AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652980 MtrunA17_Chr4g0046891 97.133 279 8 0 1 279 1 279 0.0 561
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652980 AT4G26415.1 45.299 234 61 10 3 192 7 217 3.23e-44 152

Find 59 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCCTCAAGAACTCTT+TGG 0.228130 4_3:-60771085 Msa0652980:CDS
TCAATGAATATAGTGGAATA+AGG 0.272127 4_3:-60770816 Msa0652980:CDS
TGGTGTTGTGGCAAAGTTAA+TGG 0.280238 4_3:-60770560 Msa0652980:CDS
GCCATTTGAGAGGCATGATT+TGG 0.298125 4_3:-60770440 Msa0652980:CDS
TCCATGTATAGGTCATCTTT+TGG 0.313265 4_3:-60770700 Msa0652980:CDS
TCTTATGCCTTTCTTCATCT+TGG 0.319608 4_3:+60771059 None:intergenic
TTTCTCCTCAAGAACTCTTT+GGG 0.349291 4_3:-60771084 Msa0652980:CDS
AACCAACAAAATAGTACTAT+TGG 0.366556 4_3:-60771000 Msa0652980:CDS
TGGATATTGTATTATGAAAC+CGG 0.367697 4_3:-60770335 Msa0652980:CDS
GGATGAGTAGTGTTGATTGT+AGG 0.385703 4_3:-60770483 Msa0652980:CDS
CAATGAATATAGTGGAATAA+GGG 0.392950 4_3:-60770815 Msa0652980:CDS
AGAACCAAAGCTTGATGAAA+AGG 0.407802 4_3:-60770635 Msa0652980:CDS
GCCATAGCTTCTAGAGAAAC+CGG 0.424661 4_3:+60770316 None:intergenic
GGTGTTGTGGCAAAGTTAAT+GGG 0.432813 4_3:-60770559 Msa0652980:CDS
TGTGGCAAAGTTAATGGGTT+TGG 0.433784 4_3:-60770554 Msa0652980:CDS
TCTTATACTACAATTAGAAA+TGG 0.443850 4_3:-60770866 Msa0652980:CDS
CTCCTTGGTTGCCAACTACT+AGG 0.453422 4_3:+60770286 None:intergenic
GTTAGAAGAAGAAATAGGTC+TGG 0.472977 4_3:-60770373 Msa0652980:CDS
AGTATAAGATCTTCTAATGT+TGG 0.477524 4_3:+60770880 None:intergenic
TCCAAATCATGCCTCTCAAA+TGG 0.478781 4_3:+60770439 None:intergenic
TGCTGCTTGTGATGTCAACT+TGG 0.485632 4_3:+60770956 None:intergenic
AGTACTATTGGCAATGGCAT+TGG 0.489373 4_3:-60770988 Msa0652980:CDS
CTAATCTAAACATATCTCCT+TGG 0.491234 4_3:+60770271 None:intergenic
AAAACTAGCAATGGACATGC+AGG 0.491726 4_3:-60770413 Msa0652980:CDS
CCCAAAAGATGACCTATACA+TGG 0.498041 4_3:+60770699 None:intergenic
TTGTGATGTCAACTTGGCTA+TGG 0.503039 4_3:+60770962 None:intergenic
TTCTCCCCAGCAACTGTTGG+TGG 0.503702 4_3:+60770601 None:intergenic
GTAGGAGACAAAATATAAGA+AGG 0.511223 4_3:-60770465 Msa0652980:CDS
ATGGAAGAGATTCCATGTAT+AGG 0.512387 4_3:-60770711 Msa0652980:CDS
ATTAACTTTGCCACAACACC+AGG 0.513967 4_3:+60770562 None:intergenic
TGGCAGGAGGTCCTAGTAGT+TGG 0.521625 4_3:-60770297 Msa0652980:CDS
ACCGGTTTCTCTAGAAGCTA+TGG 0.522607 4_3:-60770317 Msa0652980:CDS
TTGCTGGGGAGAACGTGGTT+TGG 0.527912 4_3:-60770591 Msa0652980:CDS
ACATTGTTAGAAGAAGAAAT+AGG 0.529346 4_3:-60770378 Msa0652980:CDS
ATGCTTTGAATCAATATCCA+AGG 0.531501 4_3:-60770744 Msa0652980:CDS
AAATGGAGGAAGAGATGGCA+AGG 0.533678 4_3:-60770849 Msa0652980:CDS
ATTAGAAATGGAGGAAGAGA+TGG 0.541356 4_3:-60770854 Msa0652980:CDS
GAGTTCTTGAGGAGAAAGAA+TGG 0.549925 4_3:+60771090 None:intergenic
TTGGGAGCCAAGATGAAGAA+AGG 0.561593 4_3:-60771066 Msa0652980:CDS
CAAAATAGTACTATTGGCAA+TGG 0.563916 4_3:-60770994 Msa0652980:CDS
CTTCCATCAAGTGAAAACCT+TGG 0.575355 4_3:+60770727 None:intergenic
GTCCTAGTAGTTGGCAACCA+AGG 0.577078 4_3:-60770288 Msa0652980:CDS
AATGAATATAGTGGAATAAG+GGG 0.579962 4_3:-60770814 Msa0652980:CDS
TATACTACAATTAGAAATGG+AGG 0.596710 4_3:-60770863 Msa0652980:CDS
TGGCTCCCAAAGAGTTCTTG+AGG 0.597986 4_3:+60771079 None:intergenic
GAAGCTATTCCAGTGTCAGT+AGG 0.605402 4_3:-60770532 Msa0652980:CDS
TTTGGAGAGAAAACTAGCAA+TGG 0.605568 4_3:-60770422 Msa0652980:CDS
AACGTGGTTTGGTGTAAACC+TGG 0.608504 4_3:-60770580 Msa0652980:CDS
GTTTCTCTAGAAGCTATGGC+AGG 0.610709 4_3:-60770313 Msa0652980:CDS
AACAGTTGCTGGGGAGAACG+TGG 0.612915 4_3:-60770596 Msa0652980:CDS
AATATAGTGGAATAAGGGGA+AGG 0.620558 4_3:-60770810 Msa0652980:CDS
GGAGACAAAATATAAGAAGG+AGG 0.626425 4_3:-60770462 Msa0652980:CDS
TAAGAAGGAGGCCATTTGAG+AGG 0.627512 4_3:-60770450 Msa0652980:CDS
CTGACATATTAAGATCTGCA+AGG 0.639107 4_3:-60770768 Msa0652980:CDS
AGTTGACATCACAAGCAGCA+AGG 0.656859 4_3:-60770953 Msa0652980:CDS
ACGTTCTCCCCAGCAACTGT+TGG 0.657823 4_3:+60770598 None:intergenic
TCTCTAGAAGCTATGGCAGG+AGG 0.665560 4_3:-60770310 Msa0652980:CDS
TTGGTGTAAACCTGGTGTTG+TGG 0.669247 4_3:-60770572 Msa0652980:CDS
AAACTAGCAATGGACATGCA+GGG 0.676573 4_3:-60770412 Msa0652980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTATACTACAATTAGAAA+TGG - chr4_3:60770503-60770522 Msa0652980:CDS 20.0%
!! TCTTATACTACAATTAGAAA+TGG - chr4_3:60770503-60770522 Msa0652980:CDS 20.0%
! AACCAACAAAATAGTACTAT+TGG - chr4_3:60770369-60770388 Msa0652980:CDS 25.0%
! AGTATAAGATCTTCTAATGT+TGG + chr4_3:60770492-60770511 None:intergenic 25.0%
! TATACTACAATTAGAAATGG+AGG - chr4_3:60770506-60770525 Msa0652980:CDS 25.0%
! GAAAAACTCAATGAATATAG+TGG - chr4_3:60770546-60770565 Msa0652980:CDS 25.0%
!! TCAATGAATATAGTGGAATA+AGG - chr4_3:60770553-60770572 Msa0652980:CDS 25.0%
!! CAATGAATATAGTGGAATAA+GGG - chr4_3:60770554-60770573 Msa0652980:CDS 25.0%
!! AATGAATATAGTGGAATAAG+GGG - chr4_3:60770555-60770574 Msa0652980:CDS 25.0%
! ACATTGTTAGAAGAAGAAAT+AGG - chr4_3:60770991-60771010 Msa0652980:CDS 25.0%
! TGGATATTGTATTATGAAAC+CGG - chr4_3:60771034-60771053 Msa0652980:CDS 25.0%
! AACCAACAAAATAGTACTAT+TGG - chr4_3:60770369-60770388 Msa0652980:CDS 25.0%
! AGTATAAGATCTTCTAATGT+TGG + chr4_3:60770492-60770511 None:intergenic 25.0%
! TATACTACAATTAGAAATGG+AGG - chr4_3:60770506-60770525 Msa0652980:CDS 25.0%
! GAAAAACTCAATGAATATAG+TGG - chr4_3:60770546-60770565 Msa0652980:CDS 25.0%
!! TCAATGAATATAGTGGAATA+AGG - chr4_3:60770553-60770572 Msa0652980:CDS 25.0%
!! CAATGAATATAGTGGAATAA+GGG - chr4_3:60770554-60770573 Msa0652980:CDS 25.0%
!! AATGAATATAGTGGAATAAG+GGG - chr4_3:60770555-60770574 Msa0652980:CDS 25.0%
! ACATTGTTAGAAGAAGAAAT+AGG - chr4_3:60770991-60771010 Msa0652980:CDS 25.0%
! TGGATATTGTATTATGAAAC+CGG - chr4_3:60771034-60771053 Msa0652980:CDS 25.0%
!!! ATTTTGTTGGTTTAGAGTTG+AGG + chr4_3:60770361-60770380 None:intergenic 30.0%
! TGCCAATAGTACTATTTTGT+TGG + chr4_3:60770374-60770393 None:intergenic 30.0%
CAAAATAGTACTATTGGCAA+TGG - chr4_3:60770375-60770394 Msa0652980:CDS 30.0%
AGTTGTCACATTGCAAAAAA+GGG + chr4_3:60770449-60770468 None:intergenic 30.0%
! ATGCTTTGAATCAATATCCA+AGG - chr4_3:60770625-60770644 Msa0652980:CDS 30.0%
! ATAACCTTTTCATCAAGCTT+TGG + chr4_3:60770741-60770760 None:intergenic 30.0%
AAAGATCTGACAAAAAAGAG+AGG - chr4_3:60770865-60770884 Msa0652980:CDS 30.0%
GTAGGAGACAAAATATAAGA+AGG - chr4_3:60770904-60770923 Msa0652980:CDS 30.0%
!!! TCTGGTTTTTGCTCTAAAAA+TGG - chr4_3:60771014-60771033 Msa0652980:CDS 30.0%
!!! ATTTTGTTGGTTTAGAGTTG+AGG + chr4_3:60770361-60770380 None:intergenic 30.0%
! TGCCAATAGTACTATTTTGT+TGG + chr4_3:60770374-60770393 None:intergenic 30.0%
CAAAATAGTACTATTGGCAA+TGG - chr4_3:60770375-60770394 Msa0652980:CDS 30.0%
AGTTGTCACATTGCAAAAAA+GGG + chr4_3:60770449-60770468 None:intergenic 30.0%
! ATGCTTTGAATCAATATCCA+AGG - chr4_3:60770625-60770644 Msa0652980:CDS 30.0%
! ATAACCTTTTCATCAAGCTT+TGG + chr4_3:60770741-60770760 None:intergenic 30.0%
AAAGATCTGACAAAAAAGAG+AGG - chr4_3:60770865-60770884 Msa0652980:CDS 30.0%
GTAGGAGACAAAATATAAGA+AGG - chr4_3:60770904-60770923 Msa0652980:CDS 30.0%
!!! TCTGGTTTTTGCTCTAAAAA+TGG - chr4_3:60771014-60771033 Msa0652980:CDS 30.0%
TTTCTCCTCAAGAACTCTTT+GGG - chr4_3:60770285-60770304 Msa0652980:CDS 35.0%
TCTTATGCCTTTCTTCATCT+TGG + chr4_3:60770313-60770332 None:intergenic 35.0%
GTTGTCACATTGCAAAAAAG+GGG + chr4_3:60770448-60770467 None:intergenic 35.0%
GAGTTGTCACATTGCAAAAA+AGG + chr4_3:60770450-60770469 None:intergenic 35.0%
ATTAGAAATGGAGGAAGAGA+TGG - chr4_3:60770515-60770534 Msa0652980:CDS 35.0%
! AATATAGTGGAATAAGGGGA+AGG - chr4_3:60770559-60770578 Msa0652980:CDS 35.0%
CTGACATATTAAGATCTGCA+AGG - chr4_3:60770601-60770620 Msa0652980:CDS 35.0%
! TATCCAAGGTTTTCACTTGA+TGG - chr4_3:60770639-60770658 Msa0652980:CDS 35.0%
ATGGAAGAGATTCCATGTAT+AGG - chr4_3:60770658-60770677 Msa0652980:CDS 35.0%
! TCCATGTATAGGTCATCTTT+TGG - chr4_3:60770669-60770688 Msa0652980:CDS 35.0%
! CCATGTATAGGTCATCTTTT+GGG - chr4_3:60770670-60770689 Msa0652980:CDS 35.0%
!!! TCATCTTTTGGGACTATAGA+AGG - chr4_3:60770681-60770700 Msa0652980:CDS 35.0%
AGAACCAAAGCTTGATGAAA+AGG - chr4_3:60770734-60770753 Msa0652980:CDS 35.0%
GGAGACAAAATATAAGAAGG+AGG - chr4_3:60770907-60770926 Msa0652980:CDS 35.0%
TTTGGAGAGAAAACTAGCAA+TGG - chr4_3:60770947-60770966 Msa0652980:CDS 35.0%
GTTAGAAGAAGAAATAGGTC+TGG - chr4_3:60770996-60771015 Msa0652980:CDS 35.0%
TTTCTCCTCAAGAACTCTTT+GGG - chr4_3:60770285-60770304 Msa0652980:CDS 35.0%
TCTTATGCCTTTCTTCATCT+TGG + chr4_3:60770313-60770332 None:intergenic 35.0%
GTTGTCACATTGCAAAAAAG+GGG + chr4_3:60770448-60770467 None:intergenic 35.0%
GAGTTGTCACATTGCAAAAA+AGG + chr4_3:60770450-60770469 None:intergenic 35.0%
ATTAGAAATGGAGGAAGAGA+TGG - chr4_3:60770515-60770534 Msa0652980:CDS 35.0%
! AATATAGTGGAATAAGGGGA+AGG - chr4_3:60770559-60770578 Msa0652980:CDS 35.0%
CTGACATATTAAGATCTGCA+AGG - chr4_3:60770601-60770620 Msa0652980:CDS 35.0%
! TATCCAAGGTTTTCACTTGA+TGG - chr4_3:60770639-60770658 Msa0652980:CDS 35.0%
ATGGAAGAGATTCCATGTAT+AGG - chr4_3:60770658-60770677 Msa0652980:CDS 35.0%
! TCCATGTATAGGTCATCTTT+TGG - chr4_3:60770669-60770688 Msa0652980:CDS 35.0%
! CCATGTATAGGTCATCTTTT+GGG - chr4_3:60770670-60770689 Msa0652980:CDS 35.0%
!!! TCATCTTTTGGGACTATAGA+AGG - chr4_3:60770681-60770700 Msa0652980:CDS 35.0%
AGAACCAAAGCTTGATGAAA+AGG - chr4_3:60770734-60770753 Msa0652980:CDS 35.0%
GGAGACAAAATATAAGAAGG+AGG - chr4_3:60770907-60770926 Msa0652980:CDS 35.0%
TTTGGAGAGAAAACTAGCAA+TGG - chr4_3:60770947-60770966 Msa0652980:CDS 35.0%
GTTAGAAGAAGAAATAGGTC+TGG - chr4_3:60770996-60771015 Msa0652980:CDS 35.0%
GAGTTCTTGAGGAGAAAGAA+TGG + chr4_3:60770282-60770301 None:intergenic 40.0%
CTTTCTCCTCAAGAACTCTT+TGG - chr4_3:60770284-60770303 Msa0652980:CDS 40.0%
AGTACTATTGGCAATGGCAT+TGG - chr4_3:60770381-60770400 Msa0652980:CDS 40.0%
TTGTGATGTCAACTTGGCTA+TGG + chr4_3:60770410-60770429 None:intergenic 40.0%
CTTCCATCAAGTGAAAACCT+TGG + chr4_3:60770645-60770664 None:intergenic 40.0%
CCCAAAAGATGACCTATACA+TGG + chr4_3:60770673-60770692 None:intergenic 40.0%
ATTAACTTTGCCACAACACC+AGG + chr4_3:60770810-60770829 None:intergenic 40.0%
!! TGGTGTTGTGGCAAAGTTAA+TGG - chr4_3:60770809-60770828 Msa0652980:CDS 40.0%
! GGTGTTGTGGCAAAGTTAAT+GGG - chr4_3:60770810-60770829 Msa0652980:CDS 40.0%
!! TGTGGCAAAGTTAATGGGTT+TGG - chr4_3:60770815-60770834 Msa0652980:CDS 40.0%
! CTTTTTCTACCTACTGACAC+TGG + chr4_3:60770849-60770868 None:intergenic 40.0%
!! GGATGAGTAGTGTTGATTGT+AGG - chr4_3:60770886-60770905 Msa0652980:CDS 40.0%
TCCAAATCATGCCTCTCAAA+TGG + chr4_3:60770933-60770952 None:intergenic 40.0%
AAAACTAGCAATGGACATGC+AGG - chr4_3:60770956-60770975 Msa0652980:CDS 40.0%
AAACTAGCAATGGACATGCA+GGG - chr4_3:60770957-60770976 Msa0652980:CDS 40.0%
GAGTTCTTGAGGAGAAAGAA+TGG + chr4_3:60770282-60770301 None:intergenic 40.0%
CTTTCTCCTCAAGAACTCTT+TGG - chr4_3:60770284-60770303 Msa0652980:CDS 40.0%
AGTACTATTGGCAATGGCAT+TGG - chr4_3:60770381-60770400 Msa0652980:CDS 40.0%
TTGTGATGTCAACTTGGCTA+TGG + chr4_3:60770410-60770429 None:intergenic 40.0%
CTTCCATCAAGTGAAAACCT+TGG + chr4_3:60770645-60770664 None:intergenic 40.0%
CCCAAAAGATGACCTATACA+TGG + chr4_3:60770673-60770692 None:intergenic 40.0%
ATTAACTTTGCCACAACACC+AGG + chr4_3:60770810-60770829 None:intergenic 40.0%
!! TGGTGTTGTGGCAAAGTTAA+TGG - chr4_3:60770809-60770828 Msa0652980:CDS 40.0%
! GGTGTTGTGGCAAAGTTAAT+GGG - chr4_3:60770810-60770829 Msa0652980:CDS 40.0%
!! TGTGGCAAAGTTAATGGGTT+TGG - chr4_3:60770815-60770834 Msa0652980:CDS 40.0%
! CTTTTTCTACCTACTGACAC+TGG + chr4_3:60770849-60770868 None:intergenic 40.0%
!! GGATGAGTAGTGTTGATTGT+AGG - chr4_3:60770886-60770905 Msa0652980:CDS 40.0%
TCCAAATCATGCCTCTCAAA+TGG + chr4_3:60770933-60770952 None:intergenic 40.0%
AAAACTAGCAATGGACATGC+AGG - chr4_3:60770956-60770975 Msa0652980:CDS 40.0%
AAACTAGCAATGGACATGCA+GGG - chr4_3:60770957-60770976 Msa0652980:CDS 40.0%
TTGGGAGCCAAGATGAAGAA+AGG - chr4_3:60770303-60770322 Msa0652980:CDS 45.0%
! TGCTGCTTGTGATGTCAACT+TGG + chr4_3:60770416-60770435 None:intergenic 45.0%
AGTTGACATCACAAGCAGCA+AGG - chr4_3:60770416-60770435 Msa0652980:CDS 45.0%
AAATGGAGGAAGAGATGGCA+AGG - chr4_3:60770520-60770539 Msa0652980:CDS 45.0%
! TGTTTTCCACCAACAGTTGC+TGG - chr4_3:60770762-60770781 Msa0652980:CDS 45.0%
! GTTTTCCACCAACAGTTGCT+GGG - chr4_3:60770763-60770782 Msa0652980:CDS 45.0%
! TTTTCCACCAACAGTTGCTG+GGG - chr4_3:60770764-60770783 Msa0652980:CDS 45.0%
!! AACGTGGTTTGGTGTAAACC+TGG - chr4_3:60770789-60770808 Msa0652980:CDS 45.0%
! TTGGTGTAAACCTGGTGTTG+TGG - chr4_3:60770797-60770816 Msa0652980:CDS 45.0%
GAAGCTATTCCAGTGTCAGT+AGG - chr4_3:60770837-60770856 Msa0652980:CDS 45.0%
TAAGAAGGAGGCCATTTGAG+AGG - chr4_3:60770919-60770938 Msa0652980:CDS 45.0%
! GCCATTTGAGAGGCATGATT+TGG - chr4_3:60770929-60770948 Msa0652980:CDS 45.0%
! ACCGGTTTCTCTAGAAGCTA+TGG - chr4_3:60771052-60771071 Msa0652980:CDS 45.0%
! GCCATAGCTTCTAGAGAAAC+CGG + chr4_3:60771056-60771075 None:intergenic 45.0%
! GTTTCTCTAGAAGCTATGGC+AGG - chr4_3:60771056-60771075 Msa0652980:CDS 45.0%
TTGGGAGCCAAGATGAAGAA+AGG - chr4_3:60770303-60770322 Msa0652980:CDS 45.0%
! TGCTGCTTGTGATGTCAACT+TGG + chr4_3:60770416-60770435 None:intergenic 45.0%
AGTTGACATCACAAGCAGCA+AGG - chr4_3:60770416-60770435 Msa0652980:CDS 45.0%
AAATGGAGGAAGAGATGGCA+AGG - chr4_3:60770520-60770539 Msa0652980:CDS 45.0%
! TGTTTTCCACCAACAGTTGC+TGG - chr4_3:60770762-60770781 Msa0652980:CDS 45.0%
! GTTTTCCACCAACAGTTGCT+GGG - chr4_3:60770763-60770782 Msa0652980:CDS 45.0%
! TTTTCCACCAACAGTTGCTG+GGG - chr4_3:60770764-60770783 Msa0652980:CDS 45.0%
!! AACGTGGTTTGGTGTAAACC+TGG - chr4_3:60770789-60770808 Msa0652980:CDS 45.0%
! TTGGTGTAAACCTGGTGTTG+TGG - chr4_3:60770797-60770816 Msa0652980:CDS 45.0%
GAAGCTATTCCAGTGTCAGT+AGG - chr4_3:60770837-60770856 Msa0652980:CDS 45.0%
TAAGAAGGAGGCCATTTGAG+AGG - chr4_3:60770919-60770938 Msa0652980:CDS 45.0%
! GCCATTTGAGAGGCATGATT+TGG - chr4_3:60770929-60770948 Msa0652980:CDS 45.0%
! ACCGGTTTCTCTAGAAGCTA+TGG - chr4_3:60771052-60771071 Msa0652980:CDS 45.0%
! GCCATAGCTTCTAGAGAAAC+CGG + chr4_3:60771056-60771075 None:intergenic 45.0%
! GTTTCTCTAGAAGCTATGGC+AGG - chr4_3:60771056-60771075 Msa0652980:CDS 45.0%
TGGCTCCCAAAGAGTTCTTG+AGG + chr4_3:60770293-60770312 None:intergenic 50.0%
! TCTCTAGAAGCTATGGCAGG+AGG - chr4_3:60771059-60771078 Msa0652980:CDS 50.0%
GTCCTAGTAGTTGGCAACCA+AGG - chr4_3:60771081-60771100 Msa0652980:CDS 50.0%
CTCCTTGGTTGCCAACTACT+AGG + chr4_3:60771086-60771105 None:intergenic 50.0%
TGGCTCCCAAAGAGTTCTTG+AGG + chr4_3:60770293-60770312 None:intergenic 50.0%
! TCTCTAGAAGCTATGGCAGG+AGG - chr4_3:60771059-60771078 Msa0652980:CDS 50.0%
GTCCTAGTAGTTGGCAACCA+AGG - chr4_3:60771081-60771100 Msa0652980:CDS 50.0%
CTCCTTGGTTGCCAACTACT+AGG + chr4_3:60771086-60771105 None:intergenic 50.0%
TTCTCCCCAGCAACTGTTGG+TGG + chr4_3:60770771-60770790 None:intergenic 55.0%
ACGTTCTCCCCAGCAACTGT+TGG + chr4_3:60770774-60770793 None:intergenic 55.0%
AACAGTTGCTGGGGAGAACG+TGG - chr4_3:60770773-60770792 Msa0652980:CDS 55.0%
TTGCTGGGGAGAACGTGGTT+TGG - chr4_3:60770778-60770797 Msa0652980:CDS 55.0%
TGGCAGGAGGTCCTAGTAGT+TGG - chr4_3:60771072-60771091 Msa0652980:CDS 55.0%
TTCTCCCCAGCAACTGTTGG+TGG + chr4_3:60770771-60770790 None:intergenic 55.0%
ACGTTCTCCCCAGCAACTGT+TGG + chr4_3:60770774-60770793 None:intergenic 55.0%
AACAGTTGCTGGGGAGAACG+TGG - chr4_3:60770773-60770792 Msa0652980:CDS 55.0%
TTGCTGGGGAGAACGTGGTT+TGG - chr4_3:60770778-60770797 Msa0652980:CDS 55.0%
TGGCAGGAGGTCCTAGTAGT+TGG - chr4_3:60771072-60771091 Msa0652980:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60770276 60771115 60770276 ID=Msa0652980;Name=Msa0652980
chr4_3 mRNA 60770276 60771115 60770276 ID=Msa0652980-mRNA-1;Parent=Msa0652980;Name=Msa0652980-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|279
chr4_3 exon 60770276 60771115 60770276 ID=Msa0652980-mRNA-1:exon:16548;Parent=Msa0652980-mRNA-1
chr4_3 CDS 60770276 60771115 60770276 ID=Msa0652980-mRNA-1:cds;Parent=Msa0652980-mRNA-1
Gene Sequence

>Msa0652980

ATGCCATTCTTTCTCCTCAAGAACTCTTTGGGAGCCAAGATGAAGAAAGGCATAAGAACTTTCTGCAACACTGATGTGTCAACCTCAACTCTAAACCAACAAAATAGTACTATTGGCAATGGCATTGGCAACCATAGCCAAGTTGACATCACAAGCAGCAAGGTAAGCTCCCCTTTTTTGCAATGTGACAACTCAAATTCAAAGCAAAGCACACCAACATTAGAAGATCTTATACTACAATTAGAAATGGAGGAAGAGATGGCAAGGAAAGAAAAACTCAATGAATATAGTGGAATAAGGGGAAGGATGTCATGTGTTAACAACTCTGACATATTAAGATCTGCAAGGAATGCTTTGAATCAATATCCAAGGTTTTCACTTGATGGAAGAGATTCCATGTATAGGTCATCTTTTGGGACTATAGAAGGAAGAAGATCAGTTTGTAGTGAGATAAGTTTAGAACCAAAGCTTGATGAAAAGGTTATGTGTTTTCCACCAACAGTTGCTGGGGAGAACGTGGTTTGGTGTAAACCTGGTGTTGTGGCAAAGTTAATGGGTTTGGAAGCTATTCCAGTGTCAGTAGGTAGAAAAAGATCTGACAAAAAAGAGAGGATGAGTAGTGTTGATTGTAGGAGACAAAATATAAGAAGGAGGCCATTTGAGAGGCATGATTTGGAGAGAAAACTAGCAATGGACATGCAGGGTTATCGTGATCACATTGTTAGAAGAAGAAATAGGTCTGGTTTTTGCTCTAAAAATGGATATTGTATTATGAAACCGGTTTCTCTAGAAGCTATGGCAGGAGGTCCTAGTAGTTGGCAACCAAGGAGATATGTTTAG

Protein sequence

>Msa0652980

MPFFLLKNSLGAKMKKGIRTFCNTDVSTSTLNQQNSTIGNGIGNHSQVDITSSKVSSPFLQCDNSNSKQSTPTLEDLILQLEMEEEMARKEKLNEYSGIRGRMSCVNNSDILRSARNALNQYPRFSLDGRDSMYRSSFGTIEGRRSVCSEISLEPKLDEKVMCFPPTVAGENVVWCKPGVVAKLMGLEAIPVSVGRKRSDKKERMSSVDCRRQNIRRRPFERHDLERKLAMDMQGYRDHIVRRRNRSGFCSKNGYCIMKPVSLEAMAGGPSSWQPRRYV*