AlfalfaGEDB | Msa1122790

M. sativa cultivar zhongmu-4 / Msa1122790

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122790	XP_013449896.1	94.604	278	13	1	1	276	1	278	0.0	530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122790	sp\|Q9LTC4\|MYB15_ARATH	49.488	293	118	8	1	274	1	282	3.67e-84	256

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122790	A0A072U2K6	94.604	278	13	1	1	276	1	278	0.0	530

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TFs/TRs:

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Gene ID	Type	Classification
Msa1122790	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0888980	Msa1122790	0.816147	6.424175e-52	-8.615850e-47
Msa0944620	Msa1122790	0.828889	6.994186e-55	-8.615850e-47
Msa0980910	Msa1122790	0.812853	3.440618e-51	-8.615850e-47
Msa1024690	Msa1122790	0.806308	8.760900e-50	-8.615850e-47
Msa1063370	Msa1122790	0.809417	1.912274e-50	-8.615850e-47
Msa1077060	Msa1122790	0.980266	7.970482e-150	-8.615850e-47
Msa1108720	Msa1122790	0.826784	2.242678e-54	-8.615850e-47
Msa1122790	Msa1152410	0.823881	1.090898e-53	-8.615850e-47
Msa1122790	Msa1163880	0.866738	2.289441e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122790	MtrunA17_Chr7g0261281	94.604	278	13	1	1	276	1	278	0.0	530
Msa1122790	MtrunA17_Chr1g0167661	47.038	287	108	9	1	276	1	254	4.17e-78	237
Msa1122790	MtrunA17_Chr1g0187761	46.209	277	129	4	1	276	1	258	6.77e-76	231
Msa1122790	MtrunA17_Chr1g0167691	47.163	282	116	5	1	276	1	255	1.06e-75	231
Msa1122790	MtrunA17_Chr7g0274581	74.167	120	31	0	1	120	1	120	8.18e-71	217
Msa1122790	MtrunA17_Chr4g0039971	76.271	118	28	0	1	118	2	119	1.19e-64	206
Msa1122790	MtrunA17_Chr2g0323411	75.000	116	29	0	1	116	1	116	1.96e-62	199
Msa1122790	MtrunA17_Chr8g0349261	54.040	198	67	7	1	183	1	189	2.66e-62	198
Msa1122790	MtrunA17_Chr8g0346561	63.158	133	49	0	1	133	1	133	7.35e-62	197
Msa1122790	MtrunA17_Chr1g0203411	69.672	122	37	0	1	122	1	122	2.71e-61	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122790	AT3G23250.1	49.488	293	118	8	1	274	1	282	3.73e-85	256
Msa1122790	AT2G31180.1	48.214	280	110	5	1	276	1	249	5.83e-82	247
Msa1122790	AT1G06180.1	51.711	263	91	8	1	262	1	228	1.66e-77	236
Msa1122790	AT3G02940.2	74.576	118	30	0	1	118	1	118	3.26e-64	204
Msa1122790	AT3G02940.1	74.576	118	30	0	1	118	1	118	8.27e-64	203
Msa1122790	AT3G02940.3	74.576	118	30	0	1	118	1	118	8.27e-64	203
Msa1122790	AT5G16770.4	45.418	251	121	6	1	239	1	247	1.38e-63	202
Msa1122790	AT5G16770.3	45.418	251	121	6	1	239	1	247	1.38e-63	202
Msa1122790	AT5G16770.1	45.418	251	121	6	1	239	1	247	2.41e-63	202
Msa1122790	AT5G16770.2	45.418	251	121	6	1	239	1	247	2.41e-63	202

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Find 59 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCAACTTGATCAAA+AGG	0.437301	7_3:+73291563	None:intergenic
AAAATTGTACCAGCTTGTTT+GGG	0.417453	7_3:+73291339	None:intergenic
AAAGAGTTGCAGATTGCGAT+GGG	0.587500	7_3:-73291173	Msa1122790:CDS
AACAAAATCATGAAGATGAT+AGG	0.428670	7_3:-73289955	Msa1122790:CDS
AAGTGTTTATGTGATTGATG+AGG	0.675801	7_3:+73291388	None:intergenic
AAGTTACCCCGCTTGATATC+CGG	0.423140	7_3:+73291136	None:intergenic
AATCAATTTGCATCAAATGT+TGG	0.410701	7_3:-73291089	Msa1122790:CDS
AATTCTAGCATTGAGACAAA+TGG	0.516171	7_3:-73289761	Msa1122790:CDS
ACAAATGGTGTTATGGACAT+TGG	0.642021	7_3:-73289746	Msa1122790:CDS
ACACTTATGGTCATTCCAAT+TGG	0.447001	7_3:-73291371	Msa1122790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCCAACTTGATCAAA+AGG	+	chr7_3:73289454-73289473	None:intergenic	30.0%
AAGTGTTTATGTGATTGATG+AGG	+	chr7_3:73289629-73289648	None:intergenic	30.0%
ATCCCAATATCACATGAATT+TGG	+	chr7_3:73290034-73290053	None:intergenic	30.0%
GACAAATCAGAACAATTGTT+AGG	-	chr7_3:73290090-73290109	Msa1122790:CDS	30.0%
CGAAAAATATCATACTTTCG+TGG	-	chr7_3:73290645-73290664	Msa1122790:intron	30.0%
TATCAATTTCAAGCTCCATT+AGG	-	chr7_3:73291301-73291320	Msa1122790:intron	30.0%
ATTGAGTTTATGCCAAGATA+TGG	-	chr7_3:73291354-73291373	Msa1122790:CDS	30.0%
ATACAAGTTCCATACAATCT+AGG	+	chr7_3:73291480-73291499	None:intergenic	30.0%
AAAATGCCAACTTGATCAAA+AGG	+	chr7_3:73289454-73289473	None:intergenic	30.0%
AAGTGTTTATGTGATTGATG+AGG	+	chr7_3:73289629-73289648	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	73289413	73291623	73289413	ID=Msa1122790;Name=Msa1122790
chr7_3	mRNA	73289413	73291623	73289413	ID=Msa1122790-mRNA-1;Parent=Msa1122790;Name=Msa1122790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=142\|1\|1\|1\|1\|1\|3\|188\|276
chr7_3	exon	73289413	73290168	73289413	ID=Msa1122790-mRNA-1:exon:19206;Parent=Msa1122790-mRNA-1
chr7_3	exon	73291082	73291211	73291082	ID=Msa1122790-mRNA-1:exon:19205;Parent=Msa1122790-mRNA-1
chr7_3	exon	73291349	73291623	73291349	ID=Msa1122790-mRNA-1:exon:19204;Parent=Msa1122790-mRNA-1
chr7_3	five_prime_UTR	73291482	73291623	73291482	ID=Msa1122790-mRNA-1:five_prime_utr;Parent=Msa1122790-mRNA-1
chr7_3	CDS	73291349	73291481	73291349	ID=Msa1122790-mRNA-1:cds;Parent=Msa1122790-mRNA-1
chr7_3	CDS	73291082	73291211	73291082	ID=Msa1122790-mRNA-1:cds;Parent=Msa1122790-mRNA-1
chr7_3	CDS	73289601	73290168	73289601	ID=Msa1122790-mRNA-1:cds;Parent=Msa1122790-mRNA-1
chr7_3	three_prime_UTR	73289413	73289600	73289413	ID=Msa1122790-mRNA-1:three_prime_utr;Parent=Msa1122790-mRNA-1

Gene Sequence

>Msa1122790

ATGGGAAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTACAGAAGAAGATCGAATCCTCATCAATCACATAAACACTTATGGTCATTCCAATTGGCGTGCTCTTCCCAAACAAGCTGGATTGCTAAGGTGTGGAAAGAGTTGCAGATTGCGATGGGCAAATTATCTGAAGCCGGATATCAAGCGGGGTAACTTCACCAAAGAAGAAGAGGACGCAATAATCAATTTGCATCAAATGTTGGGAAACAGATGGTCAACTATTGCAGCAAGGTTACCTGGACGAACAGATAACGAGATTAAAAATGTATGGCACACCCATTTGAAGAAAAGGCTGCCACAAAACCAACATGAACACAACAACAGTACAAAACGAAACAAAAAACAAACCAAGTTGGACTTTCATGTCGACGCCTCCAATTCAGACCAAGACACCAAACAGGAACAAAATCATGAAGATGATAGGCAACAGTGTTCTAGTGACGTGTCATCACATAATAATAGTAGCATTGCTACTTCAAATAATGATACAAGTTACAATAATATCAACAACAACAATAATAATGATGTTGTTGATTCGGCAGAAAATAATTTTGCATTGGATGATGATTTTTGGTGTGAAGTTTTGTCATCTGATAATTCTAGCATTGAGACAAATGGTGTTATGGACATTGGTGTTGATAATTATCAATTTCAAGCTCCATTAGGAAGAGAAGAAGGAGTTTTTGATTCTAGTTCATTGAGTTTATGCCAAGATATGGACTTCTGGCACGATGTTTATGCGAGAGCTGAGGAAATAACTGAGTTACTAGAATTATGA

Protein sequence

>Msa1122790

MGRAPCCEKMGLKKGPWTTEEDRILINHINTYGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQHEHNNSTKRNKKQTKLDFHVDASNSDQDTKQEQNHEDDRQQCSSDVSSHNNSSIATSNNDTSYNNINNNNNNDVVDSAENNFALDDDFWCEVLSSDNSSIETNGVMDIGVDNYQFQAPLGREEGVFDSSSLSLCQDMDFWHDVYARAEEITELLEL*