AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0990480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0990480 MtrunA17_Chr1g0165671 74.837 461 114 2 1 461 19 477 0.0 719
Msa0990480 MtrunA17_Chr1g0165661 74.620 461 114 1 1 461 1 458 0.0 715
Msa0990480 MtrunA17_Chr1g0165681 72.234 461 128 0 1 461 1 461 0.0 709
Msa0990480 MtrunA17_Chr1g0165711 64.208 461 121 4 1 461 1 417 0.0 592
Msa0990480 MtrunA17_Chr6g0471381 95.472 265 12 0 197 461 6 270 0.0 527
Msa0990480 MtrunA17_Chr7g0273781 55.973 452 188 6 2 448 36 481 0.0 525
Msa0990480 MtrunA17_Chr7g0273791 56.667 450 184 6 5 449 6 449 0.0 522
Msa0990480 MtrunA17_Chr5g0433641 56.027 448 191 5 5 449 6 450 0.0 514
Msa0990480 MtrunA17_Chr7g0273721 56.347 449 189 5 5 449 7 452 0.0 514
Msa0990480 MtrunA17_Chr7g0273761 55.748 461 195 6 5 461 378 833 8.04e-180 524
Msa0990480 MtrunA17_Chr7g0273761 51.623 308 144 4 146 450 32 337 1.87e-97 311
Msa0990480 MtrunA17_Chr7g0273731 56.364 440 184 5 5 440 89 524 8.58e-179 511
Msa0990480 MtrunA17_Chr1g0191081 57.403 439 182 5 4 440 13 448 1.39e-178 507
Msa0990480 MtrunA17_Chr6g0471371 96.667 150 5 0 1 150 1 150 1.89e-100 298
Msa0990480 MtrunA17_Chr1g0165741 85.034 147 22 0 1 147 1 147 3.81e-86 260
Msa0990480 MtrunA17_Chr3g0132001 33.179 431 269 10 7 432 12 428 7.45e-77 246
Msa0990480 MtrunA17_Chr8g0386141 34.772 394 241 10 1 388 1 384 7.23e-74 239
Msa0990480 MtrunA17_Chr6g0471971 47.881 236 96 5 162 393 2 214 2.81e-73 230
Msa0990480 MtrunA17_Chr7g0224391 35.065 385 236 9 12 390 19 395 1.06e-72 236
Msa0990480 MtrunA17_Chr6g0471891 59.474 190 52 1 230 419 1 165 3.52e-72 228
Msa0990480 MtrunA17_Chr8g0353421 78.125 128 28 0 1 128 1 128 7.26e-69 215
Msa0990480 MtrunA17_Chr7g0273741 64.384 146 52 0 2 147 3 148 1.16e-65 207
Msa0990480 MtrunA17_Chr3g0098961 60.274 146 58 0 2 147 6 151 1.02e-58 191
Msa0990480 MtrunA17_Chr3g0141851 33.592 387 231 12 17 390 20 393 5.00e-55 190
Msa0990480 MtrunA17_Chr1g0165731 72.897 107 29 0 162 268 2 108 1.20e-54 177
Msa0990480 MtrunA17_Chr1g0165721 76.068 117 28 0 345 461 1 117 2.84e-54 177
Msa0990480 MtrunA17_Chr7g0273701 52.410 166 76 3 285 449 1 164 1.92e-51 172
Msa0990480 MtrunA17_Chr2g0306321 31.620 389 250 10 17 390 26 413 9.44e-51 179
Msa0990480 MtrunA17_Chr2g0334001 29.310 406 263 10 5 395 1 397 5.79e-49 173
Msa0990480 MtrunA17_Chr4g0001861 30.971 381 221 10 41 395 34 398 8.77e-49 172
Msa0990480 MtrunA17_Chr4g0027071 28.093 388 259 8 16 387 19 402 3.49e-47 169
Msa0990480 MtrunA17_Chr8g0371821 29.310 406 248 10 13 397 7 394 6.78e-47 167
Msa0990480 MtrunA17_Chr3g0113821 29.620 395 260 10 9 390 5 394 1.25e-43 159
Msa0990480 MtrunA17_Chr3g0087401 27.470 415 247 12 17 392 10 409 1.58e-42 156
Msa0990480 MtrunA17_Chr7g0252731 28.645 391 243 11 8 388 16 380 6.85e-40 148
Msa0990480 MtrunA17_Chr7g0253531 28.087 413 253 14 16 390 9 415 5.25e-39 147
Msa0990480 MtrunA17_Chr2g0283361 30.334 389 255 12 9 387 2 384 8.50e-39 145
Msa0990480 MtrunA17_Chr7g0253501 28.810 420 241 15 16 390 9 415 1.75e-38 145
Msa0990480 MtrunA17_Chr7g0270771 30.034 293 167 6 5 286 1 266 2.10e-38 140
Msa0990480 MtrunA17_Chr3g0106691 27.665 394 259 12 9 382 56 443 3.22e-36 140
Msa0990480 MtrunA17_Chr6g0470591 26.406 409 270 13 3 387 5 406 3.65e-36 139
Msa0990480 MtrunA17_Chr4g0072041 27.114 402 258 11 17 390 22 416 1.41e-34 134
Msa0990480 MtrunA17_Chr3g0106721 28.645 391 247 13 7 378 8 385 9.07e-34 132
Msa0990480 MtrunA17_Chr4g0054081 27.577 388 243 11 35 392 34 413 1.31e-32 129
Msa0990480 MtrunA17_Chr7g0235531 26.933 401 256 13 8 384 3 390 5.36e-32 127
Msa0990480 MtrunA17_Chr7g0253541 26.799 403 254 14 17 385 12 407 5.99e-31 124
Msa0990480 MtrunA17_Chr3g0106661 28.101 395 258 11 16 387 17 408 9.99e-31 124
Msa0990480 MtrunA17_Chr2g0311401 26.786 280 165 7 142 395 2 267 2.21e-27 111
Msa0990480 MtrunA17_Chr3g0106711 31.915 235 133 6 7 216 8 240 1.49e-26 107
Msa0990480 MtrunA17_Chr3g0106761 27.273 341 214 12 69 387 19 347 1.41e-24 105
Msa0990480 MtrunA17_Chr5g0442701 24.645 422 264 15 7 389 8 414 1.18e-23 103
Msa0990480 MtrunA17_Chr7g0273691 50.000 88 42 1 165 250 1 88 1.51e-23 94.7
Msa0990480 MtrunA17_Chr3g0106741 27.795 331 207 11 78 387 59 378 1.54e-23 102
Msa0990480 MtrunA17_Chr5g0442691 24.105 419 270 14 7 389 31 437 1.19e-22 100
Msa0990480 MtrunA17_Chr4g0004691 30.952 168 110 2 17 184 12 173 1.68e-22 94.7
Msa0990480 MtrunA17_Chr4g0053061 25.682 440 265 18 24 432 59 467 3.44e-22 99.0
Msa0990480 MtrunA17_Chr1g0199561 23.317 416 260 16 15 396 9 399 4.34e-22 98.6
Msa0990480 MtrunA17_Chr4g0010121 25.170 441 262 19 23 432 70 473 6.68e-22 98.2
Msa0990480 MtrunA17_Chr7g0273681 73.469 49 13 0 91 139 1 49 8.21e-22 88.2
Msa0990480 MtrunA17_Chr8g0374911 25.455 440 266 18 24 432 52 460 8.63e-22 97.8
Msa0990480 MtrunA17_Chr5g0438701 24.171 422 250 17 15 397 9 399 3.47e-21 95.5
Msa0990480 MtrunA17_Chr3g0134041 25.114 438 267 18 36 445 44 448 5.06e-21 95.1
Msa0990480 MtrunA17_Chr4g0010311 25.404 433 273 20 23 432 25 430 5.65e-21 95.1
Msa0990480 MtrunA17_Chr7g0224131 25.175 429 276 17 23 432 25 427 8.16e-21 94.7
Msa0990480 MtrunA17_Chr8g0354371 25.587 383 245 14 23 387 31 391 3.35e-20 92.8
Msa0990480 MtrunA17_Chr3g0134061 25.255 392 253 17 36 398 42 422 6.40e-20 92.0
Msa0990480 MtrunA17_Chr3g0095731 26.455 378 231 15 48 389 47 413 7.55e-20 92.0
Msa0990480 MtrunA17_Chr4g0010361 24.419 430 278 18 23 430 25 429 1.02e-19 91.3
Msa0990480 MtrunA17_Chr4g0010331 24.041 391 263 13 23 397 25 397 1.14e-19 91.3
Msa0990480 MtrunA17_Chr3g0134121 26.904 394 256 16 24 397 31 412 1.29e-19 91.3
Msa0990480 MtrunA17_Chr8g0374641 25.806 434 269 19 23 432 30 434 1.43e-19 90.9
Msa0990480 MtrunA17_Chr3g0134091 27.000 400 249 15 23 397 30 411 1.73e-19 90.9
Msa0990480 MtrunA17_Chr4g0010381 25.231 432 274 17 23 432 25 429 2.84e-19 90.1
Msa0990480 MtrunA17_Chr3g0095721 23.284 408 269 13 64 441 72 465 5.31e-19 89.4
Msa0990480 MtrunA17_Chr3g0134071 26.593 361 227 16 64 398 70 418 6.65e-19 89.0
Msa0990480 MtrunA17_Chr4g0053091 22.685 432 273 14 23 432 32 424 7.07e-19 88.6
Msa0990480 MtrunA17_Chr3g0123061 22.922 397 247 15 15 390 11 369 7.54e-19 88.6
Msa0990480 MtrunA17_Chr5g0442721 25.203 369 220 14 61 389 64 416 8.18e-19 88.6
Msa0990480 MtrunA17_Chr4g0053081 22.633 433 282 14 23 432 33 435 1.21e-18 88.2
Msa0990480 MtrunA17_Chr8g0376901 22.807 399 259 12 15 388 9 383 1.49e-18 87.8
Msa0990480 MtrunA17_Chr4g0053111 23.940 401 263 15 23 398 28 411 1.71e-18 87.8
Msa0990480 MtrunA17_Chr5g0408911 26.044 407 245 17 22 397 33 414 5.63e-18 86.3
Msa0990480 MtrunA17_Chr8g0359251 25.000 432 272 18 23 432 30 431 1.75e-17 84.3
Msa0990480 MtrunA17_Chr8g0376891 21.930 456 310 16 15 450 9 438 1.77e-17 84.7
Msa0990480 MtrunA17_Chr8g0376911 23.733 434 246 20 15 412 9 393 2.96e-16 80.9
Msa0990480 MtrunA17_Chr3g0087221 25.000 444 268 20 23 432 25 437 6.69e-16 79.7
Msa0990480 MtrunA17_Chr2g0311411 34.459 148 91 4 5 152 1 142 1.11e-15 74.3
Msa0990480 MtrunA17_Chr7g0252771 26.291 213 137 6 187 388 2 205 3.33e-15 75.5
Msa0990480 MtrunA17_Chr6g0471981 49.315 73 29 1 100 172 1 65 5.84e-15 69.3
Msa0990480 MtrunA17_Chr7g0252761 30.323 155 104 3 8 161 15 166 7.66e-15 72.4
Msa0990480 MtrunA17_Chr4g0010351 25.294 340 224 11 23 347 25 349 1.20e-14 75.5
Msa0990480 MtrunA17_Chr3g0097841 29.114 158 93 4 251 392 48 202 1.98e-14 73.2
Msa0990480 MtrunA17_Chr5g0414431 64.706 51 13 1 55 105 6 51 3.43e-14 67.0
Msa0990480 MtrunA17_Chr3g0106631 28.671 143 91 5 147 282 2 140 1.14e-12 65.9
Msa0990480 MtrunA17_Chr2g0278481 22.573 412 249 19 16 389 24 403 2.43e-12 68.6
Msa0990480 MtrunA17_Chr7g0273671 60.976 41 16 0 2 42 3 43 7.17e-12 60.1
Msa0990480 MtrunA17_Chr7g0224121 30.496 141 86 6 51 184 46 181 1.16e-11 63.9
Msa0990480 MtrunA17_Chr3g0097851 29.897 97 67 1 251 347 19 114 2.98e-11 60.5
Msa0990480 MtrunA17_Chr4g0004701 26.531 196 117 7 254 430 45 232 3.37e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0990480 AT5G17540.1 54.409 465 204 6 1 461 1 461 3.49e-175 499
Msa0990480 AT3G03480.1 53.273 443 194 8 5 441 15 450 1.64e-157 454
Msa0990480 AT5G41040.2 35.787 394 233 11 7 390 15 398 1.50e-76 246
Msa0990480 AT5G41040.1 35.787 394 233 11 7 390 31 414 1.62e-76 246
Msa0990480 AT5G63560.1 34.005 397 242 10 1 390 1 384 5.05e-74 239
Msa0990480 AT3G48720.1 32.828 396 252 10 1 390 1 388 1.96e-70 230
Msa0990480 AT1G27620.1 29.148 446 285 12 10 445 10 434 2.32e-53 185
Msa0990480 AT1G03390.1 32.316 393 242 12 16 390 24 410 1.57e-49 176
Msa0990480 AT3G62160.1 30.882 408 224 12 5 388 1 374 8.44e-48 170
Msa0990480 AT2G40230.1 32.161 398 242 13 9 390 5 390 4.62e-46 166
Msa0990480 AT5G48930.1 28.788 396 262 9 8 390 2 390 4.96e-46 166
Msa0990480 AT1G28680.1 28.684 380 260 10 16 387 11 387 1.09e-45 165
Msa0990480 AT1G65450.1 31.407 398 248 11 7 389 16 403 1.80e-44 162
Msa0990480 AT5G57840.1 28.434 415 258 12 8 397 2 402 2.72e-44 161
Msa0990480 AT1G28680.2 29.446 343 232 9 16 351 11 350 4.92e-42 154
Msa0990480 AT2G19070.1 28.109 402 255 11 17 390 12 407 9.17e-40 149
Msa0990480 AT3G47170.1 26.458 480 284 17 7 440 10 466 4.23e-37 142
Msa0990480 AT5G07080.1 29.048 420 227 13 9 387 14 403 5.84e-36 138
Msa0990480 AT2G25150.1 27.970 404 238 13 15 387 19 400 2.00e-31 126
Msa0990480 AT2G23510.1 27.427 412 256 16 1 387 5 398 2.82e-30 122
Msa0990480 AT1G32910.1 23.881 402 271 14 62 441 63 451 4.69e-23 102
Msa0990480 AT1G78990.1 23.988 346 235 8 62 390 65 399 5.40e-23 101
Msa0990480 AT3G50280.1 25.284 352 231 12 64 395 59 398 4.71e-22 98.6
Msa0990480 AT1G31490.1 24.324 407 262 14 6 389 3 386 6.52e-22 98.2
Msa0990480 AT5G38130.1 25.373 402 250 15 23 401 48 422 5.85e-21 95.5
Msa0990480 AT5G42830.1 25.743 404 255 11 19 397 27 410 1.25e-20 94.4
Msa0990480 AT3G26040.1 24.000 400 257 13 15 391 9 384 2.41e-20 93.6
Msa0990480 AT5G07860.1 25.253 396 250 11 64 438 72 442 3.03e-20 93.6
Msa0990480 AT1G24420.2 25.829 422 267 17 15 418 11 404 1.71e-19 90.9
Msa0990480 AT1G24420.1 25.829 422 267 17 15 418 11 404 1.71e-19 90.9
Msa0990480 AT1G65450.3 29.167 240 150 7 162 388 6 238 3.63e-19 87.8
Msa0990480 AT5G16410.1 22.928 362 233 12 62 395 89 432 1.24e-18 88.6
Msa0990480 AT4G15390.1 22.573 412 270 15 3 388 2 390 2.87e-18 87.4
Msa0990480 AT4G15390.2 22.573 412 270 15 3 388 2 390 2.87e-18 87.4
Msa0990480 AT5G23940.1 25.339 442 268 16 41 440 28 449 4.13e-18 87.0
Msa0990480 AT5G07870.1 26.171 363 238 12 64 401 72 429 1.74e-17 85.1
Msa0990480 AT3G50270.1 24.500 400 258 15 23 397 30 410 2.48e-17 84.3
Msa0990480 AT5G67160.1 23.678 435 304 15 16 437 7 426 2.87e-17 84.3
Msa0990480 AT5G07850.1 24.044 366 239 14 64 398 70 427 2.00e-15 78.6
Msa0990480 AT1G24430.1 21.569 459 280 16 7 432 3 414 3.27e-15 77.8
Msa0990480 AT3G50300.1 24.930 357 235 14 64 397 59 405 1.27e-14 76.3
Msa0990480 AT3G30280.1 23.762 404 266 18 7 388 4 387 2.01e-13 72.4
Msa0990480 AT1G65450.2 35.374 147 90 4 7 151 16 159 5.46e-13 67.4
Msa0990480 AT3G23840.1 26.168 214 120 7 73 270 72 263 5.17e-11 64.7

Find 85 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCAGGCTTTCTTCTT+TGG 0.159855 6_4:-51896303 Msa0990480:CDS
TGATGTGATGATTTCAAAAT+TGG 0.194433 6_4:+51896221 None:intergenic
GGGTCTTTGCCTTCCATAAT+TGG 0.207524 6_4:+51900383 None:intergenic
CACTCCATTGTTGCTTATTC+AGG 0.213746 6_4:-51900123 Msa0990480:intron
GCGTTCAATGGCAGATTTAA+TGG 0.219804 6_4:-51895959 Msa0990480:CDS
CAACATTAACTCGCCTACTA+TGG 0.253148 6_4:-51895668 Msa0990480:CDS
TTTGATGGACTTATCAATTC+AGG 0.276801 6_4:+51900500 None:intergenic
TCATCCTCCATTTCCATGCT+TGG 0.295990 6_4:-51900189 Msa0990480:CDS
GGATTTAGAGATGTTGATTT+TGG 0.298021 6_4:-51895871 Msa0990480:CDS
TTACAACTATAATCCAATTA+TGG 0.298751 6_4:-51900396 Msa0990480:CDS
TTTGCTTTGTTGTCAGGTTC+TGG 0.302024 6_4:+51896348 None:intergenic
GATGTTACTCTTAAACAATT+TGG 0.305499 6_4:-51900221 Msa0990480:CDS
CATCCTCCATTTCCATGCTT+GGG 0.309107 6_4:-51900188 Msa0990480:CDS
TCACTTTGAATAACAGAGAT+TGG 0.319779 6_4:+51900534 None:intergenic
AATGTGTTTGCTTTGTTGTC+AGG 0.355303 6_4:+51896342 None:intergenic
GAGCTTATCTATGATGTTCC+TGG 0.364126 6_4:-51900164 Msa0990480:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 6_4:-51895761 Msa0990480:CDS
ACTATGGGTGATAGAAAATC+TGG 0.400921 6_4:-51895652 Msa0990480:CDS
AGCTCACCCAAGCATGGAAA+TGG 0.405012 6_4:+51900182 None:intergenic
AAACTTATGGTTGATTGTAC+TGG 0.411896 6_4:-51900275 Msa0990480:CDS
AGGTCCTGGCAGGAAACTTA+TGG 0.416255 6_4:-51900288 Msa0990480:CDS
GGCAGATTTAATGGTAATCA+AGG 0.419104 6_4:-51895950 Msa0990480:CDS
CTGTCTGATGTTACACGTGC+TGG 0.421789 6_4:-51895892 Msa0990480:CDS
CTTGTACCAAATGGTTACTA+TGG 0.428082 6_4:-51896099 Msa0990480:CDS
ATCCATTGGCAGGTAGGTTG+AGG 0.439249 6_4:-51900313 Msa0990480:CDS
CACTTTGAATAACAGAGATT+GGG 0.439909 6_4:+51900535 None:intergenic
TGCTTTAGCAGAAATATCTC+AGG 0.441961 6_4:-51896466 Msa0990480:CDS
AATCCAGTGCATACGTCAAC+GGG 0.450348 6_4:+51896022 None:intergenic
AAATGAAACCTCTACATTTG+AGG 0.462956 6_4:+51896547 None:intergenic
GTTAACCTACTTGTACCAAA+TGG 0.467873 6_4:-51896108 Msa0990480:CDS
CATGAAAGCGTAAAGATTGT+TGG 0.467969 6_4:+51900435 None:intergenic
CACCACACGGGTGAGATAGA+AGG 0.468435 6_4:+51896432 None:intergenic
GGAGAGGTTGGTTAAAGAGT+TGG 0.469038 6_4:-51895707 Msa0990480:CDS
CTGATCCATCAGTCATTGTA+TGG 0.471310 6_4:+51896508 None:intergenic
CATTGAACGCATGTACTCTT+CGG 0.471418 6_4:+51895972 None:intergenic
CTTAGATGACATGGTCCACC+AGG 0.473147 6_4:-51896316 Msa0990480:CDS
CTGGTGGACCATGTCATCTA+AGG 0.473362 6_4:+51896317 None:intergenic
CCTACAGTTGTAATTGCAAC+GGG 0.475717 6_4:+51896060 None:intergenic
GCGTTACCATAGTAACCATT+TGG 0.486089 6_4:+51896093 None:intergenic
TATGGAGGATTAGCTAGAGC+AGG 0.500867 6_4:-51895832 Msa0990480:CDS
TCCATTGGCAGGTAGGTTGA+GGG 0.500938 6_4:-51900312 Msa0990480:CDS
AACCTCTCCATGACTTGAGT+TGG 0.504600 6_4:+51895721 None:intergenic
AACATTAACTCGCCTACTAT+GGG 0.506408 6_4:-51895667 Msa0990480:CDS
TCCTACAGTTGTAATTGCAA+CGG 0.510617 6_4:+51896059 None:intergenic
AACTCAAGTCATGGAGAGGT+TGG 0.514526 6_4:-51895719 Msa0990480:CDS
AGAACGAATTGCGGCTACCT+CGG 0.515692 6_4:+51896275 None:intergenic
GCAGGAGATGGTACTAATCC+TGG 0.517099 6_4:-51895814 Msa0990480:CDS
CGATGAGTACACGTCACTCT+TGG 0.519362 6_4:+51896381 None:intergenic
GGTTGAGGGAAGGTCCTGGC+AGG 0.519862 6_4:-51900298 Msa0990480:CDS
TTTATTATCCATTGGCAGGT+AGG 0.523223 6_4:-51900319 Msa0990480:CDS
CGAATTGCGGCTACCTCGGT+TGG 0.525664 6_4:+51896279 None:intergenic
GGTAGGTTGAGGGAAGGTCC+TGG 0.530522 6_4:-51900302 Msa0990480:CDS
CGAAGAGTACATGCGTTCAA+TGG 0.533690 6_4:-51895971 Msa0990480:CDS
TAGTTGTAAAATTGTATCAA+AGG 0.541244 6_4:+51900410 None:intergenic
AAACCCGTTGACGTATGCAC+TGG 0.551116 6_4:-51896025 Msa0990480:CDS
TAGAATTTCTCTGCACCACA+CGG 0.551792 6_4:+51896419 None:intergenic
TCCCTCAACCTACCTGCCAA+TGG 0.553662 6_4:+51900311 None:intergenic
CTCTGTTATTCAAAGTGAAG+AGG 0.555419 6_4:-51900529 Msa0990480:CDS
GCAGAGAAATTCTAAGCGCA+AGG 0.556633 6_4:-51896410 Msa0990480:CDS
TTCAACCATACAATGACTGA+TGG 0.556932 6_4:-51896513 Msa0990480:CDS
AACTATAATCCAATTATGGA+AGG 0.560081 6_4:-51900392 Msa0990480:CDS
CATACAATGACTGATGGATC+AGG 0.560751 6_4:-51896507 Msa0990480:CDS
CCCGTTGCAATTACAACTGT+AGG 0.563191 6_4:-51896060 Msa0990480:CDS
AAATCCAGTGCATACGTCAA+CGG 0.566201 6_4:+51896021 None:intergenic
TTGGACCAAAGAAGAAAGCC+TGG 0.574349 6_4:+51896298 None:intergenic
TTCCAACTCAAGTCATGGAG+AGG 0.575799 6_4:-51895723 Msa0990480:CDS
TAGATAAGCTCACCCAAGCA+TGG 0.578422 6_4:+51900176 None:intergenic
TCACCCAAGCATGGAAATGG+AGG 0.596066 6_4:+51900185 None:intergenic
AGTACCTGAATAAGCAACAA+TGG 0.598590 6_4:+51900119 None:intergenic
AGTAACCATTTGGTACAAGT+AGG 0.600048 6_4:+51896103 None:intergenic
GCATTCGCTGTAGTAAAATG+AGG 0.605286 6_4:+51895922 None:intergenic
GCAGATTTAATGGTAATCAA+GGG 0.613876 6_4:-51895949 Msa0990480:CDS
TCAACCATAAGTTTCCTGCC+AGG 0.615495 6_4:+51900284 None:intergenic
GGATTAGCTAGAGCAGGAGA+TGG 0.616065 6_4:-51895826 Msa0990480:CDS
ATGGTTGATTGTACTGGAGA+AGG 0.624573 6_4:-51900269 Msa0990480:CDS
AGAATTTCTCTGCACCACAC+GGG 0.634985 6_4:+51896420 None:intergenic
CAGAGAAATTCTAAGCGCAA+GGG 0.649135 6_4:-51896409 Msa0990480:CDS
TGGAAGTAGAGAACGAATTG+CGG 0.652589 6_4:+51896266 None:intergenic
TTGGCAGGTAGGTTGAGGGA+AGG 0.661218 6_4:-51900308 Msa0990480:CDS
GTAACACGCCTCAAATGTAG+AGG 0.664855 6_4:-51896555 Msa0990480:CDS
TTTCTTCTTTGGTCCAACCG+AGG 0.666330 6_4:-51896292 Msa0990480:CDS
GCTTTAGCAGAAATATCTCA+GGG 0.672367 6_4:-51896465 Msa0990480:CDS
TTTAGCACATCTGAAGAACC+AGG 0.677737 6_4:+51900146 None:intergenic
GACCAAAGAAGAAAGCCTGG+TGG 0.712333 6_4:+51896301 None:intergenic
AACCTTCTATCTCACCCGTG+TGG 0.728430 6_4:-51896434 Msa0990480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTTTTATTTAA+GGG + chr6_4:51896205-51896224 None:intergenic 0.0%
!!! ATTTTTTTTATTTTTATTTA+AGG + chr6_4:51896206-51896225 None:intergenic 0.0%
!! GATACTAAAAATAAATTTAA+GGG + chr6_4:51896174-51896193 None:intergenic 10.0%
!!! AGAAAATAAATTAAGTTTTT+GGG + chr6_4:51896353-51896372 None:intergenic 10.0%
!!! AAGAAAATAAATTAAGTTTT+TGG + chr6_4:51896354-51896373 None:intergenic 10.0%
!!! TTAATTTCTTTTCTTTTTTT+GGG + chr6_4:51897287-51897306 None:intergenic 10.0%
!! ATAAACTTAAAATACTAAAA+CGG - chr6_4:51897462-51897481 Msa0990480:intron 10.0%
!! CGATACTAAAAATAAATTTA+AGG + chr6_4:51896175-51896194 None:intergenic 15.0%
!! AATAAAAAAAATGTTAAAGG+CGG - chr6_4:51896305-51896324 Msa0990480:CDS 15.0%
!!! TTGAATTGTGTTTTTTTATT+TGG + chr6_4:51897035-51897054 None:intergenic 15.0%
!!! CTTAATTTCTTTTCTTTTTT+TGG + chr6_4:51897288-51897307 None:intergenic 15.0%
!! AAAATTATGAAATTTGATGA+AGG - chr6_4:51897338-51897357 Msa0990480:intron 15.0%
!!! CATTTTTGAATTAAAACTAA+CGG - chr6_4:51897417-51897436 Msa0990480:intron 15.0%
!! TTTGAAAATTCATAAGTAAT+CGG - chr6_4:51897614-51897633 Msa0990480:intron 15.0%
!! CTTAATTTCATATAACAATT+TGG + chr6_4:51897678-51897697 None:intergenic 15.0%
!! TCAAATAAATGTAAAATCTA+AGG - chr6_4:51897830-51897849 Msa0990480:intron 15.0%
!! CAAATAAATGTAAAATCTAA+GGG - chr6_4:51897831-51897850 Msa0990480:intron 15.0%
!! AATTTCTTAAATCCAATATA+AGG + chr6_4:51899302-51899321 None:intergenic 15.0%
!!! ATTTTTAAAAGGTATATAAC+TGG + chr6_4:51900389-51900408 None:intergenic 15.0%
!! TAGTTGTAAAATTGTATCAA+AGG + chr6_4:51895762-51895781 None:intergenic 20.0%
!! TTACAACTATAATCCAATTA+TGG - chr6_4:51895773-51895792 Msa0990480:CDS 20.0%
!!! TTCTTATGATCTTTTTATCT+TGG - chr6_4:51896130-51896149 Msa0990480:CDS 20.0%
!!! ATTTATTTTTAGTATCGCTT+CGG - chr6_4:51896178-51896197 Msa0990480:CDS 20.0%
!!! TTAATTTTCGTTACAGTTTT+TGG - chr6_4:51896245-51896264 Msa0990480:CDS 20.0%
!!! CGTTTTTTTATTGAACTTAA+CGG + chr6_4:51896277-51896296 None:intergenic 20.0%
!! AAGTTCAATAAAAAAACGTT+AGG - chr6_4:51896279-51896298 Msa0990480:CDS 20.0%
!!! AGAAATTGTTTTTCCAAAAA+CGG + chr6_4:51896433-51896452 None:intergenic 20.0%
!!! TTCTTTCTATTTTCCATAAA+TGG + chr6_4:51896629-51896648 None:intergenic 20.0%
!! TTAATGGAGAAATTGTTTAT+GGG + chr6_4:51896889-51896908 None:intergenic 20.0%
!! TTTAATGGAGAAATTGTTTA+TGG + chr6_4:51896890-51896909 None:intergenic 20.0%
!!! ATTTCTAAAAGTACAAGATT+TGG - chr6_4:51897088-51897107 Msa0990480:intron 20.0%
!!! AACAAAAACAACTTTTTCTT+TGG + chr6_4:51897259-51897278 None:intergenic 20.0%
!! TGATACTAAGTAATAACTTA+AGG - chr6_4:51897511-51897530 Msa0990480:intron 20.0%
!! GATACTAAGTAATAACTTAA+GGG - chr6_4:51897512-51897531 Msa0990480:intron 20.0%
!! ACTATATATCTAAAGATTGA+AGG + chr6_4:51897556-51897575 None:intergenic 20.0%
!! TTAAGTTAAAAGACTAAAGA+TGG - chr6_4:51897920-51897939 Msa0990480:intron 20.0%
!! TGATTATAGTGAAAATCATT+TGG + chr6_4:51898347-51898366 None:intergenic 20.0%
!!! TATTTAATTTGACAAAGCAA+GGG - chr6_4:51898591-51898610 Msa0990480:intron 20.0%
!!! CTCTCAGTATTTTATATATA+AGG + chr6_4:51898666-51898685 None:intergenic 20.0%
!! TAACTTACTACTTTATTACT+TGG + chr6_4:51899056-51899075 None:intergenic 20.0%
!!! AAATCATCACATCATATTTT+TGG - chr6_4:51899957-51899976 Msa0990480:intron 20.0%
!!! ATACCTTTTAAAAATGCTAA+AGG - chr6_4:51900394-51900413 Msa0990480:CDS 20.0%
! AACTATAATCCAATTATGGA+AGG - chr6_4:51895777-51895796 Msa0990480:CDS 25.0%
!! CTTTTCTAATAACATCAACA+GGG + chr6_4:51895809-51895828 None:intergenic 25.0%
! GATGTTACTCTTAAACAATT+TGG - chr6_4:51895948-51895967 Msa0990480:CDS 25.0%
!!! TCTTGGTTTAATTGCTATTT+TGG - chr6_4:51896147-51896166 Msa0990480:CDS 25.0%
!! TTTTATTGAACTTAACGGAA+GGG + chr6_4:51896272-51896291 None:intergenic 25.0%
!! TTTTTATTGAACTTAACGGA+AGG + chr6_4:51896273-51896292 None:intergenic 25.0%
!! TTTTGGATAAAGATTGATGA+AGG + chr6_4:51896519-51896538 None:intergenic 25.0%
!! TGATGTTCTTTCTCTTTTAT+GGG + chr6_4:51896542-51896561 None:intergenic 25.0%
!! TTGATGTTCTTTCTCTTTTA+TGG + chr6_4:51896543-51896562 None:intergenic 25.0%
!! TATTTTCCATAAATGGATGA+AGG + chr6_4:51896622-51896641 None:intergenic 25.0%
! TGTTGCATGAAAAGATTTAT+GGG + chr6_4:51896698-51896717 None:intergenic 25.0%
! TTGTTGCATGAAAAGATTTA+TGG + chr6_4:51896699-51896718 None:intergenic 25.0%
!! AATTATGGGTTTCCTTTTAT+GGG + chr6_4:51896815-51896834 None:intergenic 25.0%
!! AAATTATGGGTTTCCTTTTA+TGG + chr6_4:51896816-51896835 None:intergenic 25.0%
!!! GAAAGGGATGTTTTTTTTAA+TGG + chr6_4:51896905-51896924 None:intergenic 25.0%
!! GCTTATTGTTTGAAATGAAA+GGG + chr6_4:51896921-51896940 None:intergenic 25.0%
!! TTTGAAGATTTTGCTTGATT+TGG + chr6_4:51896943-51896962 None:intergenic 25.0%
! TTCTTCATATTTACTAACAG+TGG - chr6_4:51896986-51897005 Msa0990480:intron 25.0%
! TCTTCATATTTACTAACAGT+GGG - chr6_4:51896987-51897006 Msa0990480:intron 25.0%
! AAAACACAATTCAAAACACA+AGG - chr6_4:51897041-51897060 Msa0990480:intron 25.0%
! AAACACAATTCAAAACACAA+GGG - chr6_4:51897042-51897061 Msa0990480:intron 25.0%
! TTGAATTAAAACTAACGGAA+AGG - chr6_4:51897422-51897441 Msa0990480:intron 25.0%
!!! AACGGACTTTTTTTTACTTA+AGG - chr6_4:51897480-51897499 Msa0990480:intron 25.0%
!!! ACGGACTTTTTTTTACTTAA+GGG - chr6_4:51897481-51897500 Msa0990480:intron 25.0%
! GTTATTACTTAGTATCACTT+TGG + chr6_4:51897508-51897527 None:intergenic 25.0%
!! AGTTTTTACTCAGGATATAT+AGG + chr6_4:51897712-51897731 None:intergenic 25.0%
!! AAGATGGAATTTTGCAAATT+TGG - chr6_4:51897936-51897955 Msa0990480:intron 25.0%
!! TGCGTTAAAATTGTTATTGT+GGG + chr6_4:51897966-51897985 None:intergenic 25.0%
! AAGATTACAAGTTCTTCTTA+GGG - chr6_4:51898110-51898129 Msa0990480:intron 25.0%
! TTTCTTCTGTGATTAAAGAA+TGG + chr6_4:51898413-51898432 None:intergenic 25.0%
!!! CTATTTAATTTGACAAAGCA+AGG - chr6_4:51898590-51898609 Msa0990480:intron 25.0%
! TCTTTAATTAAGCTTCTCAA+GGG + chr6_4:51898724-51898743 None:intergenic 25.0%
! GAAACAAATAAAGGAATTCA+AGG + chr6_4:51898839-51898858 None:intergenic 25.0%
! CTTTATTACTTGGTACAATT+TGG + chr6_4:51899046-51899065 None:intergenic 25.0%
! TTCTTAAATCCAATATAAGG+CGG + chr6_4:51899299-51899318 None:intergenic 25.0%
! AATTAGAACATAACTCGTTA+AGG - chr6_4:51899318-51899337 Msa0990480:intron 25.0%
! AATAATTAATGAGCGAATGA+AGG + chr6_4:51899561-51899580 None:intergenic 25.0%
! TGATGTGATGATTTCAAAAT+TGG + chr6_4:51899951-51899970 None:intergenic 25.0%
! ATATAACTGGTAAAAATACC+AGG + chr6_4:51900376-51900395 None:intergenic 25.0%
!! TCTCCTTTAGCATTTTTAAA+AGG + chr6_4:51900400-51900419 None:intergenic 25.0%
!!! TTTTAAAAATGCTAAAGGAG+AGG - chr6_4:51900399-51900418 Msa0990480:CDS 25.0%
CACTTTGAATAACAGAGATT+GGG + chr6_4:51895637-51895656 None:intergenic 30.0%
TCACTTTGAATAACAGAGAT+TGG + chr6_4:51895638-51895657 None:intergenic 30.0%
!! TTTGATGGACTTATCAATTC+AGG + chr6_4:51895672-51895691 None:intergenic 30.0%
!!! AGTTTTATTTCATGAGGAGT+GGG + chr6_4:51895696-51895715 None:intergenic 30.0%
!!! TAGTTTTATTTCATGAGGAG+TGG + chr6_4:51895697-51895716 None:intergenic 30.0%
!!! GAGAGTAGTTTTATTTCATG+AGG + chr6_4:51895702-51895721 None:intergenic 30.0%
! GCTTTTCTAATAACATCAAC+AGG + chr6_4:51895810-51895829 None:intergenic 30.0%
!! GCTTGTGTTTTATTATCCAT+TGG - chr6_4:51895842-51895861 Msa0990480:CDS 30.0%
AAACTTATGGTTGATTGTAC+TGG - chr6_4:51895894-51895913 Msa0990480:CDS 30.0%
GAGAAGATGAAGAATTTAAG+TGG + chr6_4:51896385-51896404 None:intergenic 30.0%
AAGAAGATGAAGACTTTAAG+TGG + chr6_4:51896407-51896426 None:intergenic 30.0%
! TGATGATGATGATGATATGA+AGG + chr6_4:51896493-51896512 None:intergenic 30.0%
! TCTTTCTCTTTTATGGGTTT+TGG + chr6_4:51896536-51896555 None:intergenic 30.0%
! GTTATTTCATGAGAGTGAAA+AGG + chr6_4:51896793-51896812 None:intergenic 30.0%
CTCATGAAATAACCCATAAA+AGG - chr6_4:51896800-51896819 Msa0990480:intron 30.0%
GTGGTTGTTGCATAAATTAT+GGG + chr6_4:51896829-51896848 None:intergenic 30.0%
TGTGGTTGTTGCATAAATTA+TGG + chr6_4:51896830-51896849 None:intergenic 30.0%
! GGCTTATTGTTTGAAATGAA+AGG + chr6_4:51896922-51896941 None:intergenic 30.0%
AAATTTGATGAAGGTGAATG+AGG - chr6_4:51897347-51897366 Msa0990480:intron 30.0%
! AGTTTATCCCATTCACATTT+TGG + chr6_4:51897449-51897468 None:intergenic 30.0%
! TTGCTTCTTTCTAGAAAACA+CGG - chr6_4:51897771-51897790 Msa0990480:intron 30.0%
! CTGCGTTAAAATTGTTATTG+TGG + chr6_4:51897967-51897986 None:intergenic 30.0%
! CATGAATCAAGTTTTCTTAC+CGG - chr6_4:51898060-51898079 Msa0990480:intron 30.0%
CAAGATTACAAGTTCTTCTT+AGG - chr6_4:51898109-51898128 Msa0990480:intron 30.0%
! AAAATCATTTGGAAGTGCAA+GGG + chr6_4:51898336-51898355 None:intergenic 30.0%
GTCTTTAATTAAGCTTCTCA+AGG + chr6_4:51898725-51898744 None:intergenic 30.0%
TCAAGTGCAGAAACAAATAA+AGG + chr6_4:51898848-51898867 None:intergenic 30.0%
!! GATGGTGATTTTAGTGAAAT+TGG - chr6_4:51899012-51899031 Msa0990480:intron 30.0%
TCTTTCAACTCAGTAATTAG+TGG - chr6_4:51899095-51899114 Msa0990480:intron 30.0%
! AAAGAATTTGAAGTTGTTGC+AGG - chr6_4:51899145-51899164 Msa0990480:intron 30.0%
! AAGAATTTGAAGTTGTTGCA+GGG - chr6_4:51899146-51899165 Msa0990480:intron 30.0%
TAATTTCCTTCAAAGACGAA+GGG + chr6_4:51899251-51899270 None:intergenic 30.0%
TTAATTTCCTTCAAAGACGA+AGG + chr6_4:51899252-51899271 None:intergenic 30.0%
ATTTATAACCCGCCTTATAT+TGG - chr6_4:51899287-51899306 Msa0990480:intron 30.0%
TCTTAAATCCAATATAAGGC+GGG + chr6_4:51899298-51899317 None:intergenic 30.0%
ATTTGCCCTTGCAAATTAAT+AGG - chr6_4:51899366-51899385 Msa0990480:intron 30.0%
TTTGCCCTTGCAAATTAATA+GGG - chr6_4:51899367-51899386 Msa0990480:intron 30.0%
! TATTTTTCTCCTCTTTGTGA+TGG + chr6_4:51899432-51899451 None:intergenic 30.0%
TATTATGTTAATCGCGAAGA+CGG + chr6_4:51899457-51899476 None:intergenic 30.0%
AAATGAAACCTCTACATTTG+AGG + chr6_4:51899625-51899644 None:intergenic 30.0%
!!! TATTTTTGTTGTTGTTGAGG+TGG + chr6_4:51899926-51899945 None:intergenic 30.0%
!!! GAGTATTTTTGTTGTTGTTG+AGG + chr6_4:51899929-51899948 None:intergenic 30.0%
GCAGATTTAATGGTAATCAA+GGG - chr6_4:51900220-51900239 Msa0990480:CDS 30.0%
!!! GGATTTAGAGATGTTGATTT+TGG - chr6_4:51900298-51900317 Msa0990480:CDS 30.0%
!!! TTAGAGATGTTGATTTTGGT+TGG - chr6_4:51900302-51900321 Msa0990480:CDS 30.0%
!!! TAGAGATGTTGATTTTGGTT+GGG - chr6_4:51900303-51900322 Msa0990480:CDS 30.0%
!! ACTTGAGTTGGAAAAAAAAC+TGG + chr6_4:51900439-51900458 None:intergenic 30.0%
!!! TTTTTTTCCAACTCAAGTCA+TGG - chr6_4:51900441-51900460 Msa0990480:CDS 30.0%
CTCTGTTATTCAAAGTGAAG+AGG - chr6_4:51895640-51895659 Msa0990480:CDS 35.0%
! CATGAAAGCGTAAAGATTGT+TGG + chr6_4:51895737-51895756 None:intergenic 35.0%
!! GTGTTTTATTATCCATTGGC+AGG - chr6_4:51895846-51895865 Msa0990480:CDS 35.0%
TTTATTATCCATTGGCAGGT+AGG - chr6_4:51895850-51895869 Msa0990480:CDS 35.0%
AGTACCTGAATAAGCAACAA+TGG + chr6_4:51896053-51896072 None:intergenic 35.0%
! TCATCTTCTTCATCCGTTTT+TGG - chr6_4:51896417-51896436 Msa0990480:CDS 35.0%
GATGATATGAAGGTTCATGA+AGG + chr6_4:51896483-51896502 None:intergenic 35.0%
!! ATGATGGATGAAGGAGATAA+AGG + chr6_4:51896579-51896598 None:intergenic 35.0%
! GTATGAGATGATGATGATGA+TGG + chr6_4:51896755-51896774 None:intergenic 35.0%
TGCAACAACCACAACAATTT+CGG - chr6_4:51896837-51896856 Msa0990480:intron 35.0%
TGTTTATGCCGAAATTGTTG+TGG + chr6_4:51896848-51896867 None:intergenic 35.0%
TCAAAACACAAGGGTTCAAA+TGG - chr6_4:51897051-51897070 Msa0990480:intron 35.0%
! TGCTTTTCTCTACCAATTTG+AGG - chr6_4:51897169-51897188 Msa0990480:intron 35.0%
TGAACAAATGCACCTCAAAT+TGG + chr6_4:51897184-51897203 None:intergenic 35.0%
GAAAGGACCAAAATGTGAAT+GGG - chr6_4:51897439-51897458 Msa0990480:intron 35.0%
! ACTTCGAGAAGTTTTTACTC+AGG + chr6_4:51897721-51897740 None:intergenic 35.0%
TGAGTAAAAACTTCTCGAAG+TGG - chr6_4:51897720-51897739 Msa0990480:intron 35.0%
! TGCTTCTTTCTAGAAAACAC+GGG - chr6_4:51897772-51897791 Msa0990480:intron 35.0%
! AAATCATTTGGAAGTGCAAG+GGG + chr6_4:51898335-51898354 None:intergenic 35.0%
! GAAAATCATTTGGAAGTGCA+AGG + chr6_4:51898337-51898356 None:intergenic 35.0%
TACTTATGCGTTTGAGCAAA+TGG + chr6_4:51898380-51898399 None:intergenic 35.0%
GTAAAATGACAGAAGTCTTG+TGG - chr6_4:51898619-51898638 Msa0990480:intron 35.0%
TCAACGACAATATCCAATTG+AGG + chr6_4:51898760-51898779 None:intergenic 35.0%
AATTTCCTTCAAAGACGAAG+GGG + chr6_4:51899250-51899269 None:intergenic 35.0%
! TAATTTGCAAGGGCAAATTG+CGG + chr6_4:51899364-51899383 None:intergenic 35.0%
TTCAACCATACAATGACTGA+TGG - chr6_4:51899656-51899675 Msa0990480:intron 35.0%
TGCTTTAGCAGAAATATCTC+AGG - chr6_4:51899703-51899722 Msa0990480:intron 35.0%
GCTTTAGCAGAAATATCTCA+GGG - chr6_4:51899704-51899723 Msa0990480:intron 35.0%
! AATGTGTTTGCTTTGTTGTC+AGG + chr6_4:51899830-51899849 None:intergenic 35.0%
! CACATTTTCCTTAGATGACA+TGG - chr6_4:51899844-51899863 Msa0990480:intron 35.0%
GTTAACCTACTTGTACCAAA+TGG - chr6_4:51900061-51900080 Msa0990480:intron 35.0%
AGTAACCATTTGGTACAAGT+AGG + chr6_4:51900069-51900088 None:intergenic 35.0%
CTTGTACCAAATGGTTACTA+TGG - chr6_4:51900070-51900089 Msa0990480:intron 35.0%
TCCTACAGTTGTAATTGCAA+CGG + chr6_4:51900113-51900132 None:intergenic 35.0%
GGCAGATTTAATGGTAATCA+AGG - chr6_4:51900219-51900238 Msa0990480:CDS 35.0%
!!! AGAGATGTTGATTTTGGTTG+GGG - chr6_4:51900304-51900323 Msa0990480:CDS 35.0%
AAAAATGCTAAAGGAGAGGA+AGG - chr6_4:51900403-51900422 Msa0990480:CDS 35.0%
AACATTAACTCGCCTACTAT+GGG - chr6_4:51900502-51900521 Msa0990480:CDS 35.0%
! GATTTTCTATCACCCATAGT+AGG + chr6_4:51900517-51900536 None:intergenic 35.0%
ACTATGGGTGATAGAAAATC+TGG - chr6_4:51900517-51900536 Msa0990480:CDS 35.0%
! AAACACAAGCGTTTTCGCAA+GGG + chr6_4:51895832-51895851 None:intergenic 40.0%
! AAAACACAAGCGTTTTCGCA+AGG + chr6_4:51895833-51895852 None:intergenic 40.0%
ATGGTTGATTGTACTGGAGA+AGG - chr6_4:51895900-51895919 Msa0990480:CDS 40.0%
GAGCTTATCTATGATGTTCC+TGG - chr6_4:51896005-51896024 Msa0990480:CDS 40.0%
TTTAGCACATCTGAAGAACC+AGG + chr6_4:51896026-51896045 None:intergenic 40.0%
! CACTCCATTGTTGCTTATTC+AGG - chr6_4:51896046-51896065 Msa0990480:CDS 40.0%
ATGAAGGAGAGGATTGAGAT+GGG + chr6_4:51896606-51896625 None:intergenic 40.0%
TCCTCTCCTTCATCCATTTA+TGG - chr6_4:51896613-51896632 Msa0990480:intron 40.0%
TCCATAAATGGATGAAGGAG+AGG + chr6_4:51896617-51896636 None:intergenic 40.0%
GATTTGGATGAAGCAATGAG+AGG - chr6_4:51897104-51897123 Msa0990480:intron 40.0%
GCATTTGTTCACTGTTGGAA+AGG - chr6_4:51897193-51897212 Msa0990480:intron 40.0%
GAAATCACCATCATCACCAA+TGG + chr6_4:51897228-51897247 None:intergenic 40.0%
GGAAAGGACCAAAATGTGAA+TGG - chr6_4:51897438-51897457 Msa0990480:intron 40.0%
! ATCAAGTTTTCTTACCGGTG+AGG - chr6_4:51898065-51898084 Msa0990480:intron 40.0%
!! TGAGGTTCTAGATGCATACA+TGG - chr6_4:51898083-51898102 Msa0990480:intron 40.0%
!! GAGGTTCTAGATGCATACAT+GGG - chr6_4:51898084-51898103 Msa0990480:intron 40.0%
!! AGGTTCTAGATGCATACATG+GGG - chr6_4:51898085-51898104 Msa0990480:intron 40.0%
GAGAGAGAGGAAAATTCTAC+TGG - chr6_4:51898281-51898300 Msa0990480:intron 40.0%
GACTATTCTCGGTTTATGAG+AGG + chr6_4:51898309-51898328 None:intergenic 40.0%
! GTTTGTCGTCTTCTGAAGAA+AGG + chr6_4:51898912-51898931 None:intergenic 40.0%
TTCTTCAGAAGACGACAAAC+AGG - chr6_4:51898912-51898931 Msa0990480:intron 40.0%
!! TGAAGTCTTTGAGGCTCTAA+AGG + chr6_4:51898981-51899000 None:intergenic 40.0%
! TGAAGCATCTGAAGTCTTTG+AGG + chr6_4:51898990-51899009 None:intergenic 40.0%
GACTTCAGATGCTTCATTGA+TGG - chr6_4:51898994-51899013 Msa0990480:intron 40.0%
GTAAGTTAATCGTCTCCACA+TGG - chr6_4:51899068-51899087 Msa0990480:intron 40.0%
GAGTTGAAAGACAATCCATG+TGG + chr6_4:51899086-51899105 None:intergenic 40.0%
ACCAAACCTCATCTCGTATT+GGG + chr6_4:51899186-51899205 None:intergenic 40.0%
AACCAAACCTCATCTCGTAT+TGG + chr6_4:51899187-51899206 None:intergenic 40.0%
AAAGACGAAGGGGGAATTAA+AGG + chr6_4:51899240-51899259 None:intergenic 40.0%
ATTTCCTTCAAAGACGAAGG+GGG + chr6_4:51899249-51899268 None:intergenic 40.0%
CATAACTCGTTAAGGCTTTG+TGG - chr6_4:51899326-51899345 Msa0990480:intron 40.0%
AATTTGCAAGGGCAAATTGC+GGG + chr6_4:51899363-51899382 None:intergenic 40.0%
!! CGGACCCTATTAATTTGCAA+GGG + chr6_4:51899374-51899393 None:intergenic 40.0%
CCTTGCAAATTAATAGGGTC+CGG - chr6_4:51899372-51899391 Msa0990480:intron 40.0%
AATTAATAGGGTCCGGAAAG+AGG - chr6_4:51899379-51899398 Msa0990480:intron 40.0%
CTGAAATTGTAACCATGTGC+AGG - chr6_4:51899592-51899611 Msa0990480:intron 40.0%
CTGATCCATCAGTCATTGTA+TGG + chr6_4:51899664-51899683 None:intergenic 40.0%
! CATACAATGACTGATGGATC+AGG - chr6_4:51899662-51899681 Msa0990480:intron 40.0%
TAGAATTTCTCTGCACCACA+CGG + chr6_4:51899753-51899772 None:intergenic 40.0%
CAGAGAAATTCTAAGCGCAA+GGG - chr6_4:51899760-51899779 Msa0990480:intron 40.0%
! TTTGCTTTGTTGTCAGGTTC+TGG + chr6_4:51899824-51899843 None:intergenic 40.0%
TGGAAGTAGAGAACGAATTG+CGG + chr6_4:51899906-51899925 None:intergenic 40.0%
GCGTTACCATAGTAACCATT+TGG + chr6_4:51900079-51900098 None:intergenic 40.0%
CCTACAGTTGTAATTGCAAC+GGG + chr6_4:51900112-51900131 None:intergenic 40.0%
AAATCCAGTGCATACGTCAA+CGG + chr6_4:51900151-51900170 None:intergenic 40.0%
CATTGAACGCATGTACTCTT+CGG + chr6_4:51900200-51900219 None:intergenic 40.0%
GCGTTCAATGGCAGATTTAA+TGG - chr6_4:51900210-51900229 Msa0990480:CDS 40.0%
GCATTCGCTGTAGTAAAATG+AGG + chr6_4:51900250-51900269 None:intergenic 40.0%
!!! GAGATGTTGATTTTGGTTGG+GGG - chr6_4:51900305-51900324 Msa0990480:CDS 40.0%
CAACATTAACTCGCCTACTA+TGG - chr6_4:51900501-51900520 Msa0990480:CDS 40.0%
!! TCATGAGGAGTGGGTTTTGA+TGG + chr6_4:51895687-51895706 None:intergenic 45.0%
GGGTCTTTGCCTTCCATAAT+TGG + chr6_4:51895789-51895808 None:intergenic 45.0%
TCAACCATAAGTTTCCTGCC+AGG + chr6_4:51895888-51895907 None:intergenic 45.0%
TCATCCTCCATTTCCATGCT+TGG - chr6_4:51895980-51895999 Msa0990480:CDS 45.0%
CATCCTCCATTTCCATGCTT+GGG - chr6_4:51895981-51896000 Msa0990480:CDS 45.0%
TAGATAAGCTCACCCAAGCA+TGG + chr6_4:51895996-51896015 None:intergenic 45.0%
!! ATGGGGAAGATGATGGATGA+AGG + chr6_4:51896588-51896607 None:intergenic 45.0%
GATTGAGATGGGGAAGATGA+TGG + chr6_4:51896595-51896614 None:intergenic 45.0%
TGAAGGAGAGGATTGAGATG+GGG + chr6_4:51896605-51896624 None:intergenic 45.0%
GATGAAGGAGAGGATTGAGA+TGG + chr6_4:51896607-51896626 None:intergenic 45.0%
ATGAGAGGCTAAGAACGAAG+AGG - chr6_4:51897119-51897138 Msa0990480:intron 45.0%
GAGGTGCATTTGTTCACTGT+TGG - chr6_4:51897188-51897207 Msa0990480:intron 45.0%
GGAAAGGTTGAAGATGCCAT+TGG - chr6_4:51897209-51897228 Msa0990480:intron 45.0%
!! GAAGATGCCATTGGTGATGA+TGG - chr6_4:51897218-51897237 Msa0990480:intron 45.0%
CGAACACATATTCGTCAACC+TGG + chr6_4:51897883-51897902 None:intergenic 45.0%
! GTATGCATCTAGAACCTCAC+CGG + chr6_4:51898082-51898101 None:intergenic 45.0%
CGTTGAGATGTTGCCTCAAT+TGG - chr6_4:51898744-51898763 Msa0990480:intron 45.0%
AACCTCATCTCGTATTGGGT+AGG + chr6_4:51899182-51899201 None:intergenic 45.0%
ACCCAATACGAGATGAGGTT+TGG - chr6_4:51899182-51899201 Msa0990480:intron 45.0%
AATTCCCCCTTCGTCTTTGA+AGG - chr6_4:51899242-51899261 Msa0990480:intron 45.0%
ATTTGCAAGGGCAAATTGCG+GGG + chr6_4:51899362-51899381 None:intergenic 45.0%
!! CCGGACCCTATTAATTTGCA+AGG + chr6_4:51899375-51899394 None:intergenic 45.0%
GTAACACGCCTCAAATGTAG+AGG - chr6_4:51899614-51899633 Msa0990480:intron 45.0%
AGAATTTCTCTGCACCACAC+GGG + chr6_4:51899752-51899771 None:intergenic 45.0%
GCAGAGAAATTCTAAGCGCA+AGG - chr6_4:51899759-51899778 Msa0990480:intron 45.0%
TTGGACCAAAGAAGAAAGCC+TGG + chr6_4:51899874-51899893 None:intergenic 45.0%
TTTCTTCTTTGGTCCAACCG+AGG - chr6_4:51899877-51899896 Msa0990480:intron 45.0%
CCCGTTGCAATTACAACTGT+AGG - chr6_4:51900109-51900128 Msa0990480:intron 45.0%
AATCCAGTGCATACGTCAAC+GGG + chr6_4:51900150-51900169 None:intergenic 45.0%
! CGAAGAGTACATGCGTTCAA+TGG - chr6_4:51900198-51900217 Msa0990480:CDS 45.0%
!! TATGGAGGATTAGCTAGAGC+AGG - chr6_4:51900337-51900356 Msa0990480:CDS 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - chr6_4:51900408-51900427 Msa0990480:CDS 45.0%
TTCCAACTCAAGTCATGGAG+AGG - chr6_4:51900446-51900465 Msa0990480:CDS 45.0%
AACCTCTCCATGACTTGAGT+TGG + chr6_4:51900451-51900470 None:intergenic 45.0%
AACTCAAGTCATGGAGAGGT+TGG - chr6_4:51900450-51900469 Msa0990480:CDS 45.0%
! GGAGAGGTTGGTTAAAGAGT+TGG - chr6_4:51900462-51900481 Msa0990480:CDS 45.0%
!! TTTAATAAAAAAAATGTTAA+AGG - chr6_4:51896302-51896321 Msa0990480:CDS 5.0%
!!! TTTCTAATTTTTTTATTAAA+AGG - chr6_4:51897803-51897822 Msa0990480:intron 5.0%
ATCCATTGGCAGGTAGGTTG+AGG - chr6_4:51895856-51895875 Msa0990480:CDS 50.0%
! TCCATTGGCAGGTAGGTTGA+GGG - chr6_4:51895857-51895876 Msa0990480:CDS 50.0%
AGGTCCTGGCAGGAAACTTA+TGG - chr6_4:51895881-51895900 Msa0990480:CDS 50.0%
TCACCCAAGCATGGAAATGG+AGG + chr6_4:51895987-51896006 None:intergenic 50.0%
AGCTCACCCAAGCATGGAAA+TGG + chr6_4:51895990-51896009 None:intergenic 50.0%
! AGGCGGTAGACGTGTCATTA+TGG - chr6_4:51896322-51896341 Msa0990480:CDS 50.0%
! CAACCTGGTAGCGAATGTGT+TGG + chr6_4:51897868-51897887 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr6_4:51898206-51898225 Msa0990480:intron 50.0%
GCAAGGGGCTAGACTATTCT+CGG + chr6_4:51898320-51898339 None:intergenic 50.0%
GTCCTACCCAATACGAGATG+AGG - chr6_4:51899177-51899196 Msa0990480:intron 50.0%
!! TGTTGGCCTTCTCCTCTTTC+CGG + chr6_4:51899394-51899413 None:intergenic 50.0%
! CCTCTTTGTGATGGTGACGT+GGG + chr6_4:51899423-51899442 None:intergenic 50.0%
! TCCTCTTTGTGATGGTGACG+TGG + chr6_4:51899424-51899443 None:intergenic 50.0%
AACCTTCTATCTCACCCGTG+TGG - chr6_4:51899735-51899754 Msa0990480:intron 50.0%
CGATGAGTACACGTCACTCT+TGG + chr6_4:51899791-51899810 None:intergenic 50.0%
! CTGGTGGACCATGTCATCTA+AGG + chr6_4:51899855-51899874 None:intergenic 50.0%
CTTAGATGACATGGTCCACC+AGG - chr6_4:51899853-51899872 Msa0990480:intron 50.0%
GTCCACCAGGCTTTCTTCTT+TGG - chr6_4:51899866-51899885 Msa0990480:intron 50.0%
GACCAAAGAAGAAAGCCTGG+TGG + chr6_4:51899871-51899890 None:intergenic 50.0%
AGAACGAATTGCGGCTACCT+CGG + chr6_4:51899897-51899916 None:intergenic 50.0%
AAACCCGTTGACGTATGCAC+TGG - chr6_4:51900144-51900163 Msa0990480:CDS 50.0%
CTGTCTGATGTTACACGTGC+TGG - chr6_4:51900277-51900296 Msa0990480:CDS 50.0%
GGTTGGGGGAAAGCTGTTTA+TGG - chr6_4:51900319-51900338 Msa0990480:CDS 50.0%
TGGGGGAAAGCTGTTTATGG+AGG - chr6_4:51900322-51900341 Msa0990480:CDS 50.0%
!! GGATTAGCTAGAGCAGGAGA+TGG - chr6_4:51900343-51900362 Msa0990480:CDS 50.0%
GCAGGAGATGGTACTAATCC+TGG - chr6_4:51900355-51900374 Msa0990480:CDS 50.0%
TCCCTCAACCTACCTGCCAA+TGG + chr6_4:51895861-51895880 None:intergenic 55.0%
! TTGGCAGGTAGGTTGAGGGA+AGG - chr6_4:51895861-51895880 Msa0990480:CDS 55.0%
CTGCCAACACATTCGCTACC+AGG - chr6_4:51897862-51897881 Msa0990480:intron 55.0%
GCTGCTGACGTGTTCTTCAG+AGG - chr6_4:51898948-51898967 Msa0990480:intron 55.0%
TAGGGTCCGGAAAGAGGAGA+AGG - chr6_4:51899385-51899404 Msa0990480:intron 55.0%
! TTGTGATGGTGACGTGGGAG+AGG + chr6_4:51899418-51899437 None:intergenic 55.0%
CCCACGTCACCATCACAAAG+AGG - chr6_4:51899420-51899439 Msa0990480:intron 55.0%
TGAGGCGTGTTACCTGCACA+TGG + chr6_4:51899607-51899626 None:intergenic 55.0%
CACCACACGGGTGAGATAGA+AGG + chr6_4:51899740-51899759 None:intergenic 55.0%
! GGTAGGTTGAGGGAAGGTCC+TGG - chr6_4:51895867-51895886 Msa0990480:CDS 60.0%
GGTGACGTGGGAGAGGTTGT+TGG + chr6_4:51899411-51899430 None:intergenic 60.0%
CGAATTGCGGCTACCTCGGT+TGG + chr6_4:51899893-51899912 None:intergenic 60.0%
GGTTGAGGGAAGGTCCTGGC+AGG - chr6_4:51895871-51895890 Msa0990480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 51895630 51900561 51895630 ID=Msa0990480;Name=Msa0990480
chr6_4 mRNA 51895630 51900561 51895630 ID=Msa0990480-mRNA-1;Parent=Msa0990480;Name=Msa0990480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|461
chr6_4 exon 51900124 51900561 51900124 ID=Msa0990480-mRNA-1:exon:10943;Parent=Msa0990480-mRNA-1
chr6_4 exon 51895630 51896577 51895630 ID=Msa0990480-mRNA-1:exon:10942;Parent=Msa0990480-mRNA-1
chr6_4 CDS 51900124 51900561 51900124 ID=Msa0990480-mRNA-1:cds;Parent=Msa0990480-mRNA-1
chr6_4 CDS 51895630 51896577 51895630 ID=Msa0990480-mRNA-1:cds;Parent=Msa0990480-mRNA-1
Gene Sequence

>Msa0990480

ATGGCCCAATCTCTGTTATTCAAAGTGAAGAGGAGTGAACCTGAATTGATAAGTCCATCAAAACCCACTCCTCATGAAATAAAACTACTCTCAGACATAGATGACCAACAATCTTTACGCTTTCATGTTCCTTTGATACAATTTTACAACTATAATCCAATTATGGAAGGCAAAGACCCTGTTGATGTTATTAGAAAAGCCCTTGCGAAAACGCTTGTGTTTTATTATCCATTGGCAGGTAGGTTGAGGGAAGGTCCTGGCAGGAAACTTATGGTTGATTGTACTGGAGAAGGTGTTTTGTTTATTGAAGCTGATACTGATGTTACTCTTAAACAATTTGGTGATGCACTTCATCCTCCATTTCCATGCTTGGGTGAGCTTATCTATGATGTTCCTGGTTCTTCAGATGTGCTAAACACTCCATTGTTGCTTATTCAGGTAACACGCCTCAAATGTAGAGGTTTCATTTTTGCTCTTCGTTTCAACCATACAATGACTGATGGATCAGGTATAGTTCAATTCATGAGTGCTTTAGCAGAAATATCTCAGGGTATGAGAAAACCTTCTATCTCACCCGTGTGGTGCAGAGAAATTCTAAGCGCAAGGGATTCACCAAGAGTGACGTGTACTCATCGTGAATACGAACCAGAACCTGACAACAAAGCAAACACATTTTCCTTAGATGACATGGTCCACCAGGCTTTCTTCTTTGGTCCAACCGAGGTAGCCGCAATTCGTTCTCTACTTCCACCTCAACAACAACAAAAATACTCCAATTTTGAAATCATCACATCATATTTTTGGCGTTGTCGTACACTAGCATTACAACTAGATACTAACGAAGAAGTTCGCATAATCTGCATTGTCGATGCACGTAGCAAATTTGTTAACCTACTTGTACCAAATGGTTACTATGGTAACGCTATAGCGCTTCCCGTTGCAATTACAACTGTAGGAAAACTAATTGAAAACCCGTTGACGTATGCACTGGATTTAGTTAAGAAAGCAAAAGCTAATGTCACCGAAGAGTACATGCGTTCAATGGCAGATTTAATGGTAATCAAGGGTAGACCTCATTTTACTACAGCGAATGCTTGTTTACTGTCTGATGTTACACGTGCTGGATTTAGAGATGTTGATTTTGGTTGGGGGAAAGCTGTTTATGGAGGATTAGCTAGAGCAGGAGATGGTACTAATCCTGGTATTTTTACCAGTTATATACCTTTTAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCAGTTTTTTTTCCAACTCAAGTCATGGAGAGGTTGGTTAAAGAGTTGGATAAAGTTCTTAAGAACAACATTAACTCGCCTACTATGGGTGATAGAAAATCTGGAATCATTATTTCTTCGTTGTAG
Protein sequence

>Msa0990480

MAQSLLFKVKRSEPELISPSKPTPHEIKLLSDIDDQQSLRFHVPLIQFYNYNPIMEGKDPVDVIRKALAKTLVFYYPLAGRLREGPGRKLMVDCTGEGVLFIEADTDVTLKQFGDALHPPFPCLGELIYDVPGSSDVLNTPLLLIQVTRLKCRGFIFALRFNHTMTDGSGIVQFMSALAEISQGMRKPSISPVWCREILSARDSPRVTCTHREYEPEPDNKANTFSLDDMVHQAFFFGPTEVAAIRSLLPPQQQQKYSNFEIITSYFWRCRTLALQLDTNEEVRIICIVDARSKFVNLLVPNGYYGNAIALPVAITTVGKLIENPLTYALDLVKKAKANVTEEYMRSMADLMVIKGRPHFTTANACLLSDVTRAGFRDVDFGWGKAVYGGLARAGDGTNPGIFTSYIPFKNAKGEEGLVIPVFFPTQVMERLVKELDKVLKNNINSPTMGDRKSGIIISSL*