Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980910 | XP_003618972.1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980910 | sp|Q9S7A0|DHE3_ARATH | 88.509 | 409 | 47 | 0 | 1 | 409 | 1 | 409 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980910 | G7KPN3 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 842 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143630 | Msa0980910 | 0.814808 | 1.275888e-51 | -8.615850e-47 |
| Msa0980910 | Msa1077060 | 0.809456 | 1.875703e-50 | -8.615850e-47 |
| Msa0980910 | Msa1122790 | 0.812853 | 3.440618e-51 | -8.615850e-47 |
| Msa0980910 | Msa1350700 | 0.815005 | 1.153764e-51 | -8.615850e-47 |
| Msa0980910 | Msa1360260 | 0.804454 | 2.143209e-49 | -8.615850e-47 |
| Msa0266220 | Msa0980910 | 0.801621 | 8.257290e-49 | -8.615850e-47 |
| Msa0580850 | Msa0980910 | 0.800182 | 1.625155e-48 | -8.615850e-47 |
| Msa0888980 | Msa0980910 | 0.916790 | 1.165831e-85 | -8.615850e-47 |
| Msa0944620 | Msa0980910 | 0.889988 | 1.477809e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980910 | MtrunA17_Chr6g0461461 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 842 |
| Msa0980910 | MtrunA17_Chr7g0253311 | 90.268 | 411 | 40 | 0 | 1 | 411 | 1 | 411 | 0.0 | 786 |
| Msa0980910 | MtrunA17_Chr5g0399821 | 79.562 | 411 | 84 | 0 | 1 | 411 | 1 | 411 | 0.0 | 702 |
| Msa0980910 | MtrunA17_Chr4g0055521 | 79.562 | 411 | 84 | 0 | 1 | 411 | 1 | 411 | 0.0 | 694 |
| Msa0980910 | MtrunA17_Chr8g0341541 | 27.346 | 373 | 258 | 4 | 16 | 375 | 224 | 596 | 4.76e-36 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980910 | AT3G03910.1 | 88.509 | 409 | 47 | 0 | 1 | 409 | 1 | 409 | 0.0 | 775 |
| Msa0980910 | AT5G18170.1 | 87.591 | 411 | 51 | 0 | 1 | 411 | 1 | 411 | 0.0 | 771 |
| Msa0980910 | AT5G07440.2 | 79.319 | 411 | 85 | 0 | 1 | 411 | 1 | 411 | 0.0 | 701 |
| Msa0980910 | AT5G07440.1 | 79.319 | 411 | 85 | 0 | 1 | 411 | 1 | 411 | 0.0 | 701 |
| Msa0980910 | AT3G03910.2 | 89.714 | 350 | 36 | 0 | 1 | 350 | 1 | 350 | 0.0 | 664 |
| Msa0980910 | AT5G07440.3 | 78.716 | 296 | 63 | 0 | 1 | 296 | 1 | 296 | 1.35e-178 | 500 |
| Msa0980910 | AT1G51720.1 | 27.989 | 368 | 243 | 5 | 24 | 375 | 235 | 596 | 2.73e-34 | 135 |
| Msa0980910 | AT1G51720.3 | 27.989 | 368 | 243 | 5 | 24 | 375 | 235 | 596 | 2.73e-34 | 135 |
| Msa0980910 | AT1G51720.2 | 28.571 | 322 | 208 | 5 | 24 | 329 | 235 | 550 | 6.26e-33 | 130 |
| Msa0980910 | AT1G51720.4 | 29.577 | 213 | 150 | 0 | 24 | 236 | 235 | 447 | 2.01e-24 | 105 |
Find 114 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATATATATAGCTATTT+TGG | 0.098915 | 6_4:-19569333 | None:intergenic |
| TATCAATATCCCTATAATTT+AGG | 0.133817 | 6_4:-19573340 | None:intergenic |
| CAGAAAATTCATGATCTTAT+TGG | 0.148809 | 6_4:+19570403 | Msa0980910:CDS |
| CATTTACATCCCTAAATTAT+AGG | 0.168314 | 6_4:+19573330 | Msa0980910:three_prime_UTR |
| GGCTGCTTCCACTATAAATT+TGG | 0.168389 | 6_4:-19572395 | None:intergenic |
| AATTGATCCCAAGTCAATTT+TGG | 0.187815 | 6_4:+19571668 | Msa0980910:CDS |
| TATCAAACGTTTCAGGGTTT+TGG | 0.213422 | 6_4:+19571477 | Msa0980910:intron |
| GAGGCTTTGCTTAATGAATA+TGG | 0.226245 | 6_4:+19570859 | Msa0980910:CDS |
| AAAGAGAACAGAGGAATTAA+AGG | 0.232542 | 6_4:+19571627 | Msa0980910:CDS |
| TAAGTTGGCCTCTAGGCTTT+TGG | 0.233956 | 6_4:+19569481 | Msa0980910:CDS |
| GATTCCATTCAGAGAAATTA+AGG | 0.243391 | 6_4:+19569535 | Msa0980910:CDS |
| GCCAAAGTTCCATCATCTTT+AGG | 0.261182 | 6_4:-19569932 | None:intergenic |
| TGATGTTCCTGCACCTGATA+TGG | 0.264000 | 6_4:+19570435 | Msa0980910:CDS |
| TGGCTACATATGTTGGATTC+AGG | 0.271638 | 6_4:+19569951 | Msa0980910:CDS |
| CCAAAGTTCCATCATCTTTA+GGG | 0.278732 | 6_4:-19569931 | None:intergenic |
| ATCAATATCCCTATAATTTA+GGG | 0.285229 | 6_4:-19573339 | None:intergenic |
| ATTTACATCCCTAAATTATA+GGG | 0.293169 | 6_4:+19573331 | Msa0980910:three_prime_UTR |
| TATCTGATCCCTCCTTTCAT+TGG | 0.293204 | 6_4:-19569998 | None:intergenic |
| TTTCACATCTTTGAAACCTT+TGG | 0.330788 | 6_4:-19573164 | None:intergenic |
| CCAGACATATATGCAAATTC+AGG | 0.335620 | 6_4:+19572565 | Msa0980910:CDS |
| CATAAGTAACTTGTTCTTCA+AGG | 0.337198 | 6_4:+19573486 | Msa0980910:three_prime_UTR |
| ATCTGATCCCTCCTTTCATT+GGG | 0.338093 | 6_4:-19569997 | None:intergenic |
| TTTAAGCTTCCCAACCTCTA+AGG | 0.338153 | 6_4:-19573267 | None:intergenic |
| TGTGGTCCTGTTCCCATATC+AGG | 0.339231 | 6_4:-19570448 | None:intergenic |
| GCTAATGCATTCACTTCATC+TGG | 0.354567 | 6_4:-19570256 | None:intergenic |
| GATGAGTATTCAAAATTTCA+TGG | 0.363676 | 6_4:+19570657 | Msa0980910:CDS |
| AGAGGAATTAAAGGATTTCA+TGG | 0.367534 | 6_4:+19571636 | Msa0980910:CDS |
| AAACTAACCTCATCAGCATC+TGG | 0.382033 | 6_4:-19572433 | None:intergenic |
| GCAGTAGCAAATTTACCATA+TGG | 0.388893 | 6_4:+19570301 | Msa0980910:CDS |
| TGCACAATTAATAAATGAAA+AGG | 0.394871 | 6_4:+19571518 | Msa0980910:CDS |
| TGGTCAACGGTTTGTTATAC+AGG | 0.395946 | 6_4:+19570894 | Msa0980910:CDS |
| CTTACCTTAATTTCTCTGAA+TGG | 0.404941 | 6_4:-19569539 | None:intergenic |
| ATCTGGGTCAGTTGGGTGAT+TGG | 0.405284 | 6_4:-19572416 | None:intergenic |
| GTTCTTATCCCTGCTGCTCT+TGG | 0.407385 | 6_4:+19571705 | Msa0980910:CDS |
| GCAAGGGCCACTGTCCTTAG+AGG | 0.408079 | 6_4:+19573253 | Msa0980910:CDS |
| TTTGAATACTTAAGTAGGCT+TGG | 0.409262 | 6_4:-19571606 | None:intergenic |
| GAATATGGAAAGAGTGTATC+TGG | 0.410289 | 6_4:+19570874 | Msa0980910:CDS |
| GGCCAACTTAAAGTTCCTAT+TGG | 0.416568 | 6_4:-19569468 | None:intergenic |
| CCTGAATTTGCATATATGTC+TGG | 0.422712 | 6_4:-19572565 | None:intergenic |
| CCCTAAAGATGATGGAACTT+TGG | 0.427048 | 6_4:+19569931 | Msa0980910:CDS |
| GTCAACCCCTATACCTCCTT+TGG | 0.447730 | 6_4:-19570329 | None:intergenic |
| GATTAAAGCCAAATTTATAG+TGG | 0.447740 | 6_4:+19572387 | Msa0980910:CDS |
| CTCTTGGTGGTGTCATCAAT+AGG | 0.450663 | 6_4:+19571721 | Msa0980910:CDS |
| GGAACTTTAAGTTGGCCTCT+AGG | 0.454303 | 6_4:+19569474 | Msa0980910:CDS |
| TAGGGATGTAAATGCAAGAA+TGG | 0.456390 | 6_4:-19573321 | None:intergenic |
| ATTCATGTGGAATGAAGAAA+AGG | 0.460849 | 6_4:+19573114 | Msa0980910:CDS |
| TGAGTGTTTCTGAGTTAGAA+AGG | 0.462878 | 6_4:+19570362 | Msa0980910:CDS |
| GGCCACTGTCCTTAGAGGTT+GGG | 0.464668 | 6_4:+19573258 | Msa0980910:CDS |
| CACTCTCCTGCAGTAGTGAC+AGG | 0.469883 | 6_4:+19570681 | Msa0980910:CDS |
| TACCAATAGGAACTTTAAGT+TGG | 0.473029 | 6_4:+19569466 | Msa0980910:CDS |
| CCTGCACCTGATATGGGAAC+AGG | 0.473655 | 6_4:+19570442 | Msa0980910:CDS |
| CATCAGCATCTGGGTCAGTT+GGG | 0.474480 | 6_4:-19572423 | None:intergenic |
| CAGTAGCAAATTTACCATAT+GGG | 0.476254 | 6_4:+19570302 | Msa0980910:CDS |
| CTAGGAAGAGATGCAGCTAC+AGG | 0.476509 | 6_4:+19570814 | Msa0980910:CDS |
| AAGGATCTTGGTGGATCTCT+AGG | 0.477089 | 6_4:+19570796 | Msa0980910:intron |
| CTTATCCCTGCTGCTCTTGG+TGG | 0.477398 | 6_4:+19571708 | Msa0980910:CDS |
| ATGCACTAGCAGCTACCAAT+AGG | 0.482916 | 6_4:+19569453 | Msa0980910:CDS |
| ATCTTCAACCAAAATTGACT+TGG | 0.484698 | 6_4:-19571676 | None:intergenic |
| GATGTTCCTGCACCTGATAT+GGG | 0.484802 | 6_4:+19570436 | Msa0980910:CDS |
| GGAACTTTGGCTACATATGT+TGG | 0.485022 | 6_4:+19569944 | Msa0980910:CDS |
| TCATCAGCATCTGGGTCAGT+TGG | 0.487608 | 6_4:-19572424 | None:intergenic |
| GTAGCTGCTAGTGCATTCAT+TGG | 0.488941 | 6_4:-19569446 | None:intergenic |
| TCTTGAATATCTCTTACTAA+AGG | 0.494262 | 6_4:+19569394 | Msa0980910:five_prime_UTR |
| ACATAATTGCGATCTTCGTA+TGG | 0.498143 | 6_4:+19573201 | Msa0980910:CDS |
| AGAGATGCAGCTACAGGAAG+AGG | 0.503016 | 6_4:+19570820 | Msa0980910:CDS |
| ATGACACCACCAAGAGCAGC+AGG | 0.506954 | 6_4:-19571714 | None:intergenic |
| GGGGTGCCAAAGGAGGTATA+GGG | 0.507760 | 6_4:+19570323 | Msa0980910:CDS |
| TAGCTACTTTGAGTGGGTCC+AGG | 0.509179 | 6_4:+19572600 | Msa0980910:CDS |
| GGGCCACTGTCCTTAGAGGT+TGG | 0.521012 | 6_4:+19573257 | Msa0980910:CDS |
| TGCTAGTGCATTCATTGGTA+AGG | 0.522896 | 6_4:-19569441 | None:intergenic |
| GCACAATTAATAAATGAAAA+GGG | 0.531317 | 6_4:+19571519 | Msa0980910:CDS |
| TGTAGCATCCCTAAAGATGA+TGG | 0.531935 | 6_4:+19569923 | Msa0980910:CDS |
| GGGTGCCAAAGGAGGTATAG+GGG | 0.533576 | 6_4:+19570324 | Msa0980910:CDS |
| CCTGTTCCCATATCAGGTGC+AGG | 0.535228 | 6_4:-19570442 | None:intergenic |
| AACTCTAGAGGCCCAATGAA+AGG | 0.546723 | 6_4:+19569986 | Msa0980910:CDS |
| ACGGTTAACTGCAAGTGTAA+AGG | 0.546868 | 6_4:-19573227 | None:intergenic |
| TTACAGTTAGCTACTTTGAG+TGG | 0.548473 | 6_4:+19572593 | Msa0980910:CDS |
| AGTAGCAAATTTACCATATG+GGG | 0.548835 | 6_4:+19570303 | Msa0980910:CDS |
| TCTTCAACCAAAATTGACTT+GGG | 0.548986 | 6_4:-19571675 | None:intergenic |
| TCAGAAACACTCAACTCTGA+AGG | 0.550663 | 6_4:-19570352 | None:intergenic |
| CATTAGCACAACTAATGACA+TGG | 0.551350 | 6_4:+19570272 | Msa0980910:CDS |
| AACTAACCTCATCAGCATCT+GGG | 0.553542 | 6_4:-19572432 | None:intergenic |
| TACAGTTAGCTACTTTGAGT+GGG | 0.554093 | 6_4:+19572594 | Msa0980910:CDS |
| GTTGCTGTGAGTGATATAAC+AGG | 0.557965 | 6_4:+19571552 | Msa0980910:CDS |
| AGTAAGAGATATTCAAGATG+TGG | 0.558831 | 6_4:-19569389 | None:intergenic |
| TTGCAGTTAACCGTGTAGCA+AGG | 0.571162 | 6_4:+19573236 | Msa0980910:CDS |
| GGAGCTATAAAGAATAGTAA+TGG | 0.572306 | 6_4:+19571573 | Msa0980910:CDS |
| TGCAGTTAACCGTGTAGCAA+GGG | 0.572335 | 6_4:+19573237 | Msa0980910:CDS |
| AGGTGTCCTCTTTGCAACTG+AGG | 0.584722 | 6_4:+19570840 | Msa0980910:CDS |
| TTTGAATGCAGACAATGGCA+TGG | 0.592465 | 6_4:+19570628 | Msa0980910:intron |
| CAGAAACACTCAACTCTGAA+GGG | 0.597555 | 6_4:-19570351 | None:intergenic |
| AATTTGCATATATGTCTGGA+AGG | 0.603948 | 6_4:-19572561 | None:intergenic |
| AACTGACCCAGATGCTGATG+AGG | 0.606496 | 6_4:+19572426 | Msa0980910:CDS |
| TTAAAGACATACATGACCAA+AGG | 0.614432 | 6_4:+19573148 | Msa0980910:CDS |
| CTAGAGGCCCAATGAAAGGA+GGG | 0.614774 | 6_4:+19569990 | Msa0980910:CDS |
| GCAAAGCCTCAGTTGCAAAG+AGG | 0.616452 | 6_4:-19570846 | None:intergenic |
| AGAACATACAAGGATTCATG+TGG | 0.616462 | 6_4:+19573101 | Msa0980910:intron |
| CATAATTGCGATCTTCGTAT+GGG | 0.616881 | 6_4:+19573202 | Msa0980910:CDS |
| ATTCAACATGATAACTCTAG+AGG | 0.617647 | 6_4:+19569974 | Msa0980910:CDS |
| GACATATATGCAAATTCAGG+AGG | 0.618468 | 6_4:+19572568 | Msa0980910:CDS |
| TGATATGGGAACAGGACCAC+AGG | 0.619474 | 6_4:+19570450 | Msa0980910:CDS |
| GAAAGAGTGTATCTGGTCAA+CGG | 0.628658 | 6_4:+19570881 | Msa0980910:CDS |
| TCTAGAGGCCCAATGAAAGG+AGG | 0.629459 | 6_4:+19569989 | Msa0980910:CDS |
| GGACAGTGGCCCTTGCTACA+CGG | 0.632846 | 6_4:-19573246 | None:intergenic |
| CTGTCACTACTGCAGGAGAG+TGG | 0.635216 | 6_4:-19570680 | None:intergenic |
| CAATTAATAAATGAAAAGGG+TGG | 0.642073 | 6_4:+19571522 | Msa0980910:CDS |
| GAATATAAATAACCTCAGGA+TGG | 0.644448 | 6_4:-19570021 | None:intergenic |
| GGAATTAAAGGATTTCATGG+TGG | 0.677893 | 6_4:+19571639 | Msa0980910:CDS |
| TTCCCAACCTCTAAGGACAG+TGG | 0.686018 | 6_4:-19573260 | None:intergenic |
| ATCCAATCCCAAAAGCCTAG+AGG | 0.686949 | 6_4:-19569489 | None:intergenic |
| GTAGCAAATTTACCATATGG+GGG | 0.712264 | 6_4:+19570304 | Msa0980910:CDS |
| AAGTATTCAAAAGAGAACAG+AGG | 0.716008 | 6_4:+19571618 | Msa0980910:CDS |
| TGACACCACCAAGAGCAGCA+GGG | 0.727129 | 6_4:-19571713 | None:intergenic |
| AGGGATCAGATACCATCCTG+AGG | 0.734957 | 6_4:+19570009 | Msa0980910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATATATAGCTATTTT+GGG | - | chr6_4:19569335-19569354 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAACTAATGTAT+TGG | + | chr6_4:19570215-19570234 | Msa0980910:intron | 10.0% |
| !!! | TAATTTAATTTACTTACTAT+TGG | - | chr6_4:19570711-19570730 | None:intergenic | 10.0% |
| !! | TAAAAAATTAGAAATGAAAT+TGG | - | chr6_4:19570767-19570786 | None:intergenic | 10.0% |
| !!! | TAATTTTTTATTTTGAATGA+AGG | + | chr6_4:19570777-19570796 | Msa0980910:intron | 10.0% |
| !!! | TTATATATATAGCTATTTTG+GGG | - | chr6_4:19569334-19569353 | None:intergenic | 15.0% |
| !!! | GTTTATATATATAGCTATTT+TGG | - | chr6_4:19569336-19569355 | None:intergenic | 15.0% |
| !! | ATTTACCATACAATAAAATA+TGG | - | chr6_4:19569827-19569846 | None:intergenic | 15.0% |
| !! | ATTCATTATATGTTAATGTT+TGG | + | chr6_4:19570970-19570989 | Msa0980910:intron | 15.0% |
| !! | TCATCAAAAATATTACTAAT+GGG | - | chr6_4:19571440-19571459 | None:intergenic | 15.0% |
| !! | TTCATCAAAAATATTACTAA+TGG | - | chr6_4:19571441-19571460 | None:intergenic | 15.0% |
| !! | TTAAAATAGAAATTTGATTC+TGG | - | chr6_4:19571822-19571841 | None:intergenic | 15.0% |
| !!! | ATTTTAGTAAATGATCAAAA+TGG | - | chr6_4:19572629-19572648 | None:intergenic | 15.0% |
| !! | GTAAAATAATTATAAACTGA+CGG | - | chr6_4:19572747-19572766 | None:intergenic | 15.0% |
| !! | TTTAGATTGAATAAAAACAA+TGG | + | chr6_4:19572905-19572924 | Msa0980910:intron | 15.0% |
| !! | TTTCATGTAACTATATTATA+AGG | + | chr6_4:19573054-19573073 | Msa0980910:intron | 15.0% |
| !! | TTGCAAAAAATATTAAGAAA+TGG | - | chr6_4:19573428-19573447 | None:intergenic | 15.0% |
| !!! | ATGTTGTTTAATGAAAATTC+AGG | + | chr6_4:19569895-19569914 | Msa0980910:intron | 20.0% |
| !! | TGACTGAATAACTAATTTAT+TGG | + | chr6_4:19570075-19570094 | Msa0980910:intron | 20.0% |
| !! | AATGTATTGGATTATTATGT+AGG | + | chr6_4:19570228-19570247 | Msa0980910:intron | 20.0% |
| !!! | ATGTCATGTTTTTCATATTA+TGG | + | chr6_4:19571033-19571052 | Msa0980910:intron | 20.0% |
| !! | TAACATTATGTGAATTAGTT+TGG | + | chr6_4:19571159-19571178 | Msa0980910:intron | 20.0% |
| !!! | ATCTTTGAAACAAATTTAGT+AGG | - | chr6_4:19571259-19571278 | None:intergenic | 20.0% |
| !! | TGCACAATTAATAAATGAAA+AGG | + | chr6_4:19571518-19571537 | Msa0980910:CDS | 20.0% |
| !! | GCACAATTAATAAATGAAAA+GGG | + | chr6_4:19571519-19571538 | Msa0980910:CDS | 20.0% |
| !! | TATAATAATTCTGTTACGAT+CGG | - | chr6_4:19571945-19571964 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTCTCAACTTT+TGG | + | chr6_4:19572338-19572357 | Msa0980910:intron | 20.0% |
| !!! | ATCTCTTTTTGTTTGATAAA+GGG | - | chr6_4:19572476-19572495 | None:intergenic | 20.0% |
| !!! | AATCTCTTTTTGTTTGATAA+AGG | - | chr6_4:19572477-19572496 | None:intergenic | 20.0% |
| !!! | AACATTCAAATGTTTTTAAC+TGG | + | chr6_4:19572497-19572516 | Msa0980910:intron | 20.0% |
| !!! | ACATTCAAATGTTTTTAACT+GGG | + | chr6_4:19572498-19572517 | Msa0980910:intron | 20.0% |
| !!! | TTTTCAAAATCTGCAAAATA+AGG | - | chr6_4:19572525-19572544 | None:intergenic | 20.0% |
| !!! | AATAAAAACAATGGTCATTT+TGG | + | chr6_4:19572914-19572933 | Msa0980910:intron | 20.0% |
| !! | ATTTACATCCCTAAATTATA+GGG | + | chr6_4:19573331-19573350 | Msa0980910:three_prime_UTR | 20.0% |
| !! | ATCAATATCCCTATAATTTA+GGG | - | chr6_4:19573342-19573361 | None:intergenic | 20.0% |
| !! | TATCAATATCCCTATAATTT+AGG | - | chr6_4:19573343-19573362 | None:intergenic | 20.0% |
| ! | TCTTGAATATCTCTTACTAA+AGG | + | chr6_4:19569394-19569413 | Msa0980910:five_prime_UTR | 25.0% |
| ! | ATGAAAACAAGATATTTGTG+TGG | - | chr6_4:19569570-19569589 | None:intergenic | 25.0% |
| ! | TTGTTTAATGAAAATTCAGG+TGG | + | chr6_4:19569898-19569917 | Msa0980910:intron | 25.0% |
| ! | TCAAGAATATAAATAACCTC+AGG | - | chr6_4:19570028-19570047 | None:intergenic | 25.0% |
| ! | CAGAAAATTCATGATCTTAT+TGG | + | chr6_4:19570403-19570422 | Msa0980910:CDS | 25.0% |
| ! | GAAGTTAAACAATGATTGTT+AGG | - | chr6_4:19570603-19570622 | None:intergenic | 25.0% |
| ! | GATGAGTATTCAAAATTTCA+TGG | + | chr6_4:19570657-19570676 | Msa0980910:CDS | 25.0% |
| !!! | TTATTTTGAATGAAGGATCT+TGG | + | chr6_4:19570784-19570803 | Msa0980910:intron | 25.0% |
| !!! | TGTTAGAGACAGTTTTAAAA+AGG | - | chr6_4:19571144-19571163 | None:intergenic | 25.0% |
| ! | ATACACTCGAAAAATGTTTA+TGG | - | chr6_4:19571234-19571253 | None:intergenic | 25.0% |
| ! | TTCAAAGATATGTGTATGTT+TGG | + | chr6_4:19571270-19571289 | Msa0980910:intron | 25.0% |
| ! | TAGAAGCTTCAATAAAATCA+CGG | - | chr6_4:19571329-19571348 | None:intergenic | 25.0% |
| ! | CAAAAATATTACTAATGGGA+GGG | - | chr6_4:19571436-19571455 | None:intergenic | 25.0% |
| ! | TCAAAAATATTACTAATGGG+AGG | - | chr6_4:19571437-19571456 | None:intergenic | 25.0% |
| ! | ATAATGTTATCAAACGTTTC+AGG | + | chr6_4:19571470-19571489 | Msa0980910:intron | 25.0% |
| ! | TAATGTTATCAAACGTTTCA+GGG | + | chr6_4:19571471-19571490 | Msa0980910:intron | 25.0% |
| ! | CAATTAATAAATGAAAAGGG+TGG | + | chr6_4:19571522-19571541 | Msa0980910:CDS | 25.0% |
| !! | TCTCTTTTGAATACTTAAGT+AGG | - | chr6_4:19571614-19571633 | None:intergenic | 25.0% |
| ! | TTAGTACTTGTTTGATATCA+TGG | - | chr6_4:19572086-19572105 | None:intergenic | 25.0% |
| ! | TTGTATTTCGTTAGTAAGTT+TGG | - | chr6_4:19572199-19572218 | None:intergenic | 25.0% |
| ! | GATTAAAGCCAAATTTATAG+TGG | + | chr6_4:19572387-19572406 | Msa0980910:CDS | 25.0% |
| !!! | TTGCAGATTTTGAAAAAGAA+AGG | + | chr6_4:19572529-19572548 | Msa0980910:intron | 25.0% |
| !!! | TGCAGATTTTGAAAAAGAAA+GGG | + | chr6_4:19572530-19572549 | Msa0980910:intron | 25.0% |
| !!! | AGGGAATTGCATTTTTTTTA+GGG | - | chr6_4:19572680-19572699 | None:intergenic | 25.0% |
| !!! | AAGGGAATTGCATTTTTTTT+AGG | - | chr6_4:19572681-19572700 | None:intergenic | 25.0% |
| ! | TTCAGATTTATTAATTGACG+TGG | + | chr6_4:19572813-19572832 | Msa0980910:intron | 25.0% |
| !! | TGTAATTTTCAGAACATACA+AGG | + | chr6_4:19573091-19573110 | Msa0980910:intron | 25.0% |
| ! | CATTTACATCCCTAAATTAT+AGG | + | chr6_4:19573330-19573349 | Msa0980910:three_prime_UTR | 25.0% |
| !!! | TGATTTTTTCGCTTTTAATG+TGG | + | chr6_4:19573396-19573415 | Msa0980910:three_prime_UTR | 25.0% |
| AGTAAGAGATATTCAAGATG+TGG | - | chr6_4:19569392-19569411 | None:intergenic | 30.0% | |
| TACCAATAGGAACTTTAAGT+TGG | + | chr6_4:19569466-19569485 | Msa0980910:CDS | 30.0% | |
| GATTCCATTCAGAGAAATTA+AGG | + | chr6_4:19569535-19569554 | Msa0980910:CDS | 30.0% | |
| CTTACCTTAATTTCTCTGAA+TGG | - | chr6_4:19569542-19569561 | None:intergenic | 30.0% | |
| ! | CACGACCATATTTTATTGTA+TGG | + | chr6_4:19569819-19569838 | Msa0980910:intron | 30.0% |
| ATTCAACATGATAACTCTAG+AGG | + | chr6_4:19569974-19569993 | Msa0980910:CDS | 30.0% | |
| GAATATAAATAACCTCAGGA+TGG | - | chr6_4:19570024-19570043 | None:intergenic | 30.0% | |
| CAGTAGCAAATTTACCATAT+GGG | + | chr6_4:19570302-19570321 | Msa0980910:CDS | 30.0% | |
| AGTAGCAAATTTACCATATG+GGG | + | chr6_4:19570303-19570322 | Msa0980910:CDS | 30.0% | |
| TCATTATTTGTACTAACCTG+TGG | - | chr6_4:19570469-19570488 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGAATGCAGACAA+TGG | + | chr6_4:19570623-19570642 | Msa0980910:intron | 30.0% |
| GACTGTTATTACGATAACAT+CGG | - | chr6_4:19571079-19571098 | None:intergenic | 30.0% | |
| ATGTTTATGGCTATGTTATG+CGG | - | chr6_4:19571221-19571240 | None:intergenic | 30.0% | |
| GGAGCTATAAAGAATAGTAA+TGG | + | chr6_4:19571573-19571592 | Msa0980910:CDS | 30.0% | |
| TTTGAATACTTAAGTAGGCT+TGG | - | chr6_4:19571609-19571628 | None:intergenic | 30.0% | |
| AAGTATTCAAAAGAGAACAG+AGG | + | chr6_4:19571618-19571637 | Msa0980910:CDS | 30.0% | |
| AAAGAGAACAGAGGAATTAA+AGG | + | chr6_4:19571627-19571646 | Msa0980910:CDS | 30.0% | |
| AGAGGAATTAAAGGATTTCA+TGG | + | chr6_4:19571636-19571655 | Msa0980910:CDS | 30.0% | |
| ! | AATTGATCCCAAGTCAATTT+TGG | + | chr6_4:19571668-19571687 | Msa0980910:CDS | 30.0% |
| ! | TCTTCAACCAAAATTGACTT+GGG | - | chr6_4:19571678-19571697 | None:intergenic | 30.0% |
| ATCTTCAACCAAAATTGACT+TGG | - | chr6_4:19571679-19571698 | None:intergenic | 30.0% | |
| GCTAAAATTTAATCCAAACC+AGG | - | chr6_4:19571761-19571780 | None:intergenic | 30.0% | |
| CAAAATTGTGTGTATGTGTA+AGG | + | chr6_4:19571898-19571917 | Msa0980910:intron | 30.0% | |
| ATACATGTTTGATATCACGA+TGG | + | chr6_4:19572016-19572035 | Msa0980910:intron | 30.0% | |
| !! | ATAATCATTTTAGTCGTGTC+TGG | - | chr6_4:19572232-19572251 | None:intergenic | 30.0% |
| ACTAGAGTAACAATTAGCAA+AGG | - | chr6_4:19572291-19572310 | None:intergenic | 30.0% | |
| TTTAGACTTATGTGCATTCA+AGG | - | chr6_4:19572315-19572334 | None:intergenic | 30.0% | |
| ! | TTTGTTCTCAACTTTTGGTA+TGG | + | chr6_4:19572343-19572362 | Msa0980910:intron | 30.0% |
| !! | GCAGATTTTGAAAAAGAAAG+GGG | + | chr6_4:19572531-19572550 | Msa0980910:intron | 30.0% |
| AATTTGCATATATGTCTGGA+AGG | - | chr6_4:19572564-19572583 | None:intergenic | 30.0% | |
| AAATGATCAAAATGGTTACC+TGG | - | chr6_4:19572621-19572640 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTTTAGGGTACAA+GGG | - | chr6_4:19572672-19572691 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTTTAGGGTACA+AGG | - | chr6_4:19572673-19572692 | None:intergenic | 30.0% |
| ATTCATGTGGAATGAAGAAA+AGG | + | chr6_4:19573114-19573133 | Msa0980910:CDS | 30.0% | |
| TTAAAGACATACATGACCAA+AGG | + | chr6_4:19573148-19573167 | Msa0980910:CDS | 30.0% | |
| !! | TTTCACATCTTTGAAACCTT+TGG | - | chr6_4:19573167-19573186 | None:intergenic | 30.0% |
| !! | CATAAGTAACTTGTTCTTCA+AGG | + | chr6_4:19573486-19573505 | Msa0980910:three_prime_UTR | 30.0% |
| CAATAAAATATGGTCGTGTC+TGG | - | chr6_4:19569817-19569836 | None:intergenic | 35.0% | |
| CCAAAGTTCCATCATCTTTA+GGG | - | chr6_4:19569934-19569953 | None:intergenic | 35.0% | |
| TTTATTGGATTAAACCCACC+TGG | + | chr6_4:19570090-19570109 | Msa0980910:intron | 35.0% | |
| TTATTGGATTAAACCCACCT+GGG | + | chr6_4:19570091-19570110 | Msa0980910:intron | 35.0% | |
| CATTAGCACAACTAATGACA+TGG | + | chr6_4:19570272-19570291 | Msa0980910:CDS | 35.0% | |
| GCAGTAGCAAATTTACCATA+TGG | + | chr6_4:19570301-19570320 | Msa0980910:CDS | 35.0% | |
| GTAGCAAATTTACCATATGG+GGG | + | chr6_4:19570304-19570323 | Msa0980910:CDS | 35.0% | |
| ! | TGAGTGTTTCTGAGTTAGAA+AGG | + | chr6_4:19570362-19570381 | Msa0980910:CDS | 35.0% |
| ! | TTTTGAATGAAGGATCTTGG+TGG | + | chr6_4:19570787-19570806 | Msa0980910:intron | 35.0% |
| GAGGCTTTGCTTAATGAATA+TGG | + | chr6_4:19570859-19570878 | Msa0980910:CDS | 35.0% | |
| ! | GAATATGGAAAGAGTGTATC+TGG | + | chr6_4:19570874-19570893 | Msa0980910:CDS | 35.0% |
| !!! | TCTGACTAGGTTTTAAATCG+CGG | + | chr6_4:19571002-19571021 | Msa0980910:intron | 35.0% |
| AGCACTTTCCAAAATCATTG+TGG | + | chr6_4:19571353-19571372 | Msa0980910:intron | 35.0% | |
| GCACTTTCCAAAATCATTGT+GGG | + | chr6_4:19571354-19571373 | Msa0980910:intron | 35.0% | |
| ! | ATAGTGTCCCACAATGATTT+TGG | - | chr6_4:19571364-19571383 | None:intergenic | 35.0% |
| ! | TATCAAACGTTTCAGGGTTT+TGG | + | chr6_4:19571477-19571496 | Msa0980910:intron | 35.0% |
| !!! | TTTCAGGGTTTTGGAAATGT+GGG | + | chr6_4:19571486-19571505 | Msa0980910:intron | 35.0% |
| GGAATTAAAGGATTTCATGG+TGG | + | chr6_4:19571639-19571658 | Msa0980910:CDS | 35.0% | |
| AATTGTGTGTATGTGTAAGG+TGG | + | chr6_4:19571901-19571920 | Msa0980910:intron | 35.0% | |
| ATGCATGTTTGATATCACGA+TGG | + | chr6_4:19571969-19571988 | Msa0980910:intron | 35.0% | |
| TGTTTGATATCACGATGGAT+TGG | + | chr6_4:19571974-19571993 | Msa0980910:intron | 35.0% | |
| ! | TCAACTTTTGGTATGGATGA+AGG | + | chr6_4:19572350-19572369 | Msa0980910:intron | 35.0% |
| ! | CAACTTTTGGTATGGATGAA+GGG | + | chr6_4:19572351-19572370 | Msa0980910:intron | 35.0% |
| CCTGAATTTGCATATATGTC+TGG | - | chr6_4:19572568-19572587 | None:intergenic | 35.0% | |
| CCAGACATATATGCAAATTC+AGG | + | chr6_4:19572565-19572584 | Msa0980910:CDS | 35.0% | |
| GACATATATGCAAATTCAGG+AGG | + | chr6_4:19572568-19572587 | Msa0980910:CDS | 35.0% | |
| ! | TTACAGTTAGCTACTTTGAG+TGG | + | chr6_4:19572593-19572612 | Msa0980910:CDS | 35.0% |
| ! | TACAGTTAGCTACTTTGAGT+GGG | + | chr6_4:19572594-19572613 | Msa0980910:CDS | 35.0% |
| AAACCTTCCTTGATGTACAA+GGG | - | chr6_4:19572699-19572718 | None:intergenic | 35.0% | |
| TAAACCTTCCTTGATGTACA+AGG | - | chr6_4:19572700-19572719 | None:intergenic | 35.0% | |
| AGAACATACAAGGATTCATG+TGG | + | chr6_4:19573101-19573120 | Msa0980910:intron | 35.0% | |
| ACATAATTGCGATCTTCGTA+TGG | + | chr6_4:19573201-19573220 | Msa0980910:CDS | 35.0% | |
| CATAATTGCGATCTTCGTAT+GGG | + | chr6_4:19573202-19573221 | Msa0980910:CDS | 35.0% | |
| TAGGGATGTAAATGCAAGAA+TGG | - | chr6_4:19573324-19573343 | None:intergenic | 35.0% | |
| TGCTAGTGCATTCATTGGTA+AGG | - | chr6_4:19569444-19569463 | None:intergenic | 40.0% | |
| GGCCAACTTAAAGTTCCTAT+TGG | - | chr6_4:19569471-19569490 | None:intergenic | 40.0% | |
| TGTAGCATCCCTAAAGATGA+TGG | + | chr6_4:19569923-19569942 | Msa0980910:CDS | 40.0% | |
| !! | CCCTAAAGATGATGGAACTT+TGG | + | chr6_4:19569931-19569950 | Msa0980910:CDS | 40.0% |
| GCCAAAGTTCCATCATCTTT+AGG | - | chr6_4:19569935-19569954 | None:intergenic | 40.0% | |
| GGAACTTTGGCTACATATGT+TGG | + | chr6_4:19569944-19569963 | Msa0980910:CDS | 40.0% | |
| TGGCTACATATGTTGGATTC+AGG | + | chr6_4:19569951-19569970 | Msa0980910:CDS | 40.0% | |
| ATCTGATCCCTCCTTTCATT+GGG | - | chr6_4:19570000-19570019 | None:intergenic | 40.0% | |
| TATCTGATCCCTCCTTTCAT+TGG | - | chr6_4:19570001-19570020 | None:intergenic | 40.0% | |
| GCTAATGCATTCACTTCATC+TGG | - | chr6_4:19570259-19570278 | None:intergenic | 40.0% | |
| CAGAAACACTCAACTCTGAA+GGG | - | chr6_4:19570354-19570373 | None:intergenic | 40.0% | |
| TCAGAAACACTCAACTCTGA+AGG | - | chr6_4:19570355-19570374 | None:intergenic | 40.0% | |
| TTTGAATGCAGACAATGGCA+TGG | + | chr6_4:19570628-19570647 | Msa0980910:intron | 40.0% | |
| ! | GAAAGAGTGTATCTGGTCAA+CGG | + | chr6_4:19570881-19570900 | Msa0980910:CDS | 40.0% |
| !! | TGGTCAACGGTTTGTTATAC+AGG | + | chr6_4:19570894-19570913 | Msa0980910:CDS | 40.0% |
| CGTTCAAGGTTGCAATATCA+AGG | - | chr6_4:19571111-19571130 | None:intergenic | 40.0% | |
| TGATATTGCAACCTTGAACG+CGG | + | chr6_4:19571111-19571130 | Msa0980910:intron | 40.0% | |
| ACTAATGGGAGGGTAATGTT+TGG | - | chr6_4:19571426-19571445 | None:intergenic | 40.0% | |
| !!! | GTTTCAGGGTTTTGGAAATG+TGG | + | chr6_4:19571485-19571504 | Msa0980910:intron | 40.0% |
| !!! | TTCAGGGTTTTGGAAATGTG+GGG | + | chr6_4:19571487-19571506 | Msa0980910:intron | 40.0% |
| !! | TTTTGGAAATGTGGGGTCAT+GGG | + | chr6_4:19571494-19571513 | Msa0980910:CDS | 40.0% |
| GTTGCTGTGAGTGATATAAC+AGG | + | chr6_4:19571552-19571571 | Msa0980910:CDS | 40.0% | |
| TAGGTACTTTCACATAAGCC+TGG | + | chr6_4:19571740-19571759 | Msa0980910:intron | 40.0% | |
| ACTTTCACATAAGCCTGGTT+TGG | + | chr6_4:19571745-19571764 | Msa0980910:intron | 40.0% | |
| !! | CGATGGATTGGAAGAAATCA+CGG | + | chr6_4:19572033-19572052 | Msa0980910:intron | 40.0% |
| GGCTGCTTCCACTATAAATT+TGG | - | chr6_4:19572398-19572417 | None:intergenic | 40.0% | |
| AACTAACCTCATCAGCATCT+GGG | - | chr6_4:19572435-19572454 | None:intergenic | 40.0% | |
| AAACTAACCTCATCAGCATC+TGG | - | chr6_4:19572436-19572455 | None:intergenic | 40.0% | |
| TGCAATTCCCTTGTACATCA+AGG | + | chr6_4:19572689-19572708 | Msa0980910:intron | 40.0% | |
| ATTCCCTTGTACATCAAGGA+AGG | + | chr6_4:19572693-19572712 | Msa0980910:intron | 40.0% | |
| ACGGTTAACTGCAAGTGTAA+AGG | - | chr6_4:19573230-19573249 | None:intergenic | 40.0% | |
| TTTAAGCTTCCCAACCTCTA+AGG | - | chr6_4:19573270-19573289 | None:intergenic | 40.0% | |
| GTAGCTGCTAGTGCATTCAT+TGG | - | chr6_4:19569449-19569468 | None:intergenic | 45.0% | |
| ATGCACTAGCAGCTACCAAT+AGG | + | chr6_4:19569453-19569472 | Msa0980910:CDS | 45.0% | |
| !! | GGAACTTTAAGTTGGCCTCT+AGG | + | chr6_4:19569474-19569493 | Msa0980910:CDS | 45.0% |
| !! | TAAGTTGGCCTCTAGGCTTT+TGG | + | chr6_4:19569481-19569500 | Msa0980910:CDS | 45.0% |
| !! | AAGTTGGCCTCTAGGCTTTT+GGG | + | chr6_4:19569482-19569501 | Msa0980910:CDS | 45.0% |
| ATCCAATCCCAAAAGCCTAG+AGG | - | chr6_4:19569492-19569511 | None:intergenic | 45.0% | |
| ! | AACTCTAGAGGCCCAATGAA+AGG | + | chr6_4:19569986-19570005 | Msa0980910:CDS | 45.0% |
| !! | TTGGTTTGGTGGTGTTGGTT+TGG | + | chr6_4:19570114-19570133 | Msa0980910:intron | 45.0% |
| !! | TGGTTTGGTGGTGTTGGTTT+GGG | + | chr6_4:19570115-19570134 | Msa0980910:intron | 45.0% |
| TTGGAGTATGTTCCTGCTCA+AGG | + | chr6_4:19570141-19570160 | Msa0980910:intron | 45.0% | |
| ! | ATTCTCCCCGGTGCTAATTT+GGG | + | chr6_4:19570175-19570194 | Msa0980910:intron | 45.0% |
| TATCCCACCCAAATTAGCAC+CGG | - | chr6_4:19570185-19570204 | None:intergenic | 45.0% | |
| TGATGTTCCTGCACCTGATA+TGG | + | chr6_4:19570435-19570454 | Msa0980910:CDS | 45.0% | |
| GATGTTCCTGCACCTGATAT+GGG | + | chr6_4:19570436-19570455 | Msa0980910:CDS | 45.0% | |
| TGTAGCACAGACACTTCTGA+TGG | + | chr6_4:19570538-19570557 | Msa0980910:intron | 45.0% | |
| ! | CTTCTGATGGAAGGTGTGTT+AGG | + | chr6_4:19570551-19570570 | Msa0980910:intron | 45.0% |
| ! | AAGGATCTTGGTGGATCTCT+AGG | + | chr6_4:19570796-19570815 | Msa0980910:intron | 45.0% |
| ! | TTGGACTAGAGACTCTGACT+AGG | + | chr6_4:19570989-19571008 | Msa0980910:intron | 45.0% |
| !!! | GTTTTGGAAATGTGGGGTCA+TGG | + | chr6_4:19571493-19571512 | Msa0980910:CDS | 45.0% |
| !! | CTCTTGGTGGTGTCATCAAT+AGG | + | chr6_4:19571721-19571740 | Msa0980910:CDS | 45.0% |
| ! | TGGATTGGAAGAAATCACGG+TGG | + | chr6_4:19572036-19572055 | Msa0980910:intron | 45.0% |
| TTGCAGTTAACCGTGTAGCA+AGG | + | chr6_4:19573236-19573255 | Msa0980910:CDS | 45.0% | |
| TGCAGTTAACCGTGTAGCAA+GGG | + | chr6_4:19573237-19573256 | Msa0980910:CDS | 45.0% | |
| TCTAGAGGCCCAATGAAAGG+AGG | + | chr6_4:19569989-19570008 | Msa0980910:CDS | 50.0% | |
| CTAGAGGCCCAATGAAAGGA+GGG | + | chr6_4:19569990-19570009 | Msa0980910:CDS | 50.0% | |
| AGGGATCAGATACCATCCTG+AGG | + | chr6_4:19570009-19570028 | Msa0980910:CDS | 50.0% | |
| TGGATTAAACCCACCTGGGT+TGG | + | chr6_4:19570095-19570114 | Msa0980910:intron | 50.0% | |
| !! | TAAACCCACCTGGGTTGGTT+TGG | + | chr6_4:19570100-19570119 | Msa0980910:intron | 50.0% |
| !! | GTGGTGTTGGTTTGGGATCT+TGG | + | chr6_4:19570122-19570141 | Msa0980910:intron | 50.0% |
| TCGAACTTGAGACCTTGAGC+AGG | - | chr6_4:19570156-19570175 | None:intergenic | 50.0% | |
| GTCTCAAGTTCGATTCTCCC+CGG | + | chr6_4:19570163-19570182 | Msa0980910:intron | 50.0% | |
| ! | GATTCTCCCCGGTGCTAATT+TGG | + | chr6_4:19570174-19570193 | Msa0980910:intron | 50.0% |
| ATCCCACCCAAATTAGCACC+GGG | - | chr6_4:19570184-19570203 | None:intergenic | 50.0% | |
| !! | TTACCATATGGGGGTGCCAA+AGG | + | chr6_4:19570313-19570332 | Msa0980910:CDS | 50.0% |
| GTCAACCCCTATACCTCCTT+TGG | - | chr6_4:19570332-19570351 | None:intergenic | 50.0% | |
| TGTGGTCCTGTTCCCATATC+AGG | - | chr6_4:19570451-19570470 | None:intergenic | 50.0% | |
| TGATATGGGAACAGGACCAC+AGG | + | chr6_4:19570450-19570469 | Msa0980910:CDS | 50.0% | |
| GCACAGACACTTCTGATGGA+AGG | + | chr6_4:19570542-19570561 | Msa0980910:intron | 50.0% | |
| ! | GGTTTTCCTGTCACTACTGC+AGG | - | chr6_4:19570690-19570709 | None:intergenic | 50.0% |
| CTAGGAAGAGATGCAGCTAC+AGG | + | chr6_4:19570814-19570833 | Msa0980910:CDS | 50.0% | |
| AGAGATGCAGCTACAGGAAG+AGG | + | chr6_4:19570820-19570839 | Msa0980910:CDS | 50.0% | |
| AGGTGTCCTCTTTGCAACTG+AGG | + | chr6_4:19570840-19570859 | Msa0980910:CDS | 50.0% | |
| GCAAAGCCTCAGTTGCAAAG+AGG | - | chr6_4:19570849-19570868 | None:intergenic | 50.0% | |
| GTTCTTATCCCTGCTGCTCT+TGG | + | chr6_4:19571705-19571724 | Msa0980910:CDS | 50.0% | |
| ATCTGGGTCAGTTGGGTGAT+TGG | - | chr6_4:19572419-19572438 | None:intergenic | 50.0% | |
| CATCAGCATCTGGGTCAGTT+GGG | - | chr6_4:19572426-19572445 | None:intergenic | 50.0% | |
| TCATCAGCATCTGGGTCAGT+TGG | - | chr6_4:19572427-19572446 | None:intergenic | 50.0% | |
| AACTGACCCAGATGCTGATG+AGG | + | chr6_4:19572426-19572445 | Msa0980910:CDS | 50.0% | |
| ! | TAGCTACTTTGAGTGGGTCC+AGG | + | chr6_4:19572600-19572619 | Msa0980910:CDS | 50.0% |
| ! | TTCCCAACCTCTAAGGACAG+TGG | - | chr6_4:19573263-19573282 | None:intergenic | 50.0% |
| !!! | GGCCTCTAGGCTTTTGGGAT+TGG | + | chr6_4:19569487-19569506 | Msa0980910:CDS | 55.0% |
| ACCACCAAACCAACCCAGGT+GGG | - | chr6_4:19570107-19570126 | None:intergenic | 55.0% | |
| CAACACCACCAAACCAACCC+AGG | - | chr6_4:19570111-19570130 | None:intergenic | 55.0% | |
| !! | CTGGGTTGGTTTGGTGGTGT+TGG | + | chr6_4:19570109-19570128 | Msa0980910:intron | 55.0% |
| ! | TCCCCGGTGCTAATTTGGGT+GGG | + | chr6_4:19570179-19570198 | Msa0980910:intron | 55.0% |
| TCCCACCCAAATTAGCACCG+GGG | - | chr6_4:19570183-19570202 | None:intergenic | 55.0% | |
| ! | GGGGTGCCAAAGGAGGTATA+GGG | + | chr6_4:19570323-19570342 | Msa0980910:CDS | 55.0% |
| ! | GGGTGCCAAAGGAGGTATAG+GGG | + | chr6_4:19570324-19570343 | Msa0980910:CDS | 55.0% |
| CCTGTTCCCATATCAGGTGC+AGG | - | chr6_4:19570445-19570464 | None:intergenic | 55.0% | |
| CCTGCACCTGATATGGGAAC+AGG | + | chr6_4:19570442-19570461 | Msa0980910:CDS | 55.0% | |
| CTGTCACTACTGCAGGAGAG+TGG | - | chr6_4:19570683-19570702 | None:intergenic | 55.0% | |
| CACTCTCCTGCAGTAGTGAC+AGG | + | chr6_4:19570681-19570700 | Msa0980910:CDS | 55.0% | |
| CTTATCCCTGCTGCTCTTGG+TGG | + | chr6_4:19571708-19571727 | Msa0980910:CDS | 55.0% | |
| TGACACCACCAAGAGCAGCA+GGG | - | chr6_4:19571716-19571735 | None:intergenic | 55.0% | |
| ATGACACCACCAAGAGCAGC+AGG | - | chr6_4:19571717-19571736 | None:intergenic | 55.0% | |
| GGCCACTGTCCTTAGAGGTT+GGG | + | chr6_4:19573258-19573277 | Msa0980910:CDS | 55.0% | |
| !! | ACCCACCTGGGTTGGTTTGG+TGG | + | chr6_4:19570103-19570122 | Msa0980910:intron | 60.0% |
| CACCACCAAACCAACCCAGG+TGG | - | chr6_4:19570108-19570127 | None:intergenic | 60.0% | |
| ! | CTCCCCGGTGCTAATTTGGG+TGG | + | chr6_4:19570178-19570197 | Msa0980910:intron | 60.0% |
| CCTCCTTTGGCACCCCCATA+TGG | - | chr6_4:19570319-19570338 | None:intergenic | 60.0% | |
| !! | CCATATGGGGGTGCCAAAGG+AGG | + | chr6_4:19570316-19570335 | Msa0980910:CDS | 60.0% |
| !! | GGGGGTGCCAAAGGAGGTAT+AGG | + | chr6_4:19570322-19570341 | Msa0980910:CDS | 60.0% |
| TGCAACCTTGAACGCGGTCG+TGG | + | chr6_4:19571117-19571136 | Msa0980910:intron | 60.0% | |
| AAGGTCCACGACCGCGTTCA+AGG | - | chr6_4:19571125-19571144 | None:intergenic | 60.0% | |
| GGACAGTGGCCCTTGCTACA+CGG | - | chr6_4:19573249-19573268 | None:intergenic | 60.0% | |
| GCAAGGGCCACTGTCCTTAG+AGG | + | chr6_4:19573253-19573272 | Msa0980910:CDS | 60.0% | |
| GGGCCACTGTCCTTAGAGGT+TGG | + | chr6_4:19573257-19573276 | Msa0980910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 19569308 | 19573529 | 19569308 | ID=Msa0980910;Name=Msa0980910 |
| chr6_4 | mRNA | 19569308 | 19573529 | 19569308 | ID=Msa0980910-mRNA-1;Parent=Msa0980910;Name=Msa0980910-mRNA-1;_AED=0.13;_eAED=0.13;_QI=141|1|1|1|1|1|9|241|411 |
| chr6_4 | exon | 19569308 | 19569556 | 19569308 | ID=Msa0980910-mRNA-1:exon:6083;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19569917 | 19570030 | 19569917 | ID=Msa0980910-mRNA-1:exon:6084;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19570250 | 19570471 | 19570250 | ID=Msa0980910-mRNA-1:exon:6085;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19570639 | 19570713 | 19570639 | ID=Msa0980910-mRNA-1:exon:6086;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19570799 | 19570915 | 19570799 | ID=Msa0980910-mRNA-1:exon:6087;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19571492 | 19571742 | 19571492 | ID=Msa0980910-mRNA-1:exon:6088;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19572372 | 19572447 | 19572372 | ID=Msa0980910-mRNA-1:exon:6089;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19572535 | 19572621 | 19572535 | ID=Msa0980910-mRNA-1:exon:6090;Parent=Msa0980910-mRNA-1 |
| chr6_4 | exon | 19573103 | 19573529 | 19573103 | ID=Msa0980910-mRNA-1:exon:6091;Parent=Msa0980910-mRNA-1 |
| chr6_4 | five_prime_UTR | 19569308 | 19569448 | 19569308 | ID=Msa0980910-mRNA-1:five_prime_utr;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19569449 | 19569556 | 19569449 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19569917 | 19570030 | 19569917 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19570250 | 19570471 | 19570250 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19570639 | 19570713 | 19570639 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19570799 | 19570915 | 19570799 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19571492 | 19571742 | 19571492 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19572372 | 19572447 | 19572372 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19572535 | 19572621 | 19572535 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | CDS | 19573103 | 19573288 | 19573103 | ID=Msa0980910-mRNA-1:cds;Parent=Msa0980910-mRNA-1 |
| chr6_4 | three_prime_UTR | 19573289 | 19573529 | 19573289 | ID=Msa0980910-mRNA-1:three_prime_utr;Parent=Msa0980910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
