AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842660 MtrunA17_Chr5g0413181 90.541 148 3 1 99 235 1 148 3.44e-93 270
Msa0842660 MtrunA17_Chr5g0413191 98.851 87 1 0 1 87 25 111 6.08e-60 186
Msa0842660 MtrunA17_Chr4g0003041 30.769 234 132 6 25 228 49 282 7.68e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842660 AT1G23360.1 67.089 237 65 2 10 233 23 259 1.02e-112 324
Msa0842660 AT1G23360.2 61.392 158 48 2 89 233 1 158 2.71e-63 195
Msa0842660 AT1G23360.3 61.392 158 48 2 89 233 1 158 2.71e-63 195
Msa0842660 AT5G57300.3 27.083 240 136 4 25 230 48 282 4.86e-22 92.4
Msa0842660 AT5G57300.1 27.083 240 136 4 25 230 48 282 4.86e-22 92.4
Msa0842660 AT5G57300.4 27.083 240 136 4 25 230 48 282 4.86e-22 92.4
Msa0842660 AT5G57300.2 27.083 240 136 4 25 230 48 282 4.86e-22 92.4

Find 106 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATCTATCCTTGACTTTA+TGG 0.121647 5_4:-19802339 Msa0842660:intron
CCAAATGTACACTTCAATTA+TGG 0.127610 5_4:+19801446 None:intergenic
GTCCCTGTAGCCTCTGTTTA+TGG 0.157587 5_4:-19802126 Msa0842660:CDS
TTGTTGTGCATCTCTATATT+TGG 0.223777 5_4:-19801032 Msa0842660:three_prime_UTR
AACAAGATGCTCTTCATTCT+TGG 0.256604 5_4:-19801168 Msa0842660:three_prime_UTR
CAGGGGAGGTAGGAATTTAT+TGG 0.302595 5_4:+19801745 None:intergenic
CTGCCGTGCCACAAGTAAAT+TGG 0.325912 5_4:+19801365 None:intergenic
GCTTGGGTCAGCACCGGATT+TGG 0.335534 5_4:-19803755 Msa0842660:CDS
CCATAATTGAAGTGTACATT+TGG 0.335813 5_4:-19801446 Msa0842660:three_prime_UTR
CTAAACATTAGATGACATTT+AGG 0.336469 5_4:-19801783 Msa0842660:exon
TCTGCATTTCCATGGTTACC+TGG 0.340244 5_4:-19801315 Msa0842660:three_prime_UTR
GGAAGCGAATGGCTGTTTCT+TGG 0.344170 5_4:-19803734 Msa0842660:CDS
TATATTTATACAGCCTGAAC+AGG 0.347158 5_4:+19801726 None:intergenic
CAAATGTACACTTCAATTAT+GGG 0.351495 5_4:+19801447 None:intergenic
GCTGAATGATTTGCTGAGCT+TGG 0.375216 5_4:-19803772 Msa0842660:CDS
TTCTGATTGTTGTTCAACTA+AGG 0.384922 5_4:+19800918 Msa0842650:intron
ATCTAAGAAAGGTGGATTAG+AGG 0.385634 5_4:-19801195 Msa0842660:three_prime_UTR
AATTCCTACCTCCCCTGTTC+AGG 0.389107 5_4:-19801739 Msa0842660:three_prime_UTR
GAGAAACTTGCTTTAGAAGT+AGG 0.398667 5_4:-19801862 Msa0842660:CDS
TAATTCTATTTGCAGTTTCA+AGG 0.402300 5_4:-19801633 Msa0842660:three_prime_UTR
CAGCCATTCGCTTCCAAATC+CGG 0.402703 5_4:+19803742 None:intergenic
TGGAGGCCTCATGGGGTGCT+TGG 0.422234 5_4:-19801809 Msa0842660:CDS
CTGTGATGCAGGGAAGGAAT+TGG 0.426333 5_4:-19801884 Msa0842660:intron
TTGGTTTGATGCAATCACTA+TGG 0.429752 5_4:-19802518 Msa0842660:CDS
TTTCTCAAAGGAGCAACTAA+TGG 0.435316 5_4:-19802856 Msa0842660:CDS
GTCGCAATGAAGCGACCTCT+TGG 0.443714 5_4:-19801115 Msa0842660:three_prime_UTR
GAGATCGGTGGAGGCCTCAT+GGG 0.444479 5_4:-19801817 Msa0842660:CDS
CTGAATGATTTGCTGAGCTT+GGG 0.456434 5_4:-19803771 Msa0842660:CDS
AGAATTAACAGCAGAATGTC+AGG 0.456779 5_4:+19801649 None:intergenic
CAAGTAAATTGGCTTGGCTC+GGG 0.462885 5_4:+19801376 None:intergenic
ATGGAAGTCGGTCGGAATGA+AGG 0.467617 5_4:+19803928 None:intergenic
AGAAGAGCTTGCCTTGCCAT+TGG 0.469398 5_4:+19803539 None:intergenic
TTATTTGCTCTGCATTTCCA+TGG 0.471072 5_4:-19801323 Msa0842660:three_prime_UTR
TCTGTAGTAAATGCTAATCA+TGG 0.471302 5_4:-19801496 Msa0842660:three_prime_UTR
TGCTGAGCTTGGGTCAGCAC+CGG 0.478547 5_4:-19803761 Msa0842660:CDS
AGAGCTTGCCTTGCCATTGG+AGG 0.480628 5_4:+19803542 None:intergenic
GTACATCCTAGGTGGGTTGA+AGG 0.482364 5_4:-19802571 Msa0842660:intron
AGTTATGAGCTGCTACATAT+CGG 0.488938 5_4:-19801531 Msa0842660:three_prime_UTR
TTGTGTTGCAGAGATGTTCC+CGG 0.492822 5_4:-19803965 Msa0842660:exon
CTGCATTTCCATGGTTACCT+GGG 0.502516 5_4:-19801314 Msa0842660:three_prime_UTR
ACAAGTAAATTGGCTTGGCT+CGG 0.503158 5_4:+19801375 None:intergenic
TGAGATCGGTGGAGGCCTCA+TGG 0.504020 5_4:-19801818 Msa0842660:CDS
GAAAAGCGCCTGTCGGTCGT+TGG 0.508235 5_4:+19803897 None:intergenic
ATTTGGATCGAACAACTGTT+CGG 0.512715 5_4:-19801015 Msa0842660:three_prime_UTR
AGGCCATAAACAGAGGCTAC+AGG 0.514026 5_4:+19802123 None:intergenic
TTGGATGTCTGCTGTGGAAG+TGG 0.515717 5_4:-19803597 Msa0842660:CDS
AAGGATAAGGAGCAACCGCC+GGG 0.515863 5_4:+19803947 None:intergenic
TGGTTTGATGCAATCACTAT+GGG 0.517163 5_4:-19802517 Msa0842660:CDS
TCAAACCAAGCATCAGAAAA+CGG 0.523537 5_4:+19802532 None:intergenic
TCGCTGCTCCAACGACCGAC+AGG 0.524223 5_4:-19803905 Msa0842660:CDS
TCTAAGAAAGGTGGATTAGA+GGG 0.525624 5_4:-19801194 Msa0842660:three_prime_UTR
TGTAACGCCTTTGACATAGT+TGG 0.526764 5_4:-19801137 Msa0842660:three_prime_UTR
CGACATTATGAGATCGGTGG+AGG 0.533048 5_4:-19801826 Msa0842660:CDS
GTCGGTCGGAATGAAGGATA+AGG 0.536675 5_4:+19803934 None:intergenic
CAAATAGCTCTTTCTATCCC+AGG 0.541260 5_4:+19801297 Msa0842650:CDS
GTGCCACAAGTAAATTGGCT+TGG 0.542370 5_4:+19801370 None:intergenic
ATGGTACTCTCATCTAAGAA+AGG 0.546299 5_4:-19801206 Msa0842660:three_prime_UTR
GATGCAATCACTATGGGCTA+TGG 0.547081 5_4:-19802511 Msa0842660:CDS
AACTTTGTTAGACAAGAGAA+AGG 0.551476 5_4:+19803566 None:intergenic
CTTTGAAAGCGACCGTGATG+AGG 0.553016 5_4:+19802830 None:intergenic
TCTAACAAAGTTGCCTCCAA+TGG 0.553337 5_4:-19803555 Msa0842660:CDS
CATTCTTAACATCGCTATTG+CGG 0.553795 5_4:-19801055 Msa0842660:three_prime_UTR
ATGGGTCGCCACTTGTGTCA+TGG 0.554397 5_4:-19801235 Msa0842660:three_prime_UTR
AAGTCATACGAAAACATGAC+TGG 0.557528 5_4:+19801603 None:intergenic
CTTTCTATCCCAGGTAACCA+TGG 0.559485 5_4:+19801306 Msa0842650:exon
GAAGGATAAGGAGCAACCGC+CGG 0.567694 5_4:+19803946 None:intergenic
TGATAAGCGTAAAGCCATGC+AGG 0.572450 5_4:-19802473 Msa0842660:CDS
GATATTTGTAGTCATCTGAA+AGG 0.577823 5_4:+19802103 None:intergenic
TCGGTCGTTGGAGCAGCGAA+TGG 0.583040 5_4:+19803909 None:intergenic
GGCCATAAACAGAGGCTACA+GGG 0.586319 5_4:+19802124 None:intergenic
CACACGTAAAATTTCCTGCA+TGG 0.586402 5_4:+19802459 None:intergenic
GAGCCAAGCCAATTTACTTG+TGG 0.586689 5_4:-19801373 Msa0842660:three_prime_UTR
GCTCGGGATTATGACACTGA+AGG 0.588121 5_4:+19801392 None:intergenic
ACTGCTCGACATTATGAGAT+CGG 0.594791 5_4:-19801832 Msa0842660:CDS
ACAGCCTGAACAGGGGAGGT+AGG 0.595555 5_4:+19801735 None:intergenic
AAGCCAATTTACTTGTGGCA+CGG 0.596158 5_4:-19801368 Msa0842660:three_prime_UTR
ACTTGTGTCATGGAGCTCCA+TGG 0.596168 5_4:-19801225 Msa0842660:three_prime_UTR
GATTGGTCTTGATTTCTCAA+AGG 0.599953 5_4:-19802868 Msa0842660:CDS
ATATTTATACAGCCTGAACA+GGG 0.603256 5_4:+19801727 None:intergenic
ATTGCGACCAACTATGTCAA+AGG 0.606405 5_4:+19801130 Msa0842650:CDS
GTACTCTCATCTAAGAAAGG+TGG 0.608348 5_4:-19801203 Msa0842660:three_prime_UTR
ATTCTAAGAGTGATTCACAT+AGG 0.610633 5_4:+19801080 Msa0842650:CDS
CAAAGTTGCCTCCAATGGCA+AGG 0.615328 5_4:-19803550 Msa0842660:intron
GCACCGGATTTGGAAGCGAA+TGG 0.615773 5_4:-19803745 Msa0842660:CDS
TGCGGTTGAAAAGCGCCTGT+CGG 0.616608 5_4:+19803890 None:intergenic
GTCAGGCAATAAAAGAGCCA+TGG 0.616900 5_4:+19801666 None:intergenic
AGATCGGTGGAGGCCTCATG+GGG 0.618606 5_4:-19801816 Msa0842660:CDS
AACTAATGGTCGCCTCATCA+CGG 0.620553 5_4:-19802842 Msa0842660:CDS
CATTATAAACAAATGAACCA+TGG 0.627446 5_4:-19801683 Msa0842660:three_prime_UTR
CAGAAACTGATAAAATGCAA+TGG 0.628021 5_4:-19801421 Msa0842660:three_prime_UTR
TTGGAGCAGCGAATGGAAGT+CGG 0.628117 5_4:+19803916 None:intergenic
CGTGTATTGGATGTCTGCTG+TGG 0.636133 5_4:-19803603 Msa0842660:CDS
CACAGCAGACATCCAATACA+CGG 0.640805 5_4:+19803604 None:intergenic
TTTCTTAGATGAGAGTACCA+TGG 0.647966 5_4:+19801208 Msa0842650:CDS
ATGGAGCTCCATGACACAAG+TGG 0.648286 5_4:+19801227 Msa0842650:CDS
AAGGGTATACCATAAAGTCA+AGG 0.655157 5_4:+19802330 None:intergenic
AGCAGCGAATGGAAGTCGGT+CGG 0.656578 5_4:+19803920 None:intergenic
ATCTGAAAGGCCATAAACAG+AGG 0.659783 5_4:+19802116 None:intergenic
GCTCGACATTATGAGATCGG+TGG 0.666601 5_4:-19801829 Msa0842660:CDS
TTATACAGCCTGAACAGGGG+AGG 0.672102 5_4:+19801731 None:intergenic
TATTTATACAGCCTGAACAG+GGG 0.674103 5_4:+19801728 None:intergenic
CAATCAGAACAAAACAACAG+AGG 0.702172 5_4:-19800904 Msa0842660:three_prime_UTR
TAGCTACCAAGCACCCCATG+AGG 0.708176 5_4:+19801803 None:intergenic
AGGACTTCTATGCATCCAAG+AGG 0.711075 5_4:+19801100 Msa0842650:CDS
TATCATAGACAGGAGCAATG+CGG 0.761354 5_4:+19803872 None:intergenic
TGTTGCAGAGATGTTCCCGG+CGG 0.792432 5_4:-19803962 Msa0842660:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTATAGTAGTAAG+AGG - chr5_4:19802937-19802956 Msa0842660:intron 15.0%
!! ATCATTTCATTCTATTCTAA+TGG - chr5_4:19801232-19801251 Msa0842660:three_prime_UTR 20.0%
!! ATAATATTGCAAAAATGAGT+TGG + chr5_4:19801438-19801457 None:intergenic 20.0%
!!! TCATTTTTGCAATATTATGT+TGG - chr5_4:19801440-19801459 Msa0842660:three_prime_UTR 20.0%
!! TAAAATAGTTAAATGAGACA+TGG - chr5_4:19801472-19801491 Msa0842660:three_prime_UTR 20.0%
!! ATATAATTAATGTGTTGTGA+AGG - chr5_4:19801505-19801524 Msa0842660:three_prime_UTR 20.0%
!! TATAATTAATGTGTTGTGAA+GGG - chr5_4:19801506-19801525 Msa0842660:three_prime_UTR 20.0%
!! GTTAATGTATCTTGAATAAT+CGG + chr5_4:19801918-19801937 None:intergenic 20.0%
!! TTATTCAAGATACATTAACA+TGG - chr5_4:19801919-19801938 Msa0842660:intron 20.0%
!!! TTAGTGTTTTAGCTTTATAA+CGG + chr5_4:19802243-19802262 None:intergenic 20.0%
!!! TCAATAAGAGAATTTTTAAC+AGG - chr5_4:19802842-19802861 Msa0842660:CDS 20.0%
! TTGATTGTTGTGTTTGAATT+TGG - chr5_4:19801266-19801285 Msa0842660:three_prime_UTR 25.0%
!! AAGCTTTATAAACACTACAT+AGG + chr5_4:19801691-19801710 None:intergenic 25.0%
!! CAGCTTTATAAACACTAAAT+AGG + chr5_4:19801839-19801858 None:intergenic 25.0%
! ATCGGTTAATTGTTTAAATG+CGG + chr5_4:19801900-19801919 None:intergenic 25.0%
! AAGTTGTACATTAGTATCAT+TGG - chr5_4:19802289-19802308 Msa0842660:intron 25.0%
!! ATCATTGGTGATAGTATAAT+AGG - chr5_4:19802304-19802323 Msa0842660:intron 25.0%
! TTTAATCATTTGTACATCCT+AGG - chr5_4:19802332-19802351 Msa0842660:intron 25.0%
! CAACTCAATAACATATTGAT+TGG - chr5_4:19802503-19802522 Msa0842660:CDS 25.0%
!!! TTTGTTTTCAATTGAACTGA+AGG - chr5_4:19802865-19802884 Msa0842660:CDS 25.0%
! CTAAACATTAGATGACATTT+AGG - chr5_4:19803131-19803150 Msa0842660:intron 25.0%
! CATTATAAACAAATGAACCA+TGG - chr5_4:19803231-19803250 Msa0842660:intron 25.0%
! TAATTCTATTTGCAGTTTCA+AGG - chr5_4:19803281-19803300 Msa0842660:intron 25.0%
! CAAATGTACACTTCAATTAT+GGG + chr5_4:19803470-19803489 None:intergenic 25.0%
GAAAGAGAAAGAAAGAAGAA+GGG + chr5_4:19801075-19801094 Msa0842650:CDS 30.0%
AGAAAGAGAAAGAAAGAAGA+AGG + chr5_4:19801076-19801095 Msa0842650:CDS 30.0%
! ATTTGGTAACAGAGCAAAAA+AGG - chr5_4:19801283-19801302 Msa0842660:three_prime_UTR 30.0%
! TTTGGTAACAGAGCAAAAAA+GGG - chr5_4:19801284-19801303 Msa0842660:three_prime_UTR 30.0%
AACTTTGTTAGACAAGAGAA+AGG + chr5_4:19801351-19801370 None:intergenic 30.0%
TGGAATAAAATCGGGTTTAT+TGG - chr5_4:19801529-19801548 Msa0842660:three_prime_UTR 30.0%
AACCAACCCAAATTCTTTAT+CGG - chr5_4:19801752-19801771 Msa0842660:three_prime_UTR 30.0%
ACAAGACAACAAATCCTTTA+TGG - chr5_4:19801948-19801967 Msa0842660:intron 30.0%
TGCAAACAAAATGTCCATAA+AGG + chr5_4:19801965-19801984 None:intergenic 30.0%
ATCCCAAAAGATTCACAAAA+CGG + chr5_4:19802020-19802039 None:intergenic 30.0%
TCAATAATATTGAGTGAGCA+TGG - chr5_4:19802114-19802133 Msa0842660:CDS 30.0%
CAATAATATTGAGTGAGCAT+GGG - chr5_4:19802115-19802134 Msa0842660:CDS 30.0%
TCTCTCGTAAAAATACTTTC+AGG + chr5_4:19802174-19802193 None:intergenic 30.0%
GCAAAACATAAATGTTGCAA+GGG + chr5_4:19802605-19802624 None:intergenic 30.0%
GATATTTGTAGTCATCTGAA+AGG + chr5_4:19802814-19802833 None:intergenic 30.0%
!! CACAGGAGTATTATTAAGTT+AGG + chr5_4:19803015-19803034 None:intergenic 30.0%
ATATTTATACAGCCTGAACA+GGG + chr5_4:19803190-19803209 None:intergenic 30.0%
TATATTTATACAGCCTGAAC+AGG + chr5_4:19803191-19803210 None:intergenic 30.0%
TCTGTAGTAAATGCTAATCA+TGG - chr5_4:19803418-19803437 Msa0842660:intron 30.0%
CCAAATGTACACTTCAATTA+TGG + chr5_4:19803471-19803490 None:intergenic 30.0%
CCATAATTGAAGTGTACATT+TGG - chr5_4:19803468-19803487 Msa0842660:intron 30.0%
CAGAAACTGATAAAATGCAA+TGG - chr5_4:19803493-19803512 Msa0842660:intron 30.0%
! ATTCTAAGAGTGATTCACAT+AGG + chr5_4:19803837-19803856 None:intergenic 30.0%
TTGTTGTGCATCTCTATATT+TGG - chr5_4:19803882-19803901 Msa0842660:CDS 30.0%
! AAATTTTGCAAGATCAGACA+TGG + chr5_4:19803947-19803966 None:intergenic 30.0%
! TTCTGATTGTTGTTCAACTA+AGG + chr5_4:19803999-19804018 None:intergenic 30.0%
ATTCAGCTGCAACAATGAAA+AGG + chr5_4:19801129-19801148 Msa0842650:CDS 35.0%
AATTAATGTGTTGTGAAGGG+TGG - chr5_4:19801509-19801528 Msa0842660:three_prime_UTR 35.0%
TGTGAAGGGTGGAATAAAAT+CGG - chr5_4:19801520-19801539 Msa0842660:three_prime_UTR 35.0%
! TTGTTAGCTTCCAACACATT+CGG - chr5_4:19801614-19801633 Msa0842660:three_prime_UTR 35.0%
ATCCGATAAAGAATTTGGGT+TGG + chr5_4:19801757-19801776 None:intergenic 35.0%
TGGGATCCGATAAAGAATTT+GGG + chr5_4:19801761-19801780 None:intergenic 35.0%
TTGGGATCCGATAAAGAATT+TGG + chr5_4:19801762-19801781 None:intergenic 35.0%
! TCACCGTTTTGTGAATCTTT+TGG - chr5_4:19802014-19802033 Msa0842660:intron 35.0%
! CACCGTTTTGTGAATCTTTT+GGG - chr5_4:19802015-19802034 Msa0842660:intron 35.0%
!!! TTGTGAATCTTTTGGGATGT+AGG - chr5_4:19802022-19802041 Msa0842660:intron 35.0%
!! GATTGGTCTTGATTTCTCAA+AGG - chr5_4:19802046-19802065 Msa0842660:intron 35.0%
TTTCTCAAAGGAGCAACTAA+TGG - chr5_4:19802058-19802077 Msa0842660:intron 35.0%
TCAGGCTGTTATCTAATTTC+AGG + chr5_4:19802156-19802175 None:intergenic 35.0%
!! TAGCTTTATAACGGAGAACA+TGG + chr5_4:19802234-19802253 None:intergenic 35.0%
AATCATTTGTACATCCTAGG+TGG - chr5_4:19802335-19802354 Msa0842660:intron 35.0%
ATCATTTGTACATCCTAGGT+GGG - chr5_4:19802336-19802355 Msa0842660:intron 35.0%
TCAAACCAAGCATCAGAAAA+CGG + chr5_4:19802385-19802404 None:intergenic 35.0%
! TTGGTTTGATGCAATCACTA+TGG - chr5_4:19802396-19802415 Msa0842660:intron 35.0%
TGGTTTGATGCAATCACTAT+GGG - chr5_4:19802397-19802416 Msa0842660:intron 35.0%
AGCATCTATCCTTGACTTTA+TGG - chr5_4:19802575-19802594 Msa0842660:intron 35.0%
! AAGGGTATACCATAAAGTCA+AGG + chr5_4:19802587-19802606 None:intergenic 35.0%
CGCAAAACATAAATGTTGCA+AGG + chr5_4:19802606-19802625 None:intergenic 35.0%
CCAAAGAATCAAAAAGACGA+AGG + chr5_4:19802708-19802727 None:intergenic 35.0%
!! CCTTCGTCTTTTTGATTCTT+TGG - chr5_4:19802705-19802724 Msa0842660:intron 35.0%
!! TTTTGATTCTTTGGTGTGAG+CGG - chr5_4:19802714-19802733 Msa0842660:intron 35.0%
TTATCCGATCAAGCGTAAAT+TGG - chr5_4:19802891-19802910 Msa0842660:intron 35.0%
TGTACCAATTTACGCTTGAT+CGG + chr5_4:19802898-19802917 None:intergenic 35.0%
TAATAATACTCCTGTGATGC+AGG - chr5_4:19803019-19803038 Msa0842660:intron 35.0%
AATAATACTCCTGTGATGCA+GGG - chr5_4:19803020-19803039 Msa0842660:intron 35.0%
!! GAGAAACTTGCTTTAGAAGT+AGG - chr5_4:19803052-19803071 Msa0842660:intron 35.0%
TATTTATACAGCCTGAACAG+GGG + chr5_4:19803189-19803208 None:intergenic 35.0%
AGAATTAACAGCAGAATGTC+AGG + chr5_4:19803268-19803287 None:intergenic 35.0%
AAGTCATACGAAAACATGAC+TGG + chr5_4:19803314-19803333 None:intergenic 35.0%
AGTTATGAGCTGCTACATAT+CGG - chr5_4:19803383-19803402 Msa0842660:intron 35.0%
TTATTTGCTCTGCATTTCCA+TGG - chr5_4:19803591-19803610 Msa0842660:CDS 35.0%
! CAACTGAATCATCTGTTTTG+AGG - chr5_4:19803649-19803668 Msa0842660:intron 35.0%
!!! TCTGTTTTGAGGAGGTAAAA+TGG - chr5_4:19803660-19803679 Msa0842660:intron 35.0%
!!! CTGTTTTGAGGAGGTAAAAT+GGG - chr5_4:19803661-19803680 Msa0842660:intron 35.0%
!! TTTCTTAGATGAGAGTACCA+TGG + chr5_4:19803709-19803728 None:intergenic 35.0%
ATGGTACTCTCATCTAAGAA+AGG - chr5_4:19803708-19803727 Msa0842660:intron 35.0%
!! ATCTAAGAAAGGTGGATTAG+AGG - chr5_4:19803719-19803738 Msa0842660:intron 35.0%
!! TCTAAGAAAGGTGGATTAGA+GGG - chr5_4:19803720-19803739 Msa0842660:intron 35.0%
AACAAGATGCTCTTCATTCT+TGG - chr5_4:19803746-19803765 Msa0842660:CDS 35.0%
CATTCTTAACATCGCTATTG+CGG - chr5_4:19803859-19803878 Msa0842660:intron 35.0%
ATTTGGATCGAACAACTGTT+CGG - chr5_4:19803899-19803918 Msa0842660:CDS 35.0%
CAATCAGAACAAAACAACAG+AGG - chr5_4:19804010-19804029 Msa0842660:five_prime_UTR 35.0%
TATCATAGACAGGAGCAATG+CGG + chr5_4:19801045-19801064 Msa0842650:CDS 40.0%
! GCAACAATGAAAAGGTGTGA+AGG + chr5_4:19801121-19801140 Msa0842650:CDS 40.0%
!! CTGAATGATTTGCTGAGCTT+GGG - chr5_4:19801143-19801162 Msa0842660:three_prime_UTR 40.0%
AAAAAAGGGTGACCGTGTAT+TGG - chr5_4:19801298-19801317 Msa0842660:three_prime_UTR 40.0%
TCTAACAAAGTTGCCTCCAA+TGG - chr5_4:19801359-19801378 Msa0842660:three_prime_UTR 40.0%
TAGTTAAATGAGACATGGCG+AGG - chr5_4:19801477-19801496 Msa0842660:three_prime_UTR 40.0%
GTGAAGGGTGGAATAAAATC+GGG - chr5_4:19801521-19801540 Msa0842660:three_prime_UTR 40.0%
TGGAAATTCCACCTTCATTG+CGG - chr5_4:19801549-19801568 Msa0842660:three_prime_UTR 40.0%
GTGTTGGAAGCTAACAATGA+AGG + chr5_4:19801611-19801630 None:intergenic 40.0%
TGGGTGTGAATGAGTGAATT+TGG - chr5_4:19801642-19801661 Msa0842660:three_prime_UTR 40.0%
CTACATAGGTCGTATCTCTA+GGG + chr5_4:19801677-19801696 None:intergenic 40.0%
ACTACATAGGTCGTATCTCT+AGG + chr5_4:19801678-19801697 None:intergenic 40.0%
! TTTATCGGATCCCAACGTTT+TGG - chr5_4:19801767-19801786 Msa0842660:three_prime_UTR 40.0%
! TTATCGGATCCCAACGTTTT+GGG - chr5_4:19801768-19801787 Msa0842660:three_prime_UTR 40.0%
CCTTTCATACCCAAAACGTT+GGG + chr5_4:19801780-19801799 None:intergenic 40.0%
!! CCAACGTTTTGGGTATGAAA+GGG - chr5_4:19801778-19801797 Msa0842660:exon 40.0%
AAATAGGCCCATATCTCTGT+GGG + chr5_4:19801823-19801842 None:intergenic 40.0%
TAAATAGGCCCATATCTCTG+TGG + chr5_4:19801824-19801843 None:intergenic 40.0%
!!! TCTTTTGGGATGTAGGTGAT+TGG - chr5_4:19802029-19802048 Msa0842660:intron 40.0%
CACACGTAAAATTTCCTGCA+TGG + chr5_4:19802458-19802477 None:intergenic 40.0%
AGTTGAGATACAACAGCTAC+CGG + chr5_4:19802488-19802507 None:intergenic 40.0%
!!! CGTGCTACTTTTTACTTTCC+AGG - chr5_4:19802546-19802565 Msa0842660:CDS 40.0%
TTTGCGCTGCTTAAGTTTAG+AGG - chr5_4:19802620-19802639 Msa0842660:intron 40.0%
ATCTGAAAGGCCATAAACAG+AGG + chr5_4:19802801-19802820 None:intergenic 40.0%
ACTGCTCGACATTATGAGAT+CGG - chr5_4:19803082-19803101 Msa0842660:intron 40.0%
!! ACAAGTAAATTGGCTTGGCT+CGG + chr5_4:19803542-19803561 None:intergenic 40.0%
AAGCCAATTTACTTGTGGCA+CGG - chr5_4:19803546-19803565 Msa0842660:intron 40.0%
CAAATAGCTCTTTCTATCCC+AGG + chr5_4:19803620-19803639 None:intergenic 40.0%
!!! CTGAATCATCTGTTTTGAGG+AGG - chr5_4:19803652-19803671 Msa0842660:intron 40.0%
GTACTCTCATCTAAGAAAGG+TGG - chr5_4:19803711-19803730 Msa0842660:intron 40.0%
TGTAACGCCTTTGACATAGT+TGG - chr5_4:19803777-19803796 Msa0842660:intron 40.0%
ATTGCGACCAACTATGTCAA+AGG + chr5_4:19803787-19803806 None:intergenic 40.0%
!!! ACATGGAAGCATTTTCAGTC+GGG + chr5_4:19803930-19803949 None:intergenic 40.0%
!!! GACATGGAAGCATTTTCAGT+CGG + chr5_4:19803931-19803950 None:intergenic 40.0%
TTGTGTTGCAGAGATGTTCC+CGG - chr5_4:19800949-19800968 Msa0842660:three_prime_UTR 45.0%
!! GCTGAATGATTTGCTGAGCT+TGG - chr5_4:19801142-19801161 Msa0842660:three_prime_UTR 45.0%
CACAGCAGACATCCAATACA+CGG + chr5_4:19801313-19801332 Msa0842650:exon 45.0%
!! TTCCAACACATTCGGTGTGT+TGG - chr5_4:19801622-19801641 Msa0842660:three_prime_UTR 45.0%
!! TCCAACACATTCGGTGTGTT+GGG - chr5_4:19801623-19801642 Msa0842660:three_prime_UTR 45.0%
! GTCGTATCTCTAGGGAATGT+GGG + chr5_4:19801669-19801688 None:intergenic 45.0%
TACCCAACCATCACCTTACA+AGG - chr5_4:19801710-19801729 Msa0842660:three_prime_UTR 45.0%
! CACCTTGTAAGGTGATGGTT+GGG + chr5_4:19801715-19801734 None:intergenic 45.0%
GAAACCACCTTGTAAGGTGA+TGG + chr5_4:19801720-19801739 None:intergenic 45.0%
TCACCTTACAAGGTGGTTTC+CGG - chr5_4:19801720-19801739 Msa0842660:three_prime_UTR 45.0%
!! TGGGTTGGTTCTAACTCAAC+CGG + chr5_4:19801742-19801761 None:intergenic 45.0%
!! CCCAACGTTTTGGGTATGAA+AGG - chr5_4:19801777-19801796 Msa0842660:exon 45.0%
CCCTTTCATACCCAAAACGT+TGG + chr5_4:19801781-19801800 None:intergenic 45.0%
CACATTGCCCACAGAGATAT+GGG - chr5_4:19801813-19801832 Msa0842660:CDS 45.0%
AACTAATGGTCGCCTCATCA+CGG - chr5_4:19802072-19802091 Msa0842660:intron 45.0%
!!! ACTTGCCGTTTTCTGATGCT+TGG - chr5_4:19802377-19802396 Msa0842660:intron 45.0%
! GATGCAATCACTATGGGCTA+TGG - chr5_4:19802403-19802422 Msa0842660:intron 45.0%
TGATAAGCGTAAAGCCATGC+AGG - chr5_4:19802441-19802460 Msa0842660:intron 45.0%
! ATTTTACGTGTGCTGAAGCC+CGG - chr5_4:19802466-19802485 Msa0842660:CDS 45.0%
GTTGAGATACAACAGCTACC+GGG + chr5_4:19802487-19802506 None:intergenic 45.0%
AGGATAGATGCTGTAGAACC+TGG + chr5_4:19802567-19802586 None:intergenic 45.0%
CTAACCCCATTTCTCGTTCT+AGG - chr5_4:19802742-19802761 Msa0842660:intron 45.0%
CACTCCTAGAACGAGAAATG+GGG + chr5_4:19802749-19802768 None:intergenic 45.0%
CCACTCCTAGAACGAGAAAT+GGG + chr5_4:19802750-19802769 None:intergenic 45.0%
TCCACTCCTAGAACGAGAAA+TGG + chr5_4:19802751-19802770 None:intergenic 45.0%
CAGGGGAGGTAGGAATTTAT+TGG + chr5_4:19803172-19803191 None:intergenic 45.0%
GTCAGGCAATAAAAGAGCCA+TGG + chr5_4:19803251-19803270 None:intergenic 45.0%
!! CAAGTAAATTGGCTTGGCTC+GGG + chr5_4:19803541-19803560 None:intergenic 45.0%
GAGCCAAGCCAATTTACTTG+TGG - chr5_4:19803541-19803560 Msa0842660:intron 45.0%
GTGCCACAAGTAAATTGGCT+TGG + chr5_4:19803547-19803566 None:intergenic 45.0%
TCTGCATTTCCATGGTTACC+TGG - chr5_4:19803599-19803618 Msa0842660:CDS 45.0%
CTGCATTTCCATGGTTACCT+GGG - chr5_4:19803600-19803619 Msa0842660:CDS 45.0%
CTTTCTATCCCAGGTAACCA+TGG + chr5_4:19803611-19803630 None:intergenic 45.0%
AGGACTTCTATGCATCCAAG+AGG + chr5_4:19803817-19803836 None:intergenic 45.0%
!!! CATGGAAGCATTTTCAGTCG+GGG + chr5_4:19803929-19803948 None:intergenic 45.0%
GTCGGTCGGAATGAAGGATA+AGG + chr5_4:19800983-19801002 Msa0842650:intron 50.0%
ATGGAAGTCGGTCGGAATGA+AGG + chr5_4:19800989-19801008 Msa0842650:CDS 50.0%
TTGGAGCAGCGAATGGAAGT+CGG + chr5_4:19801001-19801020 Msa0842650:CDS 50.0%
CAGCCATTCGCTTCCAAATC+CGG + chr5_4:19801175-19801194 Msa0842650:CDS 50.0%
!! GGAAGCGAATGGCTGTTTCT+TGG - chr5_4:19801180-19801199 Msa0842660:three_prime_UTR 50.0%
CGTGTATTGGATGTCTGCTG+TGG - chr5_4:19801311-19801330 Msa0842660:three_prime_UTR 50.0%
TTGGATGTCTGCTGTGGAAG+TGG - chr5_4:19801317-19801336 Msa0842660:three_prime_UTR 50.0%
CAAAGTTGCCTCCAATGGCA+AGG - chr5_4:19801364-19801383 Msa0842660:three_prime_UTR 50.0%
AGAAGAGCTTGCCTTGCCAT+TGG + chr5_4:19801378-19801397 None:intergenic 50.0%
TGCCCCTAGCTGCCTAATTA+CGG - chr5_4:19801574-19801593 Msa0842660:three_prime_UTR 50.0%
ACGCCGTAATTAGGCAGCTA+GGG + chr5_4:19801580-19801599 None:intergenic 50.0%
AACGCCGTAATTAGGCAGCT+AGG + chr5_4:19801581-19801600 None:intergenic 50.0%
AGCTGCCTAATTACGGCGTT+TGG - chr5_4:19801581-19801600 Msa0842660:three_prime_UTR 50.0%
GCTGCCTAATTACGGCGTTT+GGG - chr5_4:19801582-19801601 Msa0842660:three_prime_UTR 50.0%
GCAACCCAAACGCCGTAATT+AGG + chr5_4:19801589-19801608 None:intergenic 50.0%
ACCCAACACACCGAATGTGT+TGG + chr5_4:19801627-19801646 None:intergenic 50.0%
! GGTCGTATCTCTAGGGAATG+TGG + chr5_4:19801670-19801689 None:intergenic 50.0%
! CCACCTTGTAAGGTGATGGT+TGG + chr5_4:19801716-19801735 None:intergenic 50.0%
CCAACCATCACCTTACAAGG+TGG - chr5_4:19801713-19801732 Msa0842660:three_prime_UTR 50.0%
CAACCGGAAACCACCTTGTA+AGG + chr5_4:19801726-19801745 None:intergenic 50.0%
CCATATCTCTGTGGGCAATG+TGG + chr5_4:19801815-19801834 None:intergenic 50.0%
CCACATTGCCCACAGAGATA+TGG - chr5_4:19801812-19801831 Msa0842660:CDS 50.0%
! CTTTGAAAGCGACCGTGATG+AGG + chr5_4:19802087-19802106 None:intergenic 50.0%
!! GTACATCCTAGGTGGGTTGA+AGG - chr5_4:19802343-19802362 Msa0842660:CDS 50.0%
! GATTCTTTGGTGTGAGCGGA+AGG - chr5_4:19802718-19802737 Msa0842660:intron 50.0%
!! CCCATTTCTCGTTCTAGGAG+TGG - chr5_4:19802747-19802766 Msa0842660:intron 50.0%
GTCCCTGTAGCCTCTGTTTA+TGG - chr5_4:19802788-19802807 Msa0842660:intron 50.0%
GGCCATAAACAGAGGCTACA+GGG + chr5_4:19802793-19802812 None:intergenic 50.0%
AGGCCATAAACAGAGGCTAC+AGG + chr5_4:19802794-19802813 None:intergenic 50.0%
ATACTCCTGTGATGCAGGGA+AGG - chr5_4:19803024-19803043 Msa0842660:intron 50.0%
CAATTCCTTCCCTGCATCAC+AGG + chr5_4:19803032-19803051 None:intergenic 50.0%
CTGTGATGCAGGGAAGGAAT+TGG - chr5_4:19803030-19803049 Msa0842660:intron 50.0%
GCTCGACATTATGAGATCGG+TGG - chr5_4:19803085-19803104 Msa0842660:intron 50.0%
CGACATTATGAGATCGGTGG+AGG - chr5_4:19803088-19803107 Msa0842660:intron 50.0%
AATTCCTACCTCCCCTGTTC+AGG - chr5_4:19803175-19803194 Msa0842660:intron 50.0%
TTATACAGCCTGAACAGGGG+AGG + chr5_4:19803186-19803205 None:intergenic 50.0%
GCTCGGGATTATGACACTGA+AGG + chr5_4:19803525-19803544 None:intergenic 50.0%
CTGCCGTGCCACAAGTAAAT+TGG + chr5_4:19803552-19803571 None:intergenic 50.0%
ATGGAGCTCCATGACACAAG+TGG + chr5_4:19803690-19803709 None:intergenic 50.0%
ACTTGTGTCATGGAGCTCCA+TGG - chr5_4:19803689-19803708 Msa0842660:intron 50.0%
TGTTGCAGAGATGTTCCCGG+CGG - chr5_4:19800952-19800971 Msa0842660:three_prime_UTR 55.0%
AAGGATAAGGAGCAACCGCC+GGG + chr5_4:19800970-19800989 Msa0842650:intron 55.0%
GAAGGATAAGGAGCAACCGC+CGG + chr5_4:19800971-19800990 Msa0842650:intron 55.0%
AGCAGCGAATGGAAGTCGGT+CGG + chr5_4:19800997-19801016 Msa0842650:CDS 55.0%
!! TGCGGTTGAAAAGCGCCTGT+CGG + chr5_4:19801027-19801046 Msa0842650:CDS 55.0%
GGGCGCACGTTATCATAGAC+AGG + chr5_4:19801055-19801074 Msa0842650:CDS 55.0%
GCACCGGATTTGGAAGCGAA+TGG - chr5_4:19801169-19801188 Msa0842660:three_prime_UTR 55.0%
AGAGCTTGCCTTGCCATTGG+AGG + chr5_4:19801375-19801394 None:intergenic 55.0%
CGCCGTAATTAGGCAGCTAG+GGG + chr5_4:19801579-19801598 None:intergenic 55.0%
GCATCACCTTCAACCCACCT+AGG + chr5_4:19802352-19802371 None:intergenic 55.0%
TAGCTACCAAGCACCCCATG+AGG + chr5_4:19803114-19803133 None:intergenic 55.0%
ATGGGTCGCCACTTGTGTCA+TGG - chr5_4:19803679-19803698 Msa0842660:intron 55.0%
GTCGCAATGAAGCGACCTCT+TGG - chr5_4:19803799-19803818 Msa0842660:intron 55.0%
TCGGTCGTTGGAGCAGCGAA+TGG + chr5_4:19801008-19801027 Msa0842650:CDS 60.0%
!! GAAAAGCGCCTGTCGGTCGT+TGG + chr5_4:19801020-19801039 Msa0842650:CDS 60.0%
TGCTGAGCTTGGGTCAGCAC+CGG - chr5_4:19801153-19801172 Msa0842660:three_prime_UTR 60.0%
! GCTTGGGTCAGCACCGGATT+TGG - chr5_4:19801159-19801178 Msa0842660:three_prime_UTR 60.0%
! CTAGGGGCACACCGCAATGA+AGG + chr5_4:19801563-19801582 None:intergenic 60.0%
TGAGATCGGTGGAGGCCTCA+TGG - chr5_4:19803096-19803115 Msa0842660:intron 60.0%
GAGATCGGTGGAGGCCTCAT+GGG - chr5_4:19803097-19803116 Msa0842660:intron 60.0%
AGATCGGTGGAGGCCTCATG+GGG - chr5_4:19803098-19803117 Msa0842660:intron 60.0%
ACAGCCTGAACAGGGGAGGT+AGG + chr5_4:19803182-19803201 None:intergenic 60.0%
TCGCTGCTCCAACGACCGAC+AGG - chr5_4:19801009-19801028 Msa0842660:three_prime_UTR 65.0%
GGGGCACACCGCAATGAAGG+TGG + chr5_4:19801560-19801579 None:intergenic 65.0%
! TGGAGGCCTCATGGGGTGCT+TGG - chr5_4:19803105-19803124 Msa0842660:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19800897 19804039 19800897 ID=Msa0842660;Name=Msa0842660
chr5_4 mRNA 19800897 19804039 19800897 ID=Msa0842660-mRNA-1;Parent=Msa0842660;Name=Msa0842660-mRNA-1;_AED=0.11;_eAED=0.11;_QI=65|1|1|1|1|1|8|898|235
chr5_4 exon 19800897 19801895 19800897 ID=Msa0842660-mRNA-1:exon:8262;Parent=Msa0842660-mRNA-1
chr5_4 exon 19802073 19802172 19802073 ID=Msa0842660-mRNA-1:exon:8261;Parent=Msa0842660-mRNA-1
chr5_4 exon 19802340 19802368 19802340 ID=Msa0842660-mRNA-1:exon:8260;Parent=Msa0842660-mRNA-1
chr5_4 exon 19802449 19802582 19802449 ID=Msa0842660-mRNA-1:exon:8259;Parent=Msa0842660-mRNA-1
chr5_4 exon 19802810 19802892 19802810 ID=Msa0842660-mRNA-1:exon:8258;Parent=Msa0842660-mRNA-1
chr5_4 exon 19803551 19803641 19803551 ID=Msa0842660-mRNA-1:exon:8257;Parent=Msa0842660-mRNA-1
chr5_4 exon 19803729 19803793 19803729 ID=Msa0842660-mRNA-1:exon:8256;Parent=Msa0842660-mRNA-1
chr5_4 exon 19803870 19804039 19803870 ID=Msa0842660-mRNA-1:exon:8255;Parent=Msa0842660-mRNA-1
chr5_4 five_prime_UTR 19803975 19804039 19803975 ID=Msa0842660-mRNA-1:five_prime_utr;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19803870 19803974 19803870 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19803729 19803793 19803729 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19803551 19803641 19803551 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19802810 19802892 19802810 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19802449 19802582 19802449 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19802340 19802368 19802340 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19802073 19802172 19802073 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 CDS 19801795 19801895 19801795 ID=Msa0842660-mRNA-1:cds;Parent=Msa0842660-mRNA-1
chr5_4 three_prime_UTR 19800897 19801794 19800897 ID=Msa0842660-mRNA-1:three_prime_utr;Parent=Msa0842660-mRNA-1
Gene Sequence

>Msa0842660

ATGTTCCCGGCGGTTGCTCCTTATCCTTCATTCCGACCGACTTCCATTCGCTGCTCCAACGACCGACAGGCGCTTTTCAACCGCATTGCTCCTGTCTATGATAACCTGAATGATTTGCTGAGCTTGGGTCAGCACCGGATTTGGAAGCGAATGGCTGTTTCTTGGACTGAAGCAAAAAAGGGTGACCGTGTATTGGATGTCTGCTGTGGAAGTGGTGATTTATCCTTTCTCTTGTCTAACAAAGTTGCCTCCAATGGCAAGGTGATTGGTCTTGATTTCTCAAAGGAGCAACTAATGGTCGCCTCATCACGGTCGCTTTCAAAGAATTGCTTCAATAATATTGAGTGGGTTGAAGGTGATGCTCTTGACTTGCCGTTTTCTGATGCTTGGTTTGATGCAATCACTATGGGCTATGGTCTTCGAAATGTTGTTGATAAGCGTAAAGCCATGCAGGAAATTTTACGTGTGCTGAAGCCCGGTTCTACAGCATCTATCCTTGACTTTATGGAGTGGATGATTGACAATATTGTTGTCCCTGTAGCCTCTGTTTATGGCCTTTCAGATGACTACAAATATCTCAAAAGTTCAATAAGAGAATTTTTAACAGGGAAGGAATTGGAGAAACTTGCTTTAGAAGTAGGATTTTCTACTGCTCGACATTATGAGATCGGTGGAGGCCTCATGGGGTGCTTGGTAGCTAAACATTAG

Protein sequence

>Msa0842660

MFPAVAPYPSFRPTSIRCSNDRQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTEAKKGDRVLDVCCGSGDLSFLLSNKVASNGKVIGLDFSKEQLMVASSRSLSKNCFNNIEWVEGDALDLPFSDAWFDAITMGYGLRNVVDKRKAMQEILRVLKPGSTASILDFMEWMIDNIVVPVASVYGLSDDYKYLKSSIREFLTGKELEKLALEVGFSTARHYEIGGGLMGCLVAKH*