Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875070 | XP_003603899.1 | 97.419 | 310 | 5 | 3 | 1 | 310 | 1 | 307 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875070 | sp|D2CZZ9|BNM2C_BRANA | 41.137 | 299 | 138 | 5 | 12 | 304 | 13 | 279 | 4.91e-75 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875070 | G7J6J1 | 97.419 | 310 | 5 | 3 | 1 | 310 | 1 | 307 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025070 | Msa0875070 | -0.824739 | 6.855036e-54 | -8.615850e-47 |
| Msa0025290 | Msa0875070 | -0.822724 | 2.032614e-53 | -8.615850e-47 |
| Msa0072600 | Msa0875070 | -0.826332 | 2.874407e-54 | -8.615850e-47 |
| Msa0747230 | Msa0875070 | 0.800817 | 1.206288e-48 | -8.615850e-47 |
| Msa0471850 | Msa0875070 | 0.806874 | 6.655841e-50 | -8.615850e-47 |
| Msa0556660 | Msa0875070 | 0.801729 | 7.849098e-49 | -8.615850e-47 |
| Msa0558650 | Msa0875070 | 0.819229 | 1.295670e-52 | -8.615850e-47 |
| Msa0875070 | Msa0940130 | 0.939931 | 5.526634e-100 | -8.615850e-47 |
| Msa0875070 | Msa0940320 | 0.969376 | 4.945976e-130 | -8.615850e-47 |
| Msa0875070 | Msa0976820 | 0.829045 | 6.411160e-55 | -8.615850e-47 |
| Msa0875070 | Msa1080610 | -0.806199 | 9.239321e-50 | -8.615850e-47 |
| Msa0875070 | Msa1080680 | -0.805991 | 1.021820e-49 | -8.615850e-47 |
| Msa0875070 | Msa1131880 | 0.805175 | 1.515703e-49 | -8.615850e-47 |
| Msa0875070 | Msa1133690 | 0.803004 | 4.286638e-49 | -8.615850e-47 |
| Msa0875070 | Msa1159160 | 0.852732 | 3.806497e-61 | -8.615850e-47 |
| Msa0875070 | Msa1167150 | -0.811255 | 7.670467e-51 | -8.615850e-47 |
| Msa0875070 | Msa1303320 | 0.802692 | 4.972217e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875070 | MtrunA17_Chr3g0144421 | 97.419 | 310 | 5 | 3 | 1 | 310 | 1 | 307 | 0.0 | 615 |
| Msa0875070 | MtrunA17_Chr3g0144451 | 54.911 | 224 | 100 | 1 | 83 | 305 | 52 | 275 | 2.32e-91 | 273 |
| Msa0875070 | MtrunA17_Chr4g0034821 | 54.464 | 224 | 101 | 1 | 83 | 305 | 68 | 291 | 5.56e-90 | 270 |
| Msa0875070 | MtrunA17_Chr3g0138231 | 51.852 | 243 | 111 | 3 | 69 | 305 | 24 | 266 | 6.78e-88 | 264 |
| Msa0875070 | MtrunA17_Chr4g0034451 | 45.852 | 229 | 118 | 4 | 80 | 305 | 301 | 526 | 5.31e-66 | 216 |
| Msa0875070 | MtrunA17_Chr4g0034731 | 43.636 | 220 | 118 | 4 | 90 | 306 | 217 | 433 | 4.89e-63 | 205 |
| Msa0875070 | MtrunA17_Chr3g0144411 | 42.466 | 219 | 122 | 2 | 89 | 306 | 324 | 539 | 6.59e-63 | 207 |
| Msa0875070 | MtrunA17_Chr3g0144391 | 41.096 | 219 | 125 | 2 | 89 | 306 | 291 | 506 | 6.73e-63 | 207 |
| Msa0875070 | MtrunA17_Chr4g0034721 | 44.091 | 220 | 117 | 4 | 90 | 306 | 361 | 577 | 2.39e-58 | 196 |
| Msa0875070 | MtrunA17_Chr1g0147271 | 43.243 | 222 | 120 | 4 | 85 | 304 | 166 | 383 | 2.77e-58 | 192 |
| Msa0875070 | MtrunA17_Chr4g0034691 | 43.636 | 220 | 118 | 4 | 90 | 306 | 493 | 709 | 3.48e-57 | 196 |
| Msa0875070 | MtrunA17_Chr1g0147321 | 41.704 | 223 | 121 | 5 | 87 | 307 | 24 | 239 | 8.96e-55 | 179 |
| Msa0875070 | MtrunA17_Chr3g0139431 | 42.478 | 226 | 121 | 6 | 84 | 305 | 101 | 321 | 4.46e-54 | 179 |
| Msa0875070 | MtrunA17_Chr1g0147301 | 41.629 | 221 | 122 | 5 | 87 | 304 | 67 | 283 | 7.45e-54 | 177 |
| Msa0875070 | MtrunA17_Chr1g0147291 | 41.818 | 220 | 119 | 5 | 87 | 304 | 53 | 265 | 1.48e-53 | 176 |
| Msa0875070 | MtrunA17_Chr1g0147331 | 42.601 | 223 | 118 | 7 | 85 | 304 | 108 | 323 | 6.57e-53 | 176 |
| Msa0875070 | MtrunA17_Chr1g0147311 | 42.105 | 228 | 123 | 6 | 82 | 304 | 131 | 354 | 2.06e-52 | 176 |
| Msa0875070 | MtrunA17_Chr1g0146631 | 42.152 | 223 | 119 | 7 | 85 | 304 | 108 | 323 | 2.78e-52 | 174 |
| Msa0875070 | MtrunA17_Chr1g0147261 | 42.202 | 218 | 119 | 5 | 87 | 303 | 86 | 297 | 5.23e-52 | 173 |
| Msa0875070 | MtrunA17_Chr1g0147251 | 40.826 | 218 | 119 | 5 | 87 | 303 | 32 | 240 | 1.52e-49 | 165 |
| Msa0875070 | MtrunA17_Chr1g0147241 | 39.474 | 228 | 128 | 5 | 77 | 303 | 92 | 310 | 2.37e-49 | 166 |
| Msa0875070 | MtrunA17_Chr6g0485051 | 40.000 | 195 | 113 | 4 | 115 | 305 | 11 | 205 | 3.89e-48 | 160 |
| Msa0875070 | MtrunA17_Chr5g0413591 | 31.984 | 247 | 157 | 4 | 59 | 304 | 391 | 627 | 1.83e-30 | 120 |
| Msa0875070 | MtrunA17_Chr8g0365361 | 31.797 | 217 | 142 | 4 | 90 | 304 | 181 | 393 | 9.67e-30 | 116 |
| Msa0875070 | MtrunA17_Chr8g0365381 | 32.407 | 216 | 140 | 4 | 90 | 303 | 429 | 640 | 9.93e-29 | 115 |
| Msa0875070 | MtrunA17_Chr8g0365401 | 33.641 | 217 | 138 | 5 | 90 | 304 | 412 | 624 | 7.98e-28 | 113 |
| Msa0875070 | MtrunA17_Chr3g0117791 | 32.258 | 217 | 141 | 4 | 90 | 304 | 413 | 625 | 6.64e-27 | 110 |
| Msa0875070 | MtrunA17_Chr5g0412991 | 31.193 | 218 | 144 | 5 | 88 | 303 | 195 | 408 | 3.24e-26 | 107 |
| Msa0875070 | MtrunA17_Chr5g0412991 | 30.939 | 181 | 120 | 4 | 109 | 287 | 7 | 184 | 8.80e-20 | 89.0 |
| Msa0875070 | MtrunA17_Chr5g0412981 | 31.193 | 218 | 144 | 5 | 88 | 303 | 195 | 408 | 3.24e-26 | 107 |
| Msa0875070 | MtrunA17_Chr5g0412981 | 30.939 | 181 | 120 | 4 | 109 | 287 | 7 | 184 | 1.23e-19 | 88.6 |
| Msa0875070 | MtrunA17_Chr5g0412951 | 30.457 | 197 | 132 | 4 | 109 | 303 | 14 | 207 | 4.34e-24 | 97.4 |
| Msa0875070 | MtrunA17_Chr4g0034051 | 47.500 | 80 | 40 | 2 | 229 | 306 | 1 | 80 | 7.57e-22 | 87.8 |
| Msa0875070 | MtrunA17_Chr4g0076231 | 33.333 | 156 | 100 | 3 | 150 | 303 | 3 | 156 | 3.26e-21 | 88.2 |
| Msa0875070 | MtrunA17_Chr8g0355861 | 37.143 | 140 | 79 | 5 | 166 | 305 | 130 | 260 | 4.70e-21 | 90.9 |
| Msa0875070 | MtrunA17_Chr8g0355331 | 32.948 | 173 | 100 | 6 | 133 | 305 | 265 | 421 | 7.65e-21 | 92.4 |
| Msa0875070 | MtrunA17_Chr8g0355311 | 35.714 | 140 | 81 | 5 | 166 | 305 | 60 | 190 | 2.39e-20 | 87.0 |
| Msa0875070 | MtrunA17_Chr8g0355841 | 39.286 | 140 | 76 | 5 | 166 | 305 | 379 | 509 | 1.52e-19 | 89.0 |
| Msa0875070 | MtrunA17_Chr8g0355321 | 35.000 | 140 | 82 | 5 | 166 | 305 | 172 | 302 | 4.84e-19 | 85.5 |
| Msa0875070 | MtrunA17_Chr2g0318901 | 33.333 | 141 | 85 | 5 | 165 | 305 | 128 | 259 | 1.68e-18 | 83.6 |
| Msa0875070 | MtrunA17_Chr8g0355871 | 34.416 | 154 | 91 | 6 | 154 | 306 | 79 | 223 | 3.49e-18 | 82.0 |
| Msa0875070 | MtrunA17_Chr8g0355831 | 38.571 | 140 | 77 | 5 | 166 | 305 | 221 | 351 | 3.57e-18 | 84.0 |
| Msa0875070 | MtrunA17_Chr1g0168781 | 32.653 | 147 | 91 | 5 | 159 | 305 | 121 | 259 | 4.86e-18 | 82.4 |
| Msa0875070 | MtrunA17_Chr2g0318871 | 28.440 | 218 | 123 | 9 | 90 | 305 | 73 | 259 | 3.67e-16 | 77.0 |
| Msa0875070 | MtrunA17_Chr8g0371951 | 38.824 | 85 | 49 | 2 | 212 | 294 | 4 | 87 | 2.64e-14 | 67.4 |
| Msa0875070 | MtrunA17_Chr5g0413021 | 29.032 | 124 | 84 | 3 | 181 | 303 | 7 | 127 | 5.21e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875070 | AT1G49320.1 | 48.899 | 227 | 110 | 3 | 84 | 304 | 52 | 278 | 8.41e-73 | 226 |
| Msa0875070 | AT5G25610.1 | 42.857 | 224 | 120 | 5 | 84 | 303 | 170 | 389 | 8.18e-56 | 186 |
| Msa0875070 | AT1G70370.2 | 33.333 | 222 | 132 | 6 | 90 | 304 | 411 | 623 | 3.92e-26 | 108 |
| Msa0875070 | AT1G70370.1 | 33.333 | 222 | 132 | 6 | 90 | 304 | 411 | 623 | 3.92e-26 | 108 |
| Msa0875070 | AT1G23760.1 | 32.883 | 222 | 133 | 7 | 90 | 304 | 407 | 619 | 9.00e-25 | 104 |
| Msa0875070 | AT1G60390.1 | 30.804 | 224 | 141 | 5 | 86 | 303 | 405 | 620 | 8.09e-24 | 102 |
Find 73 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTATTATATATATATT+TGG | 0.200137 | 6_1:-11105496 | Msa0875070:three_prime_UTR |
| GTCACATGGATACTTCTAAA+TGG | 0.212561 | 6_1:-11105664 | Msa0875070:CDS |
| TTTCTTCCCTCCTGATAATC+TGG | 0.262557 | 6_1:-11105579 | Msa0875070:CDS |
| AAACTAGGGAGTTGATTAAT+TGG | 0.264198 | 6_1:+11106682 | None:intergenic |
| CCCTCCTGATAATCTGGTTT+GGG | 0.285119 | 6_1:-11105573 | Msa0875070:CDS |
| AAATTCCACACATTGTTATC+TGG | 0.293790 | 6_1:-11106792 | Msa0875070:five_prime_UTR |
| GACTTTGCAAATTACATGTT+TGG | 0.295983 | 6_1:-11105923 | Msa0875070:CDS |
| TCCCTCCTGATAATCTGGTT+TGG | 0.305714 | 6_1:-11105574 | Msa0875070:CDS |
| CCGTAAGGGAAAGGAATATA+AGG | 0.308964 | 6_1:+11106639 | None:intergenic |
| ATTAATTGGATGTAGGTCTA+AGG | 0.311404 | 6_1:+11106696 | None:intergenic |
| ATTTCAGTTCCAAATGCAAT+AGG | 0.315492 | 6_1:-11105809 | Msa0875070:CDS |
| TAGAAAGATAACTATAATTA+AGG | 0.316435 | 6_1:-11106383 | Msa0875070:CDS |
| AGCAGTTGATGAATCTTTCT+TGG | 0.317340 | 6_1:+11106141 | None:intergenic |
| GTTCCAAAGGATTTAAAAGT+TGG | 0.342461 | 6_1:-11106187 | Msa0875070:CDS |
| GGCACCCAAACCAGATTATC+AGG | 0.351108 | 6_1:+11105569 | None:intergenic |
| AAATTGTGTAATTCTGTAAA+GGG | 0.354659 | 6_1:+11105846 | None:intergenic |
| AAGTGTGTATTTCATGGCTT+TGG | 0.373004 | 6_1:+11106015 | None:intergenic |
| TTGTTCAAGTGTGTATTTCA+TGG | 0.375445 | 6_1:+11106009 | None:intergenic |
| TACTACAATTTCATACAAAC+TGG | 0.390862 | 6_1:+11105727 | None:intergenic |
| TTGTATGAAATTGTAGTAGA+AGG | 0.391678 | 6_1:-11105722 | Msa0875070:CDS |
| ATTGTAGTAGAAGGTGAAAA+TGG | 0.391681 | 6_1:-11105713 | Msa0875070:CDS |
| CCTTATATTCCTTTCCCTTA+CGG | 0.393008 | 6_1:-11106639 | Msa0875070:five_prime_UTR |
| TGCTATTCACATGGGAAACT+TGG | 0.395953 | 6_1:+11106722 | None:intergenic |
| TGACATACTGGAGAGTTTCC+AGG | 0.407905 | 6_1:+11105602 | None:intergenic |
| AAAAGACTAGTAGGGTATAT+AGG | 0.408467 | 6_1:+11106529 | None:intergenic |
| GAAATTGTGTAATTCTGTAA+AGG | 0.412679 | 6_1:+11105845 | None:intergenic |
| AAAGTCAAACAAAGACTCTA+AGG | 0.413155 | 6_1:+11105940 | None:intergenic |
| TGACAATAGAAAACTGCAAA+AGG | 0.418592 | 6_1:+11105767 | None:intergenic |
| ACAAACTGGTATCACCCTTC+TGG | 0.421146 | 6_1:+11105741 | None:intergenic |
| GGGTGACACCCTATTGCATT+TGG | 0.430364 | 6_1:+11105800 | None:intergenic |
| AGTTGGTGTATTTGATTTGA+AGG | 0.431479 | 6_1:+11106828 | None:intergenic |
| AGATGGAGAAGAAATCTAGA+AGG | 0.448342 | 6_1:+11106056 | None:intergenic |
| TCACATGGATACTTCTAAAT+GGG | 0.449148 | 6_1:-11105663 | Msa0875070:CDS |
| TTTCAGTTCCAAATGCAATA+GGG | 0.450082 | 6_1:-11105808 | Msa0875070:CDS |
| TATTTCATGGCTTTGGCTTG+TGG | 0.464005 | 6_1:+11106022 | None:intergenic |
| GTAATTCTGTAAAGGGATAG+AGG | 0.467198 | 6_1:+11105853 | None:intergenic |
| CGTTTAATACTTTAGTCCCA+TGG | 0.484923 | 6_1:-11106898 | None:intergenic |
| GAGAAGAAATCTAGAAGGAA+AGG | 0.485932 | 6_1:+11106061 | None:intergenic |
| GGAGTTGATTAATTGGATGT+AGG | 0.488259 | 6_1:+11106689 | None:intergenic |
| CGTGTGCTTAATGTAAAACC+TGG | 0.488283 | 6_1:-11105620 | Msa0875070:CDS |
| GGAGGGAAGAAATGACATAC+TGG | 0.503691 | 6_1:+11105590 | None:intergenic |
| TTAATTGGATGTAGGTCTAA+GGG | 0.509791 | 6_1:+11106697 | None:intergenic |
| CTGCAAAAGGGTAAGGCATA+GGG | 0.513892 | 6_1:+11105780 | None:intergenic |
| GACGAGTGTGTAGGAAAACT+AGG | 0.515837 | 6_1:+11106667 | None:intergenic |
| TGTAAGCTGTTGCAAATCAT+AGG | 0.524928 | 6_1:+11106354 | None:intergenic |
| TCTAGTAAATAATAGTATCA+TGG | 0.525126 | 6_1:-11106320 | Msa0875070:CDS |
| TGTTATGGTGTTGCAGTCAA+AGG | 0.525931 | 6_1:+11105548 | None:intergenic |
| TAGAAAACTGCAAAAGGGTA+AGG | 0.531191 | 6_1:+11105773 | None:intergenic |
| TTGTAGGTTCCGTAAGGGAA+AGG | 0.532944 | 6_1:+11106630 | None:intergenic |
| GACAATAGAAAACTGCAAAA+GGG | 0.537400 | 6_1:+11105768 | None:intergenic |
| TTCCACACATTGTTATCTGG+TGG | 0.547073 | 6_1:-11106789 | Msa0875070:five_prime_UTR |
| CTAAGGGGTTGCTATTCACA+TGG | 0.558604 | 6_1:+11106713 | None:intergenic |
| GTAGTAGTAGTAGTGCAGTC+AGG | 0.560516 | 6_1:+11106765 | None:intergenic |
| ACTGCAAAAGGGTAAGGCAT+AGG | 0.564319 | 6_1:+11105779 | None:intergenic |
| AGCTGCAGCAATTTGTCACA+TGG | 0.567177 | 6_1:-11105678 | Msa0875070:CDS |
| TTTCTATTGTCACAGCCAGA+AGG | 0.572783 | 6_1:-11105756 | Msa0875070:CDS |
| CGTAAGGGAAAGGAATATAA+GGG | 0.583432 | 6_1:+11106640 | None:intergenic |
| CAACAGCTTACAACAGAAGA+GGG | 0.584548 | 6_1:-11106343 | Msa0875070:CDS |
| GCAACAGCTTACAACAGAAG+AGG | 0.592350 | 6_1:-11106344 | Msa0875070:CDS |
| TTCTATTGTCACAGCCAGAA+GGG | 0.596892 | 6_1:-11105755 | Msa0875070:CDS |
| AAGGGTGGAGACGAGTGTGT+AGG | 0.599436 | 6_1:+11106658 | None:intergenic |
| TGCAACACCATAACAAGTTG+TGG | 0.599848 | 6_1:-11105540 | Msa0875070:exon |
| TTTGTTTGTAGGTTCCGTAA+GGG | 0.602691 | 6_1:+11106625 | None:intergenic |
| CTACTACTACTAATATAATG+AGG | 0.603146 | 6_1:-11106752 | Msa0875070:five_prime_UTR |
| TTTATAATATGGGAGGAGGG+AGG | 0.603327 | 6_1:+11105449 | None:intergenic |
| TAATTGGATGTAGGTCTAAG+GGG | 0.616446 | 6_1:+11106698 | None:intergenic |
| GTAGTAGAAGGTGAAAATGG+AGG | 0.623165 | 6_1:-11105710 | Msa0875070:CDS |
| ACGAGTGTGTAGGAAAACTA+GGG | 0.632044 | 6_1:+11106668 | None:intergenic |
| CCCAAACCAGATTATCAGGA+GGG | 0.634612 | 6_1:+11105573 | None:intergenic |
| GTCCACCAGATAACAATGTG+TGG | 0.657661 | 6_1:+11106787 | None:intergenic |
| ACCCAAACCAGATTATCAGG+AGG | 0.664591 | 6_1:+11105572 | None:intergenic |
| TAAGGGGTTGCTATTCACAT+GGG | 0.675323 | 6_1:+11106714 | None:intergenic |
| AAGGGAAAGGAATATAAGGG+TGG | 0.701614 | 6_1:+11106643 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATATAAACATTAGT+TGG | + | chr6_1:11105506-11105525 | None:intergenic | 10.0% |
| !!! | TAATTTTTCTCTTTTATGAT+TGG | - | chr6_1:11105880-11105899 | Msa0875070:CDS | 15.0% |
| !! | TAGAAAGATAACTATAATTA+AGG | - | chr6_1:11105931-11105950 | Msa0875070:CDS | 15.0% |
| !! | TCTAGTAAATAATAGTATCA+TGG | - | chr6_1:11105994-11106013 | Msa0875070:CDS | 20.0% |
| !! | TCTTTCTTGGAAAAATAAAT+TGG | + | chr6_1:11106163-11106182 | None:intergenic | 20.0% |
| !!! | AAAACTTTGAATTTTGAGTT+GGG | + | chr6_1:11106418-11106437 | None:intergenic | 20.0% |
| !! | AAATTGTGTAATTCTGTAAA+GGG | + | chr6_1:11106471-11106490 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTTATAATATGGG+AGG | + | chr6_1:11106875-11106894 | None:intergenic | 20.0% |
| ! | CTACTACTACTAATATAATG+AGG | - | chr6_1:11105562-11105581 | Msa0875070:CDS | 25.0% |
| !!! | ATTTTTGGTGTTTTGTTTGT+AGG | + | chr6_1:11105703-11105722 | None:intergenic | 25.0% |
| ! | CAAACAAAACACCAAAAATA+AGG | - | chr6_1:11105704-11105723 | Msa0875070:CDS | 25.0% |
| ! | ACAGAAAAAGATGATTTCAA+AGG | - | chr6_1:11106060-11106079 | Msa0875070:CDS | 25.0% |
| !! | TTTCCAACTTTTAAATCCTT+TGG | + | chr6_1:11106133-11106152 | None:intergenic | 25.0% |
| !!! | ATTTTGTTAGCTTCTTCTTT+TGG | + | chr6_1:11106211-11106230 | None:intergenic | 25.0% |
| !!! | CAAAACTTTGAATTTTGAGT+TGG | + | chr6_1:11106419-11106438 | None:intergenic | 25.0% |
| ! | GAAATTGTGTAATTCTGTAA+AGG | + | chr6_1:11106472-11106491 | None:intergenic | 25.0% |
| ! | TACTACAATTTCATACAAAC+TGG | + | chr6_1:11106590-11106609 | None:intergenic | 25.0% |
| ! | TTGTATGAAATTGTAGTAGA+AGG | - | chr6_1:11106592-11106611 | Msa0875070:five_prime_UTR | 25.0% |
| !!! | TTTTTTATAATATGGGAGGA+GGG | + | chr6_1:11106871-11106890 | None:intergenic | 25.0% |
| !!! | TTTTTTTATAATATGGGAGG+AGG | + | chr6_1:11106872-11106891 | None:intergenic | 25.0% |
| !! | AGTTGGTGTATTTGATTTGA+AGG | + | chr6_1:11105489-11105508 | None:intergenic | 30.0% |
| AAATTCCACACATTGTTATC+TGG | - | chr6_1:11105522-11105541 | Msa0875070:three_prime_UTR | 30.0% | |
| TTAATTGGATGTAGGTCTAA+GGG | + | chr6_1:11105620-11105639 | None:intergenic | 30.0% | |
| ATTAATTGGATGTAGGTCTA+AGG | + | chr6_1:11105621-11105640 | None:intergenic | 30.0% | |
| ! | AAACTAGGGAGTTGATTAAT+TGG | + | chr6_1:11105635-11105654 | None:intergenic | 30.0% |
| !!! | GAAACTTAGGACCTTATTTT+TGG | + | chr6_1:11105718-11105737 | None:intergenic | 30.0% |
| !!! | CTCTGTTTCTTTTGAAACTT+AGG | + | chr6_1:11105731-11105750 | None:intergenic | 30.0% |
| ! | TGAGACTTTTAATCTCTTCT+TGG | - | chr6_1:11105754-11105773 | Msa0875070:CDS | 30.0% |
| AAAAGACTAGTAGGGTATAT+AGG | + | chr6_1:11105788-11105807 | None:intergenic | 30.0% | |
| !!! | ATATACCCTACTAGTCTTTT+TGG | - | chr6_1:11105788-11105807 | Msa0875070:CDS | 30.0% |
| TCTTACCAAAAAGACTAGTA+GGG | + | chr6_1:11105796-11105815 | None:intergenic | 30.0% | |
| ATCTTACCAAAAAGACTAGT+AGG | + | chr6_1:11105797-11105816 | None:intergenic | 30.0% | |
| GTTCCAAAGGATTTAAAAGT+TGG | - | chr6_1:11106127-11106146 | Msa0875070:CDS | 30.0% | |
| ! | TCTTCTTTTGGTAGGAATTT+TGG | + | chr6_1:11106199-11106218 | None:intergenic | 30.0% |
| !!! | AGAAGGAAAGGTAGTTTTTT+TGG | + | chr6_1:11106244-11106263 | None:intergenic | 30.0% |
| TTGTTCAAGTGTGTATTTCA+TGG | + | chr6_1:11106308-11106327 | None:intergenic | 30.0% | |
| ! | ACAATGCAATTTTGAACCTA+TGG | - | chr6_1:11106324-11106343 | Msa0875070:CDS | 30.0% |
| AAAGTCAAACAAAGACTCTA+AGG | + | chr6_1:11106377-11106396 | None:intergenic | 30.0% | |
| GACTTTGCAAATTACATGTT+TGG | - | chr6_1:11106391-11106410 | Msa0875070:CDS | 30.0% | |
| ATTTCAGTTCCAAATGCAAT+AGG | - | chr6_1:11106505-11106524 | Msa0875070:intron | 30.0% | |
| TTTCAGTTCCAAATGCAATA+GGG | - | chr6_1:11106506-11106525 | Msa0875070:intron | 30.0% | |
| GACAATAGAAAACTGCAAAA+GGG | + | chr6_1:11106549-11106568 | None:intergenic | 30.0% | |
| TGACAATAGAAAACTGCAAA+AGG | + | chr6_1:11106550-11106569 | None:intergenic | 30.0% | |
| ATTGTAGTAGAAGGTGAAAA+TGG | - | chr6_1:11106601-11106620 | Msa0875070:five_prime_UTR | 30.0% | |
| TCACATGGATACTTCTAAAT+GGG | - | chr6_1:11106651-11106670 | Msa0875070:five_prime_UTR | 30.0% | |
| ! | TTTTACATTAAGCACACGAA+AGG | + | chr6_1:11106692-11106711 | None:intergenic | 30.0% |
| !! | AAAAAGACCACAACTTGTTA+TGG | + | chr6_1:11106784-11106803 | None:intergenic | 30.0% |
| !! | TTTTCGTTTTTGCTCACCAT+GGG | + | chr6_1:11105435-11105454 | None:intergenic | 35.0% |
| GCAAAAACGAAAACAGAGAA+TGG | - | chr6_1:11105442-11105461 | Msa0875070:three_prime_UTR | 35.0% | |
| TAATTGGATGTAGGTCTAAG+GGG | + | chr6_1:11105619-11105638 | None:intergenic | 35.0% | |
| ! | GGAGTTGATTAATTGGATGT+AGG | + | chr6_1:11105628-11105647 | None:intergenic | 35.0% |
| CGTAAGGGAAAGGAATATAA+GGG | + | chr6_1:11105677-11105696 | None:intergenic | 35.0% | |
| CCTTATATTCCTTTCCCTTA+CGG | - | chr6_1:11105675-11105694 | Msa0875070:CDS | 35.0% | |
| TTTGTTTGTAGGTTCCGTAA+GGG | + | chr6_1:11105692-11105711 | None:intergenic | 35.0% | |
| !! | TTTTGTTTGTAGGTTCCGTA+AGG | + | chr6_1:11105693-11105712 | None:intergenic | 35.0% |
| TGTAAGCTGTTGCAAATCAT+AGG | + | chr6_1:11105963-11105982 | None:intergenic | 35.0% | |
| CGAAAAACACGTTCAATTCA+GGG | + | chr6_1:11106108-11106127 | None:intergenic | 35.0% | |
| ACGAAAAACACGTTCAATTC+AGG | + | chr6_1:11106109-11106128 | None:intergenic | 35.0% | |
| !! | AGCAGTTGATGAATCTTTCT+TGG | + | chr6_1:11106176-11106195 | None:intergenic | 35.0% |
| !! | TGTTAGCTTCTTCTTTTGGT+AGG | + | chr6_1:11106207-11106226 | None:intergenic | 35.0% |
| !!! | GGTAGTTTTTTTGGTGTGAA+AGG | + | chr6_1:11106235-11106254 | None:intergenic | 35.0% |
| GAGAAGAAATCTAGAAGGAA+AGG | + | chr6_1:11106256-11106275 | None:intergenic | 35.0% | |
| AGATGGAGAAGAAATCTAGA+AGG | + | chr6_1:11106261-11106280 | None:intergenic | 35.0% | |
| !!! | TTGTGGAGAGTTTTTTGAGA+TGG | + | chr6_1:11106278-11106297 | None:intergenic | 35.0% |
| AAGTGTGTATTTCATGGCTT+TGG | + | chr6_1:11106302-11106321 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGAACCTATGGA+AGG | - | chr6_1:11106328-11106347 | Msa0875070:CDS | 35.0% |
| ! | AATTTTGTCTCTCCTTCCAT+AGG | + | chr6_1:11106343-11106362 | None:intergenic | 35.0% |
| ! | GATAGAGGATTTTGTGACAT+GGG | + | chr6_1:11106449-11106468 | None:intergenic | 35.0% |
| GTAATTCTGTAAAGGGATAG+AGG | + | chr6_1:11106464-11106483 | None:intergenic | 35.0% | |
| TAGAAAACTGCAAAAGGGTA+AGG | + | chr6_1:11106544-11106563 | None:intergenic | 35.0% | |
| GTCACATGGATACTTCTAAA+TGG | - | chr6_1:11106650-11106669 | Msa0875070:five_prime_UTR | 35.0% | |
| !! | GTTTTCGTTTTTGCTCACCA+TGG | + | chr6_1:11105436-11105455 | None:intergenic | 40.0% |
| TTCCACACATTGTTATCTGG+TGG | - | chr6_1:11105525-11105544 | Msa0875070:three_prime_UTR | 40.0% | |
| TGCTATTCACATGGGAAACT+TGG | + | chr6_1:11105595-11105614 | None:intergenic | 40.0% | |
| ! | TAAGGGGTTGCTATTCACAT+GGG | + | chr6_1:11105603-11105622 | None:intergenic | 40.0% |
| ACGAGTGTGTAGGAAAACTA+GGG | + | chr6_1:11105649-11105668 | None:intergenic | 40.0% | |
| AAGGGAAAGGAATATAAGGG+TGG | + | chr6_1:11105674-11105693 | None:intergenic | 40.0% | |
| CCGTAAGGGAAAGGAATATA+AGG | + | chr6_1:11105678-11105697 | None:intergenic | 40.0% | |
| CAACAGCTTACAACAGAAGA+GGG | - | chr6_1:11105971-11105990 | Msa0875070:CDS | 40.0% | |
| ! | GAACGTGTTTTTCGTTCCAA+AGG | - | chr6_1:11106114-11106133 | Msa0875070:CDS | 40.0% |
| !! | TATTTCATGGCTTTGGCTTG+TGG | + | chr6_1:11106295-11106314 | None:intergenic | 40.0% |
| ! | GGATAGAGGATTTTGTGACA+TGG | + | chr6_1:11106450-11106469 | None:intergenic | 40.0% |
| TTTCTATTGTCACAGCCAGA+AGG | - | chr6_1:11106558-11106577 | Msa0875070:CDS | 40.0% | |
| TTCTATTGTCACAGCCAGAA+GGG | - | chr6_1:11106559-11106578 | Msa0875070:CDS | 40.0% | |
| GTAGTAGAAGGTGAAAATGG+AGG | - | chr6_1:11106604-11106623 | Msa0875070:five_prime_UTR | 40.0% | |
| CGTGTGCTTAATGTAAAACC+TGG | - | chr6_1:11106694-11106713 | Msa0875070:five_prime_UTR | 40.0% | |
| TTTCTTCCCTCCTGATAATC+TGG | - | chr6_1:11106735-11106754 | Msa0875070:five_prime_UTR | 40.0% | |
| !! | TGTTATGGTGTTGCAGTCAA+AGG | + | chr6_1:11106769-11106788 | None:intergenic | 40.0% |
| TGCAACACCATAACAAGTTG+TGG | - | chr6_1:11106774-11106793 | Msa0875070:five_prime_UTR | 40.0% | |
| TTTATAATATGGGAGGAGGG+AGG | + | chr6_1:11106868-11106887 | None:intergenic | 40.0% | |
| GTCCACCAGATAACAATGTG+TGG | + | chr6_1:11105530-11105549 | None:intergenic | 45.0% | |
| GTAGTAGTAGTAGTGCAGTC+AGG | + | chr6_1:11105552-11105571 | None:intergenic | 45.0% | |
| ! | CTAAGGGGTTGCTATTCACA+TGG | + | chr6_1:11105604-11105623 | None:intergenic | 45.0% |
| GACGAGTGTGTAGGAAAACT+AGG | + | chr6_1:11105650-11105669 | None:intergenic | 45.0% | |
| TTGTAGGTTCCGTAAGGGAA+AGG | + | chr6_1:11105687-11105706 | None:intergenic | 45.0% | |
| GCAACAGCTTACAACAGAAG+AGG | - | chr6_1:11105970-11105989 | Msa0875070:CDS | 45.0% | |
| !! | GGATTTTGTGACATGGGTTG+TGG | + | chr6_1:11106443-11106462 | None:intergenic | 45.0% |
| CTGCAAAAGGGTAAGGCATA+GGG | + | chr6_1:11106537-11106556 | None:intergenic | 45.0% | |
| ACTGCAAAAGGGTAAGGCAT+AGG | + | chr6_1:11106538-11106557 | None:intergenic | 45.0% | |
| ACAAACTGGTATCACCCTTC+TGG | + | chr6_1:11106576-11106595 | None:intergenic | 45.0% | |
| AGCTGCAGCAATTTGTCACA+TGG | - | chr6_1:11106636-11106655 | Msa0875070:five_prime_UTR | 45.0% | |
| TGACATACTGGAGAGTTTCC+AGG | + | chr6_1:11106715-11106734 | None:intergenic | 45.0% | |
| GGAGGGAAGAAATGACATAC+TGG | + | chr6_1:11106727-11106746 | None:intergenic | 45.0% | |
| TCCCTCCTGATAATCTGGTT+TGG | - | chr6_1:11106740-11106759 | Msa0875070:five_prime_UTR | 45.0% | |
| CCCAAACCAGATTATCAGGA+GGG | + | chr6_1:11106744-11106763 | None:intergenic | 45.0% | |
| ! | CCCTCCTGATAATCTGGTTT+GGG | - | chr6_1:11106741-11106760 | Msa0875070:five_prime_UTR | 45.0% |
| ACCCAAACCAGATTATCAGG+AGG | + | chr6_1:11106745-11106764 | None:intergenic | 45.0% | |
| !! | TTATGTATTATATATATATT+TGG | - | chr6_1:11106818-11106837 | Msa0875070:five_prime_UTR | 5.0% |
| !!! | TTATAGTTTTTTTATAATAT+GGG | + | chr6_1:11106878-11106897 | None:intergenic | 5.0% |
| !!! | TTTATAGTTTTTTTATAATA+TGG | + | chr6_1:11106879-11106898 | None:intergenic | 5.0% |
| GGGTGACACCCTATTGCATT+TGG | + | chr6_1:11106517-11106536 | None:intergenic | 50.0% | |
| GGCACCCAAACCAGATTATC+AGG | + | chr6_1:11106748-11106767 | None:intergenic | 50.0% | |
| AAGGGTGGAGACGAGTGTGT+AGG | + | chr6_1:11105659-11105678 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 11105425 | 11106911 | 11105425 | ID=Msa0875070;Name=Msa0875070 |
| chr6_1 | mRNA | 11105425 | 11106911 | 11105425 | ID=Msa0875070-mRNA-1;Parent=Msa0875070;Name=Msa0875070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=328|1|1|1|0|0.5|2|125|310 |
| chr6_1 | exon | 11105425 | 11106425 | 11105425 | ID=Msa0875070-mRNA-1:exon:3459;Parent=Msa0875070-mRNA-1 |
| chr6_1 | exon | 11106527 | 11106911 | 11106527 | ID=Msa0875070-mRNA-1:exon:3458;Parent=Msa0875070-mRNA-1 |
| chr6_1 | five_prime_UTR | 11106584 | 11106911 | 11106584 | ID=Msa0875070-mRNA-1:five_prime_utr;Parent=Msa0875070-mRNA-1 |
| chr6_1 | CDS | 11106527 | 11106583 | 11106527 | ID=Msa0875070-mRNA-1:cds;Parent=Msa0875070-mRNA-1 |
| chr6_1 | CDS | 11105550 | 11106425 | 11105550 | ID=Msa0875070-mRNA-1:cds;Parent=Msa0875070-mRNA-1 |
| chr6_1 | three_prime_UTR | 11105425 | 11105549 | 11105425 | ID=Msa0875070-mRNA-1:three_prime_utr;Parent=Msa0875070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
