Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926900 | MCI18945.1 | 90.179 | 112 | 11 | 0 | 73 | 184 | 1 | 112 | 3.36e-67 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926900 | sp|Q9SZD6|PETS_ARATH | 82.727 | 110 | 19 | 0 | 75 | 184 | 754 | 863 | 4.37e-56 | 192 |
| Msa0926900 | sp|Q9SZD6|PETS_ARATH | 72.897 | 107 | 29 | 0 | 78 | 184 | 519 | 625 | 8.59e-50 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0926900 | 0.818791 | 1.630042e-52 | -8.615850e-47 |
| Msa0625720 | Msa0926900 | 0.803982 | 2.687284e-49 | -8.615850e-47 |
| Msa0626410 | Msa0926900 | 0.813519 | 2.456564e-51 | -8.615850e-47 |
| Msa0663390 | Msa0926900 | 0.803199 | 3.906931e-49 | -8.615850e-47 |
| Msa0679290 | Msa0926900 | -0.807466 | 4.986908e-50 | -8.615850e-47 |
| Msa0724210 | Msa0926900 | 0.809286 | 2.040059e-50 | -8.615850e-47 |
| Msa0762970 | Msa0926900 | 0.809984 | 1.444384e-50 | -8.615850e-47 |
| Msa0224780 | Msa0926900 | 0.827250 | 1.735799e-54 | -8.615850e-47 |
| Msa0229590 | Msa0926900 | 0.819086 | 1.397088e-52 | -8.615850e-47 |
| Msa0395770 | Msa0926900 | -0.807618 | 4.629847e-50 | -8.615850e-47 |
| Msa0410650 | Msa0926900 | 0.812524 | 4.059858e-51 | -8.615850e-47 |
| Msa0305700 | Msa0926900 | 0.803735 | 3.024267e-49 | -8.615850e-47 |
| Msa0338110 | Msa0926900 | 0.801556 | 8.517852e-49 | -8.615850e-47 |
| Msa0340450 | Msa0926900 | 0.812696 | 3.722280e-51 | -8.615850e-47 |
| Msa0490730 | Msa0926900 | -0.810633 | 1.046271e-50 | -8.615850e-47 |
| Msa0507680 | Msa0926900 | 0.804919 | 1.714070e-49 | -8.615850e-47 |
| Msa0529890 | Msa0926900 | 0.804346 | 2.257611e-49 | -8.615850e-47 |
| Msa0546490 | Msa0926900 | 0.823398 | 1.415049e-53 | -8.615850e-47 |
| Msa0553240 | Msa0926900 | 0.806686 | 7.292646e-50 | -8.615850e-47 |
| Msa0585560 | Msa0926900 | 0.800716 | 1.264911e-48 | -8.615850e-47 |
| Msa0903990 | Msa0926900 | 0.805417 | 1.348394e-49 | -8.615850e-47 |
| Msa0926890 | Msa0926900 | 0.820432 | 6.881949e-53 | -8.615850e-47 |
| Msa0926900 | Msa0927090 | 0.835638 | 1.493830e-56 | -8.615850e-47 |
| Msa0926900 | Msa0936530 | 0.812408 | 4.304196e-51 | -8.615850e-47 |
| Msa0926900 | Msa0961360 | 0.802059 | 6.713800e-49 | -8.615850e-47 |
| Msa0926900 | Msa0965610 | 0.858013 | 1.102549e-62 | -8.615850e-47 |
| Msa0926900 | Msa0974080 | 0.802972 | 4.352525e-49 | -8.615850e-47 |
| Msa0926900 | Msa1000170 | 0.840487 | 8.442307e-58 | -8.615850e-47 |
| Msa0926900 | Msa1000230 | 0.827226 | 1.759045e-54 | -8.615850e-47 |
| Msa0926900 | Msa1000240 | 0.824126 | 9.555313e-54 | -8.615850e-47 |
| Msa0926900 | Msa1000290 | 0.803549 | 3.305908e-49 | -8.615850e-47 |
| Msa0926900 | Msa1016320 | 0.801193 | 1.010519e-48 | -8.615850e-47 |
| Msa0926900 | Msa1019000 | 0.819941 | 8.916301e-53 | -8.615850e-47 |
| Msa0926900 | Msa1019150 | 0.824501 | 7.800511e-54 | -8.615850e-47 |
| Msa0926900 | Msa1022820 | 0.801801 | 7.585968e-49 | -8.615850e-47 |
| Msa0926900 | Msa1085200 | 0.815157 | 1.067722e-51 | -8.615850e-47 |
| Msa0926900 | Msa1113170 | 0.818997 | 1.463521e-52 | -8.615850e-47 |
| Msa0926900 | Msa1147740 | 0.822509 | 2.281058e-53 | -8.615850e-47 |
| Msa0926900 | Msa1207220 | 0.815891 | 7.325826e-52 | -8.615850e-47 |
| Msa0926900 | Msa1309030 | 0.811084 | 8.354907e-51 | -8.615850e-47 |
| Msa0926900 | Msa1332070 | 0.802541 | 5.342922e-49 | -8.615850e-47 |
| Msa0926900 | Msa1374470 | 0.804658 | 1.943869e-49 | -8.615850e-47 |
| Msa0926900 | Msa1383100 | 0.800216 | 1.599104e-48 | -8.615850e-47 |
| Msa0926900 | Msa1392260 | 0.806325 | 8.687685e-50 | -8.615850e-47 |
| Msa0926900 | Msa1415910 | 0.804423 | 2.175437e-49 | -8.615850e-47 |
| Msa0926900 | Msa1457040 | 0.848082 | 7.685959e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926900 | MtrunA17_Chr6g0486531 | 94.690 | 113 | 6 | 0 | 72 | 184 | 844 | 956 | 1.46e-68 | 225 |
| Msa0926900 | MtrunA17_Chr6g0486531 | 45.679 | 243 | 72 | 5 | 2 | 184 | 473 | 715 | 2.25e-56 | 191 |
| Msa0926900 | MtrunA17_Chr6g0486241 | 78.095 | 105 | 9 | 1 | 72 | 176 | 38 | 128 | 1.55e-46 | 151 |
| Msa0926900 | MtrunA17_Chr6g0486491 | 72.222 | 90 | 11 | 1 | 95 | 184 | 1 | 76 | 1.50e-38 | 127 |
| Msa0926900 | MtrunA17_Chr6g0484381 | 84.848 | 66 | 10 | 0 | 109 | 174 | 36 | 101 | 2.96e-34 | 119 |
| Msa0926900 | MtrunA17_Chr6g0486211 | 86.765 | 68 | 9 | 0 | 72 | 139 | 13 | 80 | 3.19e-34 | 116 |
| Msa0926900 | MtrunA17_Chr6g0486321 | 80.000 | 75 | 15 | 0 | 72 | 146 | 34 | 108 | 8.90e-34 | 118 |
| Msa0926900 | MtrunA17_Chr6g0460441 | 60.000 | 80 | 32 | 0 | 78 | 157 | 13 | 92 | 2.34e-28 | 103 |
| Msa0926900 | MtrunA17_Chr2g0299591 | 89.583 | 48 | 5 | 0 | 72 | 119 | 15 | 62 | 4.10e-24 | 90.1 |
| Msa0926900 | MtrunA17_Chr6g0477831 | 59.375 | 64 | 26 | 0 | 121 | 184 | 11 | 74 | 3.49e-21 | 83.2 |
| Msa0926900 | MtrunA17_Chr2g0299581 | 54.795 | 73 | 19 | 1 | 112 | 184 | 34 | 92 | 2.31e-17 | 75.9 |
| Msa0926900 | MtrunA17_Chr6g0448841 | 44.681 | 94 | 51 | 1 | 81 | 174 | 30 | 122 | 4.00e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926900 | AT4G29060.1 | 82.727 | 110 | 19 | 0 | 75 | 184 | 754 | 863 | 4.44e-57 | 192 |
| Msa0926900 | AT4G29060.1 | 72.897 | 107 | 29 | 0 | 78 | 184 | 519 | 625 | 8.73e-51 | 175 |
| Msa0926900 | AT4G29060.2 | 73.469 | 98 | 26 | 0 | 78 | 175 | 519 | 616 | 1.69e-45 | 159 |
| Msa0926900 | AT4G11120.1 | 41.270 | 126 | 56 | 4 | 48 | 173 | 58 | 165 | 6.19e-18 | 80.5 |
Find 38 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATTGGTTGAACAATTA+AGG | 0.159269 | 6_2:+71007893 | Msa0926900:CDS |
| CTCTTCACTGGAGTAGTTAC+CGG | 0.311865 | 6_2:-71006719 | None:intergenic |
| GCAAGCATACCTCAAGAAAA+AGG | 0.319716 | 6_2:+71007987 | Msa0926900:CDS |
| TCGCTGTCTGTCTCAGCTTC+AGG | 0.338291 | 6_2:-71005226 | None:intergenic |
| TTACTTTGGTTCAGTTTCCT+TGG | 0.353460 | 6_2:-71006761 | None:intergenic |
| CTCATTGGTTGAACAATTAA+GGG | 0.376225 | 6_2:+71007894 | Msa0926900:CDS |
| ATGTCTGATTCTATAACAAC+AGG | 0.381676 | 6_2:-71005265 | None:intergenic |
| TCATCCTCTGATAAGAAATC+TGG | 0.399367 | 6_2:+71008015 | Msa0926900:CDS |
| TGCACAAACTTCAGCAAAAC+CGG | 0.420632 | 6_2:+71006700 | Msa0926900:CDS |
| TCCTTGGCTTCTGTAGCAGC+AGG | 0.424542 | 6_2:-71006745 | None:intergenic |
| AGTACTGGTTTCGGCCTCAT+TGG | 0.428988 | 6_2:+71007879 | Msa0926900:CDS |
| GAAATCAACAGTACTGGTTT+CGG | 0.431645 | 6_2:+71007870 | Msa0926900:CDS |
| AGAAACGGGTGCAGGGATGA+TGG | 0.446137 | 6_2:+71007918 | Msa0926900:CDS |
| AGCAGCAGGTTCCTCTTCAC+TGG | 0.468921 | 6_2:-71006731 | None:intergenic |
| GCAAGTTGCTGCTTGTCCAC+AGG | 0.499547 | 6_2:+71008173 | Msa0926900:CDS |
| TTAAGGGAAGAAACGGGTGC+AGG | 0.502165 | 6_2:+71007910 | Msa0926900:CDS |
| GATTCTATAACAACAGGGCT+AGG | 0.503092 | 6_2:-71005259 | None:intergenic |
| TGTCAGGAAATCAACAGTAC+TGG | 0.503338 | 6_2:+71007864 | Msa0926900:intron |
| CTCACTTCTGCCAACAAAGT+CGG | 0.506846 | 6_2:-71008118 | None:intergenic |
| TGAACAATTAAGGGAAGAAA+CGG | 0.513907 | 6_2:+71007903 | Msa0926900:CDS |
| AACAGAAGGCGATCTTGAAA+AGG | 0.525411 | 6_2:+71007963 | Msa0926900:CDS |
| CCTTAATTGTTCAACCAATG+AGG | 0.526083 | 6_2:-71007893 | None:intergenic |
| TGGCAGAAGTGAGAAATTCA+AGG | 0.527151 | 6_2:+71008128 | Msa0926900:CDS |
| AAGTGAGAAATTCAAGGAGT+TGG | 0.528224 | 6_2:+71008134 | Msa0926900:CDS |
| AACTGTGAAACCGACTTTGT+TGG | 0.542867 | 6_2:+71008108 | Msa0926900:CDS |
| TCTTCCAGATTTCTTATCAG+AGG | 0.548288 | 6_2:-71008019 | None:intergenic |
| TACATTCACGATGCACGGAT+CGG | 0.559121 | 6_2:+71008069 | Msa0926900:CDS |
| ACCTGCTGCTACAGAAGCCA+AGG | 0.561437 | 6_2:+71006744 | Msa0926900:CDS |
| GAAGACTAGCAGCTGAAGGA+AGG | 0.569744 | 6_2:+71008037 | Msa0926900:CDS |
| ACATTACATCAAGAAACATA+AGG | 0.570939 | 6_2:+71005284 | Msa0926900:CDS |
| AATTATACAAACTGAACCTG+TGG | 0.578952 | 6_2:-71008189 | None:intergenic |
| AAAGCTCTTGCTGAAACAGA+AGG | 0.594868 | 6_2:+71007949 | Msa0926900:CDS |
| GAACAATTAAGGGAAGAAAC+GGG | 0.601207 | 6_2:+71007904 | Msa0926900:CDS |
| TCTGGAAGACTAGCAGCTGA+AGG | 0.607502 | 6_2:+71008033 | Msa0926900:CDS |
| TAAGGGAAGAAACGGGTGCA+GGG | 0.607891 | 6_2:+71007911 | Msa0926900:CDS |
| CGGTAACTACTCCAGTGAAG+AGG | 0.609138 | 6_2:+71006720 | Msa0926900:CDS |
| GTACATACATTCACGATGCA+CGG | 0.616607 | 6_2:+71008064 | Msa0926900:CDS |
| TGTCTGATTCTATAACAACA+GGG | 0.691768 | 6_2:-71005264 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGCTTAATAAAAATTCAT+GGG | - | chr6_2:71004872-71004891 | None:intergenic | 15.0% |
| !!! | ATTGATTTTAGTTGTAATTT+CGG | - | chr6_2:71005393-71005412 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAGAATGTAGTTT+TGG | - | chr6_2:71006852-71006871 | None:intergenic | 15.0% |
| !!! | ATGTAATGTATCTTTTAAAA+TGG | - | chr6_2:71007026-71007045 | None:intergenic | 15.0% |
| !!! | AAATATGGAAATTTTAGAAT+GGG | - | chr6_2:71007336-71007355 | None:intergenic | 15.0% |
| !!! | TAAATATGGAAATTTTAGAA+TGG | - | chr6_2:71007337-71007356 | None:intergenic | 15.0% |
| !! | TATTATCTATGAATTATTCT+TGG | + | chr6_2:71007611-71007630 | Msa0926900:intron | 15.0% |
| !! | AAAAACAAAAAAACACTTCA+TGG | - | chr6_2:71004766-71004785 | None:intergenic | 20.0% |
| !!! | AGTGTTTTTTTGTTTTTATG+TGG | + | chr6_2:71004769-71004788 | Msa0926900:intron | 20.0% |
| !! | CTAAGCTTAATAAAAATTCA+TGG | - | chr6_2:71004873-71004892 | None:intergenic | 20.0% |
| !! | ATATCATTTGGTAAGTTAAT+CGG | - | chr6_2:71005457-71005476 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTAACTTTGAATC+AGG | + | chr6_2:71005856-71005875 | Msa0926900:intron | 20.0% |
| !! | TATAAAGATAGCTTATACAT+AGG | + | chr6_2:71006302-71006321 | Msa0926900:intron | 20.0% |
| !! | TAAATAACTCAATAACAAGT+AGG | - | chr6_2:71006802-71006821 | None:intergenic | 20.0% |
| !! | GCAACTTTAAATTAAGTTAA+AGG | - | chr6_2:71006888-71006907 | None:intergenic | 20.0% |
| !!! | AAATATCGTGTTAATTTTGA+TGG | - | chr6_2:71007110-71007129 | None:intergenic | 20.0% |
| !! | TGAATTAGTATATCATTGAA+TGG | + | chr6_2:71007234-71007253 | Msa0926900:intron | 20.0% |
| !!! | CATTAACCTTATTTACTAAT+TGG | + | chr6_2:71007385-71007404 | Msa0926900:intron | 20.0% |
| !! | TTAAGTGAAAGAAAAATAGT+AGG | - | chr6_2:71007447-71007466 | None:intergenic | 20.0% |
| !! | AACATGTATACAAATATGAA+GGG | - | chr6_2:71007588-71007607 | None:intergenic | 20.0% |
| !! | TAACATGTATACAAATATGA+AGG | - | chr6_2:71007589-71007608 | None:intergenic | 20.0% |
| ! | TCACATTCAATTCAGATAAT+TGG | - | chr6_2:71005105-71005124 | None:intergenic | 25.0% |
| ! | AACAATTAGCTCAATATTCA+AGG | - | chr6_2:71005155-71005174 | None:intergenic | 25.0% |
| ! | ACATTACATCAAGAAACATA+AGG | + | chr6_2:71005284-71005303 | Msa0926900:CDS | 25.0% |
| ! | AATGGAAAGGAAATATCATT+TGG | - | chr6_2:71005469-71005488 | None:intergenic | 25.0% |
| ! | TTAATCCAGTTGTTAAATAG+AGG | - | chr6_2:71005703-71005722 | None:intergenic | 25.0% |
| ! | GAATGACATCATAATAGAAA+AGG | + | chr6_2:71005816-71005835 | Msa0926900:intron | 25.0% |
| !! | GAAAAGGCATATTTAACAAA+TGG | + | chr6_2:71005832-71005851 | Msa0926900:intron | 25.0% |
| ! | ACATATTTACTTCTGTTTGA+TGG | - | chr6_2:71006017-71006036 | None:intergenic | 25.0% |
| ! | TAAAAAAAAGTTGGGGAAAA+AGG | - | chr6_2:71006107-71006126 | None:intergenic | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+AGG | + | chr6_2:71006326-71006345 | Msa0926900:intron | 25.0% |
| ! | ATTCATAGAACTACTTACTT+TGG | - | chr6_2:71006778-71006797 | None:intergenic | 25.0% |
| !!! | TTTTTAGAATGTAGTTTTGG+AGG | - | chr6_2:71006849-71006868 | None:intergenic | 25.0% |
| !! | CTTAATTTAAAGTTGCAAAC+AGG | + | chr6_2:71006892-71006911 | Msa0926900:intron | 25.0% |
| ! | GTATATCATTGAATGGATAT+AGG | + | chr6_2:71007241-71007260 | Msa0926900:intron | 25.0% |
| ! | TTGTGCCTAAAAAGAAAATT+GGG | + | chr6_2:71007792-71007811 | Msa0926900:intron | 25.0% |
| !! | TTTCTCCCAATTTTCTTTTT+AGG | - | chr6_2:71007800-71007819 | None:intergenic | 25.0% |
| !!! | AATTGTTTTAATGTTCTGTC+AGG | + | chr6_2:71007848-71007867 | Msa0926900:intron | 25.0% |
| TTCAATTCAGATAATTGGCA+AGG | - | chr6_2:71005100-71005119 | None:intergenic | 30.0% | |
| ! | TTTCCATAACTGAGTTTTCA+TGG | + | chr6_2:71005129-71005148 | Msa0926900:intron | 30.0% |
| AAACAATCAAAAAGTGACAG+TGG | + | chr6_2:71005187-71005206 | Msa0926900:CDS | 30.0% | |
| TGTCTGATTCTATAACAACA+GGG | - | chr6_2:71005267-71005286 | None:intergenic | 30.0% | |
| ATGTCTGATTCTATAACAAC+AGG | - | chr6_2:71005268-71005287 | None:intergenic | 30.0% | |
| CAATAACATGCATATGTACA+TGG | + | chr6_2:71005426-71005445 | Msa0926900:intron | 30.0% | |
| !! | TAAATAGAGGCACTATATAG+TGG | - | chr6_2:71005690-71005709 | None:intergenic | 30.0% |
| TTGATGGAGAAAAATGAGAA+TGG | - | chr6_2:71006001-71006020 | None:intergenic | 30.0% | |
| !!! | TCCCCAACTTTTTTTTATGT+TGG | + | chr6_2:71006110-71006129 | Msa0926900:intron | 30.0% |
| CCCAACATAAAAAAAAGTTG+GGG | - | chr6_2:71006114-71006133 | None:intergenic | 30.0% | |
| !!! | CCCCAACTTTTTTTTATGTT+GGG | + | chr6_2:71006111-71006130 | Msa0926900:intron | 30.0% |
| GCCCAACATAAAAAAAAGTT+GGG | - | chr6_2:71006115-71006134 | None:intergenic | 30.0% | |
| ! | ATGCTATCATTGATAGCTTA+TGG | - | chr6_2:71006227-71006246 | None:intergenic | 30.0% |
| !!! | GCTTATACATAGGTTTTGTT+TGG | + | chr6_2:71006312-71006331 | Msa0926900:intron | 30.0% |
| GAATTCAAAGATATGTCAAC+AGG | - | chr6_2:71006474-71006493 | None:intergenic | 30.0% | |
| TTAACACGAAAACAAGATCA+AGG | - | chr6_2:71006919-71006938 | None:intergenic | 30.0% | |
| TTTAGTCATTTCTTCATGTC+AGG | + | chr6_2:71006939-71006958 | Msa0926900:intron | 30.0% | |
| ! | GTTTAAAACGTCAACAATGT+AGG | + | chr6_2:71006973-71006992 | Msa0926900:intron | 30.0% |
| AATTCAAATGTTTCACCGAT+CGG | - | chr6_2:71007220-71007239 | None:intergenic | 30.0% | |
| ! | GATATAGGCTAATTTGAAGT+TGG | + | chr6_2:71007256-71007275 | Msa0926900:intron | 30.0% |
| !! | TGTCTACTTTGGGATAAATA+TGG | - | chr6_2:71007351-71007370 | None:intergenic | 30.0% |
| !!! | ATCCCAAAGTAGACATTTTT+TGG | + | chr6_2:71007356-71007375 | Msa0926900:intron | 30.0% |
| CACCAAAAAATGTCTACTTT+GGG | - | chr6_2:71007361-71007380 | None:intergenic | 30.0% | |
| TCACCAAAAAATGTCTACTT+TGG | - | chr6_2:71007362-71007381 | None:intergenic | 30.0% | |
| GCTAAGCCAATTAGTAAATA+AGG | - | chr6_2:71007394-71007413 | None:intergenic | 30.0% | |
| TGTATACAAATATGAAGGGA+AGG | - | chr6_2:71007584-71007603 | None:intergenic | 30.0% | |
| ACAAAACTTAACCTAAGTTG+TGG | + | chr6_2:71007639-71007658 | Msa0926900:intron | 30.0% | |
| TATCAAATGTCTGTTTGTGT+CGG | - | chr6_2:71007701-71007720 | None:intergenic | 30.0% | |
| !!! | GCATTTTCTGAAATTATCAC+CGG | - | chr6_2:71007749-71007768 | None:intergenic | 30.0% |
| AAATGCAACAACTGATATGT+AGG | + | chr6_2:71007763-71007782 | Msa0926900:intron | 30.0% | |
| GTTGTGCCTAAAAAGAAAAT+TGG | + | chr6_2:71007791-71007810 | Msa0926900:intron | 30.0% | |
| ! | CTCATTGGTTGAACAATTAA+GGG | + | chr6_2:71007894-71007913 | Msa0926900:CDS | 30.0% |
| TGAACAATTAAGGGAAGAAA+CGG | + | chr6_2:71007903-71007922 | Msa0926900:CDS | 30.0% | |
| AGTGTAACAAGAATGCACTA+AGG | - | chr6_2:71004910-71004929 | None:intergenic | 35.0% | |
| ATCAAAAAGTGACAGTGGAA+AGG | + | chr6_2:71005192-71005211 | Msa0926900:CDS | 35.0% | |
| TCGCATTCGTATTTCACATA+TGG | + | chr6_2:71005344-71005363 | Msa0926900:intron | 35.0% | |
| ! | TTCCTTTCCATTTCAAGTAG+AGG | + | chr6_2:71005477-71005496 | Msa0926900:intron | 35.0% |
| ACATTGTCCTCTACTTGAAA+TGG | - | chr6_2:71005487-71005506 | None:intergenic | 35.0% | |
| ! | TTTCAAGTAGAGGACAATGT+TGG | + | chr6_2:71005487-71005506 | Msa0926900:intron | 35.0% |
| ! | AATCTCTCTGTTCTTTGGAA+CGG | - | chr6_2:71005515-71005534 | None:intergenic | 35.0% |
| TAGTGCCTCTATTTAACAAC+TGG | + | chr6_2:71005695-71005714 | Msa0926900:intron | 35.0% | |
| !!! | TTCTTGCACTTCTTTTTCAG+TGG | - | chr6_2:71005903-71005922 | None:intergenic | 35.0% |
| TTTGTCCATTAGAATACTGC+AGG | - | chr6_2:71005932-71005951 | None:intergenic | 35.0% | |
| ! | CAGTATTCTAATGGACAAAC+CGG | + | chr6_2:71005933-71005952 | Msa0926900:intron | 35.0% |
| TTAGATGAAGGCTAGAGTAA+AGG | + | chr6_2:71005966-71005985 | Msa0926900:intron | 35.0% | |
| GGCCCAACATAAAAAAAAGT+TGG | - | chr6_2:71006116-71006135 | None:intergenic | 35.0% | |
| ATCACATAAGCCAATCCAAA+CGG | - | chr6_2:71006138-71006157 | None:intergenic | 35.0% | |
| AGTCTCGCAAGTTATTATGT+TGG | - | chr6_2:71006169-71006188 | None:intergenic | 35.0% | |
| ! | TAATAACTTGCGAGACTGTT+TGG | + | chr6_2:71006172-71006191 | Msa0926900:intron | 35.0% |
| TATAGTTGCTGCAATCCAAA+GGG | - | chr6_2:71006536-71006555 | None:intergenic | 35.0% | |
| ATATAGTTGCTGCAATCCAA+AGG | - | chr6_2:71006537-71006556 | None:intergenic | 35.0% | |
| !! | AAAATCCTGGCTTTTTCCTT+AGG | - | chr6_2:71006666-71006685 | None:intergenic | 35.0% |
| ! | TTACTTTGGTTCAGTTTCCT+TGG | - | chr6_2:71006764-71006783 | None:intergenic | 35.0% |
| GTGAAACATAAGTCCAATTG+TGG | + | chr6_2:71007192-71007211 | Msa0926900:intron | 35.0% | |
| ! | AAATTAAGTTAATGGACCCC+TGG | + | chr6_2:71007300-71007319 | Msa0926900:intron | 35.0% |
| ACAAATATGAAGGGAAGGTT+AGG | - | chr6_2:71007579-71007598 | None:intergenic | 35.0% | |
| !! | GAAATCAACAGTACTGGTTT+CGG | + | chr6_2:71007870-71007889 | Msa0926900:CDS | 35.0% |
| CCTTAATTGTTCAACCAATG+AGG | - | chr6_2:71007896-71007915 | None:intergenic | 35.0% | |
| ! | CCTCATTGGTTGAACAATTA+AGG | + | chr6_2:71007893-71007912 | Msa0926900:CDS | 35.0% |
| GAACAATTAAGGGAAGAAAC+GGG | + | chr6_2:71007904-71007923 | Msa0926900:CDS | 35.0% | |
| CAAGCATACCTCAAGAAAAA+GGG | + | chr6_2:71007988-71008007 | Msa0926900:CDS | 35.0% | |
| TCATCCTCTGATAAGAAATC+TGG | + | chr6_2:71008015-71008034 | Msa0926900:CDS | 35.0% | |
| TCTTCCAGATTTCTTATCAG+AGG | - | chr6_2:71008022-71008041 | None:intergenic | 35.0% | |
| AAGTGAGAAATTCAAGGAGT+TGG | + | chr6_2:71008134-71008153 | Msa0926900:CDS | 35.0% | |
| AGGCCATGAAAACTCAGTTA+TGG | - | chr6_2:71005135-71005154 | None:intergenic | 40.0% | |
| GATTCTATAACAACAGGGCT+AGG | - | chr6_2:71005262-71005281 | None:intergenic | 40.0% | |
| GTCCTCTACTTGAAATGGAA+AGG | - | chr6_2:71005482-71005501 | None:intergenic | 40.0% | |
| GCATCAATCTCTCTGTTCTT+TGG | - | chr6_2:71005520-71005539 | None:intergenic | 40.0% | |
| ! | GAGATTGATGCTAGTTTGAC+AGG | + | chr6_2:71005529-71005548 | Msa0926900:intron | 40.0% |
| AGACACCTGCAGTATTCTAA+TGG | + | chr6_2:71005924-71005943 | Msa0926900:intron | 40.0% | |
| ! | TTCATCTAAAGCAGCAATGC+CGG | - | chr6_2:71005955-71005974 | None:intergenic | 40.0% |
| !!! | TTTTTTATGTTGGGCCCGTT+TGG | + | chr6_2:71006120-71006139 | Msa0926900:intron | 40.0% |
| TCACATAAGCCAATCCAAAC+GGG | - | chr6_2:71006137-71006156 | None:intergenic | 40.0% | |
| ! | CGTCTGTGACGATTTTCAAT+TGG | + | chr6_2:71006410-71006429 | Msa0926900:intron | 40.0% |
| TCAATTGGATATCTTGTCCC+TGG | + | chr6_2:71006425-71006444 | Msa0926900:intron | 40.0% | |
| CAATTGGATATCTTGTCCCT+GGG | + | chr6_2:71006426-71006445 | Msa0926900:intron | 40.0% | |
| TCAAAGATATGTCAACAGGC+TGG | - | chr6_2:71006470-71006489 | None:intergenic | 40.0% | |
| ATAGTTGCTGCAATCCAAAG+GGG | - | chr6_2:71006535-71006554 | None:intergenic | 40.0% | |
| AATGCTCTATCAGAGAGTCA+AGG | + | chr6_2:71006616-71006635 | Msa0926900:intron | 40.0% | |
| TGACTTCAGCAGAAAAATCC+TGG | - | chr6_2:71006679-71006698 | None:intergenic | 40.0% | |
| TGCACAAACTTCAGCAAAAC+CGG | + | chr6_2:71006700-71006719 | Msa0926900:CDS | 40.0% | |
| GTCATTTCTTCATGTCAGGT+TGG | + | chr6_2:71006943-71006962 | Msa0926900:intron | 40.0% | |
| TGGACTTATGTTTCACCGAT+CGG | - | chr6_2:71007188-71007207 | None:intergenic | 40.0% | |
| GTCATAAACAGCCACAACTT+AGG | - | chr6_2:71007653-71007672 | None:intergenic | 40.0% | |
| TAACACTAACATGTCGACAC+CGG | + | chr6_2:71007727-71007746 | Msa0926900:intron | 40.0% | |
| TGTCAGGAAATCAACAGTAC+TGG | + | chr6_2:71007864-71007883 | Msa0926900:intron | 40.0% | |
| AAAGCTCTTGCTGAAACAGA+AGG | + | chr6_2:71007949-71007968 | Msa0926900:CDS | 40.0% | |
| AACAGAAGGCGATCTTGAAA+AGG | + | chr6_2:71007963-71007982 | Msa0926900:CDS | 40.0% | |
| GCAAGCATACCTCAAGAAAA+AGG | + | chr6_2:71007987-71008006 | Msa0926900:CDS | 40.0% | |
| ! | ATGAGAGACCCTTTTTCTTG+AGG | - | chr6_2:71007999-71008018 | None:intergenic | 40.0% |
| GTACATACATTCACGATGCA+CGG | + | chr6_2:71008064-71008083 | Msa0926900:CDS | 40.0% | |
| ! | AACTGTGAAACCGACTTTGT+TGG | + | chr6_2:71008108-71008127 | Msa0926900:CDS | 40.0% |
| TGGCAGAAGTGAGAAATTCA+AGG | + | chr6_2:71008128-71008147 | Msa0926900:CDS | 40.0% | |
| !! | AGTGCCGATTTCTCTCATGA+GGG | + | chr6_2:71005556-71005575 | Msa0926900:intron | 45.0% |
| GCTTCCCTCATGAGAGAAAT+CGG | - | chr6_2:71005563-71005582 | None:intergenic | 45.0% | |
| CATGAGGGAAGCTTGAATAC+AGG | + | chr6_2:71005571-71005590 | Msa0926900:intron | 45.0% | |
| ! | TTTTCAGTGGCAGGACTTTC+AGG | - | chr6_2:71005890-71005909 | None:intergenic | 45.0% |
| !!! | TGCACTTCTTTTTCAGTGGC+AGG | - | chr6_2:71005899-71005918 | None:intergenic | 45.0% |
| !! | GGCATTGCTGCTTTAGATGA+AGG | + | chr6_2:71005954-71005973 | Msa0926900:intron | 45.0% |
| TCGTCACAGACGATTCTGTT+TGG | - | chr6_2:71006402-71006421 | None:intergenic | 45.0% | |
| TAGTTGCTGCAATCCAAAGG+GGG | - | chr6_2:71006534-71006553 | None:intergenic | 45.0% | |
| CAGCACTTGTGAAGCAACTT+CGG | + | chr6_2:71006560-71006579 | Msa0926900:intron | 45.0% | |
| AGCACTTGTGAAGCAACTTC+GGG | + | chr6_2:71006561-71006580 | Msa0926900:intron | 45.0% | |
| CTCTTCACTGGAGTAGTTAC+CGG | - | chr6_2:71006722-71006741 | None:intergenic | 45.0% | |
| AACTGTGACCTCGTTGTCAA+CGG | + | chr6_2:71007146-71007165 | Msa0926900:intron | 45.0% | |
| TGTCAACGGAAGTCCAATTG+TGG | + | chr6_2:71007160-71007179 | Msa0926900:intron | 45.0% | |
| !! | AGTCCAATTGTGGTACCGAT+CGG | + | chr6_2:71007170-71007189 | Msa0926900:intron | 45.0% |
| !! | AGTCCAATTGTGGTACCGAT+CGG | + | chr6_2:71007170-71007189 | Msa0926900:intron | 45.0% |
| AATGGGCAAAACTACACCAG+GGG | - | chr6_2:71007319-71007338 | None:intergenic | 45.0% | |
| GAATGGGCAAAACTACACCA+GGG | - | chr6_2:71007320-71007339 | None:intergenic | 45.0% | |
| AGAATGGGCAAAACTACACC+AGG | - | chr6_2:71007321-71007340 | None:intergenic | 45.0% | |
| TACATTCACGATGCACGGAT+CGG | + | chr6_2:71008069-71008088 | Msa0926900:CDS | 45.0% | |
| CTCACTTCTGCCAACAAAGT+CGG | - | chr6_2:71008121-71008140 | None:intergenic | 45.0% | |
| !!! | ATATTTTTAAATTAAGTTAA+TGG | + | chr6_2:71007292-71007311 | Msa0926900:intron | 5.0% |
| !! | GAGTGCCGATTTCTCTCATG+AGG | + | chr6_2:71005555-71005574 | Msa0926900:intron | 50.0% |
| TATGTTGGGCCCGTTTGGAT+TGG | + | chr6_2:71006125-71006144 | Msa0926900:intron | 50.0% | |
| ATCTTGTCCCTGGGTAGAAC+TGG | + | chr6_2:71006435-71006454 | Msa0926900:intron | 50.0% | |
| TCTTGTCCCTGGGTAGAACT+GGG | + | chr6_2:71006436-71006455 | Msa0926900:intron | 50.0% | |
| CAAACTCCCAGTTCTACCCA+GGG | - | chr6_2:71006445-71006464 | None:intergenic | 50.0% | |
| AGTTGCTGCAATCCAAAGGG+GGG | - | chr6_2:71006533-71006552 | None:intergenic | 50.0% | |
| CGAAGTTGCTTCACAAGTGC+TGG | - | chr6_2:71006562-71006581 | None:intergenic | 50.0% | |
| AAGCAACTTCGGGACGAAAC+AGG | + | chr6_2:71006571-71006590 | Msa0926900:intron | 50.0% | |
| CGAAACAGGAGCTGGAATGA+TGG | + | chr6_2:71006585-71006604 | Msa0926900:intron | 50.0% | |
| TCAAAGCACACGAGCTCCTA+AGG | + | chr6_2:71006647-71006666 | Msa0926900:intron | 50.0% | |
| GAGCTCCTAAGGAAAAAGCC+AGG | + | chr6_2:71006658-71006677 | Msa0926900:intron | 50.0% | |
| CGGTAACTACTCCAGTGAAG+AGG | + | chr6_2:71006720-71006739 | Msa0926900:CDS | 50.0% | |
| TTGGACTTCCGTTGACAACG+AGG | - | chr6_2:71007157-71007176 | None:intergenic | 50.0% | |
| TCACCGATCGGTACCACAAT+TGG | - | chr6_2:71007176-71007195 | None:intergenic | 50.0% | |
| TCACCGATCGGTACCACAAT+TGG | - | chr6_2:71007176-71007195 | None:intergenic | 50.0% | |
| TTGGCTTAGCTGTCACGCAA+TGG | + | chr6_2:71007404-71007423 | Msa0926900:intron | 50.0% | |
| !! | AGTACTGGTTTCGGCCTCAT+TGG | + | chr6_2:71007879-71007898 | Msa0926900:CDS | 50.0% |
| TTAAGGGAAGAAACGGGTGC+AGG | + | chr6_2:71007910-71007929 | Msa0926900:CDS | 50.0% | |
| TAAGGGAAGAAACGGGTGCA+GGG | + | chr6_2:71007911-71007930 | Msa0926900:CDS | 50.0% | |
| TCTGGAAGACTAGCAGCTGA+AGG | + | chr6_2:71008033-71008052 | Msa0926900:CDS | 50.0% | |
| GAAGACTAGCAGCTGAAGGA+AGG | + | chr6_2:71008037-71008056 | Msa0926900:CDS | 50.0% | |
| TCGCTGTCTGTCTCAGCTTC+AGG | - | chr6_2:71005229-71005248 | None:intergenic | 55.0% | |
| CCAAACTCCCAGTTCTACCC+AGG | - | chr6_2:71006446-71006465 | None:intergenic | 55.0% | |
| CCTGGGTAGAACTGGGAGTT+TGG | + | chr6_2:71006443-71006462 | Msa0926900:intron | 55.0% | |
| AGCAGCAGGTTCCTCTTCAC+TGG | - | chr6_2:71006734-71006753 | None:intergenic | 55.0% | |
| ACCTGCTGCTACAGAAGCCA+AGG | + | chr6_2:71006744-71006763 | Msa0926900:CDS | 55.0% | |
| TCCTTGGCTTCTGTAGCAGC+AGG | - | chr6_2:71006748-71006767 | None:intergenic | 55.0% | |
| AGAAACGGGTGCAGGGATGA+TGG | + | chr6_2:71007918-71007937 | Msa0926900:CDS | 55.0% | |
| ! | GCAAGTTGCTGCTTGTCCAC+AGG | + | chr6_2:71008173-71008192 | Msa0926900:CDS | 55.0% |
| ATGTCTGTTCCGCCCCCCTT+TGG | + | chr6_2:71006518-71006537 | Msa0926900:intron | 60.0% | |
| TGCTGCAATCCAAAGGGGGG+CGG | - | chr6_2:71006530-71006549 | None:intergenic | 60.0% | |
| CTTCGGGACGAAACAGGAGC+TGG | + | chr6_2:71006577-71006596 | Msa0926900:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 71004740 | 71008209 | 71004740 | ID=Msa0926900;Name=Msa0926900 |
| chr6_2 | mRNA | 71004740 | 71008209 | 71004740 | ID=Msa0926900-mRNA-1;Parent=Msa0926900;Name=Msa0926900-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.33|0|0.5|0.66|0.75|4|0|184 |
| chr6_2 | exon | 71004740 | 71004743 | 71004740 | ID=Msa0926900-mRNA-1:exon:11723;Parent=Msa0926900-mRNA-1 |
| chr6_2 | exon | 71005179 | 71005305 | 71005179 | ID=Msa0926900-mRNA-1:exon:11724;Parent=Msa0926900-mRNA-1 |
| chr6_2 | exon | 71006696 | 71006779 | 71006696 | ID=Msa0926900-mRNA-1:exon:11725;Parent=Msa0926900-mRNA-1 |
| chr6_2 | exon | 71007870 | 71008209 | 71007870 | ID=Msa0926900-mRNA-1:exon:11726;Parent=Msa0926900-mRNA-1 |
| chr6_2 | CDS | 71004740 | 71004743 | 71004740 | ID=Msa0926900-mRNA-1:cds;Parent=Msa0926900-mRNA-1 |
| chr6_2 | CDS | 71005179 | 71005305 | 71005179 | ID=Msa0926900-mRNA-1:cds;Parent=Msa0926900-mRNA-1 |
| chr6_2 | CDS | 71006696 | 71006779 | 71006696 | ID=Msa0926900-mRNA-1:cds;Parent=Msa0926900-mRNA-1 |
| chr6_2 | CDS | 71007870 | 71008209 | 71007870 | ID=Msa0926900-mRNA-1:cds;Parent=Msa0926900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
