Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976820 | XP_003603899.1 | 96.774 | 310 | 7 | 3 | 1 | 310 | 1 | 307 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976820 | sp|D2CZZ9|BNM2C_BRANA | 41.137 | 299 | 138 | 5 | 12 | 304 | 13 | 279 | 1.16e-74 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976820 | G7J6J1 | 96.774 | 310 | 7 | 3 | 1 | 310 | 1 | 307 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0624700 | Msa0976820 | -0.812065 | 5.113306e-51 | -8.615850e-47 |
| Msa0762860 | Msa0976820 | -0.806932 | 6.470721e-50 | -8.615850e-47 |
| Msa0172380 | Msa0976820 | 0.811629 | 6.361774e-51 | -8.615850e-47 |
| Msa0515730 | Msa0976820 | -0.816487 | 5.391923e-52 | -8.615850e-47 |
| Msa0842660 | Msa0976820 | -0.818602 | 1.799383e-52 | -8.615850e-47 |
| Msa0875070 | Msa0976820 | 0.829045 | 6.411160e-55 | -8.615850e-47 |
| Msa0940130 | Msa0976820 | 0.924901 | 3.786880e-90 | -8.615850e-47 |
| Msa0940320 | Msa0976820 | 0.885076 | 1.110441e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976820 | MtrunA17_Chr3g0144421 | 96.774 | 310 | 7 | 3 | 1 | 310 | 1 | 307 | 0.0 | 613 |
| Msa0976820 | MtrunA17_Chr3g0144451 | 54.911 | 224 | 100 | 1 | 83 | 305 | 52 | 275 | 7.62e-91 | 272 |
| Msa0976820 | MtrunA17_Chr4g0034821 | 54.464 | 224 | 101 | 1 | 83 | 305 | 68 | 291 | 2.90e-89 | 268 |
| Msa0976820 | MtrunA17_Chr3g0138231 | 51.852 | 243 | 111 | 3 | 69 | 305 | 24 | 266 | 2.76e-87 | 262 |
| Msa0976820 | MtrunA17_Chr4g0034451 | 45.415 | 229 | 119 | 4 | 80 | 305 | 301 | 526 | 2.02e-65 | 214 |
| Msa0976820 | MtrunA17_Chr4g0034731 | 43.636 | 220 | 118 | 4 | 90 | 306 | 217 | 433 | 4.07e-63 | 206 |
| Msa0976820 | MtrunA17_Chr3g0144411 | 42.466 | 219 | 122 | 2 | 89 | 306 | 324 | 539 | 1.47e-62 | 207 |
| Msa0976820 | MtrunA17_Chr3g0144391 | 41.096 | 219 | 125 | 2 | 89 | 306 | 291 | 506 | 2.93e-62 | 205 |
| Msa0976820 | MtrunA17_Chr1g0147271 | 43.243 | 222 | 120 | 4 | 85 | 304 | 166 | 383 | 4.19e-58 | 191 |
| Msa0976820 | MtrunA17_Chr4g0034721 | 44.091 | 220 | 117 | 4 | 90 | 306 | 361 | 577 | 8.64e-58 | 195 |
| Msa0976820 | MtrunA17_Chr4g0034691 | 43.182 | 220 | 119 | 4 | 90 | 306 | 493 | 709 | 1.20e-56 | 194 |
| Msa0976820 | MtrunA17_Chr1g0147321 | 41.704 | 223 | 121 | 5 | 87 | 307 | 24 | 239 | 1.20e-54 | 178 |
| Msa0976820 | MtrunA17_Chr3g0139431 | 42.478 | 226 | 121 | 6 | 84 | 305 | 101 | 321 | 3.64e-54 | 179 |
| Msa0976820 | MtrunA17_Chr1g0147301 | 41.629 | 221 | 122 | 5 | 87 | 304 | 67 | 283 | 8.85e-54 | 177 |
| Msa0976820 | MtrunA17_Chr1g0147291 | 41.818 | 220 | 119 | 5 | 87 | 304 | 53 | 265 | 2.08e-53 | 176 |
| Msa0976820 | MtrunA17_Chr1g0147331 | 42.601 | 223 | 118 | 7 | 85 | 304 | 108 | 323 | 9.65e-53 | 176 |
| Msa0976820 | MtrunA17_Chr1g0147311 | 42.105 | 228 | 123 | 6 | 82 | 304 | 131 | 354 | 2.55e-52 | 175 |
| Msa0976820 | MtrunA17_Chr1g0146631 | 42.152 | 223 | 119 | 7 | 85 | 304 | 108 | 323 | 3.30e-52 | 174 |
| Msa0976820 | MtrunA17_Chr1g0147261 | 42.202 | 218 | 119 | 5 | 87 | 303 | 86 | 297 | 7.69e-52 | 172 |
| Msa0976820 | MtrunA17_Chr1g0147251 | 40.826 | 218 | 119 | 5 | 87 | 303 | 32 | 240 | 2.05e-49 | 164 |
| Msa0976820 | MtrunA17_Chr1g0147241 | 39.474 | 228 | 128 | 5 | 77 | 303 | 92 | 310 | 2.64e-49 | 166 |
| Msa0976820 | MtrunA17_Chr6g0485051 | 40.000 | 195 | 113 | 4 | 115 | 305 | 11 | 205 | 7.73e-48 | 159 |
| Msa0976820 | MtrunA17_Chr5g0413591 | 31.579 | 247 | 158 | 4 | 59 | 304 | 391 | 627 | 1.21e-29 | 118 |
| Msa0976820 | MtrunA17_Chr8g0365361 | 31.336 | 217 | 143 | 4 | 90 | 304 | 181 | 393 | 6.89e-29 | 114 |
| Msa0976820 | MtrunA17_Chr8g0365381 | 31.944 | 216 | 141 | 4 | 90 | 303 | 429 | 640 | 7.45e-28 | 113 |
| Msa0976820 | MtrunA17_Chr8g0365401 | 33.180 | 217 | 139 | 5 | 90 | 304 | 412 | 624 | 5.86e-27 | 110 |
| Msa0976820 | MtrunA17_Chr3g0117791 | 32.258 | 217 | 141 | 4 | 90 | 304 | 413 | 625 | 6.22e-27 | 110 |
| Msa0976820 | MtrunA17_Chr5g0412981 | 30.734 | 218 | 145 | 5 | 88 | 303 | 195 | 408 | 2.11e-25 | 105 |
| Msa0976820 | MtrunA17_Chr5g0412981 | 30.387 | 181 | 121 | 4 | 109 | 287 | 7 | 184 | 7.89e-19 | 86.3 |
| Msa0976820 | MtrunA17_Chr5g0412991 | 30.734 | 218 | 145 | 5 | 88 | 303 | 195 | 408 | 2.27e-25 | 104 |
| Msa0976820 | MtrunA17_Chr5g0412991 | 30.387 | 181 | 121 | 4 | 109 | 287 | 7 | 184 | 6.16e-19 | 86.7 |
| Msa0976820 | MtrunA17_Chr5g0412951 | 29.949 | 197 | 133 | 4 | 109 | 303 | 14 | 207 | 3.31e-23 | 95.1 |
| Msa0976820 | MtrunA17_Chr4g0034051 | 47.500 | 80 | 40 | 2 | 229 | 306 | 1 | 80 | 7.97e-22 | 87.8 |
| Msa0976820 | MtrunA17_Chr4g0076231 | 33.333 | 156 | 100 | 3 | 150 | 303 | 3 | 156 | 2.65e-21 | 88.6 |
| Msa0976820 | MtrunA17_Chr8g0355861 | 37.143 | 140 | 79 | 5 | 166 | 305 | 130 | 260 | 4.56e-21 | 90.9 |
| Msa0976820 | MtrunA17_Chr8g0355331 | 32.948 | 173 | 100 | 6 | 133 | 305 | 265 | 421 | 6.68e-21 | 92.4 |
| Msa0976820 | MtrunA17_Chr8g0355311 | 35.714 | 140 | 81 | 5 | 166 | 305 | 60 | 190 | 2.54e-20 | 87.0 |
| Msa0976820 | MtrunA17_Chr8g0355841 | 39.286 | 140 | 76 | 5 | 166 | 305 | 379 | 509 | 1.39e-19 | 89.0 |
| Msa0976820 | MtrunA17_Chr8g0355321 | 35.000 | 140 | 82 | 5 | 166 | 305 | 172 | 302 | 5.18e-19 | 85.5 |
| Msa0976820 | MtrunA17_Chr2g0318901 | 33.333 | 141 | 85 | 5 | 165 | 305 | 128 | 259 | 1.71e-18 | 83.6 |
| Msa0976820 | MtrunA17_Chr8g0355831 | 38.571 | 140 | 77 | 5 | 166 | 305 | 221 | 351 | 3.44e-18 | 84.0 |
| Msa0976820 | MtrunA17_Chr8g0355871 | 34.416 | 154 | 91 | 6 | 154 | 306 | 79 | 223 | 3.52e-18 | 82.0 |
| Msa0976820 | MtrunA17_Chr1g0168781 | 32.653 | 147 | 91 | 5 | 159 | 305 | 121 | 259 | 8.73e-18 | 81.6 |
| Msa0976820 | MtrunA17_Chr2g0318871 | 28.899 | 218 | 122 | 9 | 90 | 305 | 73 | 259 | 8.01e-17 | 79.0 |
| Msa0976820 | MtrunA17_Chr8g0371951 | 38.824 | 85 | 49 | 2 | 212 | 294 | 4 | 87 | 2.46e-14 | 67.4 |
| Msa0976820 | MtrunA17_Chr5g0413021 | 29.032 | 124 | 84 | 3 | 181 | 303 | 7 | 127 | 4.35e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976820 | AT1G49320.1 | 48.899 | 227 | 110 | 3 | 84 | 304 | 52 | 278 | 2.09e-72 | 225 |
| Msa0976820 | AT5G25610.1 | 42.857 | 224 | 120 | 5 | 84 | 303 | 170 | 389 | 1.76e-55 | 185 |
| Msa0976820 | AT1G70370.2 | 32.883 | 222 | 133 | 6 | 90 | 304 | 411 | 623 | 2.88e-25 | 106 |
| Msa0976820 | AT1G70370.1 | 32.883 | 222 | 133 | 6 | 90 | 304 | 411 | 623 | 2.88e-25 | 106 |
| Msa0976820 | AT1G23760.1 | 32.432 | 222 | 134 | 7 | 90 | 304 | 407 | 619 | 5.64e-24 | 102 |
| Msa0976820 | AT1G60390.1 | 30.357 | 224 | 142 | 5 | 86 | 303 | 405 | 620 | 4.42e-23 | 99.8 |
Find 64 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACATGGATACTTCTAAA+TGG | 0.212561 | 6_4:-11048459 | Msa0976820:CDS |
| TTTCTTCCCTCCTGATAATC+TGG | 0.262557 | 6_4:-11048374 | Msa0976820:CDS |
| AAACTAGGGAGTTGATTAAT+TGG | 0.264198 | 6_4:+11049440 | None:intergenic |
| CCCTCCTGATAATCTGGTTT+GGG | 0.294778 | 6_4:-11048368 | Msa0976820:CDS |
| GACTTTGCAAATTACATGTT+TGG | 0.295983 | 6_4:-11048718 | Msa0976820:CDS |
| CCGTAAGGGAAAGGAATATA+AGG | 0.308964 | 6_4:+11049402 | None:intergenic |
| ATTAATTGGATGTAGGTCTA+AGG | 0.311404 | 6_4:+11049454 | None:intergenic |
| TCCCTCCTGATAATCTGGTT+TGG | 0.315373 | 6_4:-11048369 | Msa0976820:CDS |
| ATTTCAGTTCCAAATGCAAT+AGG | 0.315492 | 6_4:-11048604 | Msa0976820:CDS |
| TAGAAAGATAACTATAATTA+AGG | 0.316435 | 6_4:-11049178 | Msa0976820:CDS |
| AGCAGTTGATGAATCTTTCT+TGG | 0.317340 | 6_4:+11048936 | None:intergenic |
| GTTCCAAAGGATTTAAAAGT+TGG | 0.342461 | 6_4:-11048982 | Msa0976820:CDS |
| GGTACCCAAACCAGATTATC+AGG | 0.365529 | 6_4:+11048364 | None:intergenic |
| AAGTGTGTATTTCATGGCTT+TGG | 0.373004 | 6_4:+11048810 | None:intergenic |
| TTGTTCAAGTGTGTATTTCA+TGG | 0.375445 | 6_4:+11048804 | None:intergenic |
| TACTACAATTTCATACAAAC+TGG | 0.390862 | 6_4:+11048522 | None:intergenic |
| TTGTATGAAATTGTAGTAGA+AGG | 0.391678 | 6_4:-11048517 | Msa0976820:CDS |
| ATTGTAGTAGAAGGTGAAAA+TGG | 0.391681 | 6_4:-11048508 | Msa0976820:CDS |
| CCTTATATTCCTTTCCCTTA+CGG | 0.393008 | 6_4:-11049402 | Msa0976820:five_prime_UTR |
| TGCTATTCACATGGGAAACT+TGG | 0.395953 | 6_4:+11049480 | None:intergenic |
| AAATTGTGTAATTCTGTAAA+GGG | 0.399598 | 6_4:+11048641 | None:intergenic |
| TGACATACTGGAGAGTTTCC+AGG | 0.407905 | 6_4:+11048397 | None:intergenic |
| AAAAGACTAGTAGGGTATAT+AGG | 0.408467 | 6_4:+11049324 | None:intergenic |
| AAAGTCAAACAAAGACTCTA+AGG | 0.413155 | 6_4:+11048735 | None:intergenic |
| TGACAATAGAAAACTGCAAA+AGG | 0.418592 | 6_4:+11048562 | None:intergenic |
| ACAAACTGGTATCACCCTTC+TGG | 0.421146 | 6_4:+11048536 | None:intergenic |
| GTGGAGTGTGTAGGAAAACT+AGG | 0.427800 | 6_4:+11049425 | None:intergenic |
| GAAATTGTGTAATTCTGTAA+AGG | 0.428701 | 6_4:+11048640 | None:intergenic |
| GGGTGACACCCTATTGCATT+TGG | 0.430364 | 6_4:+11048595 | None:intergenic |
| AGATGGAGAAGAAATCTAGA+AGG | 0.448342 | 6_4:+11048851 | None:intergenic |
| TCACATGGATACTTCTAAAT+GGG | 0.449148 | 6_4:-11048458 | Msa0976820:CDS |
| TTTCAGTTCCAAATGCAATA+GGG | 0.450082 | 6_4:-11048603 | Msa0976820:CDS |
| TATTTCATGGCTTTGGCTTG+TGG | 0.464005 | 6_4:+11048817 | None:intergenic |
| GAGAAGAAATCTAGAAGGAA+AGG | 0.485932 | 6_4:+11048856 | None:intergenic |
| GGAGTTGATTAATTGGATGT+AGG | 0.488259 | 6_4:+11049447 | None:intergenic |
| CGTGTGCTTAATGTAAAACC+TGG | 0.488283 | 6_4:-11048415 | Msa0976820:CDS |
| GGAGGGAAGAAATGACATAC+TGG | 0.503691 | 6_4:+11048385 | None:intergenic |
| TTAATTGGATGTAGGTCTAA+GGG | 0.509791 | 6_4:+11049455 | None:intergenic |
| CTGCAAAAGGGTAAGGCATA+GGG | 0.513892 | 6_4:+11048575 | None:intergenic |
| TGGAGTGTGTAGGAAAACTA+GGG | 0.514055 | 6_4:+11049426 | None:intergenic |
| TGTAAGCTGTTGCAAATCAT+AGG | 0.524928 | 6_4:+11049149 | None:intergenic |
| TCTAGTAAATAATAGTATCA+TGG | 0.525126 | 6_4:-11049115 | Msa0976820:CDS |
| TAGAAAACTGCAAAAGGGTA+AGG | 0.531191 | 6_4:+11048568 | None:intergenic |
| TGTTATGGTGTTGCAGTCAA+AGG | 0.531934 | 6_4:+11048343 | None:intergenic |
| TTGTAGGTTCCGTAAGGGAA+AGG | 0.532944 | 6_4:+11049393 | None:intergenic |
| GACAATAGAAAACTGCAAAA+GGG | 0.537400 | 6_4:+11048563 | None:intergenic |
| CTAAGGGGTTGCTATTCACA+TGG | 0.558604 | 6_4:+11049471 | None:intergenic |
| AATATAAGGGTGGAGTGTGT+AGG | 0.560507 | 6_4:+11049416 | None:intergenic |
| ACTGCAAAAGGGTAAGGCAT+AGG | 0.564319 | 6_4:+11048574 | None:intergenic |
| AGCTGCAGCAATTTGTCACA+TGG | 0.567177 | 6_4:-11048473 | Msa0976820:CDS |
| TTTCTATTGTCACAGCCAGA+AGG | 0.572783 | 6_4:-11048551 | Msa0976820:CDS |
| GTAATTCTGTAAAGGGAGAG+AGG | 0.580516 | 6_4:+11048648 | None:intergenic |
| CGTAAGGGAAAGGAATATAA+GGG | 0.583432 | 6_4:+11049403 | None:intergenic |
| CAACAGCTTACAACAGAAGA+GGG | 0.584548 | 6_4:-11049138 | Msa0976820:CDS |
| GCAACAGCTTACAACAGAAG+AGG | 0.592350 | 6_4:-11049139 | Msa0976820:CDS |
| TTCTATTGTCACAGCCAGAA+GGG | 0.596892 | 6_4:-11048550 | Msa0976820:CDS |
| TGCAACACCATAACAAGTTG+TGG | 0.599848 | 6_4:-11048335 | None:intergenic |
| TTTGTTTGTAGGTTCCGTAA+GGG | 0.602691 | 6_4:+11049388 | None:intergenic |
| TAATTGGATGTAGGTCTAAG+GGG | 0.616446 | 6_4:+11049456 | None:intergenic |
| GTAGTAGAAGGTGAAAATGG+AGG | 0.623165 | 6_4:-11048505 | Msa0976820:CDS |
| CCCAAACCAGATTATCAGGA+GGG | 0.635022 | 6_4:+11048368 | None:intergenic |
| ACCCAAACCAGATTATCAGG+AGG | 0.670148 | 6_4:+11048367 | None:intergenic |
| TAAGGGGTTGCTATTCACAT+GGG | 0.675323 | 6_4:+11049472 | None:intergenic |
| AAGGGAAAGGAATATAAGGG+TGG | 0.701614 | 6_4:+11049406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTCTCTTTTATGAT+TGG | - | chr6_4:11048587-11048606 | Msa0976820:CDS | 15.0% |
| !! | TAGAAAGATAACTATAATTA+AGG | - | chr6_4:11048638-11048657 | Msa0976820:CDS | 15.0% |
| !!! | TAATTTTTCTCTTTTATGAT+TGG | - | chr6_4:11048587-11048606 | Msa0976820:CDS | 15.0% |
| !! | TAGAAAGATAACTATAATTA+AGG | - | chr6_4:11048638-11048657 | Msa0976820:CDS | 15.0% |
| !! | TCTAGTAAATAATAGTATCA+TGG | - | chr6_4:11048701-11048720 | Msa0976820:CDS | 20.0% |
| !! | TCTTTCTTGGAAAAATAAAT+TGG | + | chr6_4:11048870-11048889 | None:intergenic | 20.0% |
| !!! | AAAACTTTGAATTTTGAGTT+GGG | + | chr6_4:11049125-11049144 | None:intergenic | 20.0% |
| !! | AAATTGTGTAATTCTGTAAA+GGG | + | chr6_4:11049178-11049197 | None:intergenic | 20.0% |
| !! | TCTAGTAAATAATAGTATCA+TGG | - | chr6_4:11048701-11048720 | Msa0976820:CDS | 20.0% |
| !! | TCTTTCTTGGAAAAATAAAT+TGG | + | chr6_4:11048870-11048889 | None:intergenic | 20.0% |
| !!! | AAAACTTTGAATTTTGAGTT+GGG | + | chr6_4:11049125-11049144 | None:intergenic | 20.0% |
| !! | AAATTGTGTAATTCTGTAAA+GGG | + | chr6_4:11049178-11049197 | None:intergenic | 20.0% |
| ! | ACAGAAAAAGATGATTTCAA+AGG | - | chr6_4:11048767-11048786 | Msa0976820:CDS | 25.0% |
| !! | TTTCCAACTTTTAAATCCTT+TGG | + | chr6_4:11048840-11048859 | None:intergenic | 25.0% |
| !!! | ATTTTGTTAGCTTCTTCTTT+TGG | + | chr6_4:11048918-11048937 | None:intergenic | 25.0% |
| !!! | CAAAACTTTGAATTTTGAGT+TGG | + | chr6_4:11049126-11049145 | None:intergenic | 25.0% |
| ! | GAAATTGTGTAATTCTGTAA+AGG | + | chr6_4:11049179-11049198 | None:intergenic | 25.0% |
| ! | TACTACAATTTCATACAAAC+TGG | + | chr6_4:11049297-11049316 | None:intergenic | 25.0% |
| ! | TTGTATGAAATTGTAGTAGA+AGG | - | chr6_4:11049299-11049318 | Msa0976820:intron | 25.0% |
| ! | ACAGAAAAAGATGATTTCAA+AGG | - | chr6_4:11048767-11048786 | Msa0976820:CDS | 25.0% |
| !! | TTTCCAACTTTTAAATCCTT+TGG | + | chr6_4:11048840-11048859 | None:intergenic | 25.0% |
| !!! | ATTTTGTTAGCTTCTTCTTT+TGG | + | chr6_4:11048918-11048937 | None:intergenic | 25.0% |
| !!! | CAAAACTTTGAATTTTGAGT+TGG | + | chr6_4:11049126-11049145 | None:intergenic | 25.0% |
| ! | GAAATTGTGTAATTCTGTAA+AGG | + | chr6_4:11049179-11049198 | None:intergenic | 25.0% |
| ! | TACTACAATTTCATACAAAC+TGG | + | chr6_4:11049297-11049316 | None:intergenic | 25.0% |
| ! | TTGTATGAAATTGTAGTAGA+AGG | - | chr6_4:11049299-11049318 | Msa0976820:intron | 25.0% |
| TTAATTGGATGTAGGTCTAA+GGG | + | chr6_4:11048364-11048383 | None:intergenic | 30.0% | |
| ATTAATTGGATGTAGGTCTA+AGG | + | chr6_4:11048365-11048384 | None:intergenic | 30.0% | |
| ! | AAACTAGGGAGTTGATTAAT+TGG | + | chr6_4:11048379-11048398 | None:intergenic | 30.0% |
| !!! | ATTTCTCGTGTTTTGTTTGT+AGG | + | chr6_4:11048442-11048461 | None:intergenic | 30.0% |
| ! | TGAGACTTTTAATCTCTTCT+TGG | - | chr6_4:11048461-11048480 | Msa0976820:CDS | 30.0% |
| AAAAGACTAGTAGGGTATAT+AGG | + | chr6_4:11048495-11048514 | None:intergenic | 30.0% | |
| !!! | ATATACCCTACTAGTCTTTT+TGG | - | chr6_4:11048495-11048514 | Msa0976820:CDS | 30.0% |
| TCTTACCAAAAAGACTAGTA+GGG | + | chr6_4:11048503-11048522 | None:intergenic | 30.0% | |
| ATCTTACCAAAAAGACTAGT+AGG | + | chr6_4:11048504-11048523 | None:intergenic | 30.0% | |
| GTTCCAAAGGATTTAAAAGT+TGG | - | chr6_4:11048834-11048853 | Msa0976820:CDS | 30.0% | |
| ! | TCTTCTTTTGGTAGGAATTT+TGG | + | chr6_4:11048906-11048925 | None:intergenic | 30.0% |
| !!! | AGAAGGAAAGGTAGTTTTTT+TGG | + | chr6_4:11048951-11048970 | None:intergenic | 30.0% |
| !!! | TTGTGGAGATTTTTTTGAGA+TGG | + | chr6_4:11048985-11049004 | None:intergenic | 30.0% |
| TTGTTCAAGTGTGTATTTCA+TGG | + | chr6_4:11049015-11049034 | None:intergenic | 30.0% | |
| ! | ACAATGCAATTTTGAACCTA+TGG | - | chr6_4:11049031-11049050 | Msa0976820:CDS | 30.0% |
| AAAGTCAAACAAAGACTCTA+AGG | + | chr6_4:11049084-11049103 | None:intergenic | 30.0% | |
| GACTTTGCAAATTACATGTT+TGG | - | chr6_4:11049098-11049117 | Msa0976820:CDS | 30.0% | |
| ATTTCAGTTCCAAATGCAAT+AGG | - | chr6_4:11049212-11049231 | Msa0976820:intron | 30.0% | |
| TTTCAGTTCCAAATGCAATA+GGG | - | chr6_4:11049213-11049232 | Msa0976820:intron | 30.0% | |
| GACAATAGAAAACTGCAAAA+GGG | + | chr6_4:11049256-11049275 | None:intergenic | 30.0% | |
| TGACAATAGAAAACTGCAAA+AGG | + | chr6_4:11049257-11049276 | None:intergenic | 30.0% | |
| ATTGTAGTAGAAGGTGAAAA+TGG | - | chr6_4:11049308-11049327 | Msa0976820:intron | 30.0% | |
| TCACATGGATACTTCTAAAT+GGG | - | chr6_4:11049358-11049377 | Msa0976820:CDS | 30.0% | |
| ! | TTTTACATTAAGCACACGAA+AGG | + | chr6_4:11049399-11049418 | None:intergenic | 30.0% |
| TTAATTGGATGTAGGTCTAA+GGG | + | chr6_4:11048364-11048383 | None:intergenic | 30.0% | |
| ATTAATTGGATGTAGGTCTA+AGG | + | chr6_4:11048365-11048384 | None:intergenic | 30.0% | |
| ! | AAACTAGGGAGTTGATTAAT+TGG | + | chr6_4:11048379-11048398 | None:intergenic | 30.0% |
| !!! | ATTTCTCGTGTTTTGTTTGT+AGG | + | chr6_4:11048442-11048461 | None:intergenic | 30.0% |
| ! | TGAGACTTTTAATCTCTTCT+TGG | - | chr6_4:11048461-11048480 | Msa0976820:CDS | 30.0% |
| AAAAGACTAGTAGGGTATAT+AGG | + | chr6_4:11048495-11048514 | None:intergenic | 30.0% | |
| !!! | ATATACCCTACTAGTCTTTT+TGG | - | chr6_4:11048495-11048514 | Msa0976820:CDS | 30.0% |
| TCTTACCAAAAAGACTAGTA+GGG | + | chr6_4:11048503-11048522 | None:intergenic | 30.0% | |
| ATCTTACCAAAAAGACTAGT+AGG | + | chr6_4:11048504-11048523 | None:intergenic | 30.0% | |
| GTTCCAAAGGATTTAAAAGT+TGG | - | chr6_4:11048834-11048853 | Msa0976820:CDS | 30.0% | |
| ! | TCTTCTTTTGGTAGGAATTT+TGG | + | chr6_4:11048906-11048925 | None:intergenic | 30.0% |
| !!! | AGAAGGAAAGGTAGTTTTTT+TGG | + | chr6_4:11048951-11048970 | None:intergenic | 30.0% |
| !!! | TTGTGGAGATTTTTTTGAGA+TGG | + | chr6_4:11048985-11049004 | None:intergenic | 30.0% |
| TTGTTCAAGTGTGTATTTCA+TGG | + | chr6_4:11049015-11049034 | None:intergenic | 30.0% | |
| ! | ACAATGCAATTTTGAACCTA+TGG | - | chr6_4:11049031-11049050 | Msa0976820:CDS | 30.0% |
| AAAGTCAAACAAAGACTCTA+AGG | + | chr6_4:11049084-11049103 | None:intergenic | 30.0% | |
| GACTTTGCAAATTACATGTT+TGG | - | chr6_4:11049098-11049117 | Msa0976820:CDS | 30.0% | |
| ATTTCAGTTCCAAATGCAAT+AGG | - | chr6_4:11049212-11049231 | Msa0976820:intron | 30.0% | |
| TTTCAGTTCCAAATGCAATA+GGG | - | chr6_4:11049213-11049232 | Msa0976820:intron | 30.0% | |
| GACAATAGAAAACTGCAAAA+GGG | + | chr6_4:11049256-11049275 | None:intergenic | 30.0% | |
| TGACAATAGAAAACTGCAAA+AGG | + | chr6_4:11049257-11049276 | None:intergenic | 30.0% | |
| ATTGTAGTAGAAGGTGAAAA+TGG | - | chr6_4:11049308-11049327 | Msa0976820:intron | 30.0% | |
| TCACATGGATACTTCTAAAT+GGG | - | chr6_4:11049358-11049377 | Msa0976820:CDS | 30.0% | |
| ! | TTTTACATTAAGCACACGAA+AGG | + | chr6_4:11049399-11049418 | None:intergenic | 30.0% |
| TAATTGGATGTAGGTCTAAG+GGG | + | chr6_4:11048363-11048382 | None:intergenic | 35.0% | |
| ! | GGAGTTGATTAATTGGATGT+AGG | + | chr6_4:11048372-11048391 | None:intergenic | 35.0% |
| CGTAAGGGAAAGGAATATAA+GGG | + | chr6_4:11048416-11048435 | None:intergenic | 35.0% | |
| CCTTATATTCCTTTCCCTTA+CGG | - | chr6_4:11048414-11048433 | Msa0976820:CDS | 35.0% | |
| TTTGTTTGTAGGTTCCGTAA+GGG | + | chr6_4:11048431-11048450 | None:intergenic | 35.0% | |
| !! | TTTTGTTTGTAGGTTCCGTA+AGG | + | chr6_4:11048432-11048451 | None:intergenic | 35.0% |
| TGTAAGCTGTTGCAAATCAT+AGG | + | chr6_4:11048670-11048689 | None:intergenic | 35.0% | |
| CGAAAAACACGTTCAATTCA+GGG | + | chr6_4:11048815-11048834 | None:intergenic | 35.0% | |
| ACGAAAAACACGTTCAATTC+AGG | + | chr6_4:11048816-11048835 | None:intergenic | 35.0% | |
| !! | AGCAGTTGATGAATCTTTCT+TGG | + | chr6_4:11048883-11048902 | None:intergenic | 35.0% |
| !! | TGTTAGCTTCTTCTTTTGGT+AGG | + | chr6_4:11048914-11048933 | None:intergenic | 35.0% |
| !!! | GGTAGTTTTTTTGGTGTGAA+AGG | + | chr6_4:11048942-11048961 | None:intergenic | 35.0% |
| GAGAAGAAATCTAGAAGGAA+AGG | + | chr6_4:11048963-11048982 | None:intergenic | 35.0% | |
| AGATGGAGAAGAAATCTAGA+AGG | + | chr6_4:11048968-11048987 | None:intergenic | 35.0% | |
| AAGTGTGTATTTCATGGCTT+TGG | + | chr6_4:11049009-11049028 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGAACCTATGGA+AGG | - | chr6_4:11049035-11049054 | Msa0976820:CDS | 35.0% |
| ! | AATTTTGTCTCTCCTTCCAT+AGG | + | chr6_4:11049050-11049069 | None:intergenic | 35.0% |
| TAGAAAACTGCAAAAGGGTA+AGG | + | chr6_4:11049251-11049270 | None:intergenic | 35.0% | |
| GTCACATGGATACTTCTAAA+TGG | - | chr6_4:11049357-11049376 | Msa0976820:CDS | 35.0% | |
| TAATTGGATGTAGGTCTAAG+GGG | + | chr6_4:11048363-11048382 | None:intergenic | 35.0% | |
| ! | GGAGTTGATTAATTGGATGT+AGG | + | chr6_4:11048372-11048391 | None:intergenic | 35.0% |
| CGTAAGGGAAAGGAATATAA+GGG | + | chr6_4:11048416-11048435 | None:intergenic | 35.0% | |
| CCTTATATTCCTTTCCCTTA+CGG | - | chr6_4:11048414-11048433 | Msa0976820:CDS | 35.0% | |
| TTTGTTTGTAGGTTCCGTAA+GGG | + | chr6_4:11048431-11048450 | None:intergenic | 35.0% | |
| !! | TTTTGTTTGTAGGTTCCGTA+AGG | + | chr6_4:11048432-11048451 | None:intergenic | 35.0% |
| TGTAAGCTGTTGCAAATCAT+AGG | + | chr6_4:11048670-11048689 | None:intergenic | 35.0% | |
| CGAAAAACACGTTCAATTCA+GGG | + | chr6_4:11048815-11048834 | None:intergenic | 35.0% | |
| ACGAAAAACACGTTCAATTC+AGG | + | chr6_4:11048816-11048835 | None:intergenic | 35.0% | |
| !! | AGCAGTTGATGAATCTTTCT+TGG | + | chr6_4:11048883-11048902 | None:intergenic | 35.0% |
| !! | TGTTAGCTTCTTCTTTTGGT+AGG | + | chr6_4:11048914-11048933 | None:intergenic | 35.0% |
| !!! | GGTAGTTTTTTTGGTGTGAA+AGG | + | chr6_4:11048942-11048961 | None:intergenic | 35.0% |
| GAGAAGAAATCTAGAAGGAA+AGG | + | chr6_4:11048963-11048982 | None:intergenic | 35.0% | |
| AGATGGAGAAGAAATCTAGA+AGG | + | chr6_4:11048968-11048987 | None:intergenic | 35.0% | |
| AAGTGTGTATTTCATGGCTT+TGG | + | chr6_4:11049009-11049028 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGAACCTATGGA+AGG | - | chr6_4:11049035-11049054 | Msa0976820:CDS | 35.0% |
| ! | AATTTTGTCTCTCCTTCCAT+AGG | + | chr6_4:11049050-11049069 | None:intergenic | 35.0% |
| TAGAAAACTGCAAAAGGGTA+AGG | + | chr6_4:11049251-11049270 | None:intergenic | 35.0% | |
| GTCACATGGATACTTCTAAA+TGG | - | chr6_4:11049357-11049376 | Msa0976820:CDS | 35.0% | |
| TGCTATTCACATGGGAAACT+TGG | + | chr6_4:11048339-11048358 | None:intergenic | 40.0% | |
| ! | TAAGGGGTTGCTATTCACAT+GGG | + | chr6_4:11048347-11048366 | None:intergenic | 40.0% |
| TGGAGTGTGTAGGAAAACTA+GGG | + | chr6_4:11048393-11048412 | None:intergenic | 40.0% | |
| AATATAAGGGTGGAGTGTGT+AGG | + | chr6_4:11048403-11048422 | None:intergenic | 40.0% | |
| AAGGGAAAGGAATATAAGGG+TGG | + | chr6_4:11048413-11048432 | None:intergenic | 40.0% | |
| CCGTAAGGGAAAGGAATATA+AGG | + | chr6_4:11048417-11048436 | None:intergenic | 40.0% | |
| CAACAGCTTACAACAGAAGA+GGG | - | chr6_4:11048678-11048697 | Msa0976820:CDS | 40.0% | |
| ! | GAACGTGTTTTTCGTTCCAA+AGG | - | chr6_4:11048821-11048840 | Msa0976820:CDS | 40.0% |
| !! | TATTTCATGGCTTTGGCTTG+TGG | + | chr6_4:11049002-11049021 | None:intergenic | 40.0% |
| ! | GAGAGAGGATTTTGTGACAT+GGG | + | chr6_4:11049156-11049175 | None:intergenic | 40.0% |
| GTAATTCTGTAAAGGGAGAG+AGG | + | chr6_4:11049171-11049190 | None:intergenic | 40.0% | |
| TTTCTATTGTCACAGCCAGA+AGG | - | chr6_4:11049265-11049284 | Msa0976820:intron | 40.0% | |
| TTCTATTGTCACAGCCAGAA+GGG | - | chr6_4:11049266-11049285 | Msa0976820:intron | 40.0% | |
| GTAGTAGAAGGTGAAAATGG+AGG | - | chr6_4:11049311-11049330 | Msa0976820:intron | 40.0% | |
| CGTGTGCTTAATGTAAAACC+TGG | - | chr6_4:11049401-11049420 | Msa0976820:five_prime_UTR | 40.0% | |
| TTTCTTCCCTCCTGATAATC+TGG | - | chr6_4:11049442-11049461 | Msa0976820:five_prime_UTR | 40.0% | |
| !! | TGTTATGGTGTTGCAGTCAA+AGG | + | chr6_4:11049476-11049495 | None:intergenic | 40.0% |
| TGCTATTCACATGGGAAACT+TGG | + | chr6_4:11048339-11048358 | None:intergenic | 40.0% | |
| ! | TAAGGGGTTGCTATTCACAT+GGG | + | chr6_4:11048347-11048366 | None:intergenic | 40.0% |
| TGGAGTGTGTAGGAAAACTA+GGG | + | chr6_4:11048393-11048412 | None:intergenic | 40.0% | |
| AATATAAGGGTGGAGTGTGT+AGG | + | chr6_4:11048403-11048422 | None:intergenic | 40.0% | |
| AAGGGAAAGGAATATAAGGG+TGG | + | chr6_4:11048413-11048432 | None:intergenic | 40.0% | |
| CCGTAAGGGAAAGGAATATA+AGG | + | chr6_4:11048417-11048436 | None:intergenic | 40.0% | |
| CAACAGCTTACAACAGAAGA+GGG | - | chr6_4:11048678-11048697 | Msa0976820:CDS | 40.0% | |
| ! | GAACGTGTTTTTCGTTCCAA+AGG | - | chr6_4:11048821-11048840 | Msa0976820:CDS | 40.0% |
| !! | TATTTCATGGCTTTGGCTTG+TGG | + | chr6_4:11049002-11049021 | None:intergenic | 40.0% |
| ! | GAGAGAGGATTTTGTGACAT+GGG | + | chr6_4:11049156-11049175 | None:intergenic | 40.0% |
| GTAATTCTGTAAAGGGAGAG+AGG | + | chr6_4:11049171-11049190 | None:intergenic | 40.0% | |
| TTTCTATTGTCACAGCCAGA+AGG | - | chr6_4:11049265-11049284 | Msa0976820:intron | 40.0% | |
| TTCTATTGTCACAGCCAGAA+GGG | - | chr6_4:11049266-11049285 | Msa0976820:intron | 40.0% | |
| GTAGTAGAAGGTGAAAATGG+AGG | - | chr6_4:11049311-11049330 | Msa0976820:intron | 40.0% | |
| CGTGTGCTTAATGTAAAACC+TGG | - | chr6_4:11049401-11049420 | Msa0976820:five_prime_UTR | 40.0% | |
| TTTCTTCCCTCCTGATAATC+TGG | - | chr6_4:11049442-11049461 | Msa0976820:five_prime_UTR | 40.0% | |
| !! | TGTTATGGTGTTGCAGTCAA+AGG | + | chr6_4:11049476-11049495 | None:intergenic | 40.0% |
| ! | CTAAGGGGTTGCTATTCACA+TGG | + | chr6_4:11048348-11048367 | None:intergenic | 45.0% |
| GTGGAGTGTGTAGGAAAACT+AGG | + | chr6_4:11048394-11048413 | None:intergenic | 45.0% | |
| TTGTAGGTTCCGTAAGGGAA+AGG | + | chr6_4:11048426-11048445 | None:intergenic | 45.0% | |
| GCAACAGCTTACAACAGAAG+AGG | - | chr6_4:11048677-11048696 | Msa0976820:CDS | 45.0% | |
| !! | GGATTTTGTGACATGGGTTG+TGG | + | chr6_4:11049150-11049169 | None:intergenic | 45.0% |
| ! | GGAGAGAGGATTTTGTGACA+TGG | + | chr6_4:11049157-11049176 | None:intergenic | 45.0% |
| CTGCAAAAGGGTAAGGCATA+GGG | + | chr6_4:11049244-11049263 | None:intergenic | 45.0% | |
| ACTGCAAAAGGGTAAGGCAT+AGG | + | chr6_4:11049245-11049264 | None:intergenic | 45.0% | |
| ACAAACTGGTATCACCCTTC+TGG | + | chr6_4:11049283-11049302 | None:intergenic | 45.0% | |
| AGCTGCAGCAATTTGTCACA+TGG | - | chr6_4:11049343-11049362 | Msa0976820:CDS | 45.0% | |
| TGACATACTGGAGAGTTTCC+AGG | + | chr6_4:11049422-11049441 | None:intergenic | 45.0% | |
| GGAGGGAAGAAATGACATAC+TGG | + | chr6_4:11049434-11049453 | None:intergenic | 45.0% | |
| TCCCTCCTGATAATCTGGTT+TGG | - | chr6_4:11049447-11049466 | Msa0976820:five_prime_UTR | 45.0% | |
| CCCAAACCAGATTATCAGGA+GGG | + | chr6_4:11049451-11049470 | None:intergenic | 45.0% | |
| ! | CCCTCCTGATAATCTGGTTT+GGG | - | chr6_4:11049448-11049467 | Msa0976820:five_prime_UTR | 45.0% |
| ACCCAAACCAGATTATCAGG+AGG | + | chr6_4:11049452-11049471 | None:intergenic | 45.0% | |
| GGTACCCAAACCAGATTATC+AGG | + | chr6_4:11049455-11049474 | None:intergenic | 45.0% | |
| ! | CTAAGGGGTTGCTATTCACA+TGG | + | chr6_4:11048348-11048367 | None:intergenic | 45.0% |
| GTGGAGTGTGTAGGAAAACT+AGG | + | chr6_4:11048394-11048413 | None:intergenic | 45.0% | |
| TTGTAGGTTCCGTAAGGGAA+AGG | + | chr6_4:11048426-11048445 | None:intergenic | 45.0% | |
| GCAACAGCTTACAACAGAAG+AGG | - | chr6_4:11048677-11048696 | Msa0976820:CDS | 45.0% | |
| !! | GGATTTTGTGACATGGGTTG+TGG | + | chr6_4:11049150-11049169 | None:intergenic | 45.0% |
| ! | GGAGAGAGGATTTTGTGACA+TGG | + | chr6_4:11049157-11049176 | None:intergenic | 45.0% |
| CTGCAAAAGGGTAAGGCATA+GGG | + | chr6_4:11049244-11049263 | None:intergenic | 45.0% | |
| ACTGCAAAAGGGTAAGGCAT+AGG | + | chr6_4:11049245-11049264 | None:intergenic | 45.0% | |
| ACAAACTGGTATCACCCTTC+TGG | + | chr6_4:11049283-11049302 | None:intergenic | 45.0% | |
| AGCTGCAGCAATTTGTCACA+TGG | - | chr6_4:11049343-11049362 | Msa0976820:CDS | 45.0% | |
| TGACATACTGGAGAGTTTCC+AGG | + | chr6_4:11049422-11049441 | None:intergenic | 45.0% | |
| GGAGGGAAGAAATGACATAC+TGG | + | chr6_4:11049434-11049453 | None:intergenic | 45.0% | |
| TCCCTCCTGATAATCTGGTT+TGG | - | chr6_4:11049447-11049466 | Msa0976820:five_prime_UTR | 45.0% | |
| CCCAAACCAGATTATCAGGA+GGG | + | chr6_4:11049451-11049470 | None:intergenic | 45.0% | |
| ! | CCCTCCTGATAATCTGGTTT+GGG | - | chr6_4:11049448-11049467 | Msa0976820:five_prime_UTR | 45.0% |
| ACCCAAACCAGATTATCAGG+AGG | + | chr6_4:11049452-11049471 | None:intergenic | 45.0% | |
| GGTACCCAAACCAGATTATC+AGG | + | chr6_4:11049455-11049474 | None:intergenic | 45.0% | |
| GGGTGACACCCTATTGCATT+TGG | + | chr6_4:11049224-11049243 | None:intergenic | 50.0% | |
| GGGTGACACCCTATTGCATT+TGG | + | chr6_4:11049224-11049243 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 11048336 | 11049502 | 11048336 | ID=Msa0976820;Name=Msa0976820 |
| chr6_4 | mRNA | 11048336 | 11049502 | 11048336 | ID=Msa0976820-mRNA-1;Parent=Msa0976820;Name=Msa0976820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=124|1|1|1|0|0.5|2|9|310 |
| chr6_4 | exon | 11048336 | 11049220 | 11048336 | ID=Msa0976820-mRNA-1:exon:3994;Parent=Msa0976820-mRNA-1 |
| chr6_4 | exon | 11049322 | 11049502 | 11049322 | ID=Msa0976820-mRNA-1:exon:3993;Parent=Msa0976820-mRNA-1 |
| chr6_4 | five_prime_UTR | 11049379 | 11049502 | 11049379 | ID=Msa0976820-mRNA-1:five_prime_utr;Parent=Msa0976820-mRNA-1 |
| chr6_4 | CDS | 11049322 | 11049378 | 11049322 | ID=Msa0976820-mRNA-1:cds;Parent=Msa0976820-mRNA-1 |
| chr6_4 | CDS | 11048345 | 11049220 | 11048345 | ID=Msa0976820-mRNA-1:cds;Parent=Msa0976820-mRNA-1 |
| chr6_4 | three_prime_UTR | 11048336 | 11048344 | 11048336 | ID=Msa0976820-mRNA-1:three_prime_utr;Parent=Msa0976820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
