AlfalfaGEDB | Msa0842660

M. sativa cultivar zhongmu-4 / Msa0842660

KEGG: K03183
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663
PFAM: PF01209.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842660	XP_003613181.2	93.902	246	4	1	1	235	17	262	3.28e-167	471

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842660	sp\|Q3ED65\|MENG_ARATH	67.089	237	65	2	10	233	23	259	1.00e-111	324

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842660	G7K058	93.902	246	4	1	1	235	17	262	1.57e-167	471

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0842660	0.817193	3.744581e-52	-8.615850e-47
Msa0001420	Msa0842660	0.828281	9.808794e-55	-8.615850e-47
Msa0001510	Msa0842660	0.826076	3.308546e-54	-8.615850e-47
Msa0001540	Msa0842660	0.870830	1.084837e-66	-8.615850e-47
Msa0002060	Msa0842660	0.858573	7.506272e-63	-8.615850e-47
Msa0002690	Msa0842660	0.820824	5.591531e-53	-8.615850e-47
Msa0002700	Msa0842660	0.813768	2.165510e-51	-8.615850e-47
Msa0004180	Msa0842660	0.829616	4.659690e-55	-8.615850e-47
Msa0009210	Msa0842660	0.864434	1.219764e-64	-8.615850e-47
Msa0012460	Msa0842660	0.835643	1.488908e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842660	MtrunA17_Chr5g0413181	90.541	148	3	1	99	235	1	148	3.44e-93	270
Msa0842660	MtrunA17_Chr5g0413191	98.851	87	1	0	1	87	25	111	6.08e-60	186
Msa0842660	MtrunA17_Chr4g0003041	30.769	234	132	6	25	228	49	282	7.68e-23	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842660	AT1G23360.1	67.089	237	65	2	10	233	23	259	1.02e-112	324
Msa0842660	AT1G23360.2	61.392	158	48	2	89	233	1	158	2.71e-63	195
Msa0842660	AT1G23360.3	61.392	158	48	2	89	233	1	158	2.71e-63	195
Msa0842660	AT5G57300.3	27.083	240	136	4	25	230	48	282	4.86e-22	92.4
Msa0842660	AT5G57300.1	27.083	240	136	4	25	230	48	282	4.86e-22	92.4
Msa0842660	AT5G57300.4	27.083	240	136	4	25	230	48	282	4.86e-22	92.4
Msa0842660	AT5G57300.2	27.083	240	136	4	25	230	48	282	4.86e-22	92.4

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Find 106 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGATGCTCTTCATTCT+TGG	0.256604	5_4:-19801168	Msa0842660:three_prime_UTR
AACTAATGGTCGCCTCATCA+CGG	0.620553	5_4:-19802842	Msa0842660:CDS
AACTTTGTTAGACAAGAGAA+AGG	0.551476	5_4:+19803566	None:intergenic
AAGCCAATTTACTTGTGGCA+CGG	0.596158	5_4:-19801368	Msa0842660:three_prime_UTR
AAGGATAAGGAGCAACCGCC+GGG	0.515863	5_4:+19803947	None:intergenic
AAGGGTATACCATAAAGTCA+AGG	0.655157	5_4:+19802330	None:intergenic
AAGTCATACGAAAACATGAC+TGG	0.557528	5_4:+19801603	None:intergenic
AATTCCTACCTCCCCTGTTC+AGG	0.389107	5_4:-19801739	Msa0842660:three_prime_UTR
ACAAGTAAATTGGCTTGGCT+CGG	0.503158	5_4:+19801375	None:intergenic
ACAGCCTGAACAGGGGAGGT+AGG	0.595555	5_4:+19801735	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGAGAAAGAAAGAAGAA+GGG	+	chr5_4:19801075-19801094	Msa0842650:CDS	30.0%
AGAAAGAGAAAGAAAGAAGA+AGG	+	chr5_4:19801076-19801095	Msa0842650:CDS	30.0%
AACTTTGTTAGACAAGAGAA+AGG	+	chr5_4:19801351-19801370	None:intergenic	30.0%
TGGAATAAAATCGGGTTTAT+TGG	-	chr5_4:19801529-19801548	Msa0842660:three_prime_UTR	30.0%
AACCAACCCAAATTCTTTAT+CGG	-	chr5_4:19801752-19801771	Msa0842660:three_prime_UTR	30.0%
ACAAGACAACAAATCCTTTA+TGG	-	chr5_4:19801948-19801967	Msa0842660:intron	30.0%
TGCAAACAAAATGTCCATAA+AGG	+	chr5_4:19801965-19801984	None:intergenic	30.0%
ATCCCAAAAGATTCACAAAA+CGG	+	chr5_4:19802020-19802039	None:intergenic	30.0%
TCAATAATATTGAGTGAGCA+TGG	-	chr5_4:19802114-19802133	Msa0842660:CDS	30.0%
CAATAATATTGAGTGAGCAT+GGG	-	chr5_4:19802115-19802134	Msa0842660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	19800897	19804039	19800897	ID=Msa0842660;Name=Msa0842660
chr5_4	mRNA	19800897	19804039	19800897	ID=Msa0842660-mRNA-1;Parent=Msa0842660;Name=Msa0842660-mRNA-1;_AED=0.11;_eAED=0.11;_QI=65\|1\|1\|1\|1\|1\|8\|898\|235
chr5_4	exon	19800897	19801895	19800897	ID=Msa0842660-mRNA-1:exon:8262;Parent=Msa0842660-mRNA-1
chr5_4	exon	19802073	19802172	19802073	ID=Msa0842660-mRNA-1:exon:8261;Parent=Msa0842660-mRNA-1
chr5_4	exon	19802340	19802368	19802340	ID=Msa0842660-mRNA-1:exon:8260;Parent=Msa0842660-mRNA-1
chr5_4	exon	19802449	19802582	19802449	ID=Msa0842660-mRNA-1:exon:8259;Parent=Msa0842660-mRNA-1
chr5_4	exon	19802810	19802892	19802810	ID=Msa0842660-mRNA-1:exon:8258;Parent=Msa0842660-mRNA-1
chr5_4	exon	19803551	19803641	19803551	ID=Msa0842660-mRNA-1:exon:8257;Parent=Msa0842660-mRNA-1
chr5_4	exon	19803729	19803793	19803729	ID=Msa0842660-mRNA-1:exon:8256;Parent=Msa0842660-mRNA-1
chr5_4	exon	19803870	19804039	19803870	ID=Msa0842660-mRNA-1:exon:8255;Parent=Msa0842660-mRNA-1
chr5_4	five_prime_UTR	19803975	19804039	19803975	ID=Msa0842660-mRNA-1:five_prime_utr;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19803870	19803974	19803870	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19803729	19803793	19803729	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19803551	19803641	19803551	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19802810	19802892	19802810	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19802449	19802582	19802449	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19802340	19802368	19802340	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19802073	19802172	19802073	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	CDS	19801795	19801895	19801795	ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4	three_prime_UTR	19800897	19801794	19800897	ID=Msa0842660-mRNA-1:three_prime_utr;Parent=Msa0842660-mRNA-1

Gene Sequence

>Msa0842660

ATGTTCCCGGCGGTTGCTCCTTATCCTTCATTCCGACCGACTTCCATTCGCTGCTCCAACGACCGACAGGCGCTTTTCAACCGCATTGCTCCTGTCTATGATAACCTGAATGATTTGCTGAGCTTGGGTCAGCACCGGATTTGGAAGCGAATGGCTGTTTCTTGGACTGAAGCAAAAAAGGGTGACCGTGTATTGGATGTCTGCTGTGGAAGTGGTGATTTATCCTTTCTCTTGTCTAACAAAGTTGCCTCCAATGGCAAGGTGATTGGTCTTGATTTCTCAAAGGAGCAACTAATGGTCGCCTCATCACGGTCGCTTTCAAAGAATTGCTTCAATAATATTGAGTGGGTTGAAGGTGATGCTCTTGACTTGCCGTTTTCTGATGCTTGGTTTGATGCAATCACTATGGGCTATGGTCTTCGAAATGTTGTTGATAAGCGTAAAGCCATGCAGGAAATTTTACGTGTGCTGAAGCCCGGTTCTACAGCATCTATCCTTGACTTTATGGAGTGGATGATTGACAATATTGTTGTCCCTGTAGCCTCTGTTTATGGCCTTTCAGATGACTACAAATATCTCAAAAGTTCAATAAGAGAATTTTTAACAGGGAAGGAATTGGAGAAACTTGCTTTAGAAGTAGGATTTTCTACTGCTCGACATTATGAGATCGGTGGAGGCCTCATGGGGTGCTTGGTAGCTAAACATTAG

Protein sequence

>Msa0842660

MFPAVAPYPSFRPTSIRCSNDRQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTEAKKGDRVLDVCCGSGDLSFLLSNKVASNGKVIGLDFSKEQLMVASSRSLSKNCFNNIEWVEGDALDLPFSDAWFDAITMGYGLRNVVDKRKAMQEILRVLKPGSTASILDFMEWMIDNIVVPVASVYGLSDDYKYLKSSIREFLTGKELEKLALEVGFSTARHYEIGGGLMGCLVAKH*