AlfalfaGEDB | Msa0965610

M. sativa cultivar zhongmu-4 / Msa0965610

KEGG: K02357
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00889.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0965610	MCI18945.1	88.550	131	14	1	45	174	1	131	1.27e-74	231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0965610	sp\|Q9SZD6\|PETS_ARATH	81.395	129	23	1	47	174	754	882	1.55e-61	207
Msa0965610	sp\|Q9SZD6\|PETS_ARATH	60.588	170	54	4	13	174	480	644	5.59e-56	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0965610	0.815163	1.064232e-51	-8.615850e-47
Msa0006110	Msa0965610	0.807290	5.432938e-50	-8.615850e-47
Msa0007990	Msa0965610	0.804791	1.822805e-49	-8.615850e-47
Msa0010890	Msa0965610	0.804378	2.223727e-49	-8.615850e-47
Msa0011500	Msa0965610	0.804086	2.556827e-49	-8.615850e-47
Msa0011660	Msa0965610	-0.809810	1.573763e-50	-8.615850e-47
Msa0017510	Msa0965610	0.808548	2.933711e-50	-8.615850e-47
Msa0025330	Msa0965610	0.805239	1.469621e-49	-8.615850e-47
Msa0075470	Msa0965610	0.820238	7.621827e-53	-8.615850e-47
Msa0077400	Msa0965610	0.829109	6.187172e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0965610	MtrunA17_Chr6g0486531	93.182	132	8	1	44	174	844	975	1.39e-76	246
Msa0965610	MtrunA17_Chr6g0486531	58.788	165	64	2	14	174	570	734	7.26e-55	186
Msa0965610	MtrunA17_Chr6g0486491	72.897	107	16	1	67	173	1	94	1.98e-45	144
Msa0965610	MtrunA17_Chr6g0486241	78.095	105	8	2	44	147	38	128	6.85e-44	144
Msa0965610	MtrunA17_Chr6g0486321	58.779	131	25	1	44	174	34	135	4.98e-39	131
Msa0965610	MtrunA17_Chr6g0486211	88.235	68	8	0	44	111	13	80	4.62e-34	115
Msa0965610	MtrunA17_Chr6g0484381	86.364	66	8	1	81	145	36	101	6.93e-32	112
Msa0965610	MtrunA17_Chr6g0460441	49.600	125	43	1	50	174	13	117	1.86e-31	110
Msa0965610	MtrunA17_Chr2g0299581	61.538	91	22	1	84	174	34	111	5.91e-29	105
Msa0965610	MtrunA17_Chr2g0299591	93.750	48	3	0	44	91	15	62	1.76e-25	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0965610	AT4G29060.1	81.395	129	23	1	47	174	754	882	1.58e-62	207
Msa0965610	AT4G29060.1	60.588	170	54	4	13	174	480	644	5.68e-57	192
Msa0965610	AT4G29060.2	59.412	170	50	5	13	174	480	638	5.32e-53	179
Msa0965610	AT4G11120.1	48.387	93	44	3	53	144	76	165	5.70e-15	72.0

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Find 37 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCGCAAGCATACCTC+AGG	0.548541	6_3:-93134708	Msa0965610:CDS
AAACAATTAAGGGAAGAAAC+GGG	0.554559	6_3:-93134784	Msa0965610:CDS
AAAGCTCTTGCTGAAACAGA+AGG	0.594868	6_3:-93134739	Msa0965610:CDS
AACAGAAGGCGATCTTGAAA+AGG	0.525411	6_3:-93134725	Msa0965610:CDS
AAGTGAGAAATTCAAGGAGT+TGG	0.528224	6_3:-93134557	Msa0965610:CDS
ACATTACATCAAGAAACATA+AGG	0.570939	6_3:-93136944	Msa0965610:intron
AGAAACGGGTACAGGGATGA+TGG	0.483539	6_3:-93134770	Msa0965610:CDS
AGGTCTTCTCATTGCATCTC+AGG	0.406127	6_3:+93134439	None:intergenic
AGTACTGGTTTCGGCCTCAT+TGG	0.405483	6_3:-93134809	Msa0965610:CDS
ATAGATACAAACGGAACCTG+AGG	0.668908	6_3:+93134502	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATGTTCTGTTTCATACC+AGG	-	chr6_3:93134452-93134471	Msa0965610:CDS	30.0%
TTCAATTCAGATAATTGGCA+AGG	+	chr6_3:93134808-93134827	None:intergenic	30.0%
AAACAATCAAAAAGTGACAG+TGG	-	chr6_3:93134942-93134961	Msa0965610:intron	30.0%
TGTCTGATTCTGTAATAACA+GGG	+	chr6_3:93135022-93135041	None:intergenic	30.0%
ATGTCTGATTCTGTAATAAC+AGG	+	chr6_3:93135023-93135042	None:intergenic	30.0%
CAATAACATGCATATGTACA+TGG	-	chr6_3:93135180-93135199	Msa0965610:intron	30.0%
TCAATCCAGTTGTTAAATAG+AGG	+	chr6_3:93135455-93135474	None:intergenic	30.0%
CTAAAACGAAAAACTACAAC+AGG	-	chr6_3:93136127-93136146	Msa0965610:intron	30.0%
TTAACACGAAAACAAGATCA+AGG	+	chr6_3:93136186-93136205	None:intergenic	30.0%
GTATATCATTGAAGGGATAT+AGG	-	chr6_3:93136454-93136473	Msa0965610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	93134447	93137558	93134447	ID=Msa0965610;Name=Msa0965610
chr6_3	mRNA	93134447	93137558	93134447	ID=Msa0965610-mRNA-1;Parent=Msa0965610;Name=Msa0965610-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|174
chr6_3	exon	93137555	93137558	93137555	ID=Msa0965610-mRNA-1:exon:17045;Parent=Msa0965610-mRNA-1
chr6_3	exon	93136945	93137071	93136945	ID=Msa0965610-mRNA-1:exon:17044;Parent=Msa0965610-mRNA-1
chr6_3	exon	93134447	93134840	93134447	ID=Msa0965610-mRNA-1:exon:17043;Parent=Msa0965610-mRNA-1
chr6_3	CDS	93137555	93137558	93137555	ID=Msa0965610-mRNA-1:cds;Parent=Msa0965610-mRNA-1
chr6_3	CDS	93136945	93137071	93136945	ID=Msa0965610-mRNA-1:cds;Parent=Msa0965610-mRNA-1
chr6_3	CDS	93134447	93134840	93134447	ID=Msa0965610-mRNA-1:cds;Parent=Msa0965610-mRNA-1

Gene Sequence

>Msa0965610

ATGGAAGATAAAAAACAATCAAAAAGTGACAGTGGAAAGGAAGAAGTTGCACCTGAAACTGAGACAGACAGCGATGCATTTGATCCTAGCCCTGTTATTACAGAATCAGACATTACATCAAGAAACATAAGGAAATCAACAGTACTGGTTTCGGCCTCATTGGTTAAACAATTAAGGGAAGAAACGGGTACAGGGATGATGGACTGTAAGAAAGCTCTTGCTGAAACAGAAGGCGATCTTGAAAAGGCGCAAGCATACCTCAGGAAAAAGGGTCTCTCATCCGCTGATAAGAAATCCGGAAGACTAGCAGCTGAAGAAAGGATCAGTACATACATTCACGATGCACGGATCGGTGTTCTAATTGAAGTGAACTGTGAAACCGACTTTGGCAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCTCAGGTTCCGTTTGTATCTATTGAAGATATTCCCGAAACTATTGTGACGAAGGAAAAAGAACCTGAGATGCAATGA

Protein sequence

>Msa0965610

MEDKKQSKSDSGKEEVAPETETDSDAFDPSPVITESDITSRNIRKSTVLVSASLVKQLREETGTGMMDCKKALAETEGDLEKAQAYLRKKGLSSADKKSGRLAAEERISTYIHDARIGVLIEVNCETDFGRSEKFKELVDDLAMQVAACPQVPFVSIEDIPETIVTKEKEPEMQ*