140 None:intergenic 50.0%
TGGGTTTCACCACATCCAAG+AGG + chr1_1:75502251-75502270 Msa0044020:CDS 50.0%
TTCGCTTCTCCTCTTGGATG+TGG - chr1_1:75502263-75502282 None:intergenic 50.0%
!! CAAGTGGTAAAGGGCGTTCT+AGG + chr1_1:75502293-75502312 Msa0044020:CDS 50.0%
! GGGGAAATGGGATCTGAAGC+TGG + chr1_1:75498674-75498693 Msa0044020:exon 55.0%
! GGCATCGGAGGCTTGCATAA+TGG + chr1_1:75498712-75498731 Msa0044020:CDS 55.0%
GGAATCGACGAAGCTGGAAG+AGG + chr1_1:75498734-75498753 Msa0044020:CDS 55.0%
AGGTCCTGTCCTTGGTCCTA+TGG + chr1_1:75498754-75498773 Msa0044020:CDS 55.0%
CAGATCACTAGAGGCAGAGG+AGG + chr1_1:75499409-75499428 Msa0044020:intron 55.0%
TGCCATGGGCCTCGTTGATA+GGG + chr1_1:75499979-75499998 Msa0044020:CDS 55.0%
CTACTCACCTCCGGGATATC+CGG - chr1_1:75500532-75500551 None:intergenic 55.0%
GTCATGACCTACTCACCTCC+GGG - chr1_1:75500540-75500559 None:intergenic 55.0%
AGCCTAGCTCAAACACACCG+TGG - chr1_1:75501129-75501148 None:intergenic 55.0%
ACGGTGTGTTTGAGCTAGGC+TGG + chr1_1:75501128-75501147 Msa0044020:intron 55.0%
CAAGCCTCCGATGCCCATTC+CGG - chr1_1:75498707-75498726 None:intergenic 60.0%
GCTGGAAGAGGTCCTGTCCT+TGG + chr1_1:75498746-75498765 Msa0044020:CDS 60.0%
CTGCCATGGGCCTCGTTGAT+AGG + chr1_1:75499978-75499997 Msa0044020:CDS 60.0%
CACCCTATCAACGAGGCCCA+TGG - chr1_1:75499984-75500003 None:intergenic 60.0%
! TTTGGCTCCGGATATCCCGG+AGG + chr1_1:75500522-75500541 Msa0044020:CDS 60.0%
CGGATATCCCGGAGGTGAGT+AGG + chr1_1:75500530-75500549 Msa0044020:intron 60.0%
!! GGTTCCGGAATGGGCATCGG+AGG + chr1_1:75498700-75498719 Msa0044020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75498673 75502586 75498673 ID=Msa0044020;Name=Msa0044020
chr1_1 mRNA 75498673 75502586 75498673 ID=Msa0044020-mRNA-1;Parent=Msa0044020;Name=Msa0044020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=7|1|1|1|1|1|7|229|298
chr1_1 exon 75498673 75498839 75498673 ID=Msa0044020-mRNA-1:exon:25474;Parent=Msa0044020-mRNA-1
chr1_1 exon 75499722 75499845 75499722 ID=Msa0044020-mRNA-1:exon:25475;Parent=Msa0044020-mRNA-1
chr1_1 exon 75499943 75500030 75499943 ID=Msa0044020-mRNA-1:exon:25476;Parent=Msa0044020-mRNA-1
chr1_1 exon 75500239 75500376 75500239 ID=Msa0044020-mRNA-1:exon:25477;Parent=Msa0044020-mRNA-1
chr1_1 exon 75500456 75500543 75500456 ID=Msa0044020-mRNA-1:exon:25478;Parent=Msa0044020-mRNA-1
chr1_1 exon 75500643 75500763 75500643 ID=Msa0044020-mRNA-1:exon:25479;Parent=Msa0044020-mRNA-1
chr1_1 exon 75502180 75502586 75502180 ID=Msa0044020-mRNA-1:exon:25480;Parent=Msa0044020-mRNA-1
chr1_1 five_prime_UTR 75498673 75498679 75498673 ID=Msa0044020-mRNA-1:five_prime_utr;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75498680 75498839 75498680 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75499722 75499845 75499722 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75499943 75500030 75499943 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75500239 75500376 75500239 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75500456 75500543 75500456 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75500643 75500763 75500643 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 CDS 75502180 75502357 75502180 ID=Msa0044020-mRNA-1:cds;Parent=Msa0044020-mRNA-1
chr1_1 three_prime_UTR 75502358 75502586 75502358 ID=Msa0044020-mRNA-1:three_prime_utr;Parent=Msa0044020-mRNA-1
Gene Sequence

>Msa0044020

ATGGGATCTGAAGCTGGTATGGTTCCGGAATGGGCATCGGAGGCTTGCATAATGGGAATCGACGAAGCTGGAAGAGGTCCTGTCCTTGGTCCTATGGTCTATGGTTGTTTATACTGTCCTCTCTCCTACCAAAAAACCTTAGCTACTTTGAGTTTCGCAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGAAACTTTGAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAAGGAACTCTCTGCCAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCATGGGCCTCGTTGATAGGGTGCTCAAAATGGGAGTGCTTTTAACTGAGGTTTATATTGATACAGTTGGAGATCCAGGGAAATATGAAGCGAAGCTGTCTAAAAATTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGTATAGTTGCAAAGGTCACAAGAGATCGAGCTATAAGAGATTGGGTGCTTGATGAGTCTGCTGATAACATTCACAGGAACTTTGGCTCCGGATATCCCGGAGATCCTGCAACCAAGTCTTGGCTAGAAGATCACAAACATTCTATCTTTGGTTTTCCAACATTAGTCAGGTTTAGTTGGGGAACTTGCAGCTCTTATTTTAAAGGTGGCACTGAAGTCTTATGGGAGTCTGACTTGGATGAAGATGGTGGCAGCAATAATAATAATGGCAAGAGGCAATTGAAATTAAACAATTTGGGTTTCACCACATCCAAGAGGAGAAGCGAAGAAATAGAATCAAGTGGTAAAGGGCGTTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTCATTTCTAA

Protein sequence

>Msa0044020

MGSEAGMVPEWASEACIMGIDEAGRGPVLGPMVYGCLYCPLSYQKTLATLSFADSKTLKEEKREELFETLKANDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEAKLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAIRDWVLDESADNIHRNFGSGYPGDPATKSWLEDHKHSIFGFPTLVRFSWGTCSSYFKGGTEVLWESDLDEDGGSNNNNGKRQLKLNNLGFTTSKRRSEEIESSGKGRSRFFQARKLEHLTHF*