AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0982320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982320 MtrunA17_Chr4g0040281 87.500 56 7 0 1 56 1 56 3.17e-29 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982320 AT1G65032.1 61.905 84 32 0 3 86 2 85 8.43e-34 112

Find 83 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCTGAATTTACTTATTT+TGG 0.028911 6_4:+21998073 Msa0982320:five_prime_UTR
CCTAATTAGAAATATTATTT+AGG 0.103344 6_4:+22002735 Msa0982320:three_prime_UTR
CCTAAATAATATTTCTAATT+AGG 0.148563 6_4:-22002735 None:intergenic
TAAACATACTTTGTTGTAAT+AGG 0.181564 6_4:-22002871 None:intergenic
TCAAGTAATCATGTTCCTTA+TGG 0.243807 6_4:-22002708 None:intergenic
TAAATGAAAGTTTAACTTAA+GGG 0.280559 6_4:+22002577 Msa0982320:three_prime_UTR
AAACATACTTTGTTGTAATA+GGG 0.304958 6_4:-22002870 None:intergenic
GTTGTTTATATGTTAGAAAA+AGG 0.308022 6_4:+22002389 Msa0982320:three_prime_UTR
CTAATTAGAAATATTATTTA+GGG 0.315731 6_4:+22002736 Msa0982320:three_prime_UTR
AAGGCATACGGTATTCAAAA+TGG 0.318968 6_4:+22002408 Msa0982320:three_prime_UTR
CATACAATAAGGCAGAATTT+AGG 0.321676 6_4:-22002485 None:intergenic
TTTCCAAAATAAGTAAATTC+AGG 0.329150 6_4:-21998076 None:intergenic
CTGAGGTACGTGCAATGTTT+TGG 0.338129 6_4:+22002191 Msa0982320:CDS
AGTATTCAGCAGCATCAATT+AGG 0.357297 6_4:-22002252 None:intergenic
GTATGGAGGGCCGCCGGAGA+GGG 0.360405 6_4:-22001785 None:intergenic
GAATGGGAAAGGGTTTGATA+TGG 0.363159 6_4:+22002047 Msa0982320:intron
ATAAATGAAAGTTTAACTTA+AGG 0.365900 6_4:+22002576 Msa0982320:three_prime_UTR
TTCCTTATGGAATTCATCAT+AGG 0.374364 6_4:-22002695 None:intergenic
GGGCCGCCGGAGAGGGGTGG+CGG 0.376495 6_4:-22001778 None:intergenic
CTTATTATAAGCATACAATA+AGG 0.391094 6_4:-22002496 None:intergenic
AATGCAATCATGATATGTTT+TGG 0.392366 6_4:+22002367 Msa0982320:three_prime_UTR
TGCGTGGGCGTGGTGGTGTA+TGG 0.397065 6_4:-22001802 None:intergenic
TTGGTAGTACTTAATAATTA+AGG 0.410383 6_4:+22002620 Msa0982320:three_prime_UTR
CTAAACTGCAACGAGGGAAA+TGG 0.417008 6_4:-22002335 None:intergenic
TATGGAGGGCCGCCGGAGAG+GGG 0.417354 6_4:-22001784 None:intergenic
CGTAATTTCGAATTCTAACT+AGG 0.423492 6_4:-22002526 None:intergenic
AAACCTATTAAAATTAAGTA+AGG 0.424164 6_4:-22002807 None:intergenic
GGAGGGCCGCCGGAGAGGGG+TGG 0.424588 6_4:-22001781 None:intergenic
AACATACTCTACATTGGATT+CGG 0.431126 6_4:-22002459 None:intergenic
TTGTATGCAGTGGTCTCAAA+AGG 0.437390 6_4:+21997861 Msa0982320:intron
ACAGGTGAGCTGCGTGGGCG+TGG 0.465946 6_4:-22001812 None:intergenic
TGTATGGAGGGCCGCCGGAG+AGG 0.471811 6_4:-22001786 None:intergenic
CAGAGGATCTGCATAGGAAC+AGG 0.475737 6_4:+22002077 Msa0982320:CDS
ATACCTTTCACGACGACGAT+GGG 0.476049 6_4:-21996918 None:intergenic
CCTATCCGTCTTTCTGTCAC+CGG 0.477823 6_4:+21996892 Msa0982320:five_prime_UTR
CTTCGCTAGTCTTGCAGCGA+AGG 0.478795 6_4:-22002164 None:intergenic
TCACGACGACGATGGGAAAC+CGG 0.481558 6_4:-21996911 None:intergenic
GGAAATGGAAGGTGTTGATC+AGG 0.482869 6_4:-22002320 None:intergenic
GTGGGCGTGGTGGTGTATGG+AGG 0.493745 6_4:-22001799 None:intergenic
TTTCCCATCGTCGTCGTGAA+AGG 0.495653 6_4:+21996915 Msa0982320:five_prime_UTR
CCCACGCAGCTCACCTGTCC+AGG 0.497435 6_4:+22001817 Msa0982320:five_prime_UTR
TTATTGAAGAATTATACATC+AGG 0.499873 6_4:+22002652 Msa0982320:three_prime_UTR
ATCCTATGATGAATTCCATA+AGG 0.506150 6_4:+22002693 Msa0982320:three_prime_UTR
GGTGTGTTGCAGAATGGGAA+AGG 0.507863 6_4:+22002036 Msa0982320:intron
CCTGGACAGGTGAGCTGCGT+GGG 0.512098 6_4:-22001817 None:intergenic
AATGGGAAAGGGTTTGATAT+GGG 0.517534 6_4:+22002048 Msa0982320:exon
AATAACCACTTACAAAATCA+AGG 0.518220 6_4:+21998097 Msa0982320:five_prime_UTR
AGCTCGCCGCCACCCCTCTC+CGG 0.520861 6_4:+22001772 Msa0982320:five_prime_UTR
TTTGATATGGGTGACGGCAG+AGG 0.522966 6_4:+22002060 Msa0982320:CDS
TGGGCGTGGTGGTGTATGGA+GGG 0.524943 6_4:-22001798 None:intergenic
AGGCTTAACATACTCTACAT+TGG 0.529323 6_4:-22002465 None:intergenic
GTGTGTTGCAGAATGGGAAA+GGG 0.536633 6_4:+22002037 Msa0982320:intron
TTCATACTAAACTGCAACGA+GGG 0.542155 6_4:-22002341 None:intergenic
CATACCTTTCACGACGACGA+TGG 0.542964 6_4:-21996919 None:intergenic
TTATACATCAGGCTTGATGA+AGG 0.544425 6_4:+22002663 Msa0982320:three_prime_UTR
ACGGATAGGACGCGGCGGAG+CGG 0.567541 6_4:-21996878 None:intergenic
GGTGGTGTATGGAGGGCCGC+CGG 0.568050 6_4:-22001791 None:intergenic
AGAAAGAGACAAACCTGGAC+AGG 0.569740 6_4:-22001830 None:intergenic
TAGAATCAGATAACAAACCT+TGG 0.575230 6_4:+21997934 Msa0982320:five_prime_UTR
TGTATGCAGTGGTCTCAAAA+GGG 0.585741 6_4:+21997862 Msa0982320:intron
CCAAAATAAGTAAATTCAGG+AGG 0.595868 6_4:-21998073 None:intergenic
TTTGGGTGGGTTCTGATGAA+CGG 0.599950 6_4:+22002209 Msa0982320:CDS
GCGAAGGTCAGTGGCAACGA+AGG 0.601082 6_4:-22002148 None:intergenic
GGTGAGCTGCGTGGGCGTGG+TGG 0.601631 6_4:-22001809 None:intergenic
ACCTGGACAGGTGAGCTGCG+TGG 0.620852 6_4:-22001818 None:intergenic
TCGCCGCCACCCCTCTCCGG+CGG 0.621262 6_4:+22001775 Msa0982320:five_prime_UTR
CTACATTGGATTCGGCTCGT+AGG 0.624831 6_4:-22002451 None:intergenic
AGTCTTGCAGCGAAGGTCAG+TGG 0.626755 6_4:-22002157 None:intergenic
TATACATCAGGCTTGATGAA+GGG 0.629300 6_4:+22002664 Msa0982320:three_prime_UTR
AAAGGGTTTGATATGGGTGA+CGG 0.629972 6_4:+22002054 Msa0982320:CDS
GGAAACCGGTGACAGAAAGA+CGG 0.632528 6_4:-21996897 None:intergenic
CCGGTGACAGAAAGACGGAT+AGG 0.637583 6_4:-21996892 None:intergenic
GTGGCAACGAAGGAGAATTG+AGG 0.641838 6_4:-22002138 None:intergenic
TGACGGCAGAGGATCTGCAT+AGG 0.650784 6_4:+22002071 Msa0982320:CDS
ACAGAAAGACGGATAGGACG+CGG 0.653747 6_4:-21996886 None:intergenic
ATCTGATTCTAGCTGCAGAG+TGG 0.678035 6_4:-21997922 None:intergenic
GGGTGTAACAGACACAACAT+TGG 0.680236 6_4:+21997882 Msa0982320:five_prime_UTR
ACTGCAACGAGGGAAATGGA+AGG 0.683467 6_4:-22002331 None:intergenic
AAGACTAGCGAAGAAAGCTG+AGG 0.705121 6_4:+22002174 Msa0982320:CDS
GATCAGGTAATGTGACGAGG+AGG 0.706235 6_4:-22002304 None:intergenic
GTTGATCAGGTAATGTGACG+AGG 0.712528 6_4:-22002307 None:intergenic
GAAAGACGGATAGGACGCGG+CGG 0.725446 6_4:-21996883 None:intergenic
GTTCATACTAAACTGCAACG+AGG 0.764616 6_4:-22002342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAATTTAAGAGTTTA+AGG - chr6_4:21998996-21999015 None:intergenic 10.0%
!!! TTTAGAAGTAAATTTTTTTT+AGG + chr6_4:21999835-21999854 Msa0982320:intron 10.0%
!!! TTAGAAGTAAATTTTTTTTA+GGG + chr6_4:21999836-21999855 Msa0982320:intron 10.0%
!! TTTATGATTTATACATAAAT+CGG - chr6_4:22000788-22000807 None:intergenic 10.0%
!! ATTGATAAAAAAAAAATGAT+TGG + chr6_4:22000939-22000958 Msa0982320:intron 10.0%
!! TTGATAAAAAAAAAATGATT+GGG + chr6_4:22000940-22000959 Msa0982320:intron 10.0%
!! TTGATAAATTGATATAAAAT+AGG + chr6_4:22001247-22001266 Msa0982320:intron 10.0%
!! CTAATTAGAAATATTATTTA+GGG + chr6_4:22002736-22002755 Msa0982320:three_prime_UTR 10.0%
!!! AAGTAATTTTTTTTTTTGTA+GGG - chr6_4:22002839-22002858 None:intergenic 10.0%
!!! AACTTTTGATTATATGTTTA+TGG + chr6_4:21997311-21997330 Msa0982320:intron 15.0%
!!! ACTTTTGATTATATGTTTAT+GGG + chr6_4:21997312-21997331 Msa0982320:intron 15.0%
!! ATATTGGATTATAAAATCAA+AGG + chr6_4:21997727-21997746 Msa0982320:intron 15.0%
!!! TGATTTTTTTTTTTGACAAT+AGG - chr6_4:21997756-21997775 None:intergenic 15.0%
!! TTGTCAAAAAAAAAAATCAA+AGG + chr6_4:21997757-21997776 Msa0982320:intron 15.0%
!!! GCAAAATTTCTAAAATAAAT+AGG - chr6_4:21997786-21997805 None:intergenic 15.0%
!! AAATGAATCGTTTATAATTA+TGG + chr6_4:21998420-21998439 Msa0982320:intron 15.0%
!! TATTAGATATATGAAAATAG+TGG - chr6_4:21998630-21998649 None:intergenic 15.0%
!! TAAGTTCCTTATTATAAATA+AGG + chr6_4:21998830-21998849 Msa0982320:intron 15.0%
!! AAGTTCCTTATTATAAATAA+GGG + chr6_4:21998831-21998850 Msa0982320:intron 15.0%
!!! ATTAACCCTTATTTATAATA+AGG - chr6_4:21998839-21998858 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr6_4:21999319-21999338 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr6_4:21999318-21999337 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr6_4:21999127-21999146 Msa0982320:intron 15.0%
!! TAAACAAATTTGAATTAAGT+AGG + chr6_4:21999256-21999275 Msa0982320:intron 15.0%
!! AAACAAATTTGAATTAAGTA+GGG + chr6_4:21999257-21999276 Msa0982320:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr6_4:21999318-21999337 Msa0982320:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr6_4:21999319-21999338 Msa0982320:intron 15.0%
!! TAATTAACCCTATAAATAAT+AGG + chr6_4:21999383-21999402 Msa0982320:intron 15.0%
!! AATTAACCCTATAAATAATA+GGG + chr6_4:21999384-21999403 Msa0982320:intron 15.0%
!! ATTTAACCCTATTATTTATA+GGG - chr6_4:21999393-21999412 None:intergenic 15.0%
!! TATTTAACCCTATTATTTAT+AGG - chr6_4:21999394-21999413 None:intergenic 15.0%
!! AGAACTATTAAAATTAAGTA+AGG - chr6_4:21999458-21999477 None:intergenic 15.0%
!! AATTAAACAAATTTGAATTG+AGG - chr6_4:21999524-21999543 None:intergenic 15.0%
!! AAGATAAAATTATCAAAATC+TGG - chr6_4:21999650-21999669 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr6_4:21999227-21999246 Msa0982320:intron 15.0%
!! AAACCTATTAAAATTAAGTA+AGG + chr6_4:21999865-21999884 Msa0982320:intron 15.0%
!!! AATCCTTACTTAATTTTAAT+AGG - chr6_4:22002804-22002823 None:intergenic 15.0%
!! TGATAAAAAAAAAATGATTG+GGG + chr6_4:22000941-22000960 Msa0982320:intron 15.0%
!! AGATATACAAATACAAAATT+TGG + chr6_4:22001166-22001185 Msa0982320:intron 15.0%
!! GATATACAAATACAAAATTT+GGG + chr6_4:22001167-22001186 Msa0982320:intron 15.0%
!!! TAAAATTTTGGGATAAAAAA+AGG - chr6_4:22001645-22001664 None:intergenic 15.0%
!! AAATTTCATTATCCTAATAA+GGG - chr6_4:22001945-22001964 None:intergenic 15.0%
!!! ATAAATGAAAGTTTAACTTA+AGG + chr6_4:22002576-22002595 Msa0982320:three_prime_UTR 15.0%
!!! TAAATGAAAGTTTAACTTAA+GGG + chr6_4:22002577-22002596 Msa0982320:three_prime_UTR 15.0%
!!! CCTAAATAATATTTCTAATT+AGG - chr6_4:22002738-22002757 None:intergenic 15.0%
!! CCTAATTAGAAATATTATTT+AGG + chr6_4:22002735-22002754 Msa0982320:three_prime_UTR 15.0%
!!! AATCCTTACTTAATTTTAAT+AGG + chr6_4:22002804-22002823 Msa0982320:three_prime_UTR 15.0%
!! AAACCTATTAAAATTAAGTA+AGG - chr6_4:21999865-21999884 None:intergenic 15.0%
!!! GAAGTAATTTTTTTTTTTGT+AGG - chr6_4:22002840-22002859 None:intergenic 15.0%
!!! AATTATTTCTGCATTACTTT+AGG + chr6_4:21997195-21997214 Msa0982320:intron 20.0%
!!! CTTTTGATTATATGTTTATG+GGG + chr6_4:21997313-21997332 Msa0982320:intron 20.0%
!! AAATAAAACACATGAAGAAA+TGG - chr6_4:21997617-21997636 None:intergenic 20.0%
!! CTTTCTTAAGTTTATTCTAA+AGG - chr6_4:21997677-21997696 None:intergenic 20.0%
!! CAAAGAAGATTTATTGATAT+TGG + chr6_4:21997711-21997730 Msa0982320:intron 20.0%
!! TAATAGTGAATTGAAGTTAT+AGG - chr6_4:21997828-21997847 None:intergenic 20.0%
!!! TTTAATTGGTTTTACTTTTC+AGG + chr6_4:21998019-21998038 Msa0982320:intron 20.0%
!! TTTCCAAAATAAGTAAATTC+AGG - chr6_4:21998079-21998098 None:intergenic 20.0%
!! TAGAGAAGAAAAAATCATTT+AGG - chr6_4:21998670-21998689 None:intergenic 20.0%
!!! TTATTTTAATGTTGTTCAGA+AGG - chr6_4:21998810-21998829 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr6_4:21999162-21999181 Msa0982320:intron 20.0%
!!! AATAGGGTTAAATATGATTT+TGG + chr6_4:21999400-21999419 Msa0982320:intron 20.0%
!! GGCAAAGAAAAAAAAAATTA+GGG - chr6_4:21999487-21999506 None:intergenic 20.0%
!! AATTAAACAAACTTTGTAAC+AGG + chr6_4:21999805-21999824 Msa0982320:intron 20.0%
!! ATTAAACAAACTTTGTAACA+GGG + chr6_4:21999806-21999825 Msa0982320:intron 20.0%
!! ATAAGGTTAAATTCGAATTT+CGG - chr6_4:22000729-22000748 None:intergenic 20.0%
!! TACATGTTCAAAATAGAAAT+GGG - chr6_4:22000814-22000833 None:intergenic 20.0%
!! ATACATGTTCAAAATAGAAA+TGG - chr6_4:22000815-22000834 None:intergenic 20.0%
!!! TTTTTGGATTCTAATAATGA+GGG - chr6_4:22000841-22000860 None:intergenic 20.0%
!!! ATTTTTGGATTCTAATAATG+AGG - chr6_4:22000842-22000861 None:intergenic 20.0%
!!! AACAGCAAAAATGATATTTT+TGG - chr6_4:22000857-22000876 None:intergenic 20.0%
!! TTCTTTCAGATAAATATACT+AGG + chr6_4:22001010-22001029 Msa0982320:intron 20.0%
!! CAAATTTCATTATCCTAATA+AGG - chr6_4:22001946-22001965 None:intergenic 20.0%
!! TTCAATTTCTGTTTAAACTA+AGG + chr6_4:22002010-22002029 Msa0982320:intron 20.0%
!! GTTGTTTATATGTTAGAAAA+AGG + chr6_4:22002389-22002408 Msa0982320:three_prime_UTR 20.0%
!! CTTATTATAAGCATACAATA+AGG - chr6_4:22002499-22002518 None:intergenic 20.0%
!!! ATATTGTTTTGTTCATAACT+TGG + chr6_4:22002601-22002620 Msa0982320:three_prime_UTR 20.0%
!!! TTGGTAGTACTTAATAATTA+AGG + chr6_4:22002620-22002639 Msa0982320:three_prime_UTR 20.0%
!! TTATTGAAGAATTATACATC+AGG + chr6_4:22002652-22002671 Msa0982320:three_prime_UTR 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG + chr6_4:22002752-22002771 Msa0982320:three_prime_UTR 20.0%
!!! AAACATACTTTGTTGTAATA+GGG - chr6_4:22002873-22002892 None:intergenic 20.0%
!!! TAAACATACTTTGTTGTAAT+AGG - chr6_4:22002874-22002893 None:intergenic 20.0%
! TAAGCTGAACTAATTTATAC+AGG - chr6_4:21997547-21997566 None:intergenic 25.0%
! ACAAGGTATAACATTTACTT+CGG + chr6_4:21997576-21997595 Msa0982320:intron 25.0%
! AACTAAATTATTGTATGCAG+TGG + chr6_4:21997851-21997870 Msa0982320:intron 25.0%
! AATAACCACTTACAAAATCA+AGG + chr6_4:21998097-21998116 Msa0982320:five_prime_UTR 25.0%
! AACAAAATGTTTGACAGAAT+TGG - chr6_4:21998226-21998245 None:intergenic 25.0%
! AGCAACTTAATGAAAATGTA+GGG - chr6_4:21998606-21998625 None:intergenic 25.0%
! AAGCAACTTAATGAAAATGT+AGG - chr6_4:21998607-21998626 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr6_4:21998967-21998986 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr6_4:21998968-21998987 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr6_4:21999290-21999309 Msa0982320:intron 25.0%
!! TAAAAGATCCCAATTTTGTA+GGG - chr6_4:21999427-21999446 None:intergenic 25.0%
!! TTAAAAGATCCCAATTTTGT+AGG - chr6_4:21999428-21999447 None:intergenic 25.0%
! GGGCAAAGAAAAAAAAAATT+AGG - chr6_4:21999488-21999507 None:intergenic 25.0%
! AAACAAATTTGAATTGAGGA+AGG - chr6_4:21999520-21999539 None:intergenic 25.0%
!! CAATTTTTAACATCCTGTTA+CGG + chr6_4:22000219-22000238 Msa0982320:intron 25.0%
!!! TGATTTTTTTTAACCGTAAC+AGG - chr6_4:22000235-22000254 None:intergenic 25.0%
! TGTATGGATAAAAAATGGAT+CGG - chr6_4:22000505-22000524 None:intergenic 25.0%
! GATTCTGTATGGATAAAAAA+TGG - chr6_4:22000510-22000529 None:intergenic 25.0%
!! CAAATATTTTGTCGTATAGA+AGG - chr6_4:22000630-22000649 None:intergenic 25.0%
! TTCAGAAAAATTAGGACTTT+GGG - chr6_4:22000687-22000706 None:intergenic 25.0%
! TTTCAGAAAAATTAGGACTT+TGG - chr6_4:22000688-22000707 None:intergenic 25.0%
! ACATGTTCAAAATAGAAATG+GGG - chr6_4:22000813-22000832 None:intergenic 25.0%
!!! TATCATTTTTGCTGTTAGTT+TGG + chr6_4:22000861-22000880 Msa0982320:intron 25.0%
! AAAAAAAATGATTGGGGTTA+AGG + chr6_4:22000947-22000966 Msa0982320:intron 25.0%
! AAAAAAATGATTGGGGTTAA+GGG + chr6_4:22000948-22000967 Msa0982320:intron 25.0%
! TAACTCAGCATAAATATACT+AGG + chr6_4:22000971-22000990 Msa0982320:intron 25.0%
! TTAAAAAGAAGAAACCATGA+AGG + chr6_4:22001137-22001156 Msa0982320:intron 25.0%
! TTTCTGTTTAAACTAAGGTT+TGG + chr6_4:22002015-22002034 Msa0982320:intron 25.0%
!! AATGCAATCATGATATGTTT+TGG + chr6_4:22002367-22002386 Msa0982320:three_prime_UTR 25.0%
!! ATATGTTAGAAAAAGGCATA+CGG + chr6_4:22002396-22002415 Msa0982320:three_prime_UTR 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG + chr6_4:22002768-22002787 Msa0982320:three_prime_UTR 25.0%
!! TAGAAGTTCCCAATTTTATA+GGG - chr6_4:22002779-22002798 None:intergenic 25.0%
!! TTAGAAGTTCCCAATTTTAT+AGG - chr6_4:22002780-22002799 None:intergenic 25.0%
! AGGTATGTTATTTACTTCTC+TGG + chr6_4:21996935-21996954 Msa0982320:intron 30.0%
!!! ATGTTTATGGGGTTTTGTTT+TGG + chr6_4:21997324-21997343 Msa0982320:intron 30.0%
!!! GGTTTTGTTTTGGAATTAGT+AGG + chr6_4:21997334-21997353 Msa0982320:intron 30.0%
!! GTATGATTTGTTTATGACAC+TGG + chr6_4:21997461-21997480 Msa0982320:intron 30.0%
!! TCAGCTTATTTTCATGAACA+AGG + chr6_4:21997559-21997578 Msa0982320:intron 30.0%
ATCAATGGACAATATTTCAG+AGG - chr6_4:21997648-21997667 None:intergenic 30.0%
! TTCTAAAGGTTAGTGATCAA+TGG - chr6_4:21997663-21997682 None:intergenic 30.0%
! TTGAAGTTATAGGTTGACAT+TGG - chr6_4:21997818-21997837 None:intergenic 30.0%
TAGAATCAGATAACAAACCT+TGG + chr6_4:21997934-21997953 Msa0982320:five_prime_UTR 30.0%
CAAGACTAAAACAAACCAAA+CGG - chr6_4:21997987-21998006 None:intergenic 30.0%
!!! TGCTGTTTTCTCACTTTAAT+TGG + chr6_4:21998005-21998024 Msa0982320:intron 30.0%
CCAAAATAAGTAAATTCAGG+AGG - chr6_4:21998076-21998095 None:intergenic 30.0%
! CCTCCTGAATTTACTTATTT+TGG + chr6_4:21998073-21998092 Msa0982320:five_prime_UTR 30.0%
! GATTACCTTGATTTTGTAAG+TGG - chr6_4:21998105-21998124 None:intergenic 30.0%
ATTCAATAGAAGTGGACAAA+AGG - chr6_4:21998153-21998172 None:intergenic 30.0%
TATTGAATGCTATTGCAAAC+TGG + chr6_4:21998165-21998184 Msa0982320:intron 30.0%
ATTATGGTAGAAGTAGCAAA+TGG + chr6_4:21998436-21998455 Msa0982320:intron 30.0%
TTATGGTAGAAGTAGCAAAT+GGG + chr6_4:21998437-21998456 Msa0982320:intron 30.0%
AAATGTAGGGAAAAAACACT+AGG - chr6_4:21998593-21998612 None:intergenic 30.0%
CACATTTATTAGAACTGCTT+AGG - chr6_4:21998728-21998747 None:intergenic 30.0%
! AGCAGTTCTAATAAATGTGA+TGG + chr6_4:21998729-21998748 Msa0982320:intron 30.0%
!! TAATAAATGTGATGGATCAG+AGG + chr6_4:21998737-21998756 Msa0982320:intron 30.0%
GTAGTAAGAATAACGTAATG+TGG + chr6_4:21998772-21998791 Msa0982320:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr6_4:21998874-21998893 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr6_4:21998875-21998894 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr6_4:21999289-21999308 Msa0982320:intron 30.0%
!! TTACAACGTCGCTATTTTAT+AGG + chr6_4:21999349-21999368 Msa0982320:intron 30.0%
!! TACAACGTCGCTATTTTATA+GGG + chr6_4:21999350-21999369 Msa0982320:intron 30.0%
!! ATTTTGGTCCCTACAAAATT+GGG + chr6_4:21999416-21999435 Msa0982320:intron 30.0%
ATTGAGGAAGGACTAATATT+GGG - chr6_4:21999508-21999527 None:intergenic 30.0%
AATTGAGGAAGGACTAATAT+TGG - chr6_4:21999509-21999528 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr6_4:21999746-21999765 None:intergenic 30.0%
ATTAAACTTAGAAGTTCCCA+TGG + chr6_4:21999888-21999907 Msa0982320:intron 30.0%
! AAATCTCGCACATATTCTTT+TGG + chr6_4:22000008-22000027 Msa0982320:intron 30.0%
! AATCTCGCACATATTCTTTT+GGG + chr6_4:22000009-22000028 Msa0982320:intron 30.0%
TGGTAAGGATGAAAAATGAA+GGG - chr6_4:22000352-22000371 None:intergenic 30.0%
ATGGTAAGGATGAAAAATGA+AGG - chr6_4:22000353-22000372 None:intergenic 30.0%
CGAAGAAAAAGTGATTACTT+TGG - chr6_4:22000472-22000491 None:intergenic 30.0%
GTATGGATAAAAAATGGATC+GGG - chr6_4:22000504-22000523 None:intergenic 30.0%
TATCCATACAGAATCACTAA+AGG + chr6_4:22000515-22000534 Msa0982320:intron 30.0%
CAGAAAAATATGTAGAACGA+TGG - chr6_4:22000660-22000679 None:intergenic 30.0%
TCAGAAAAATTAGGACTTTG+GGG - chr6_4:22000686-22000705 None:intergenic 30.0%
ATTGGGGTTTCAGAAAAATT+AGG - chr6_4:22000695-22000714 None:intergenic 30.0%
TAACTCAGAGGAATGATATA+AGG - chr6_4:22000746-22000765 None:intergenic 30.0%
ATCAAATCAAACTAACTCAG+AGG - chr6_4:22000758-22000777 None:intergenic 30.0%
CATGTTCAAAATAGAAATGG+GGG - chr6_4:22000812-22000831 None:intergenic 30.0%
ATTTCATCTTGATGAGTCTA+TGG + chr6_4:22000902-22000921 Msa0982320:intron 30.0%
TTTCATCTTGATGAGTCTAT+GGG + chr6_4:22000903-22000922 Msa0982320:intron 30.0%
GTATATCTTGAATTCCTTCA+TGG - chr6_4:22001154-22001173 None:intergenic 30.0%
GCAATATGAAGAATTGTTTC+AGG - chr6_4:22001222-22001241 None:intergenic 30.0%
GTACATACTTACTATCAGTT+AGG - chr6_4:22001319-22001338 None:intergenic 30.0%
ACCTCAAAACAAATTCATCA+AGG + chr6_4:22001370-22001389 Msa0982320:intron 30.0%
!!! TCCTTGATGAATTTGTTTTG+AGG - chr6_4:22001374-22001393 None:intergenic 30.0%
!!! GAGTTTGGGATATTGATTTT+CGG + chr6_4:22001435-22001454 Msa0982320:intron 30.0%
!!! AGTTTGGGATATTGATTTTC+GGG + chr6_4:22001436-22001455 Msa0982320:intron 30.0%
!!! TTTTCGGGGATATTGATTTT+TGG + chr6_4:22001451-22001470 Msa0982320:intron 30.0%
TTTCGTTATCACTTTAGTTG+CGG - chr6_4:22001590-22001609 None:intergenic 30.0%
! CTGTTTTGTGAGAAAGAAAA+CGG - chr6_4:22001723-22001742 None:intergenic 30.0%
!! AGTTATTTTCCTATGCCATT+TGG + chr6_4:22001872-22001891 Msa0982320:intron 30.0%
AATGCATACATCAAGTTCAT+AGG - chr6_4:22001990-22002009 None:intergenic 30.0%
! TCTCTATCTTTTCTCAAGAA+AGG + chr6_4:22002274-22002293 Msa0982320:CDS 30.0%
AACATACTCTACATTGGATT+CGG - chr6_4:22002462-22002481 None:intergenic 30.0%
CATACAATAAGGCAGAATTT+AGG - chr6_4:22002488-22002507 None:intergenic 30.0%
CGTAATTTCGAATTCTAACT+AGG - chr6_4:22002529-22002548 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+AGG + chr6_4:22002693-22002712 Msa0982320:three_prime_UTR 30.0%
TTCCTTATGGAATTCATCAT+AGG - chr6_4:22002698-22002717 None:intergenic 30.0%
TCAAGTAATCATGTTCCTTA+TGG - chr6_4:22002711-22002730 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG + chr6_4:22002767-22002786 Msa0982320:three_prime_UTR 30.0%
AGATAAAGAGTTGACGAAGA+TGG - chr6_4:21997033-21997052 None:intergenic 35.0%
TATCGCAAGACAAGTGAATT+TGG + chr6_4:21997130-21997149 Msa0982320:intron 35.0%
TGGAATTAGTAGGAAATGTG+AGG + chr6_4:21997344-21997363 Msa0982320:intron 35.0%
GGAATTAGTAGGAAATGTGA+GGG + chr6_4:21997345-21997364 Msa0982320:intron 35.0%
! TTCAATTAGTTCTTTGACGC+TGG + chr6_4:21997510-21997529 Msa0982320:intron 35.0%
TCAGATAACAAACCTTGGTA+AGG + chr6_4:21997939-21997958 Msa0982320:intron 35.0%
ACAAACCTTGGTAAGGAATA+TGG + chr6_4:21997946-21997965 Msa0982320:intron 35.0%
! CCAAACGGTTTTTCTCTATT+TGG - chr6_4:21997972-21997991 None:intergenic 35.0%
CCAAATAGAGAAAAACCGTT+TGG + chr6_4:21997969-21997988 Msa0982320:intron 35.0%
TACTAATCCAACACACCATA+TGG + chr6_4:21998126-21998145 Msa0982320:intron 35.0%
GCAATAGCATTCAATAGAAG+TGG - chr6_4:21998161-21998180 None:intergenic 35.0%
CATAAGACAATCCAACAAAG+AGG + chr6_4:21998197-21998216 Msa0982320:intron 35.0%
! CACTTGCGTTTTCATCTTAA+TGG - chr6_4:21998325-21998344 None:intergenic 35.0%
!! CACAAGCATTTGTTATTGCA+AGG - chr6_4:21998387-21998406 None:intergenic 35.0%
TATGGTAGAAGTAGCAAATG+GGG + chr6_4:21998438-21998457 Msa0982320:intron 35.0%
ACTCGGACTAAAACAATCTA+TGG - chr6_4:21998479-21998498 None:intergenic 35.0%
AAAAAACACTAGGTCGATCT+AGG - chr6_4:21998583-21998602 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr6_4:21999334-21999353 None:intergenic 35.0%
CAAGAGTAGAACACTATGAA+AGG + chr6_4:21999030-21999049 Msa0982320:intron 35.0%
!! GATTTTGGTCCCTACAAAAT+TGG + chr6_4:21999415-21999434 Msa0982320:intron 35.0%
!!! TTTGCGACAATTTTTTGCAG+AGG - chr6_4:21999612-21999631 None:intergenic 35.0%
! TAGTTTGTGTTCATGTGTCA+TGG - chr6_4:21999959-21999978 None:intergenic 35.0%
!!! AGGTTTTGAGAAGAATGGTA+AGG - chr6_4:22000367-22000386 None:intergenic 35.0%
!!! GTTTGAGGTTTTGAGAAGAA+TGG - chr6_4:22000372-22000391 None:intergenic 35.0%
GATCCTTTAGTGATTCTGTA+TGG - chr6_4:22000521-22000540 None:intergenic 35.0%
GAATCACTAAAGGATCAGAA+TGG + chr6_4:22000525-22000544 Msa0982320:intron 35.0%
TTTCGGAGCATAAACAGATT+GGG - chr6_4:22000712-22000731 None:intergenic 35.0%
ATTTCGGAGCATAAACAGAT+TGG - chr6_4:22000713-22000732 None:intergenic 35.0%
AAGAATTGTTTCAGGCTTTC+AGG - chr6_4:22001214-22001233 None:intergenic 35.0%
AACACTTACAGGTACAAAGT+AGG - chr6_4:22001284-22001303 None:intergenic 35.0%
!!! GTTTGGGATATTGATTTTCG+GGG + chr6_4:22001437-22001456 Msa0982320:intron 35.0%
!!! GGATATTGATTTTTGGTCCA+GGG + chr6_4:22001458-22001477 Msa0982320:intron 35.0%
!! AAAATTGTCACTTTAGTCCC+TGG - chr6_4:22001478-22001497 None:intergenic 35.0%
! AAATAGTATGAGGTGTCACA+GGG - chr6_4:22001517-22001536 None:intergenic 35.0%
TGATGCTGACAAATAGTATG+AGG - chr6_4:22001527-22001546 None:intergenic 35.0%
TTCGTTATCACTTTAGTTGC+GGG - chr6_4:22001589-22001608 None:intergenic 35.0%
GGGATAAAAAAAGGAGTCAA+TGG - chr6_4:22001636-22001655 None:intergenic 35.0%
AATGAGTTTCGTCCCTTATT+AGG + chr6_4:22001930-22001949 Msa0982320:intron 35.0%
AATGGGAAAGGGTTTGATAT+GGG + chr6_4:22002048-22002067 Msa0982320:exon 35.0%
AGTATTCAGCAGCATCAATT+AGG - chr6_4:22002255-22002274 None:intergenic 35.0%
TTCATACTAAACTGCAACGA+GGG - chr6_4:22002344-22002363 None:intergenic 35.0%
AAGGCATACGGTATTCAAAA+TGG + chr6_4:22002408-22002427 Msa0982320:three_prime_UTR 35.0%
AGGCTTAACATACTCTACAT+TGG - chr6_4:22002468-22002487 None:intergenic 35.0%
TTATACATCAGGCTTGATGA+AGG + chr6_4:22002663-22002682 Msa0982320:three_prime_UTR 35.0%
TATACATCAGGCTTGATGAA+GGG + chr6_4:22002664-22002683 Msa0982320:three_prime_UTR 35.0%
CCTAAAGTAATCGATGAGAG+TGG - chr6_4:21997244-21997263 None:intergenic 40.0%
! CCACTCTCATCGATTACTTT+AGG + chr6_4:21997241-21997260 Msa0982320:intron 40.0%
TTAGTAGGAAATGTGAGGGA+AGG + chr6_4:21997349-21997368 Msa0982320:intron 40.0%
TTGTATGCAGTGGTCTCAAA+AGG + chr6_4:21997861-21997880 Msa0982320:intron 40.0%
TGTATGCAGTGGTCTCAAAA+GGG + chr6_4:21997862-21997881 Msa0982320:intron 40.0%
TTTGGCCATATTCCTTACCA+AGG - chr6_4:21997954-21997973 None:intergenic 40.0%
AAAAGGACCATATGGTGTGT+TGG - chr6_4:21998136-21998155 None:intergenic 40.0%
AAGTGGACAAAAGGACCATA+TGG - chr6_4:21998144-21998163 None:intergenic 40.0%
AGAATTGGAAGCCTCTTTGT+TGG - chr6_4:21998211-21998230 None:intergenic 40.0%
TTGAACACACATGAGACACT+CGG - chr6_4:21998496-21998515 None:intergenic 40.0%
! TGGCCCAATTCTGATTAGTT+CGG - chr6_4:22000291-22000310 None:intergenic 40.0%
TGAAGGGAAAGAGAAGAAAC+CGG - chr6_4:22000336-22000355 None:intergenic 40.0%
TCACTAAAGGATCAGAATGG+AGG + chr6_4:22000528-22000547 Msa0982320:intron 40.0%
CACTAAAGGATCAGAATGGA+GGG + chr6_4:22000529-22000548 Msa0982320:intron 40.0%
GCTTCGAAACTCCTTCAAAA+CGG - chr6_4:22000559-22000578 None:intergenic 40.0%
TCGATTGTTGAAATTGAGCC+CGG - chr6_4:22000586-22000605 None:intergenic 40.0%
TTCGGAGCATAAACAGATTG+GGG - chr6_4:22000711-22000730 None:intergenic 40.0%
ACCTGTAAGTGTTTACTGTC+AGG + chr6_4:22001291-22001310 Msa0982320:intron 40.0%
CCTGTAAGTGTTTACTGTCA+GGG + chr6_4:22001292-22001311 Msa0982320:intron 40.0%
!!! GAATTTGTTTTGAGGTTGCG+AGG - chr6_4:22001366-22001385 None:intergenic 40.0%
!!! GGGATATTGATTTTTGGTCC+AGG + chr6_4:22001457-22001476 Msa0982320:intron 40.0%
! CAAATAGTATGAGGTGTCAC+AGG - chr6_4:22001518-22001537 None:intergenic 40.0%
! TGATAACGAAAGTGCAGAGT+CGG + chr6_4:22001599-22001618 Msa0982320:intron 40.0%
GTCGGGACTAAGAAGAATTA+GGG - chr6_4:22001690-22001709 None:intergenic 40.0%
AGAGAAGAAAGAGACAAACC+TGG - chr6_4:22001838-22001857 None:intergenic 40.0%
CTTTGTAATCCAGCTCCAAA+TGG - chr6_4:22001890-22001909 None:intergenic 40.0%
GAATGGGAAAGGGTTTGATA+TGG + chr6_4:22002047-22002066 Msa0982320:intron 40.0%
AAAGGGTTTGATATGGGTGA+CGG + chr6_4:22002054-22002073 Msa0982320:CDS 40.0%
! TGAGGTACGTGCAATGTTTT+GGG + chr6_4:22002192-22002211 Msa0982320:CDS 40.0%
GTTCATACTAAACTGCAACG+AGG - chr6_4:22002345-22002364 None:intergenic 40.0%
ATACCTTTCACGACGACGAT+GGG - chr6_4:21996921-21996940 None:intergenic 45.0%
AGAGTTGACGAAGATGGTGA+TGG - chr6_4:21997027-21997046 None:intergenic 45.0%
GGGTGTAACAGACACAACAT+TGG + chr6_4:21997882-21997901 Msa0982320:five_prime_UTR 45.0%
! ATCTGATTCTAGCTGCAGAG+TGG - chr6_4:21997925-21997944 None:intergenic 45.0%
AACACTAGGTCGATCTAGGT+GGG - chr6_4:21998579-21998598 None:intergenic 45.0%
AAACACTAGGTCGATCTAGG+TGG - chr6_4:21998580-21998599 None:intergenic 45.0%
GGATCAGAGGCTAATTAGCA+TGG + chr6_4:21998750-21998769 Msa0982320:intron 45.0%
ATTATGTAGTCCGTGACCGA+CGG - chr6_4:21999932-21999951 None:intergenic 45.0%
GTTATTGACACCACCATCTC+AGG + chr6_4:22000256-22000275 Msa0982320:intron 45.0%
ACCCCCGAACTAATCAGAAT+TGG + chr6_4:22000284-22000303 Msa0982320:intron 45.0%
! CCCAATTCTGATTAGTTCGG+GGG - chr6_4:22000288-22000307 None:intergenic 45.0%
CCCCCGAACTAATCAGAATT+GGG + chr6_4:22000285-22000304 Msa0982320:intron 45.0%
! GCCCAATTCTGATTAGTTCG+GGG - chr6_4:22000289-22000308 None:intergenic 45.0%
! GGCCCAATTCTGATTAGTTC+GGG - chr6_4:22000290-22000309 None:intergenic 45.0%
TTGATGAAGGAGGTTGGGAT+TGG - chr6_4:22000311-22000330 None:intergenic 45.0%
GAAGAAACCGGGTTTGATGA+AGG - chr6_4:22000324-22000343 None:intergenic 45.0%
GAAGGGAAAGAGAAGAAACC+GGG - chr6_4:22000335-22000354 None:intergenic 45.0%
AGCAGAGATCGTTGTGTTTG+AGG - chr6_4:22000387-22000406 None:intergenic 45.0%
GTGATTACTTTGGCCAAACG+AGG - chr6_4:22000462-22000481 None:intergenic 45.0%
AAGGAGTTTCGAAGCAACTC+CGG + chr6_4:22000564-22000583 Msa0982320:intron 45.0%
! TTGTTTCAGGCTTTCAGGTC+TGG - chr6_4:22001209-22001228 None:intergenic 45.0%
CCCTGACAGTAAACACTTAC+AGG - chr6_4:22001295-22001314 None:intergenic 45.0%
!! TTGCGAGGAGACTTGTTGTT+AGG - chr6_4:22001351-22001370 None:intergenic 45.0%
GTTGCTCTTCGTCAAGAACT+GGG - chr6_4:22001402-22001421 None:intergenic 45.0%
TGTTGCTCTTCGTCAAGAAC+TGG - chr6_4:22001403-22001422 None:intergenic 45.0%
ACGAAGAGCAACACTTCGTT+GGG + chr6_4:22001410-22001429 Msa0982320:intron 45.0%
ACACTTCGTTGGGATGAGTT+TGG + chr6_4:22001420-22001439 Msa0982320:intron 45.0%
CACTTCGTTGGGATGAGTTT+GGG + chr6_4:22001421-22001440 Msa0982320:intron 45.0%
! GATAACGAAAGTGCAGAGTC+GGG + chr6_4:22001600-22001619 Msa0982320:intron 45.0%
! ATAACGAAAGTGCAGAGTCG+GGG + chr6_4:22001601-22001620 Msa0982320:intron 45.0%
GGTCGGGACTAAGAAGAATT+AGG - chr6_4:22001691-22001710 None:intergenic 45.0%
GAAAGAAAACGGTGTGCAAC+TGG - chr6_4:22001712-22001731 None:intergenic 45.0%
AGAAAGAGACAAACCTGGAC+AGG - chr6_4:22001833-22001852 None:intergenic 45.0%
! TTTCCTATGCCATTTGGAGC+TGG + chr6_4:22001878-22001897 Msa0982320:intron 45.0%
AATCCAGCTCCAAATGGCAT+AGG - chr6_4:22001884-22001903 None:intergenic 45.0%
!! AGGTTTGGTGTGTTGCAGAA+TGG + chr6_4:22002030-22002049 Msa0982320:intron 45.0%
!! GGTTTGGTGTGTTGCAGAAT+GGG + chr6_4:22002031-22002050 Msa0982320:intron 45.0%
GTGTGTTGCAGAATGGGAAA+GGG + chr6_4:22002037-22002056 Msa0982320:intron 45.0%
AAGACTAGCGAAGAAAGCTG+AGG + chr6_4:22002174-22002193 Msa0982320:CDS 45.0%
! CTGAGGTACGTGCAATGTTT+TGG + chr6_4:22002191-22002210 Msa0982320:CDS 45.0%
!! GTACGTGCAATGTTTTGGGT+GGG + chr6_4:22002196-22002215 Msa0982320:CDS 45.0%
! TTTGGGTGGGTTCTGATGAA+CGG + chr6_4:22002209-22002228 Msa0982320:CDS 45.0%
GTTGATCAGGTAATGTGACG+AGG - chr6_4:22002310-22002329 None:intergenic 45.0%
!! GGAAATGGAAGGTGTTGATC+AGG - chr6_4:22002323-22002342 None:intergenic 45.0%
CTAAACTGCAACGAGGGAAA+TGG - chr6_4:22002338-22002357 None:intergenic 45.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr6_4:21998934-21998953 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr6_4:21998935-21998954 None:intergenic 5.0%
!!! TAAATATGAATTTTTTAAAA+CGG - chr6_4:21999094-21999113 None:intergenic 5.0%
!!! AAAAAATCAAATAAAATTTT+GGG - chr6_4:22001656-22001675 None:intergenic 5.0%
!!! AAAAAAATCAAATAAAATTT+TGG - chr6_4:22001657-22001676 None:intergenic 5.0%
ACAGAAAGACGGATAGGACG+CGG - chr6_4:21996889-21996908 None:intergenic 50.0%
CCTATCCGTCTTTCTGTCAC+CGG + chr6_4:21996892-21996911 Msa0982320:five_prime_UTR 50.0%
GGAAACCGGTGACAGAAAGA+CGG - chr6_4:21996900-21996919 None:intergenic 50.0%
TTTCCCATCGTCGTCGTGAA+AGG + chr6_4:21996915-21996934 Msa0982320:five_prime_UTR 50.0%
CATACCTTTCACGACGACGA+TGG - chr6_4:21996922-21996941 None:intergenic 50.0%
CATGAAGAAATGGAGTCGCG+AGG - chr6_4:21997607-21997626 None:intergenic 50.0%
GGTAGAAGTAGCAAATGGGG+AGG + chr6_4:21998441-21998460 Msa0982320:intron 50.0%
TTGCCAGACCAGTCATCAAG+TGG + chr6_4:21998528-21998547 Msa0982320:intron 50.0%
TGCCAGACCAGTCATCAAGT+GGG + chr6_4:21998529-21998548 Msa0982320:intron 50.0%
! ATCATGCCCCACTTGATGAC+TGG - chr6_4:21998539-21998558 None:intergenic 50.0%
ACACTAGGTCGATCTAGGTG+GGG - chr6_4:21998578-21998597 None:intergenic 50.0%
AGAAGTTCCCATGGACAGCA+TGG + chr6_4:21999897-21999916 Msa0982320:intron 50.0%
GAAGTTCCCATGGACAGCAT+GGG + chr6_4:21999898-21999917 Msa0982320:intron 50.0%
CGGGTTTGATGAAGGAGGTT+GGG - chr6_4:22000316-22000335 None:intergenic 50.0%
CCAACCTCCTTCATCAAACC+CGG + chr6_4:22000314-22000333 Msa0982320:intron 50.0%
GAAACCGGGTTTGATGAAGG+AGG - chr6_4:22000321-22000340 None:intergenic 50.0%
!!! TGGAGGGCATTCCGTTTTGA+AGG + chr6_4:22000545-22000564 Msa0982320:intron 50.0%
AGGAGTTTCGAAGCAACTCC+GGG + chr6_4:22000565-22000584 Msa0982320:intron 50.0%
GACGAAGAGCAACACTTCGT+TGG + chr6_4:22001409-22001428 Msa0982320:intron 50.0%
AAAACGGTGTGCAACTGGTC+GGG - chr6_4:22001707-22001726 None:intergenic 50.0%
GAAAACGGTGTGCAACTGGT+CGG - chr6_4:22001708-22001727 None:intergenic 50.0%
GGTGTGTTGCAGAATGGGAA+AGG + chr6_4:22002036-22002055 Msa0982320:intron 50.0%
! TTTGATATGGGTGACGGCAG+AGG + chr6_4:22002060-22002079 Msa0982320:CDS 50.0%
CAGAGGATCTGCATAGGAAC+AGG + chr6_4:22002077-22002096 Msa0982320:CDS 50.0%
GTGGCAACGAAGGAGAATTG+AGG - chr6_4:22002141-22002160 None:intergenic 50.0%
!! GGTACGTGCAATGTTTTGGG+TGG + chr6_4:22002195-22002214 Msa0982320:CDS 50.0%
GATCAGGTAATGTGACGAGG+AGG - chr6_4:22002307-22002326 None:intergenic 50.0%
ACTGCAACGAGGGAAATGGA+AGG - chr6_4:22002334-22002353 None:intergenic 50.0%
! CTACATTGGATTCGGCTCGT+AGG - chr6_4:22002454-22002473 None:intergenic 50.0%
CCGGTGACAGAAAGACGGAT+AGG - chr6_4:21996895-21996914 None:intergenic 55.0%
TCACGACGACGATGGGAAAC+CGG - chr6_4:21996914-21996933 None:intergenic 55.0%
GCCAGACCAGTCATCAAGTG+GGG + chr6_4:21998530-21998549 Msa0982320:intron 55.0%
CACTAGGTCGATCTAGGTGG+GGG - chr6_4:21998577-21998596 None:intergenic 55.0%
ATGCTGCCCATGCTGTCCAT+GGG - chr6_4:21999907-21999926 None:intergenic 55.0%
AATGCTGCCCATGCTGTCCA+TGG - chr6_4:21999908-21999927 None:intergenic 55.0%
AGCATGGGCAGCATTACCGT+CGG + chr6_4:21999913-21999932 Msa0982320:intron 55.0%
GGGGTATAAGCCTGAGATGG+TGG - chr6_4:22000269-22000288 None:intergenic 55.0%
! TCGGGGGTATAAGCCTGAGA+TGG - chr6_4:22000272-22000291 None:intergenic 55.0%
CCGGGTTTGATGAAGGAGGT+TGG - chr6_4:22000317-22000336 None:intergenic 55.0%
CCAAACGAGGCTGATCTCAG+CGG - chr6_4:22000449-22000468 None:intergenic 55.0%
TGACGGCAGAGGATCTGCAT+AGG + chr6_4:22002071-22002090 Msa0982320:CDS 55.0%
AGTCTTGCAGCGAAGGTCAG+TGG - chr6_4:22002160-22002179 None:intergenic 55.0%
!! CTTCGCTAGTCTTGCAGCGA+AGG - chr6_4:22002167-22002186 None:intergenic 55.0%
GAAAGACGGATAGGACGCGG+CGG - chr6_4:21996886-21996905 None:intergenic 60.0%
! GCCCCACTTGATGACTGGTC+TGG - chr6_4:21998534-21998553 None:intergenic 60.0%
GTCGATCTAGGTGGGGGAAG+TGG - chr6_4:21998571-21998590 None:intergenic 60.0%
GGCAGCATTACCGTCGGTCA+CGG + chr6_4:21999919-21999938 Msa0982320:intron 60.0%
!! TCAGCGGTGGTGGGGGAAAA+AGG - chr6_4:22000433-22000452 None:intergenic 60.0%
AGGCTGATCTCAGCGGTGGT+GGG - chr6_4:22000442-22000461 None:intergenic 60.0%
AACGAGGCTGATCTCAGCGG+TGG - chr6_4:22000446-22000465 None:intergenic 60.0%
CCGCTGAGATCAGCCTCGTT+TGG + chr6_4:22000446-22000465 Msa0982320:intron 60.0%
! TGGGCGTGGTGGTGTATGGA+GGG - chr6_4:22001801-22001820 None:intergenic 60.0%
GCGAAGGTCAGTGGCAACGA+AGG - chr6_4:22002151-22002170 None:intergenic 60.0%
! GTGGTGGGGGAAAAAGGCGG+CGG - chr6_4:22000427-22000446 None:intergenic 65.0%
!! GCGGTGGTGGGGGAAAAAGG+CGG - chr6_4:22000430-22000449 None:intergenic 65.0%
! GCTGATCTCAGCGGTGGTGG+GGG - chr6_4:22000440-22000459 None:intergenic 65.0%
GGCTGATCTCAGCGGTGGTG+GGG - chr6_4:22000441-22000460 None:intergenic 65.0%
GAGGCTGATCTCAGCGGTGG+TGG - chr6_4:22000443-22000462 None:intergenic 65.0%
! GTGGGCGTGGTGGTGTATGG+AGG - chr6_4:22001802-22001821 None:intergenic 65.0%
! TGCGTGGGCGTGGTGGTGTA+TGG - chr6_4:22001805-22001824 None:intergenic 65.0%
CCTGGACAGGTGAGCTGCGT+GGG - chr6_4:22001820-22001839 None:intergenic 65.0%
ACCTGGACAGGTGAGCTGCG+TGG - chr6_4:22001821-22001840 None:intergenic 65.0%
ACGGATAGGACGCGGCGGAG+CGG - chr6_4:21996881-21996900 None:intergenic 70.0%
GTGGGGGAAAAAGGCGGCGG+CGG - chr6_4:22000424-22000443 None:intergenic 70.0%
TATGGAGGGCCGCCGGAGAG+GGG - chr6_4:22001787-22001806 None:intergenic 70.0%
GTATGGAGGGCCGCCGGAGA+GGG - chr6_4:22001788-22001807 None:intergenic 70.0%
TGTATGGAGGGCCGCCGGAG+AGG - chr6_4:22001789-22001808 None:intergenic 70.0%
GGTGGTGTATGGAGGGCCGC+CGG - chr6_4:22001794-22001813 None:intergenic 70.0%
ACAGGTGAGCTGCGTGGGCG+TGG - chr6_4:22001815-22001834 None:intergenic 70.0%
CCCACGCAGCTCACCTGTCC+AGG + chr6_4:22001817-22001836 Msa0982320:five_prime_UTR 70.0%
AAGGCGGCGGCGGCAGGCTA+GGG - chr6_4:22000414-22000433 None:intergenic 75.0%
AAAGGCGGCGGCGGCAGGCT+AGG - chr6_4:22000415-22000434 None:intergenic 75.0%
GGGAAAAAGGCGGCGGCGGC+AGG - chr6_4:22000420-22000439 None:intergenic 75.0%
AGCTCGCCGCCACCCCTCTC+CGG + chr6_4:22001772-22001791 Msa0982320:five_prime_UTR 75.0%
GGTGAGCTGCGTGGGCGTGG+TGG - chr6_4:22001812-22001831 None:intergenic 75.0%
! TCGCCGCCACCCCTCTCCGG+CGG + chr6_4:22001775-22001794 Msa0982320:five_prime_UTR 80.0%
! GGGCCGCCGGAGAGGGGTGG+CGG - chr6_4:22001781-22001800 None:intergenic 85.0%
! GGAGGGCCGCCGGAGAGGGG+TGG - chr6_4:22001784-22001803 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21996872 22002932 21996872 ID=Msa0982320;Name=Msa0982320
chr6_4 mRNA 21996872 22002932 21996872 ID=Msa0982320-mRNA-1;Parent=Msa0982320;Name=Msa0982320-mRNA-1;_AED=0.20;_eAED=0.20;_QI=355|1|1|1|0|0.4|5|608|91
chr6_4 exon 21996872 21996936 21996872 ID=Msa0982320-mRNA-1:exon:6904;Parent=Msa0982320-mRNA-1
chr6_4 exon 21997871 21997955 21997871 ID=Msa0982320-mRNA-1:exon:6905;Parent=Msa0982320-mRNA-1
chr6_4 exon 21998041 21998118 21998041 ID=Msa0982320-mRNA-1:exon:6906;Parent=Msa0982320-mRNA-1
chr6_4 exon 22001713 22001838 22001713 ID=Msa0982320-mRNA-1:exon:6907;Parent=Msa0982320-mRNA-1
chr6_4 exon 22002048 22002932 22002048 ID=Msa0982320-mRNA-1:exon:6908;Parent=Msa0982320-mRNA-1
chr6_4 five_prime_UTR 21996872 21996936 21996872 ID=Msa0982320-mRNA-1:five_prime_utr;Parent=Msa0982320-mRNA-1
chr6_4 five_prime_UTR 21997871 21997955 21997871 ID=Msa0982320-mRNA-1:five_prime_utr;Parent=Msa0982320-mRNA-1
chr6_4 five_prime_UTR 21998041 21998118 21998041 ID=Msa0982320-mRNA-1:five_prime_utr;Parent=Msa0982320-mRNA-1
chr6_4 five_prime_UTR 22001713 22001838 22001713 ID=Msa0982320-mRNA-1:five_prime_utr;Parent=Msa0982320-mRNA-1
chr6_4 five_prime_UTR 22002048 22002048 22002048 ID=Msa0982320-mRNA-1:five_prime_utr;Parent=Msa0982320-mRNA-1
chr6_4 CDS 22002049 22002324 22002049 ID=Msa0982320-mRNA-1:cds;Parent=Msa0982320-mRNA-1
chr6_4 three_prime_UTR 22002325 22002932 22002325 ID=Msa0982320-mRNA-1:three_prime_utr;Parent=Msa0982320-mRNA-1
Gene Sequence

>Msa0982320

ATGGGAAAGGGTTTGATATGGGTGACGGCAGAGGATCTGCATAGGAACAGGAGTCGAGTTCTGTCGCTATATCGTCACATTCTGCGAAGCCTCAATTCTCCTTCGTTGCCACTGACCTTCGCTGCAAGACTAGCGAAGAAAGCTGAGGTACGTGCAATGTTTTGGGTGGGTTCTGATGAACGGTCTTTGCATAACATTGCTGACCTAATTGATGCTGCTGAATACTCTCTATCTTTTCTCAAGAAAGGTCAATTTCCTCCTCGTCACATTACCTGA
Protein sequence

>Msa0982320

MGKGLIWVTAEDLHRNRSRVLSLYRHILRSLNSPSLPLTFAARLAKKAEVRAMFWVGSDERSLHNIADLIDAAEYSLSFLKKGQFPPRHIT*