AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554660 MtrunA17_Chr4g0033341 95.914 514 21 0 1 514 31 544 0.0 1023
Msa0554660 MtrunA17_Chr4g0033311 68.217 516 160 2 1 513 1 515 0.0 751
Msa0554660 MtrunA17_Chr3g0088441 67.530 502 159 2 15 513 14 514 0.0 733
Msa0554660 MtrunA17_Chr4g0033331 67.540 496 155 3 21 511 19 513 0.0 717
Msa0554660 MtrunA17_Chr4g0033401 67.071 495 159 2 20 511 15 508 0.0 715
Msa0554660 MtrunA17_Chr4g0033321 66.467 501 163 3 15 511 8 507 0.0 713
Msa0554660 MtrunA17_Chr2g0329201 67.327 505 156 5 14 513 7 507 0.0 713
Msa0554660 MtrunA17_Chr2g0329191 68.172 487 150 3 30 513 25 509 0.0 711
Msa0554660 MtrunA17_Chr6g0482131 64.314 510 177 3 8 513 4 512 0.0 699
Msa0554660 MtrunA17_Chr6g0482071 62.620 519 179 5 4 513 1 513 0.0 680
Msa0554660 MtrunA17_Chr4g0033201 61.057 511 195 2 7 514 4 513 0.0 676
Msa0554660 MtrunA17_Chr4g0033271 62.891 512 181 5 7 514 6 512 0.0 672
Msa0554660 MtrunA17_Chr4g0033191 62.828 495 177 3 26 514 27 520 0.0 671
Msa0554660 MtrunA17_Chr4g0033261 63.074 501 159 3 15 513 17 493 0.0 660
Msa0554660 MtrunA17_Chr6g0482081 62.500 512 186 4 7 513 3 513 0.0 659
Msa0554660 MtrunA17_Chr4g0033231 60.479 501 172 3 16 514 18 494 0.0 648
Msa0554660 MtrunA17_Chr2g0329321 59.649 513 174 5 7 513 3 488 0.0 640
Msa0554660 MtrunA17_Chr5g0430451 56.084 526 190 6 1 513 1 498 0.0 579
Msa0554660 MtrunA17_Chr4g0006111 56.088 501 182 8 25 513 51 525 0.0 566
Msa0554660 MtrunA17_Chr4g0010501 55.230 478 206 4 38 513 23 494 0.0 559
Msa0554660 MtrunA17_Chr3g0087261 53.502 514 230 6 4 513 1 509 0.0 545
Msa0554660 MtrunA17_Chr4g0006131 54.706 510 194 9 16 514 19 502 0.0 538
Msa0554660 MtrunA17_Chr4g0043091 51.367 512 223 8 12 512 6 502 0.0 524
Msa0554660 MtrunA17_Chr3g0087271 52.039 515 240 5 1 513 1 510 1.19e-180 517
Msa0554660 MtrunA17_Chr6g0482941 49.016 508 246 8 10 513 14 512 7.24e-166 479
Msa0554660 MtrunA17_Chr4g0042171 47.852 512 243 8 12 512 1 499 3.52e-164 475
Msa0554660 MtrunA17_Chr6g0482951 47.628 506 256 6 10 513 14 512 4.34e-163 472
Msa0554660 MtrunA17_Chr3g0090131 46.960 477 242 5 36 512 18 483 1.83e-155 452
Msa0554660 MtrunA17_Chr2g0301231 53.717 417 158 7 107 513 1 392 8.63e-155 446
Msa0554660 MtrunA17_Chr3g0090111 46.624 474 241 6 39 512 19 480 6.27e-153 446
Msa0554660 MtrunA17_Chr4g0074561 45.842 493 248 6 25 511 31 510 6.21e-152 444
Msa0554660 MtrunA17_Chr4g0074551 48.000 475 239 6 44 514 55 525 4.66e-150 441
Msa0554660 MtrunA17_Chr2g0288071 46.960 477 246 5 42 514 70 543 5.22e-150 440
Msa0554660 MtrunA17_Chr2g0288021 44.553 514 271 8 7 514 5 510 4.09e-143 421
Msa0554660 MtrunA17_Chr7g0242681 46.392 485 227 11 39 512 38 500 5.79e-142 419
Msa0554660 MtrunA17_Chr5g0428831 44.685 508 249 11 13 512 6 489 4.07e-141 416
Msa0554660 MtrunA17_Chr7g0242691 44.398 482 246 8 38 513 30 495 1.14e-140 415
Msa0554660 MtrunA17_Chr1g0195611 45.079 508 246 10 13 512 6 488 2.02e-140 414
Msa0554660 MtrunA17_Chr2g0317821 41.910 513 276 8 6 511 6 503 1.37e-138 410
Msa0554660 MtrunA17_Chr2g0317841 41.520 513 278 8 6 511 6 503 1.90e-138 410
Msa0554660 MtrunA17_Chr4g0006971 44.885 479 242 9 39 511 27 489 7.24e-134 398
Msa0554660 MtrunA17_Chr7g0234131 43.882 474 247 6 40 511 76 532 3.07e-123 371
Msa0554660 MtrunA17_Chr7g0234091 43.396 477 250 7 40 514 76 534 4.26e-123 371
Msa0554660 MtrunA17_Chr7g0234111 43.277 476 252 5 40 514 76 534 3.55e-121 366
Msa0554660 MtrunA17_Chr3g0087201 53.593 334 146 4 183 513 17 344 1.77e-120 357
Msa0554660 MtrunA17_Chr5g0418871 56.623 302 124 4 58 356 2 299 2.27e-119 354
Msa0554660 MtrunA17_Chr1g0195641 47.449 392 187 6 38 423 26 404 4.27e-114 343
Msa0554660 MtrunA17_Chr7g0230651 43.164 373 198 5 86 458 18 376 1.54e-98 302
Msa0554660 MtrunA17_Chr3g0087191 66.897 145 48 0 38 182 21 165 3.06e-70 222
Msa0554660 MtrunA17_Chr7g0236731 46.667 240 123 3 128 366 28 263 5.75e-60 199
Msa0554660 MtrunA17_Chr7g0227561 38.007 271 129 5 41 307 48 283 1.23e-59 199
Msa0554660 MtrunA17_Chr4g0068871 26.389 432 234 16 80 503 169 524 1.74e-24 107
Msa0554660 MtrunA17_Chr5g0418861 52.222 90 42 1 423 511 1 90 3.24e-24 96.7
Msa0554660 MtrunA17_Chr8g0352881 46.392 97 51 1 262 358 57 152 1.82e-20 88.6
Msa0554660 MtrunA17_Chr8g0352881 48.148 54 27 1 48 101 7 59 9.14e-11 60.5
Msa0554660 MtrunA17_Chr2g0288031 54.237 59 25 1 191 247 4 62 2.77e-12 62.0
Msa0554660 MtrunA17_Chr7g0227591 52.727 55 26 0 460 514 14 68 7.06e-12 60.8
Msa0554660 MtrunA17_Chr1g0195651 54.902 51 22 1 463 512 1 51 1.87e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554660 AT5G44640.1 53.876 516 218 8 6 514 5 507 0.0 566
Msa0554660 AT5G42260.1 54.473 503 214 7 9 507 6 497 0.0 558
Msa0554660 AT2G44450.1 55.165 484 204 5 31 511 27 500 0.0 554
Msa0554660 AT2G44480.1 54.622 476 213 2 38 511 34 508 0.0 545
Msa0554660 AT2G44480.3 54.622 476 213 2 38 511 65 539 0.0 545
Msa0554660 AT3G60130.1 53.556 478 212 5 39 512 30 501 0.0 527
Msa0554660 AT2G25630.1 51.569 510 212 8 6 511 5 483 0.0 520
Msa0554660 AT1G26560.1 53.320 482 215 6 36 511 29 506 1.62e-177 509
Msa0554660 AT5G24550.1 48.047 512 258 6 9 514 3 512 1.88e-174 502
Msa0554660 AT3G60140.1 48.354 486 237 5 38 514 25 505 1.73e-171 496
Msa0554660 AT3G18080.1 51.235 486 223 8 34 514 34 510 1.95e-171 494
Msa0554660 AT3G60120.1 50.312 481 232 5 38 513 13 491 4.79e-170 491
Msa0554660 AT5G24540.1 48.077 520 243 7 9 514 6 512 5.11e-169 488
Msa0554660 AT1G51470.1 49.053 475 234 5 39 513 45 511 1.36e-168 486
Msa0554660 AT5G54570.1 49.485 485 226 6 38 511 29 505 1.45e-168 487
Msa0554660 AT2G44490.1 49.687 479 233 5 41 512 16 493 1.34e-167 486
Msa0554660 AT1G47600.1 49.057 477 231 6 39 513 45 511 7.40e-167 482
Msa0554660 AT1G47600.2 48.847 477 231 6 39 513 45 510 1.93e-166 481
Msa0554660 AT2G44460.1 47.151 509 253 7 12 511 3 504 2.82e-163 476
Msa0554660 AT3G18070.3 48.262 489 231 9 31 514 22 493 4.66e-162 469
Msa0554660 AT3G18070.1 48.466 489 236 9 31 514 22 499 7.35e-161 466
Msa0554660 AT2G44470.3 44.531 512 274 5 7 513 1 507 4.10e-160 468
Msa0554660 AT2G44480.2 53.071 407 188 2 107 511 1 406 1.04e-158 457
Msa0554660 AT5G25980.2 46.169 522 261 12 1 512 12 523 2.28e-156 457
Msa0554660 AT3G60130.2 53.365 416 184 5 101 512 40 449 2.76e-156 453
Msa0554660 AT2G32860.1 47.908 478 243 4 39 511 94 570 7.39e-156 457
Msa0554660 AT2G32860.2 47.490 478 246 3 39 511 94 571 8.20e-155 455
Msa0554660 AT3G09260.1 46.458 480 250 5 39 513 35 512 3.09e-154 450
Msa0554660 AT1G75940.1 46.307 501 255 8 21 511 21 517 9.88e-154 449
Msa0554660 AT5G36890.1 46.835 474 239 6 41 512 18 480 2.96e-152 444
Msa0554660 AT5G36890.2 46.835 474 239 6 41 512 18 480 3.44e-152 444
Msa0554660 AT3G03640.1 44.444 513 273 7 9 513 6 514 3.05e-150 441
Msa0554660 AT5G54570.3 49.652 431 199 5 38 458 29 451 4.04e-149 434
Msa0554660 AT1G66280.1 44.800 500 264 7 20 511 15 510 3.04e-148 435
Msa0554660 AT3G60130.3 52.163 416 178 6 101 512 40 438 4.56e-148 432
Msa0554660 AT1G66270.1 44.578 498 260 7 28 513 19 512 3.46e-147 432
Msa0554660 AT3G21370.1 45.267 486 248 8 39 512 33 512 5.57e-147 432
Msa0554660 AT5G28510.1 42.913 515 280 7 7 511 9 519 3.29e-146 430
Msa0554660 AT5G26000.1 48.017 479 230 10 43 511 42 511 6.50e-146 430
Msa0554660 AT5G24540.2 47.403 462 217 6 9 457 6 454 9.01e-146 426
Msa0554660 AT1G02850.2 46.694 484 223 10 40 512 27 486 5.22e-145 426
Msa0554660 AT1G52400.3 45.029 513 267 9 9 512 10 516 5.98e-145 427
Msa0554660 AT1G52400.1 45.029 513 267 9 9 512 10 516 5.98e-145 427
Msa0554660 AT1G66270.2 44.177 498 260 8 28 513 19 510 9.12e-144 424
Msa0554660 AT1G61820.1 45.607 478 252 7 42 514 33 507 3.19e-141 417
Msa0554660 AT2G44470.1 44.615 455 243 4 7 457 1 450 4.03e-141 414
Msa0554660 AT5G25980.3 46.137 466 233 10 1 458 12 467 1.14e-140 414
Msa0554660 AT5G25980.1 46.137 466 233 10 1 458 12 467 1.14e-140 414
Msa0554660 AT1G02850.5 44.773 507 222 11 40 512 27 509 3.14e-140 414
Msa0554660 AT1G02850.4 44.882 508 221 12 40 512 27 510 2.13e-138 410
Msa0554660 AT4G27830.1 44.099 483 247 8 35 511 19 484 2.55e-138 409
Msa0554660 AT3G60140.2 48.363 397 192 4 38 426 25 416 4.90e-138 407
Msa0554660 AT1G60090.2 43.615 509 251 12 11 512 4 483 2.14e-137 407
Msa0554660 AT4G22100.1 44.259 479 245 8 41 514 24 485 1.18e-136 405
Msa0554660 AT4G27820.1 45.833 480 233 9 39 511 23 482 2.47e-136 404
Msa0554660 AT2G44450.2 53.803 355 155 4 160 511 1 349 5.72e-135 395
Msa0554660 AT1G60090.1 42.969 512 257 13 11 512 4 490 1.45e-134 400
Msa0554660 AT4G21760.2 43.277 476 249 8 44 511 59 521 5.40e-134 399
Msa0554660 AT1G45191.4 44.538 476 240 8 40 512 30 484 1.14e-133 397
Msa0554660 AT1G02850.1 44.835 484 205 10 40 512 27 459 1.90e-133 395
Msa0554660 AT5G54570.2 47.356 416 200 6 107 511 1 408 2.38e-133 394
Msa0554660 AT1G45191.2 43.724 478 247 8 40 512 30 490 9.39e-132 392
Msa0554660 AT1G61810.1 44.283 481 260 7 39 514 33 510 4.67e-131 391
Msa0554660 AT5G26000.2 48.113 424 203 8 43 458 42 456 8.91e-131 388
Msa0554660 AT2G44480.4 58.974 312 124 3 38 347 65 374 1.32e-130 385
Msa0554660 AT1G45191.6 43.505 485 243 9 40 512 30 495 2.09e-130 389
Msa0554660 AT4G21760.1 42.647 476 242 9 44 511 59 511 1.64e-128 385
Msa0554660 AT1G45191.1 42.886 492 248 10 40 512 30 507 8.86e-128 383
Msa0554660 AT1G52400.2 45.077 457 237 8 9 457 10 460 3.16e-126 377
Msa0554660 AT3G62750.1 41.458 480 251 10 36 511 20 473 1.89e-125 376
Msa0554660 AT3G62750.2 41.458 480 251 10 36 511 46 499 5.99e-125 375
Msa0554660 AT1G61810.3 44.086 465 252 7 39 498 33 494 9.06e-124 373
Msa0554660 AT2G44470.2 46.133 375 197 3 31 401 21 394 3.79e-120 358
Msa0554660 AT3G62740.1 40.246 487 268 9 28 511 12 478 9.47e-120 361
Msa0554660 AT1G02850.3 46.154 416 173 9 40 422 27 424 2.47e-117 353
Msa0554660 AT5G48375.1 44.444 441 169 11 39 473 38 408 4.38e-116 350
Msa0554660 AT3G18070.4 51.376 327 151 5 31 355 22 342 3.72e-112 338
Msa0554660 AT4G27830.2 43.309 411 212 7 107 511 1 396 4.93e-111 336
Msa0554660 AT1G60270.1 46.257 374 185 7 11 380 1 362 4.95e-110 332
Msa0554660 AT4G27820.2 44.660 412 206 8 107 511 1 397 3.65e-108 329
Msa0554660 AT4G27820.3 44.660 412 206 8 107 511 1 397 3.65e-108 329
Msa0554660 AT2G44460.2 47.383 363 177 5 158 511 1 358 3.87e-108 329
Msa0554660 AT3G62750.4 40.323 434 230 9 36 466 46 453 1.10e-106 326
Msa0554660 AT1G51490.1 47.246 345 171 5 46 389 27 361 4.59e-106 323
Msa0554660 AT1G45191.5 47.761 335 163 5 40 370 30 356 1.29e-105 322
Msa0554660 AT1G45191.3 47.761 335 163 5 40 370 30 356 1.45e-105 322
Msa0554660 AT1G61810.5 43.873 408 221 7 112 514 6 410 2.56e-105 322
Msa0554660 AT1G61810.4 44.730 389 208 6 39 422 33 419 1.93e-104 319
Msa0554660 AT3G62740.2 40.185 433 235 9 28 457 12 423 4.86e-102 313
Msa0554660 AT3G18070.2 47.416 329 162 6 191 514 100 422 6.39e-100 308
Msa0554660 AT3G18070.2 54.930 71 31 1 31 101 22 91 9.93e-18 85.9
Msa0554660 AT2G44480.5 48.845 303 152 2 211 511 1 302 9.77e-100 303
Msa0554660 AT3G62750.7 43.860 342 172 6 36 377 20 341 4.85e-98 301
Msa0554660 AT3G62750.8 43.860 342 172 6 36 377 20 341 4.85e-98 301
Msa0554660 AT3G62750.6 40.098 409 220 9 107 511 1 388 6.25e-98 302
Msa0554660 AT3G62750.5 40.098 409 220 9 107 511 1 388 6.25e-98 302
Msa0554660 AT3G62750.3 43.860 342 172 6 36 377 46 367 8.32e-97 300
Msa0554660 AT1G61820.3 43.597 367 200 6 153 514 4 368 4.17e-96 296
Msa0554660 AT3G18070.7 46.835 316 157 6 204 514 1 310 3.87e-94 289
Msa0554660 AT1G61810.2 50.936 267 127 3 42 306 36 300 2.27e-87 271
Msa0554660 AT1G60270.2 47.122 278 140 4 107 380 1 275 4.09e-81 254
Msa0554660 AT3G18070.5 47.280 239 118 4 191 424 100 335 1.20e-67 221
Msa0554660 AT3G18070.5 54.930 71 31 1 31 101 22 91 5.20e-18 85.9
Msa0554660 AT3G18070.6 46.460 226 113 4 204 424 1 223 4.35e-62 203
Msa0554660 AT5G16580.1 39.161 286 159 4 185 468 27 299 5.21e-53 181
Msa0554660 AT3G06510.1 25.714 420 235 14 102 512 159 510 8.21e-26 111
Msa0554660 AT3G06510.2 25.057 435 253 14 102 512 159 544 3.87e-24 106

Find 117 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTTAATTTCAGGTTTA+TGG 0.066072 4_1:+52116699 Msa0554660:intron
TTTCCACGTGGCTTCATCTT+TGG 0.183969 4_1:+52111419 Msa0554660:CDS
TGATTATGTGTAACTATATA+AGG 0.212347 4_1:-52115285 None:intergenic
TTCCACGTGGCTTCATCTTT+GGG 0.217307 4_1:+52111420 Msa0554660:CDS
ACATGTTTGGGTGGTAATTC+TGG 0.227903 4_1:+52115255 Msa0554660:CDS
ACAATTGCAGTTGAACAAAA+TGG 0.236440 4_1:+52117037 Msa0554660:intron
GACTTACTTGGGAGTATTCT+TGG 0.244929 4_1:-52114606 None:intergenic
AGATCACTTGACTTCCAATT+TGG 0.245781 4_1:+52115562 Msa0554660:CDS
TTCTGTAGAAGAAGCTCTTT+TGG 0.269060 4_1:+52117550 Msa0554660:CDS
TAATTAATTACCATCCAAAT+TGG 0.278065 4_1:-52115576 None:intergenic
CATTGCCTTGTGGAGGTAAA+TGG 0.282756 4_1:-52116867 None:intergenic
GCATAACATTGGTAACAAAT+TGG 0.283831 4_1:+52115491 Msa0554660:CDS
TTGTATAGGCTGCTTCAATT+TGG 0.290045 4_1:+52117238 Msa0554660:intron
GCAGGCTTTACTGTTCGTTT+TGG 0.320565 4_1:+52117878 Msa0554660:CDS
GTGGTAGAGGACCAAGTATC+TGG 0.325786 4_1:+52112011 Msa0554660:CDS
ATGTTCTAGCCCAACATGTT+TGG 0.329686 4_1:+52115242 Msa0554660:CDS
GACTGTAATGAATGGATTGC+AGG 0.338534 4_1:+52117860 Msa0554660:CDS
GATTATGAAGGATCAGAATA+TGG 0.342816 4_1:+52114557 Msa0554660:CDS
GTGGTCTACATTACTGAAAA+TGG 0.345716 4_1:+52117327 Msa0554660:CDS
GATCTTTGCTTCAAGGAATT+CGG 0.349501 4_1:+52115132 Msa0554660:CDS
TACCATTGAGCAGAAAGCTT+TGG 0.350960 4_1:-52117941 None:intergenic
CTATGCTGATCTTTGCTTCA+AGG 0.368377 4_1:+52115125 Msa0554660:CDS
TGTTCTAGCCCAACATGTTT+GGG 0.369906 4_1:+52115243 Msa0554660:CDS
GGATAATCTCCGGTTGTTAG+AGG 0.377413 4_1:-52116724 None:intergenic
ACCATTGAGCAGAAAGCTTT+GGG 0.379817 4_1:-52117940 None:intergenic
GCATATCAAAAGGGCAAGAT+AGG 0.386935 4_1:+52115469 Msa0554660:CDS
AACTTTGTAGATTACAATGA+TGG 0.387322 4_1:+52117905 Msa0554660:CDS
TGACCAATACCATCGCTATA+AGG 0.400152 4_1:+52113378 Msa0554660:CDS
AAAAGATCTCGAAGTCCTCT+TGG 0.415218 4_1:-52117273 None:intergenic
CGTGGCTTCATCTTTGGGGC+GGG 0.423208 4_1:+52111425 Msa0554660:CDS
TCGGAGATAGAGTGAAGTAC+TGG 0.425135 4_1:+52115151 Msa0554660:CDS
ATACTCGTCTTCTAAGACTT+GGG 0.426002 4_1:-52114975 None:intergenic
TGTGTATAAGATCAAGTATC+AGG 0.435270 4_1:+52115335 Msa0554660:CDS
CAACCTCATCAACGAATTGT+TGG 0.435996 4_1:+52114795 Msa0554660:CDS
AAGTGTGCAGGCATATCAAA+AGG 0.439406 4_1:+52115459 Msa0554660:intron
AAACCAAATATGGTATTCAT+TGG 0.445254 4_1:+52111281 None:intergenic
ATCAACGAATTGTTGGCTAA+TGG 0.451216 4_1:+52114802 Msa0554660:CDS
CAATAGCATACCCGATCAAA+AGG 0.455559 4_1:+52115531 Msa0554660:CDS
GCACCAGCTTCAAACAATAT+AGG 0.456067 4_1:-52117990 None:intergenic
ATTTAGTGAACTTAGGCAAT+CGG 0.457331 4_1:-52116774 None:intergenic
TTGGAAGTCAAGTGATCTCT+TGG 0.460981 4_1:-52115557 None:intergenic
CAAACATGTATATAGTTTGA+AGG 0.469332 4_1:+52111974 Msa0554660:intron
TATTACTACAGGAAGATGTT+GGG 0.470013 4_1:+52114535 Msa0554660:intron
TTATTACTACAGGAAGATGT+TGG 0.473846 4_1:+52114534 Msa0554660:intron
CCTATAGATTCTCAATCGCT+TGG 0.475831 4_1:+52114583 Msa0554660:CDS
CAAGTCTTAGAAGACGAGTA+TGG 0.476058 4_1:+52114977 Msa0554660:CDS
ACCCAAAGCTTTCTGCTCAA+TGG 0.488244 4_1:+52117939 Msa0554660:CDS
TTACATGAAGTATTAGTCAT+AGG 0.489885 4_1:-52116913 None:intergenic
CCAAGCGATTGAGAATCTAT+AGG 0.495495 4_1:-52114583 None:intergenic
ATAGGATCTGTTAAGTAACT+TGG 0.496012 4_1:-52116895 None:intergenic
CAGGGCCGGCTCGAATGTAA+AGG 0.500785 4_1:+52117814 Msa0554660:intron
GATTGCAATTTAGTGAACTT+AGG 0.503385 4_1:-52116781 None:intergenic
GTGAAGGTGTCCCAGATACT+TGG 0.503819 4_1:-52112022 None:intergenic
CATACTCGTCTTCTAAGACT+TGG 0.503889 4_1:-52114976 None:intergenic
AATTACCACCCAAACATGTT+GGG 0.506442 4_1:-52115251 None:intergenic
GTACCTTATAGCGATGGTAT+TGG 0.507757 4_1:-52113381 None:intergenic
GTCACACTTACTTTCGCAAA+CGG 0.507884 4_1:+52111347 Msa0554660:CDS
CACTTGACTTCCAATTTGGA+TGG 0.509427 4_1:+52115566 Msa0554660:CDS
TCCACGTGGCTTCATCTTTG+GGG 0.509644 4_1:+52111421 Msa0554660:CDS
AGCAATGGTGGATATGCAAT+GGG 0.510047 4_1:+52115201 Msa0554660:CDS
AGTCCTATATTGTTTGAAGC+TGG 0.511064 4_1:+52117987 Msa0554660:exon
AAAATTAAACTGATATATGA+AGG 0.514920 4_1:-52118125 None:intergenic
ACAAATTGGTTCATACCACT+TGG 0.515567 4_1:+52115505 Msa0554660:CDS
TTTATGGAACCTCTAACAAC+CGG 0.516409 4_1:+52116715 Msa0554660:CDS
CTATGATCATATATATTAGT+TGG 0.516737 4_1:+52118101 Msa0554660:three_prime_UTR
CCATGGTTGTTTAGCAATGG+TGG 0.521328 4_1:+52115189 Msa0554660:CDS
AGGGCCGGCTCGAATGTAAA+GGG 0.522499 4_1:+52117815 Msa0554660:intron
GTGGAAAACTACTCCGACTC+AGG 0.522539 4_1:-52111403 None:intergenic
TTGCAATCAAAGCTAGTGAA+TGG 0.522902 4_1:+52116796 Msa0554660:CDS
TTTGAAGGTGCAGTAAAGAA+AGG 0.523671 4_1:+52111989 Msa0554660:CDS
GAATTACCACCCAAACATGT+TGG 0.526460 4_1:-52115252 None:intergenic
TGATCATAGCTGCTGGTACA+AGG 0.532753 4_1:-52118087 None:intergenic
GCAGTAAAGAAAGGTGGTAG+AGG 0.538530 4_1:+52111998 Msa0554660:CDS
GGATCTGTTAAGTAACTTGG+AGG 0.542167 4_1:-52116892 None:intergenic
ACCTTCACCCATCAACATCC+AGG 0.542518 4_1:+52112037 Msa0554660:CDS
ATGGAAAACCTCTAGGTCCA+AGG 0.542893 4_1:+52117056 Msa0554660:CDS
ATATATATGATCATAGCTGC+TGG 0.546503 4_1:-52118094 None:intergenic
AACAACAAAGAGAGCAAGCA+TGG 0.551044 4_1:-52111318 None:intergenic
ATTACAATGATGGATTGAAA+AGG 0.551309 4_1:+52117915 Msa0554660:CDS
AAAATAGAGGGGAAGTTGAG+TGG 0.552316 4_1:+52114739 Msa0554660:intron
GGGTTACATTTAACGAGCCA+TGG 0.553181 4_1:+52115172 Msa0554660:CDS
GAACAAAATGGAAAACCTCT+AGG 0.554211 4_1:+52117049 Msa0554660:CDS
TAGCCAACAATTCGTTGATG+AGG 0.556574 4_1:-52114798 None:intergenic
AAAATATTATTACTTGATTG+CGG 0.557783 4_1:-52117621 None:intergenic
ACGTGGCTTCATCTTTGGGG+CGG 0.566913 4_1:+52111424 Msa0554660:CDS
TGGTAGAGGACCAAGTATCT+GGG 0.567259 4_1:+52112012 Msa0554660:CDS
TTGACATCGGCAACCTGAGT+CGG 0.575732 4_1:+52111390 Msa0554660:CDS
GAGCCATGGTTGTTTAGCAA+TGG 0.578752 4_1:+52115186 Msa0554660:CDS
CTCAGGTTGCCGATGTCAAG+AGG 0.581408 4_1:-52111386 None:intergenic
AAATCCCTTTACATTCGAGC+CGG 0.581654 4_1:-52117819 None:intergenic
TGGAAAACCTCTAGGTCCAA+GGG 0.581920 4_1:+52117057 Msa0554660:CDS
GGAAGATGTTGGGATTATGA+AGG 0.590173 4_1:+52114545 Msa0554660:intron
CGGAGATAGAGTGAAGTACT+GGG 0.599926 4_1:+52115152 Msa0554660:CDS
GAAGGTGCAGTAAAGAAAGG+TGG 0.607156 4_1:+52111992 Msa0554660:CDS
AGTGTGCAGGCATATCAAAA+GGG 0.608518 4_1:+52115460 Msa0554660:intron
CTTGGAGGAGCATTGCCTTG+TGG 0.612202 4_1:-52116877 None:intergenic
GCAATGGGAACAACAGCACC+AGG 0.613253 4_1:+52115216 Msa0554660:CDS
TGGATATACGTTTATCCAAG+AGG 0.618701 4_1:+52117258 Msa0554660:CDS
AGTGGAGGCATAAATCATGA+AGG 0.618703 4_1:+52114757 Msa0554660:CDS
GGAGGAGCATTGCCTTGTGG+AGG 0.623056 4_1:-52116874 None:intergenic
GGGCAAGATAGGCATAACAT+TGG 0.623136 4_1:+52115480 Msa0554660:CDS
ACCTGGATGTTGATGGGTGA+AGG 0.626176 4_1:-52112038 None:intergenic
TACTCGTCTTCTAAGACTTG+GGG 0.626972 4_1:-52114974 None:intergenic
AGACTTACCCTTGGACCTAG+AGG 0.628477 4_1:-52117064 None:intergenic
GTTTCAACTCCTCTTGACAT+CGG 0.629562 4_1:+52111377 Msa0554660:CDS
GAGCTAGTACCTTATAGCGA+TGG 0.633224 4_1:-52113387 None:intergenic
GTCTTAGAAGACGAGTATGG+TGG 0.639976 4_1:+52114980 Msa0554660:CDS
ATAGAGGGGAAGTTGAGTGG+AGG 0.640276 4_1:+52114742 Msa0554660:intron
ATTCATTGGCTATTTCAATG+TGG 0.649386 4_1:+52111295 Msa0554660:CDS
TAGCAATGGTGGATATGCAA+TGG 0.649852 4_1:+52115200 Msa0554660:CDS
TCTAGCCCAACATGTTTGGG+TGG 0.652575 4_1:+52115246 Msa0554660:CDS
CCACCATTGCTAAACAACCA+TGG 0.670286 4_1:-52115189 None:intergenic
GCCCCAAAGATGAAGCCACG+TGG 0.674470 4_1:-52111422 None:intergenic
ATTAACCATTTACCTCCACA+AGG 0.685327 4_1:+52116862 Msa0554660:CDS
GGTATGCTATTGTTTCCAAG+TGG 0.687798 4_1:-52115520 None:intergenic
GGAGAAATACAACAATCCTG+TGG 0.690499 4_1:+52117308 Msa0554660:CDS
GTTGGGCTAGAACATCGACC+TGG 0.733866 4_1:-52115234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAACC+TGG - chr4_1:52112058-52112077 None:intergenic 10.0%
!!! ATATCATTTTTTTTTTTTGA+GGG - chr4_1:52112757-52112776 None:intergenic 10.0%
!! CTTTATTAAAAAGTTTAATT+TGG - chr4_1:52112829-52112848 None:intergenic 10.0%
!!! TTTTAAATGTAGAAAAAATA+AGG + chr4_1:52113329-52113348 Msa0554660:intron 10.0%
!! TTTAAATGTAGAAAAAATAA+GGG + chr4_1:52113330-52113349 Msa0554660:intron 10.0%
!! TAATAATTCCTATTTAATAT+AGG - chr4_1:52113416-52113435 None:intergenic 10.0%
!! TATATTTAATGATAACTTAA+GGG + chr4_1:52113461-52113480 Msa0554660:intron 10.0%
!! AAAATCCTATTTATTATTAT+AGG - chr4_1:52113496-52113515 None:intergenic 10.0%
!!! AATAAAAAATTTGTTGTTTT+CGG - chr4_1:52113523-52113542 None:intergenic 10.0%
!! TTATATTATATATAATTTGG+AGG - chr4_1:52113962-52113981 None:intergenic 10.0%
!! AATAACTTAAAAAGAATTAA+TGG + chr4_1:52114142-52114161 Msa0554660:intron 10.0%
!! TAATATATGAAAATTATACA+TGG - chr4_1:52114264-52114283 None:intergenic 10.0%
!!! AATTAATTATTGATTTGTTT+TGG + chr4_1:52114417-52114436 Msa0554660:intron 10.0%
!! TATATTAAATTTATTACTAC+AGG + chr4_1:52114524-52114543 Msa0554660:intron 10.0%
!!! TTTATTTTAAATTGTTTGAT+TGG + chr4_1:52116681-52116700 Msa0554660:intron 10.0%
!! TATATCTATAATAATTGTAT+AGG + chr4_1:52117224-52117243 Msa0554660:intron 10.0%
!! TAGTTTCTCATATATTATAA+AGG - chr4_1:52111890-52111909 None:intergenic 15.0%
!! TAAATGTTTACATTCAAATA+TGG - chr4_1:52112232-52112251 None:intergenic 15.0%
!!! ATTTAAAACTTGTTAATCAT+GGG + chr4_1:52112247-52112266 Msa0554660:intron 15.0%
!!! AAATATATTTTATTGCAAGT+CGG - chr4_1:52112288-52112307 None:intergenic 15.0%
!!! GATATCATTTTTTTTTTTTG+AGG - chr4_1:52112758-52112777 None:intergenic 15.0%
!!! AACTTTTTAATAAAGACAAA+AGG + chr4_1:52112834-52112853 Msa0554660:intron 15.0%
!! CAAAAGATAATCTATTTAAA+TGG - chr4_1:52113116-52113135 None:intergenic 15.0%
!! GTATATTTAATGATAACTTA+AGG + chr4_1:52113460-52113479 Msa0554660:intron 15.0%
!! TTATATTGTAAAGTGATAAA+AGG - chr4_1:52113567-52113586 None:intergenic 15.0%
!!! TTATATTAGTTTCTTTAACT+AGG + chr4_1:52113592-52113611 Msa0554660:intron 15.0%
!!! GTTTTAAAAAAAACAAAAGA+GGG - chr4_1:52113639-52113658 None:intergenic 15.0%
!!! TGTTTTAAAAAAAACAAAAG+AGG - chr4_1:52113640-52113659 None:intergenic 15.0%
!!! AAAATCCTACAATTTATTTT+AGG - chr4_1:52114044-52114063 None:intergenic 15.0%
!! AATCAAAACAACAATATTAT+AGG - chr4_1:52114189-52114208 None:intergenic 15.0%
!!! GTTTTTAACATAATATTTTC+TGG + chr4_1:52114647-52114666 Msa0554660:intron 15.0%
!!! TTTTTACTTCATAAAAATAG+AGG + chr4_1:52114726-52114745 Msa0554660:intron 15.0%
!!! TTTTACTTCATAAAAATAGA+GGG + chr4_1:52114727-52114746 Msa0554660:intron 15.0%
!! ACAAAATTTAACAAATAGTT+TGG - chr4_1:52114848-52114867 None:intergenic 15.0%
!! CAAATATTCATAATATATGT+CGG + chr4_1:52114902-52114921 Msa0554660:intron 15.0%
!! AAATAAACTACAAAATTAAC+CGG + chr4_1:52115915-52115934 Msa0554660:intron 15.0%
!! CAAATGTATCAAAATATTAA+AGG + chr4_1:52116641-52116660 Msa0554660:intron 15.0%
!!! AAACATACATTTTGTATAAT+AGG - chr4_1:52117409-52117428 None:intergenic 15.0%
!! AAAATATTATTACTTGATTG+CGG - chr4_1:52117624-52117643 None:intergenic 15.0%
!!! ATTTATGAATTTTCATTTAC+AGG + chr4_1:52117795-52117814 Msa0554660:intron 15.0%
!!! TTTATGAATTTTCATTTACA+GGG + chr4_1:52117796-52117815 Msa0554660:intron 15.0%
!!! AAGATTAACAACTTTTATTT+AGG - chr4_1:52118036-52118055 None:intergenic 15.0%
!! AAAATTAAACTGATATATGA+AGG - chr4_1:52118128-52118147 None:intergenic 15.0%
!! CAAAATTGGTTAACATTATT+TGG - chr4_1:52111733-52111752 None:intergenic 20.0%
!!! AATAATGTTAACCAATTTTG+AGG + chr4_1:52111733-52111752 Msa0554660:intron 20.0%
!!! TGATTTAGAAAAGCTTTTAT+TGG + chr4_1:52111766-52111785 Msa0554660:intron 20.0%
!! AACTAGAAATTGAAATTAAC+TGG - chr4_1:52112155-52112174 None:intergenic 20.0%
!!! CATTTAAAACTTGTTAATCA+TGG + chr4_1:52112246-52112265 Msa0554660:intron 20.0%
!! GCATAATATCTTAATCTTAA+AGG - chr4_1:52112336-52112355 None:intergenic 20.0%
!!! TTTTTTTTTTTACCAGTAGT+AGG + chr4_1:52112491-52112510 Msa0554660:intron 20.0%
!! TGATTTATGTATATCAAACT+TGG - chr4_1:52112899-52112918 None:intergenic 20.0%
!! AGATAATCTATTTAAATGGA+GGG - chr4_1:52113112-52113131 None:intergenic 20.0%
!! AAGATAATCTATTTAAATGG+AGG - chr4_1:52113113-52113132 None:intergenic 20.0%
!! AATTCCTATTTAATATAGGA+CGG - chr4_1:52113412-52113431 None:intergenic 20.0%
!!! ATCATTAATCAATTTGAAGT+GGG - chr4_1:52113774-52113793 None:intergenic 20.0%
!! TATCATTAATCAATTTGAAG+TGG - chr4_1:52113775-52113794 None:intergenic 20.0%
!!! TTGTTGGTAATAAAAAACAA+TGG + chr4_1:52113848-52113867 Msa0554660:intron 20.0%
!! AACAAATGACTAATCAAATT+TGG - chr4_1:52113999-52114018 None:intergenic 20.0%
!!! TTTGATTAGTCATTTGTTAT+CGG + chr4_1:52114001-52114020 Msa0554660:intron 20.0%
!!! TATGCTTACATTTTTTTTGA+AGG - chr4_1:52114093-52114112 None:intergenic 20.0%
!! TCAAAATAATAAGATTGCAT+TGG + chr4_1:52114290-52114309 Msa0554660:intron 20.0%
!! TTAACACATGTAATATGAAT+TGG + chr4_1:52114394-52114413 Msa0554660:intron 20.0%
!!! ATTTCATTCCATTTTTTTTG+AGG + chr4_1:52114444-52114463 Msa0554660:intron 20.0%
!!! TTTCATTCCATTTTTTTTGA+GGG + chr4_1:52114445-52114464 Msa0554660:intron 20.0%
!!! TTAACATAATATTTTCTGGT+TGG + chr4_1:52114651-52114670 Msa0554660:intron 20.0%
!! AAAAGTGATGATAAAATTGT+TGG - chr4_1:52114696-52114715 None:intergenic 20.0%
!! TTTACTTCATAAAAATAGAG+GGG + chr4_1:52114728-52114747 Msa0554660:intron 20.0%
!! ATGGTAACATTCAAAATTTA+CGG + chr4_1:52114821-52114840 Msa0554660:intron 20.0%
!! ATGTGTAGATGATTATAATT+TGG + chr4_1:52115075-52115094 Msa0554660:intron 20.0%
!!! TCCTTGTTTTTAAACAAATT+TGG + chr4_1:52115395-52115414 Msa0554660:intron 20.0%
!!! TCCAAATTTGTTTAAAAACA+AGG - chr4_1:52115399-52115418 None:intergenic 20.0%
!! TAATTAATTACCATCCAAAT+TGG - chr4_1:52115579-52115598 None:intergenic 20.0%
!! CAAAAAAAAAATGATGCATT+GGG + chr4_1:52115812-52115831 Msa0554660:intron 20.0%
!!! ATAAAGACACTTTTTTTTTG+TGG + chr4_1:52115865-52115884 Msa0554660:intron 20.0%
!!! TTTGTAGTTTATTTTCACTT+GGG - chr4_1:52115909-52115928 None:intergenic 20.0%
!!! TTTTGTAGTTTATTTTCACT+TGG - chr4_1:52115910-52115929 None:intergenic 20.0%
!!! ATCATTTGATTTGATTGTTT+TGG - chr4_1:52116011-52116030 None:intergenic 20.0%
!!! TAATTTTAGTTCATCTTATC+AGG - chr4_1:52116131-52116150 None:intergenic 20.0%
!!! TTAAATGTATGTATGGATTT+TGG - chr4_1:52116593-52116612 None:intergenic 20.0%
!!! AATGGTTCATTTGATTTTAT+TGG + chr4_1:52116814-52116833 Msa0554660:CDS 20.0%
!!! ATATTCTTTCAAATTAGTCT+AGG - chr4_1:52117487-52117506 None:intergenic 20.0%
!! CTATGATCATATATATTAGT+TGG + chr4_1:52118101-52118120 Msa0554660:three_prime_UTR 20.0%
! CAACAAAATATGTACATACT+TGG - chr4_1:52111463-52111482 None:intergenic 25.0%
!! AAAAATCGTGAAACGATTTT+AGG - chr4_1:52111643-52111662 None:intergenic 25.0%
!!! GTTACATGATTTTAGAATCA+TGG - chr4_1:52111702-52111721 None:intergenic 25.0%
!! AAAAGTTTTTGCCTCAAAAT+TGG - chr4_1:52111747-52111766 None:intergenic 25.0%
!! TTAGAAAAGCTTTTATTGGT+TGG + chr4_1:52111770-52111789 Msa0554660:intron 25.0%
! AATTCACGAGTTTAATTACA+AGG - chr4_1:52111831-52111850 None:intergenic 25.0%
! ACATACAAAATGTTAATGAG+AGG + chr4_1:52111851-52111870 Msa0554660:intron 25.0%
! CAAACATGTATATAGTTTGA+AGG + chr4_1:52111974-52111993 Msa0554660:intron 25.0%
! ATATCTTAATCTTAAAGGAG+AGG - chr4_1:52112331-52112350 None:intergenic 25.0%
!! TTTTAATAGCCATAGTATGT+AGG + chr4_1:52112460-52112479 Msa0554660:intron 25.0%
!!! TTGTTTTTTGTTGAAGAATC+CGG + chr4_1:52112534-52112553 Msa0554660:intron 25.0%
!!! TCGTCTTTTAAGAAAATATC+CGG + chr4_1:52112680-52112699 Msa0554660:intron 25.0%
!! TTTAAAGAATTTTGCTCTAC+CGG - chr4_1:52112702-52112721 None:intergenic 25.0%
! TATATCAAACTTGTATAGCA+TGG - chr4_1:52112802-52112821 None:intergenic 25.0%
!!! ACTTTTTTCTCAATGACAAA+AGG + chr4_1:52112926-52112945 Msa0554660:intron 25.0%
! ACATGTTTAATCAAAACATC+TGG - chr4_1:52113186-52113205 None:intergenic 25.0%
! AATGTAGAAAAAATAAGGGA+TGG + chr4_1:52113334-52113353 Msa0554660:intron 25.0%
! TGGTGCCTATAATAATAAAT+AGG + chr4_1:52113488-52113507 Msa0554660:intron 25.0%
! TATTGTAAAGTGATAAAAGG+TGG - chr4_1:52113564-52113583 None:intergenic 25.0%
!! TCATTAATCAATTTGAAGTG+GGG - chr4_1:52113773-52113792 None:intergenic 25.0%
! AACAAAAAGAGAAACATTGA+AGG - chr4_1:52113833-52113852 None:intergenic 25.0%
!! TTCAATGTTTCTCTTTTTGT+TGG + chr4_1:52113832-52113851 Msa0554660:intron 25.0%
! GAGTACCTAAAATAAATTGT+AGG + chr4_1:52114036-52114055 Msa0554660:intron 25.0%
! ATGTAAGCATACACTATTAA+TGG + chr4_1:52114102-52114121 Msa0554660:intron 25.0%
! TGAAATTCCCTCAAAAAAAA+TGG - chr4_1:52114455-52114474 None:intergenic 25.0%
!!! GATCAAATTTTGACTTACTT+GGG - chr4_1:52114620-52114639 None:intergenic 25.0%
!!! TGATCAAATTTTGACTTACT+TGG - chr4_1:52114621-52114640 None:intergenic 25.0%
!! ATATATGTCGGTGAAATTTT+AGG + chr4_1:52114914-52114933 Msa0554660:intron 25.0%
!!! ATTCGTAACTCTTTTTCATT+GGG + chr4_1:52114946-52114965 Msa0554660:CDS 25.0%
! TAGGCAAATGATATTTGAAA+TGG - chr4_1:52115035-52115054 None:intergenic 25.0%
!!! CCAATGCATCATTTTTTTTT+TGG - chr4_1:52115814-52115833 None:intergenic 25.0%
! CCAAAAAAAAAATGATGCAT+TGG + chr4_1:52115811-52115830 Msa0554660:intron 25.0%
!!! TTTTTTTGTGGTACAAAAAG+AGG + chr4_1:52115877-52115896 Msa0554660:intron 25.0%
!!! TTTTTTGTGGTACAAAAAGA+GGG + chr4_1:52115878-52115897 Msa0554660:intron 25.0%
! AGATATTGAAGAATACTACT+TGG - chr4_1:52116484-52116503 None:intergenic 25.0%
!!! TCAATATCTCTAAAACACTT+TGG + chr4_1:52116495-52116514 Msa0554660:intron 25.0%
!! GAAGTGTTTAAATGTATGTA+TGG - chr4_1:52116600-52116619 None:intergenic 25.0%
! CATACATTTAAACACTTCAT+AGG + chr4_1:52116602-52116621 Msa0554660:intron 25.0%
! TTTAAACACTTCATAGGTTA+AGG + chr4_1:52116608-52116627 Msa0554660:intron 25.0%
!! TTGTTTGATTGGTTAATTTC+AGG + chr4_1:52116692-52116711 Msa0554660:intron 25.0%
!!! ATTGGTTAATTTCAGGTTTA+TGG + chr4_1:52116699-52116718 Msa0554660:intron 25.0%
!! TTACATGAAGTATTAGTCAT+AGG - chr4_1:52116916-52116935 None:intergenic 25.0%
! TATGACTAATACTTCATGTA+AGG + chr4_1:52116915-52116934 Msa0554660:intron 25.0%
! TTAAAGCAACTAATTAACAC+AGG - chr4_1:52116965-52116984 None:intergenic 25.0%
!!! AGATCTTTTGTTATACACTA+AGG + chr4_1:52117287-52117306 Msa0554660:CDS 25.0%
!! TTTCAAATTAGTCTAGGATA+AGG - chr4_1:52117481-52117500 None:intergenic 25.0%
! AGAATATGTATGATATGTAC+AGG + chr4_1:52117500-52117519 Msa0554660:intron 25.0%
! AACTTTGTAGATTACAATGA+TGG + chr4_1:52117905-52117924 Msa0554660:CDS 25.0%
!!! ATTACAATGATGGATTGAAA+AGG + chr4_1:52117915-52117934 Msa0554660:CDS 25.0%
!!! TTTTATTTAGGTGCTGAATT+TGG - chr4_1:52118024-52118043 None:intergenic 25.0%
! ATTCATTGGCTATTTCAATG+TGG + chr4_1:52111295-52111314 Msa0554660:CDS 30.0%
CTGTATAGAGTAATTCTTCT+TGG + chr4_1:52111512-52111531 Msa0554660:intron 30.0%
! CACTAGTTTAAGCACTATTA+AGG - chr4_1:52111548-52111567 None:intergenic 30.0%
AAAAAAACCTGGATGTTGAT+GGG - chr4_1:52112047-52112066 None:intergenic 30.0%
AAAAAAAACCTGGATGTTGA+TGG - chr4_1:52112048-52112067 None:intergenic 30.0%
CTAACATACAGAGAAAACAA+AGG + chr4_1:52112111-52112130 Msa0554660:intron 30.0%
! TATTTTATTGCAAGTCGGTT+AGG - chr4_1:52112283-52112302 None:intergenic 30.0%
!!! CATTTACGAACTTTTCAAGT+AGG - chr4_1:52112382-52112401 None:intergenic 30.0%
ACAAACAAACCTACATACTA+TGG - chr4_1:52112472-52112491 None:intergenic 30.0%
!!! TTTTTTTACCAGTAGTAGGT+AGG + chr4_1:52112495-52112514 Msa0554660:intron 30.0%
TATTAAAGTTAAGCACTCCA+CGG + chr4_1:52112862-52112881 Msa0554660:intron 30.0%
! ACTTAGCATATTTTATGCCA+TGG - chr4_1:52112982-52113001 None:intergenic 30.0%
CATAAAATATGCTAAGTGTG+AGG + chr4_1:52112985-52113004 Msa0554660:intron 30.0%
TTAATCAAAACATCTGGCAT+AGG - chr4_1:52113180-52113199 None:intergenic 30.0%
ATTATCCTTAGTCGTGAAAT+AGG + chr4_1:52113432-52113451 Msa0554660:intron 30.0%
AATGATAACTTAAGGGAAGT+TGG + chr4_1:52113468-52113487 Msa0554660:intron 30.0%
TTTCTTTAACTAGGTTTCCA+GGG + chr4_1:52113601-52113620 Msa0554660:intron 30.0%
!! GTCATTCAACTCTTTAAAGT+CGG - chr4_1:52113750-52113769 None:intergenic 30.0%
! CATTAATCAATTTGAAGTGG+GGG - chr4_1:52113772-52113791 None:intergenic 30.0%
TTATTACTACAGGAAGATGT+TGG + chr4_1:52114534-52114553 Msa0554660:intron 30.0%
TATTACTACAGGAAGATGTT+GGG + chr4_1:52114535-52114554 Msa0554660:intron 30.0%
GATTATGAAGGATCAGAATA+TGG + chr4_1:52114557-52114576 Msa0554660:CDS 30.0%
CAATGAAAAAGAGTTACGAA+TGG - chr4_1:52114947-52114966 None:intergenic 30.0%
!! CATTCGTAACTCTTTTTCAT+TGG + chr4_1:52114945-52114964 Msa0554660:CDS 30.0%
TGTGTATAAGATCAAGTATC+AGG + chr4_1:52115335-52115354 Msa0554660:CDS 30.0%
TTAAAAACAAGGACTAGAGA+CGG - chr4_1:52115388-52115407 None:intergenic 30.0%
TTAAAGTTACATAAGTGTGC+AGG + chr4_1:52115447-52115466 Msa0554660:intron 30.0%
! GCATAACATTGGTAACAAAT+TGG + chr4_1:52115491-52115510 Msa0554660:CDS 30.0%
TATCAGGAAACTACTGAAAA+TGG - chr4_1:52116115-52116134 None:intergenic 30.0%
! CTGACAAGTTCAAGTTTAAT+GGG - chr4_1:52116155-52116174 None:intergenic 30.0%
! TCTGACAAGTTCAAGTTTAA+TGG - chr4_1:52116156-52116175 None:intergenic 30.0%
!! GCATTTTGATCATCTTATAG+TGG - chr4_1:52116211-52116230 None:intergenic 30.0%
ATTTAGTGAACTTAGGCAAT+CGG - chr4_1:52116777-52116796 None:intergenic 30.0%
GATTGCAATTTAGTGAACTT+AGG - chr4_1:52116784-52116803 None:intergenic 30.0%
ATAGGATCTGTTAAGTAACT+TGG - chr4_1:52116898-52116917 None:intergenic 30.0%
ACAATTGCAGTTGAACAAAA+TGG + chr4_1:52117037-52117056 Msa0554660:intron 30.0%
!! ATTTTTCGCATGGTCATTTT+TGG + chr4_1:52117838-52117857 Msa0554660:CDS 30.0%
!! CATTTTTGGACTGTAATGAA+TGG + chr4_1:52117852-52117871 Msa0554660:CDS 30.0%
ATATATATGATCATAGCTGC+TGG - chr4_1:52118097-52118116 None:intergenic 30.0%
! TTTGAAGGTGCAGTAAAGAA+AGG + chr4_1:52111989-52112008 Msa0554660:CDS 35.0%
AATCTTAAAGGAGAGGAGTT+AGG - chr4_1:52112324-52112343 None:intergenic 35.0%
AAAAGAAACCTACCTACTAC+TGG - chr4_1:52112506-52112525 None:intergenic 35.0%
AAAGTTAATAAGCACCACCA+TGG + chr4_1:52112962-52112981 Msa0554660:intron 35.0%
! TAGCATATTTTATGCCATGG+TGG - chr4_1:52112979-52112998 None:intergenic 35.0%
CTATTTAAATGGAGGGTCTA+TGG - chr4_1:52113105-52113124 None:intergenic 35.0%
TAGGTTGTTCGTATGGAAAT+TGG - chr4_1:52113161-52113180 None:intergenic 35.0%
AGCTCCGTCCTATATTAAAT+AGG + chr4_1:52113405-52113424 Msa0554660:intron 35.0%
TTTCTCCTATTTCACGACTA+AGG - chr4_1:52113440-52113459 None:intergenic 35.0%
GTTTCTTTAACTAGGTTTCC+AGG + chr4_1:52113600-52113619 Msa0554660:intron 35.0%
! ATCAACGAATTGTTGGCTAA+TGG + chr4_1:52114802-52114821 Msa0554660:CDS 35.0%
!! ATACTCGTCTTCTAAGACTT+GGG - chr4_1:52114978-52114997 None:intergenic 35.0%
GATCTTTGCTTCAAGGAATT+CGG + chr4_1:52115132-52115151 Msa0554660:CDS 35.0%
AATTACCACCCAAACATGTT+GGG - chr4_1:52115254-52115273 None:intergenic 35.0%
! ACAAATTGGTTCATACCACT+TGG + chr4_1:52115505-52115524 Msa0554660:CDS 35.0%
AGATCACTTGACTTCCAATT+TGG + chr4_1:52115562-52115581 Msa0554660:CDS 35.0%
!! TCTAATACACCGATTCCATT+TGG + chr4_1:52115683-52115702 Msa0554660:intron 35.0%
AGAGTGTATCCAAATGGAAT+CGG - chr4_1:52115695-52115714 None:intergenic 35.0%
TCCATTTGGATACACTCTTT+CGG + chr4_1:52115697-52115716 Msa0554660:intron 35.0%
TTCAGAGGTGAAGAAAATGA+TGG - chr4_1:52115734-52115753 None:intergenic 35.0%
!! TTTCTTCACCTCTGAAACAA+AGG + chr4_1:52115738-52115757 Msa0554660:intron 35.0%
! CTTCATATCCTTTGTTTCAG+AGG - chr4_1:52115749-52115768 None:intergenic 35.0%
AACCAATGCATCATTTCGAA+TGG - chr4_1:52115788-52115807 None:intergenic 35.0%
!!! ACGAGAGTTTTAGAAATTGC+TGG + chr4_1:52115840-52115859 Msa0554660:intron 35.0%
AAAATTAACCGGACATTCCT+AGG + chr4_1:52115926-52115945 Msa0554660:intron 35.0%
!! AAGGAAATAGAAGTGCCAAT+TGG - chr4_1:52116059-52116078 None:intergenic 35.0%
GTTGTATTTGGGTATAGAGA+TGG - chr4_1:52116244-52116263 None:intergenic 35.0%
AAAGGCTACACTAAGAAGAT+TGG - chr4_1:52116300-52116319 None:intergenic 35.0%
!! GCAGATGGTAAATGGATTAA+AGG - chr4_1:52116318-52116337 None:intergenic 35.0%
TTTGTGATGCAGATGGTAAA+TGG - chr4_1:52116326-52116345 None:intergenic 35.0%
!!! GGTATTTTTTGTGATGCAGA+TGG - chr4_1:52116333-52116352 None:intergenic 35.0%
ACAAAAAATACCACCACAAC+TGG + chr4_1:52116341-52116360 Msa0554660:intron 35.0%
GTGAAGGACACTATTTACAT+AGG - chr4_1:52116438-52116457 None:intergenic 35.0%
TAAATAGTGTCCTTCACCTT+AGG + chr4_1:52116441-52116460 Msa0554660:intron 35.0%
TTTATGGAACCTCTAACAAC+CGG + chr4_1:52116715-52116734 Msa0554660:CDS 35.0%
!!! CATGCTTTTAGGATAATCTC+CGG - chr4_1:52116737-52116756 None:intergenic 35.0%
TTGCAATCAAAGCTAGTGAA+TGG + chr4_1:52116796-52116815 Msa0554660:CDS 35.0%
ATTAACCATTTACCTCCACA+AGG + chr4_1:52116862-52116881 Msa0554660:CDS 35.0%
GAACAAAATGGAAAACCTCT+AGG + chr4_1:52117049-52117068 Msa0554660:CDS 35.0%
TTGTATAGGCTGCTTCAATT+TGG + chr4_1:52117238-52117257 Msa0554660:intron 35.0%
TGGATATACGTTTATCCAAG+AGG + chr4_1:52117258-52117277 Msa0554660:CDS 35.0%
! TTTTCAGTAATGTAGACCAC+AGG - chr4_1:52117327-52117346 None:intergenic 35.0%
GTGGTCTACATTACTGAAAA+TGG + chr4_1:52117327-52117346 Msa0554660:CDS 35.0%
TTCTTGAATGCCATCATAAC+TGG + chr4_1:52117377-52117396 Msa0554660:intron 35.0%
TAGGATTGTTCCAGTTATGA+TGG - chr4_1:52117390-52117409 None:intergenic 35.0%
! TTCTGTAGAAGAAGCTCTTT+TGG + chr4_1:52117550-52117569 Msa0554660:CDS 35.0%
! TGAATTTTCATTTACAGGGC+CGG + chr4_1:52117800-52117819 Msa0554660:intron 35.0%
! ATGTAAAGGGATTTTTCGCA+TGG + chr4_1:52117828-52117847 Msa0554660:CDS 35.0%
! AGTCCTATATTGTTTGAAGC+TGG + chr4_1:52117987-52118006 Msa0554660:exon 35.0%
AACAACAAAGAGAGCAAGCA+TGG - chr4_1:52111321-52111340 None:intergenic 40.0%
GTCACACTTACTTTCGCAAA+CGG + chr4_1:52111347-52111366 Msa0554660:CDS 40.0%
GTTTCAACTCCTCTTGACAT+CGG + chr4_1:52111377-52111396 Msa0554660:CDS 40.0%
CTCTATACAGTTGCGTGAAT+AGG - chr4_1:52111502-52111521 None:intergenic 40.0%
ATGGCACGATGATAGAATGT+GGG - chr4_1:52111683-52111702 None:intergenic 40.0%
TTGTTGAAGAATCCGGTAGT+AGG + chr4_1:52112541-52112560 Msa0554660:intron 40.0%
TATACCAACCTACCTACTAC+CGG - chr4_1:52112556-52112575 None:intergenic 40.0%
! ACTTGGCATATTTTATGCCG+TGG - chr4_1:52112882-52112901 None:intergenic 40.0%
TGACCAATACCATCGCTATA+AGG + chr4_1:52113378-52113397 Msa0554660:CDS 40.0%
GTACCTTATAGCGATGGTAT+TGG - chr4_1:52113384-52113403 None:intergenic 40.0%
TTGTTATCGGATCACTCTCT+AGG + chr4_1:52114014-52114033 Msa0554660:intron 40.0%
GGAAGATGTTGGGATTATGA+AGG + chr4_1:52114545-52114564 Msa0554660:intron 40.0%
CCAAGCGATTGAGAATCTAT+AGG - chr4_1:52114586-52114605 None:intergenic 40.0%
CCTATAGATTCTCAATCGCT+TGG + chr4_1:52114583-52114602 Msa0554660:CDS 40.0%
!! GACTTACTTGGGAGTATTCT+TGG - chr4_1:52114609-52114628 None:intergenic 40.0%
AAAATAGAGGGGAAGTTGAG+TGG + chr4_1:52114739-52114758 Msa0554660:intron 40.0%
! AGTGGAGGCATAAATCATGA+AGG + chr4_1:52114757-52114776 Msa0554660:CDS 40.0%
CAACCTCATCAACGAATTGT+TGG + chr4_1:52114795-52114814 Msa0554660:CDS 40.0%
TAGCCAACAATTCGTTGATG+AGG - chr4_1:52114801-52114820 None:intergenic 40.0%
!! TACTCGTCTTCTAAGACTTG+GGG - chr4_1:52114977-52114996 None:intergenic 40.0%
!! CATACTCGTCTTCTAAGACT+TGG - chr4_1:52114979-52114998 None:intergenic 40.0%
CAAGTCTTAGAAGACGAGTA+TGG + chr4_1:52114977-52114996 Msa0554660:CDS 40.0%
CTATGCTGATCTTTGCTTCA+AGG + chr4_1:52115125-52115144 Msa0554660:CDS 40.0%
!! TAGCAATGGTGGATATGCAA+TGG + chr4_1:52115200-52115219 Msa0554660:CDS 40.0%
!! AGCAATGGTGGATATGCAAT+GGG + chr4_1:52115201-52115220 Msa0554660:CDS 40.0%
ATGTTCTAGCCCAACATGTT+TGG + chr4_1:52115242-52115261 Msa0554660:CDS 40.0%
TGTTCTAGCCCAACATGTTT+GGG + chr4_1:52115243-52115262 Msa0554660:CDS 40.0%
GAATTACCACCCAAACATGT+TGG - chr4_1:52115255-52115274 None:intergenic 40.0%
ACATGTTTGGGTGGTAATTC+TGG + chr4_1:52115255-52115274 Msa0554660:CDS 40.0%
AAGTGTGCAGGCATATCAAA+AGG + chr4_1:52115459-52115478 Msa0554660:intron 40.0%
AGTGTGCAGGCATATCAAAA+GGG + chr4_1:52115460-52115479 Msa0554660:intron 40.0%
GCATATCAAAAGGGCAAGAT+AGG + chr4_1:52115469-52115488 Msa0554660:CDS 40.0%
GGTATGCTATTGTTTCCAAG+TGG - chr4_1:52115523-52115542 None:intergenic 40.0%
CAATAGCATACCCGATCAAA+AGG + chr4_1:52115531-52115550 Msa0554660:CDS 40.0%
TTGGAAGTCAAGTGATCTCT+TGG - chr4_1:52115560-52115579 None:intergenic 40.0%
CACTTGACTTCCAATTTGGA+TGG + chr4_1:52115566-52115585 Msa0554660:CDS 40.0%
GGTGTATTAGAGATGGTAGT+GGG - chr4_1:52115674-52115693 None:intergenic 40.0%
TGGAATCGGTGTATTAGAGA+TGG - chr4_1:52115681-52115700 None:intergenic 40.0%
! TCCGAAAGAGTGTATCCAAA+TGG - chr4_1:52115701-52115720 None:intergenic 40.0%
TTTGGATACACTCTTTCGGA+CGG + chr4_1:52115701-52115720 Msa0554660:intron 40.0%
GTCCATTCGAAATGATGCAT+TGG + chr4_1:52115783-52115802 Msa0554660:intron 40.0%
! CATGTTTGATGATATGTCCG+AGG - chr4_1:52115960-52115979 None:intergenic 40.0%
!!! CATGAACTTTTGAAGCTCAG+TGG + chr4_1:52115976-52115995 Msa0554660:intron 40.0%
GCTAAAACTAGCAAGCCAAT+TGG + chr4_1:52116041-52116060 Msa0554660:intron 40.0%
TATTTCCTTCGCGCAAAGTA+TGG + chr4_1:52116070-52116089 Msa0554660:intron 40.0%
ATTTGGGTATAGAGATGGCT+TGG - chr4_1:52116239-52116258 None:intergenic 40.0%
AATACGACCCATATCCTTGT+AGG + chr4_1:52116365-52116384 Msa0554660:intron 40.0%
AACTTCATCCTACCTTCTTG+AGG + chr4_1:52116402-52116421 Msa0554660:intron 40.0%
!! ACTATGGCTTGCATGCTTTT+AGG - chr4_1:52116748-52116767 None:intergenic 40.0%
!! AGGCAATCGGTTTTTCACTA+TGG - chr4_1:52116764-52116783 None:intergenic 40.0%
GGATCTGTTAAGTAACTTGG+AGG - chr4_1:52116895-52116914 None:intergenic 40.0%
AGTTACTAGAGACTTACCCT+TGG - chr4_1:52117076-52117095 None:intergenic 40.0%
AAAAGATCTCGAAGTCCTCT+TGG - chr4_1:52117276-52117295 None:intergenic 40.0%
GGAGAAATACAACAATCCTG+TGG + chr4_1:52117308-52117327 Msa0554660:CDS 40.0%
AAATCCCTTTACATTCGAGC+CGG - chr4_1:52117822-52117841 None:intergenic 40.0%
!! GACTGTAATGAATGGATTGC+AGG + chr4_1:52117860-52117879 Msa0554660:CDS 40.0%
ACCATTGAGCAGAAAGCTTT+GGG - chr4_1:52117943-52117962 None:intergenic 40.0%
TACCATTGAGCAGAAAGCTT+TGG - chr4_1:52117944-52117963 None:intergenic 40.0%
GCACCAGCTTCAAACAATAT+AGG - chr4_1:52117993-52118012 None:intergenic 40.0%
TTTCCACGTGGCTTCATCTT+TGG + chr4_1:52111419-52111438 Msa0554660:CDS 45.0%
TTCCACGTGGCTTCATCTTT+GGG + chr4_1:52111420-52111439 Msa0554660:CDS 45.0%
CATGGCACGATGATAGAATG+TGG - chr4_1:52111684-52111703 None:intergenic 45.0%
! GAAGGTGCAGTAAAGAAAGG+TGG + chr4_1:52111992-52112011 Msa0554660:CDS 45.0%
GCAGTAAAGAAAGGTGGTAG+AGG + chr4_1:52111998-52112017 Msa0554660:CDS 45.0%
TGGTAGAGGACCAAGTATCT+GGG + chr4_1:52112012-52112031 Msa0554660:CDS 45.0%
GAGAGGAGTTAGGTCTCAAA+AGG - chr4_1:52112314-52112333 None:intergenic 45.0%
TGAAGAATCCGGTAGTAGGT+AGG + chr4_1:52112545-52112564 Msa0554660:intron 45.0%
TCTGGCATAGGTTGTTCGTA+TGG - chr4_1:52113168-52113187 None:intergenic 45.0%
GAGCTAGTACCTTATAGCGA+TGG - chr4_1:52113390-52113409 None:intergenic 45.0%
GTCTTAGAAGACGAGTATGG+TGG + chr4_1:52114980-52114999 Msa0554660:CDS 45.0%
GAATCGCTATTCGCTATGCT+AGG - chr4_1:52115054-52115073 None:intergenic 45.0%
TCGGAGATAGAGTGAAGTAC+TGG + chr4_1:52115151-52115170 Msa0554660:CDS 45.0%
! CGGAGATAGAGTGAAGTACT+GGG + chr4_1:52115152-52115171 Msa0554660:CDS 45.0%
GGGTTACATTTAACGAGCCA+TGG + chr4_1:52115172-52115191 Msa0554660:CDS 45.0%
GAGCCATGGTTGTTTAGCAA+TGG + chr4_1:52115186-52115205 Msa0554660:CDS 45.0%
CCACCATTGCTAAACAACCA+TGG - chr4_1:52115192-52115211 None:intergenic 45.0%
CCATGGTTGTTTAGCAATGG+TGG + chr4_1:52115189-52115208 Msa0554660:CDS 45.0%
GGGCAAGATAGGCATAACAT+TGG + chr4_1:52115480-52115499 Msa0554660:CDS 45.0%
! TCTCTTGGCAGCCTTTTGAT+CGG - chr4_1:52115545-52115564 None:intergenic 45.0%
! GTAGTGGGATGTAGCTTTCA+TGG - chr4_1:52115659-52115678 None:intergenic 45.0%
CGGTGTATTAGAGATGGTAG+TGG - chr4_1:52115675-52115694 None:intergenic 45.0%
TTTGCATGCCTAGGAATGTC+CGG - chr4_1:52115937-52115956 None:intergenic 45.0%
ATTCCTAGGCATGCAAACCT+CGG + chr4_1:52115940-52115959 Msa0554660:intron 45.0%
!!! AACTTTTGAAGCTCAGTGGC+TGG + chr4_1:52115980-52115999 Msa0554660:intron 45.0%
ATCAACCATACTTTGCGCGA+AGG - chr4_1:52116078-52116097 None:intergenic 45.0%
GAGATGTGGGGGTTGTATTT+GGG - chr4_1:52116255-52116274 None:intergenic 45.0%
TGAGATGTGGGGGTTGTATT+TGG - chr4_1:52116256-52116275 None:intergenic 45.0%
TGCCTTACATGCTGAGATGT+GGG - chr4_1:52116268-52116287 None:intergenic 45.0%
ATGCCTTACATGCTGAGATG+TGG - chr4_1:52116269-52116288 None:intergenic 45.0%
ATGGGTCGTATTTCCAGTTG+TGG - chr4_1:52116357-52116376 None:intergenic 45.0%
GACAGTGCCTACAAGGATAT+GGG - chr4_1:52116375-52116394 None:intergenic 45.0%
AGAAACGACCTCAAGAAGGT+AGG - chr4_1:52116413-52116432 None:intergenic 45.0%
GGATAGAAACGACCTCAAGA+AGG - chr4_1:52116417-52116436 None:intergenic 45.0%
! ACTTGGAGCACCTTCATAGA+GGG - chr4_1:52116467-52116486 None:intergenic 45.0%
! TACTTGGAGCACCTTCATAG+AGG - chr4_1:52116468-52116487 None:intergenic 45.0%
TTCATAGGTTAAGGTGCGCA+AGG + chr4_1:52116617-52116636 Msa0554660:intron 45.0%
GGATAATCTCCGGTTGTTAG+AGG - chr4_1:52116727-52116746 None:intergenic 45.0%
CATTGCCTTGTGGAGGTAAA+TGG - chr4_1:52116870-52116889 None:intergenic 45.0%
ATGGAAAACCTCTAGGTCCA+AGG + chr4_1:52117056-52117075 Msa0554660:CDS 45.0%
TGGAAAACCTCTAGGTCCAA+GGG + chr4_1:52117057-52117076 Msa0554660:CDS 45.0%
! GCAGGCTTTACTGTTCGTTT+TGG + chr4_1:52117878-52117897 Msa0554660:CDS 45.0%
ACCCAAAGCTTTCTGCTCAA+TGG + chr4_1:52117939-52117958 Msa0554660:CDS 45.0%
TGATCATAGCTGCTGGTACA+AGG - chr4_1:52118090-52118109 None:intergenic 45.0%
!!! AAAATTCTTTAAAAATAAAT+TGG + chr4_1:52112709-52112728 Msa0554660:intron 5.0%
!! ACTTTATATTATATATAATT+TGG - chr4_1:52113965-52113984 None:intergenic 5.0%
!! AAAAATATATATATATTAGA+TGG - chr4_1:52117694-52117713 None:intergenic 5.0%
TTGACATCGGCAACCTGAGT+CGG + chr4_1:52111390-52111409 Msa0554660:CDS 50.0%
GTGGAAAACTACTCCGACTC+AGG - chr4_1:52111406-52111425 None:intergenic 50.0%
! AGTCGGAGTAGTTTTCCACG+TGG + chr4_1:52111407-52111426 Msa0554660:CDS 50.0%
TCCACGTGGCTTCATCTTTG+GGG + chr4_1:52111421-52111440 Msa0554660:CDS 50.0%
GTGGTAGAGGACCAAGTATC+TGG + chr4_1:52112011-52112030 Msa0554660:CDS 50.0%
!! GTGAAGGTGTCCCAGATACT+TGG - chr4_1:52112025-52112044 None:intergenic 50.0%
ACCTTCACCCATCAACATCC+AGG + chr4_1:52112037-52112056 Msa0554660:CDS 50.0%
! ACCTGGATGTTGATGGGTGA+AGG - chr4_1:52112041-52112060 None:intergenic 50.0%
GAATCCGGTAGTAGGTAGGT+TGG + chr4_1:52112549-52112568 Msa0554660:intron 50.0%
ATAGAGGGGAAGTTGAGTGG+AGG + chr4_1:52114742-52114761 Msa0554660:intron 50.0%
TCTAGCCCAACATGTTTGGG+TGG + chr4_1:52115246-52115265 Msa0554660:CDS 50.0%
! CTCTTGGCAGCCTTTTGATC+GGG - chr4_1:52115544-52115563 None:intergenic 50.0%
! GGGTATAGAGATGGCTTGGA+GGG - chr4_1:52116235-52116254 None:intergenic 50.0%
! TGGGTATAGAGATGGCTTGG+AGG - chr4_1:52116236-52116255 None:intergenic 50.0%
CCTTACATGCTGAGATGTGG+GGG - chr4_1:52116266-52116285 None:intergenic 50.0%
GCCTTACATGCTGAGATGTG+GGG - chr4_1:52116267-52116286 None:intergenic 50.0%
GGTCGTATTTCCAGTTGTGG+TGG - chr4_1:52116354-52116373 None:intergenic 50.0%
CGACAGTGCCTACAAGGATA+TGG - chr4_1:52116376-52116395 None:intergenic 50.0%
CAATAGCGACAGTGCCTACA+AGG - chr4_1:52116382-52116401 None:intergenic 50.0%
TCATAGAGGGCCTAAGGTGA+AGG - chr4_1:52116454-52116473 None:intergenic 50.0%
TCACCTTAGGCCCTCTATGA+AGG + chr4_1:52116454-52116473 Msa0554660:intron 50.0%
AGACTTACCCTTGGACCTAG+AGG - chr4_1:52117067-52117086 None:intergenic 50.0%
! CTCAGGTTGCCGATGTCAAG+AGG - chr4_1:52111389-52111408 None:intergenic 55.0%
! ACGTGGCTTCATCTTTGGGG+CGG + chr4_1:52111424-52111443 Msa0554660:CDS 55.0%
GCAATGGGAACAACAGCACC+AGG + chr4_1:52115216-52115235 Msa0554660:CDS 55.0%
! GTTGGGCTAGAACATCGACC+TGG - chr4_1:52115237-52115256 None:intergenic 55.0%
TGTCCGAGGTTTGCATGCCT+AGG - chr4_1:52115946-52115965 None:intergenic 55.0%
CCCCCACATCTCAGCATGTA+AGG + chr4_1:52116263-52116282 Msa0554660:intron 55.0%
GCACCTTCATAGAGGGCCTA+AGG - chr4_1:52116460-52116479 None:intergenic 55.0%
!! CTTGGAGGAGCATTGCCTTG+TGG - chr4_1:52116880-52116899 None:intergenic 55.0%
!! AGGGCCGGCTCGAATGTAAA+GGG + chr4_1:52117815-52117834 Msa0554660:intron 55.0%
GCCCCAAAGATGAAGCCACG+TGG - chr4_1:52111425-52111444 None:intergenic 60.0%
!! CGTGGCTTCATCTTTGGGGC+GGG + chr4_1:52111425-52111444 Msa0554660:CDS 60.0%
!! GAGGGTGCTAAAGAGTGCCC+TGG - chr4_1:52113621-52113640 None:intergenic 60.0%
!! GGAGGAGCATTGCCTTGTGG+AGG - chr4_1:52116877-52116896 None:intergenic 60.0%
!! CAGGGCCGGCTCGAATGTAA+AGG + chr4_1:52117814-52117833 Msa0554660:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52111290 52118187 52111290 ID=Msa0554660;Name=Msa0554660
chr4_1 mRNA 52111290 52118187 52111290 ID=Msa0554660-mRNA-1;Parent=Msa0554660;Name=Msa0554660-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.25|0.30|1|1|1|13|199|514
chr4_1 exon 52111290 52111463 52111290 ID=Msa0554660-mRNA-1:exon:15019;Parent=Msa0554660-mRNA-1
chr4_1 exon 52111989 52112058 52111989 ID=Msa0554660-mRNA-1:exon:15020;Parent=Msa0554660-mRNA-1
chr4_1 exon 52113341 52113399 52113341 ID=Msa0554660-mRNA-1:exon:15021;Parent=Msa0554660-mRNA-1
chr4_1 exon 52114546 52114621 52114546 ID=Msa0554660-mRNA-1:exon:15022;Parent=Msa0554660-mRNA-1
chr4_1 exon 52114746 52114823 52114746 ID=Msa0554660-mRNA-1:exon:15023;Parent=Msa0554660-mRNA-1
chr4_1 exon 52114936 52115023 52114936 ID=Msa0554660-mRNA-1:exon:15024;Parent=Msa0554660-mRNA-1
chr4_1 exon 52115110 52115356 52115110 ID=Msa0554660-mRNA-1:exon:15025;Parent=Msa0554660-mRNA-1
chr4_1 exon 52115469 52115587 52115469 ID=Msa0554660-mRNA-1:exon:15026;Parent=Msa0554660-mRNA-1
chr4_1 exon 52116714 52116931 52116714 ID=Msa0554660-mRNA-1:exon:15027;Parent=Msa0554660-mRNA-1
chr4_1 exon 52117047 52117078 52117047 ID=Msa0554660-mRNA-1:exon:15028;Parent=Msa0554660-mRNA-1
chr4_1 exon 52117246 52117348 52117246 ID=Msa0554660-mRNA-1:exon:15029;Parent=Msa0554660-mRNA-1
chr4_1 exon 52117522 52117630 52117522 ID=Msa0554660-mRNA-1:exon:15030;Parent=Msa0554660-mRNA-1
chr4_1 exon 52117817 52118187 52117817 ID=Msa0554660-mRNA-1:exon:15031;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52111290 52111463 52111290 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52111989 52112058 52111989 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52113341 52113399 52113341 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52114546 52114621 52114546 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52114746 52114823 52114746 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52114936 52115023 52114936 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52115110 52115356 52115110 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52115469 52115587 52115469 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52116714 52116931 52116714 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52117047 52117078 52117047 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52117246 52117348 52117246 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52117522 52117630 52117522 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 CDS 52117817 52117988 52117817 ID=Msa0554660-mRNA-1:cds;Parent=Msa0554660-mRNA-1
chr4_1 three_prime_UTR 52117989 52118187 52117989 ID=Msa0554660-mRNA-1:three_prime_utr;Parent=Msa0554660-mRNA-1
Gene Sequence

>Msa0554660

ATGGTATTCATTGGCTATTTCAATGTGGCCATGCTTGCTCTCTTTGTTGTTAGCTCAGTCACACTTACTTTCGCAAACGGAGTTGAAGTTTCAACTCCTCTTGACATCGGCAACCTGAGTCGGAGTAGTTTTCCACGTGGCTTCATCTTTGGGGCGGGATCGTCATCTTACCAATTTGAAGGTGCAGTAAAGAAAGGTGGTAGAGGACCAAGTATCTGGGACACCTTCACCCATCAACATCCAGAAAAAATAAGGGATGGAAGCAATGCAGACGTGACTGTTGACCAATACCATCGCTATAAGGAAGATGTTGGGATTATGAAGGATCAGAATATGGATTCCTATAGATTCTCAATCGCTTGGCCAAGAATACTCCCAAAGGGGAAGTTGAGTGGAGGCATAAATCATGAAGGAATCAAATATTACAACAACCTCATCAACGAATTGTTGGCTAATGGTATACAACCATTCGTAACTCTTTTTCATTGGGATCTTCCCCAAGTCTTAGAAGACGAGTATGGTGGTTTCTTAAGCTCTCTCATAATAAATGATTTTCGAGACTATGCTGATCTTTGCTTCAAGGAATTCGGAGATAGAGTGAAGTACTGGGTTACATTTAACGAGCCATGGTTGTTTAGCAATGGTGGATATGCAATGGGAACAACAGCACCAGGTCGATGTTCTAGCCCAACATGTTTGGGTGGTAATTCTGGCACAGAACCTTATATAGTTACACATAATCAAATTCTTGCTCATGCAGAAGCTGTACATGTGTATAAGATCAAGTATCAGGCATATCAAAAGGGCAAGATAGGCATAACATTGGTAACAAATTGGTTCATACCACTTGGAAACAATAGCATACCCGATCAAAAGGCTGCCAAGAGATCACTTGACTTCCAATTTGGATGGTTTATGGAACCTCTAACAACCGGAGATTATCCTAAAAGCATGCAAGCCATAGTGAAAAACCGATTGCCTAAGTTCACTAAATTGCAATCAAAGCTAGTGAATGGTTCATTTGATTTTATTGGTATAAACTATTACTCTTCTAGCTATATTAACCATTTACCTCCACAAGGCAATGCTCCTCCAAGTTACTTAACAGATCCTATGACTAATACTTCATTTGAACAAAATGGAAAACCTCTAGGTCCAAGGGCTGCTTCAATTTGGATATACGTTTATCCAAGAGGACTTCGAGATCTTTTGTTATACACTAAGGAGAAATACAACAATCCTGTGGTCTACATTACTGAAAATGGTATGAATGAATTCAACGATGCAACACTTTCTGTAGAAGAAGCTCTTTTGGATACTTACAGAATTGATTACTATTATCGTCATTTCTTCTATATTCGTTCCGCAATCAAGGCCGGCTCGAATGTAAAGGGATTTTTCGCATGGTCATTTTTGGACTGTAATGAATGGATTGCAGGCTTTACTGTTCGTTTTGGATTAAACTTTGTAGATTACAATGATGGATTGAAAAGGTACCCAAAGCTTTCTGCTCAATGGTACAAGAACTTTCTCAAAAGAAACTAG
Protein sequence

>Msa0554660

MVFIGYFNVAMLALFVVSSVTLTFANGVEVSTPLDIGNLSRSSFPRGFIFGAGSSSYQFEGAVKKGGRGPSIWDTFTHQHPEKIRDGSNADVTVDQYHRYKEDVGIMKDQNMDSYRFSIAWPRILPKGKLSGGINHEGIKYYNNLINELLANGIQPFVTLFHWDLPQVLEDEYGGFLSSLIINDFRDYADLCFKEFGDRVKYWVTFNEPWLFSNGGYAMGTTAPGRCSSPTCLGGNSGTEPYIVTHNQILAHAEAVHVYKIKYQAYQKGKIGITLVTNWFIPLGNNSIPDQKAAKRSLDFQFGWFMEPLTTGDYPKSMQAIVKNRLPKFTKLQSKLVNGSFDFIGINYYSSSYINHLPPQGNAPPSYLTDPMTNTSFEQNGKPLGPRAASIWIYVYPRGLRDLLLYTKEKYNNPVVYITENGMNEFNDATLSVEEALLDTYRIDYYYRHFFYIRSAIKAGSNVKGFFAWSFLDCNEWIAGFTVRFGLNFVDYNDGLKRYPKLSAQWYKNFLKRN*