Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050370 | Msa0960720 | 0.802347 | 5.857449e-49 | -8.615850e-47 |
| Msa0075470 | Msa0960720 | 0.812653 | 3.805354e-51 | -8.615850e-47 |
| Msa0637710 | Msa0960720 | 0.810067 | 1.385931e-50 | -8.615850e-47 |
| Msa0731940 | Msa0960720 | 0.800299 | 1.538494e-48 | -8.615850e-47 |
| Msa0766630 | Msa0960720 | 0.800502 | 1.398353e-48 | -8.615850e-47 |
| Msa0131770 | Msa0960720 | 0.800584 | 1.345687e-48 | -8.615850e-47 |
| Msa0229590 | Msa0960720 | 0.811175 | 7.982273e-51 | -8.615850e-47 |
| Msa0340450 | Msa0960720 | 0.803761 | 2.987431e-49 | -8.615850e-47 |
| Msa0960640 | Msa0960720 | 0.816925 | 4.300658e-52 | -8.615850e-47 |
| Msa0960720 | Msa0974080 | 0.811059 | 8.458171e-51 | -8.615850e-47 |
| Msa0960720 | Msa0994030 | 0.828648 | 7.999638e-55 | -8.615850e-47 |
| Msa0960720 | Msa1000180 | 0.803258 | 3.798278e-49 | -8.615850e-47 |
| Msa0960720 | Msa1000240 | 0.814388 | 1.580538e-51 | -8.615850e-47 |
| Msa0960720 | Msa1113170 | 0.821147 | 4.711582e-53 | -8.615850e-47 |
| Msa0960720 | Msa1282580 | -0.802092 | 6.609933e-49 | -8.615850e-47 |
| Msa0960720 | Msa1286760 | 0.811011 | 8.663305e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGTTTGCAAGTGCTTAA+AGG | 0.207072 | 6_3:+80698927 | Msa0960720:CDS |
| GTTGCAGATGGAAAAGAAAT+TGG | 0.227732 | 6_3:+80703001 | Msa0960720:CDS |
| GTTCCTTATCTAAGTTTCTA+TGG | 0.320711 | 6_3:+80703316 | Msa0960720:CDS |
| TTATGAAACGTGTATAGTTT+TGG | 0.339930 | 6_3:-80698970 | None:intergenic |
| TACTTTGGTGTTGCCACGTT+GGG | 0.376587 | 6_3:+80699780 | Msa0960720:CDS |
| TGCCAACAAATCTTCTCGTC+TGG | 0.391741 | 6_3:+80703165 | Msa0960720:CDS |
| CAAAGTCCTAGGGGCCGTTA+TGG | 0.401573 | 6_3:+80703112 | Msa0960720:CDS |
| CTATCCGTGGGTTGCTTGAA+AGG | 0.423213 | 6_3:+80699723 | Msa0960720:CDS |
| GGAACCTGTACAAAGATTGC+AGG | 0.439127 | 6_3:+80703186 | Msa0960720:CDS |
| GGCCGTTATGGTAGCTGTTA+CGG | 0.443522 | 6_3:+80703124 | Msa0960720:CDS |
| CAGCAGCGTGGGTGATTACA+TGG | 0.465712 | 6_3:+80702971 | Msa0960720:CDS |
| TTCCAGACGAGAAGATTTGT+TGG | 0.469806 | 6_3:-80703167 | None:intergenic |
| CTTATCTAAGTTTCTATGGT+CGG | 0.477994 | 6_3:+80703320 | Msa0960720:CDS |
| TTGAAGCATCAACACAATCA+TGG | 0.484649 | 6_3:-80698886 | None:intergenic |
| TTTGCAGCTCAGTTATACTT+TGG | 0.487341 | 6_3:+80699765 | Msa0960720:CDS |
| AAAAGCGAAAGCAAAGTCCT+AGG | 0.490928 | 6_3:+80703101 | Msa0960720:intron |
| TTTGCATTGTTCACTATCCG+TGG | 0.496193 | 6_3:+80699710 | Msa0960720:CDS |
| AATACCTGCAATCTTTGTAC+AGG | 0.501645 | 6_3:-80703190 | None:intergenic |
| CATGGATCTTATGTTGCAGA+TGG | 0.501705 | 6_3:+80702989 | Msa0960720:CDS |
| GCTGTTACGGAGGCTGTGAT+AGG | 0.522603 | 6_3:+80703137 | Msa0960720:CDS |
| TATCCGTGGGTTGCTTGAAA+GGG | 0.527104 | 6_3:+80699724 | Msa0960720:CDS |
| AAAGCGAAAGCAAAGTCCTA+GGG | 0.529852 | 6_3:+80703102 | Msa0960720:intron |
| CGACCATAGAAACTTAGATA+AGG | 0.536217 | 6_3:-80703319 | None:intergenic |
| CAGCTACCATAACGGCCCCT+AGG | 0.553708 | 6_3:-80703118 | None:intergenic |
| TTGCATTGTTCACTATCCGT+GGG | 0.555607 | 6_3:+80699711 | Msa0960720:CDS |
| CGTTATGGTAGCTGTTACGG+AGG | 0.578401 | 6_3:+80703127 | Msa0960720:CDS |
| AAGAATCACAACAGCAGCGT+GGG | 0.592379 | 6_3:+80702960 | Msa0960720:CDS |
| ATTCCCTTTCAAGCAACCCA+CGG | 0.594635 | 6_3:-80699727 | None:intergenic |
| CTCCGTAACAGCTACCATAA+CGG | 0.602290 | 6_3:-80703126 | None:intergenic |
| ATACTTTGGTGTTGCCACGT+TGG | 0.659630 | 6_3:+80699779 | Msa0960720:CDS |
| GAAGAATCACAACAGCAGCG+TGG | 0.691167 | 6_3:+80702959 | Msa0960720:CDS |
| AAGCGAAAGCAAAGTCCTAG+GGG | 0.696913 | 6_3:+80703103 | Msa0960720:intron |
| TATTCAATTCATACCCAACG+TGG | 0.737190 | 6_3:-80699793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAAAATTTATAATGAA+AGG | + | chr6_3:80700015-80700034 | Msa0960720:intron | 10.0% |
| !! | TCATTAATTATGATTCAAAT+TGG | + | chr6_3:80699006-80699025 | Msa0960720:intron | 15.0% |
| !! | AATGTAGAAATATATTACTT+TGG | - | chr6_3:80699659-80699678 | None:intergenic | 15.0% |
| !! | TAATAATACAAGTTATAGAA+GGG | - | chr6_3:80700720-80700739 | None:intergenic | 15.0% |
| !! | ATAATAATACAAGTTATAGA+AGG | - | chr6_3:80700721-80700740 | None:intergenic | 15.0% |
| !! | TATTATTATTATTCTCTTTC+TGG | + | chr6_3:80700732-80700751 | Msa0960720:intron | 15.0% |
| !! | TTTAATAACCTAAAGTTATA+TGG | + | chr6_3:80701765-80701784 | Msa0960720:intron | 15.0% |
| !! | AACTATTATGAAAAATTTAG+AGG | + | chr6_3:80702559-80702578 | Msa0960720:intron | 15.0% |
| !! | TAAATTATCCATACGTTTAT+AGG | - | chr6_3:80699075-80699094 | None:intergenic | 20.0% |
| !!! | AAAATTCAATTTGATAGCTA+TGG | - | chr6_3:80699351-80699370 | None:intergenic | 20.0% |
| !! | CAATTAAAGTTCAATTTCTT+AGG | - | chr6_3:80699468-80699487 | None:intergenic | 20.0% |
| !! | CTAAGAAATTGAACTTTAAT+TGG | + | chr6_3:80699466-80699485 | Msa0960720:intron | 20.0% |
| !!! | AATATATTTCTACATTTGTC+AGG | + | chr6_3:80699663-80699682 | Msa0960720:intron | 20.0% |
| !! | ATATTTGGTAGAACTAAAAA+TGG | + | chr6_3:80699972-80699991 | Msa0960720:intron | 20.0% |
| !!! | ATTTACATGTACTTCTAAAA+TGG | - | chr6_3:80700436-80700455 | None:intergenic | 20.0% |
| !!! | TTAGAAGTACATGTAAATTA+TGG | + | chr6_3:80700438-80700457 | Msa0960720:intron | 20.0% |
| !! | CATTAAATATACATTATCCA+AGG | - | chr6_3:80700471-80700490 | None:intergenic | 20.0% |
| !!! | TTTATCAGATGAAATTTTTC+AGG | + | chr6_3:80701076-80701095 | Msa0960720:intron | 20.0% |
| !! | TATGAAGTTTGTATTTGTAA+AGG | - | chr6_3:80701551-80701570 | None:intergenic | 20.0% |
| !! | ATTACTAATTACTGATACAA+AGG | - | chr6_3:80701575-80701594 | None:intergenic | 20.0% |
| !!! | TGATGTAATAGAGAAATTTT+TGG | + | chr6_3:80701594-80701613 | Msa0960720:intron | 20.0% |
| !! | ATTAAAGTTAATTCATAGGA+AGG | - | chr6_3:80701751-80701770 | None:intergenic | 20.0% |
| !! | GGTTATTAAAGTTAATTCAT+AGG | - | chr6_3:80701755-80701774 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTATAATCTATTC+TGG | + | chr6_3:80701828-80701847 | Msa0960720:intron | 20.0% |
| !!! | TTATGCATTTAACTTGTAAA+GGG | - | chr6_3:80702873-80702892 | None:intergenic | 20.0% |
| !!! | TTTATGCATTTAACTTGTAA+AGG | - | chr6_3:80702874-80702893 | None:intergenic | 20.0% |
| !! | AAATACAATATACATTCTTG+AGG | - | chr6_3:80702901-80702920 | None:intergenic | 20.0% |
| !! | TTATGAAACGTGTATAGTTT+TGG | - | chr6_3:80698973-80698992 | None:intergenic | 25.0% |
| !!! | ATGAGTTAAATGCTTTGTTT+TGG | + | chr6_3:80699207-80699226 | Msa0960720:intron | 25.0% |
| ! | TTATTACATAAGAAGCAATC+AGG | + | chr6_3:80699378-80699397 | Msa0960720:intron | 25.0% |
| ! | ATTAAAGGGTTCAATTAAAG+TGG | - | chr6_3:80699492-80699511 | None:intergenic | 25.0% |
| ! | TTTAATTGAACCCTTTAATC+AGG | + | chr6_3:80699493-80699512 | Msa0960720:intron | 25.0% |
| ! | ACTTGTAACAACATTAATCT+TGG | - | chr6_3:80699569-80699588 | None:intergenic | 25.0% |
| ! | AAATATACATTATCCAAGGT+TGG | - | chr6_3:80700467-80700486 | None:intergenic | 25.0% |
| ! | TTATTATTCTCTTTCTGGAT+CGG | + | chr6_3:80700737-80700756 | Msa0960720:intron | 25.0% |
| !! | TTGAAATTTGAAACGACTAA+TGG | - | chr6_3:80700976-80700995 | None:intergenic | 25.0% |
| !! | ATAATAATACAAGTTTGCTC+AGG | - | chr6_3:80701121-80701140 | None:intergenic | 25.0% |
| ! | TTGTTGCAAATAGCTTAAAA+TGG | + | chr6_3:80701186-80701205 | Msa0960720:intron | 25.0% |
| !!! | TGATTTTGTAGTTTTAGATG+TGG | + | chr6_3:80701484-80701503 | Msa0960720:intron | 25.0% |
| !! | GTGGATTTTATCTTGAATTT+TGG | + | chr6_3:80701503-80701522 | Msa0960720:intron | 25.0% |
| ! | CTAAAACACCATATAACTTT+AGG | - | chr6_3:80701776-80701795 | None:intergenic | 25.0% |
| ! | ACTTCAATATCAAATCCATA+TGG | + | chr6_3:80701915-80701934 | Msa0960720:intron | 25.0% |
| ! | TATCAAATCCATATGGAATT+TGG | + | chr6_3:80701922-80701941 | Msa0960720:intron | 25.0% |
| ! | ATTCATTTACGAACAGAATT+TGG | - | chr6_3:80702305-80702324 | None:intergenic | 25.0% |
| !! | TTTGAAGTGATTTGAAAACA+AGG | + | chr6_3:80702324-80702343 | Msa0960720:intron | 25.0% |
| ! | TGATTTGAAAACAAGGAATA+AGG | + | chr6_3:80702331-80702350 | Msa0960720:intron | 25.0% |
| !! | AATATGTATCTAAGTGCTTT+TGG | + | chr6_3:80702367-80702386 | Msa0960720:intron | 25.0% |
| !! | TCACAAGAAAATATGTTTTG+TGG | + | chr6_3:80702511-80702530 | Msa0960720:intron | 25.0% |
| !! | CACAAGAAAATATGTTTTGT+GGG | + | chr6_3:80702512-80702531 | Msa0960720:intron | 25.0% |
| ! | AAATTTAGAGGTTAATGAGT+TGG | + | chr6_3:80702571-80702590 | Msa0960720:intron | 25.0% |
| ! | AAAAGAGACTAAGAACAATT+TGG | - | chr6_3:80702721-80702740 | None:intergenic | 25.0% |
| !!! | AGGGTTATGTATTTCTTTTT+TGG | + | chr6_3:80703294-80703313 | Msa0960720:CDS | 25.0% |
| CTTATATCTCACCTAACTAA+TGG | + | chr6_3:80699031-80699050 | Msa0960720:intron | 30.0% | |
| ! | ATTTGAATGCTTGTTACCTT+CGG | + | chr6_3:80699315-80699334 | Msa0960720:intron | 30.0% |
| TTAGGTTCTGTATGACTAAA+GGG | - | chr6_3:80699450-80699469 | None:intergenic | 30.0% | |
| ACAGAACCTAAGAAATTGAA+CGG | + | chr6_3:80699459-80699478 | Msa0960720:intron | 30.0% | |
| AGTGAACAATGCAAAAAGAA+AGG | - | chr6_3:80699705-80699724 | None:intergenic | 30.0% | |
| TGTGTTCTGACATAGATATT+TGG | + | chr6_3:80699957-80699976 | Msa0960720:intron | 30.0% | |
| TGGTAGAACTAAAAATGGAA+TGG | + | chr6_3:80699977-80699996 | Msa0960720:intron | 30.0% | |
| GGTAGAACTAAAAATGGAAT+GGG | + | chr6_3:80699978-80699997 | Msa0960720:intron | 30.0% | |
| TTTATGTAAATGTGCATACC+AGG | + | chr6_3:80700095-80700114 | Msa0960720:intron | 30.0% | |
| CAAAAGGATCTCATAAATGT+CGG | - | chr6_3:80700219-80700238 | None:intergenic | 30.0% | |
| !! | TACATCAAGAATGCTGATTT+GGG | - | chr6_3:80700270-80700289 | None:intergenic | 30.0% |
| ! | AGACCTGGTGTAAATTTTTA+TGG | + | chr6_3:80700324-80700343 | Msa0960720:intron | 30.0% |
| GAAGTACATGTAAATTATGG+AGG | + | chr6_3:80700441-80700460 | Msa0960720:intron | 30.0% | |
| ! | TTTCTGAAAAAGCCAATATC+AGG | + | chr6_3:80700505-80700524 | Msa0960720:intron | 30.0% |
| AAGATCAAAGTTCCTGATAT+TGG | - | chr6_3:80700520-80700539 | None:intergenic | 30.0% | |
| CAGTTTAGCATAAGAAACAT+TGG | - | chr6_3:80700576-80700595 | None:intergenic | 30.0% | |
| !! | ACCAATATTTGTTTTCCAAC+AGG | + | chr6_3:80700621-80700640 | Msa0960720:intron | 30.0% |
| TCCTGTTGGAAAACAAATAT+TGG | - | chr6_3:80700625-80700644 | None:intergenic | 30.0% | |
| AGAAATTATTTCCCGTGATT+TGG | - | chr6_3:80700677-80700696 | None:intergenic | 30.0% | |
| GACTACTTTCTCATTTGAAT+CGG | - | chr6_3:80700764-80700783 | None:intergenic | 30.0% | |
| ! | AGTAGTCAATTTGTTTGTCT+AGG | + | chr6_3:80700777-80700796 | Msa0960720:intron | 30.0% |
| ! | GTAGTCAATTTGTTTGTCTA+GGG | + | chr6_3:80700778-80700797 | Msa0960720:intron | 30.0% |
| ! | TATTTGATGTGATCTGAGAT+TGG | + | chr6_3:80700842-80700861 | Msa0960720:intron | 30.0% |
| CTGAGATTGGAAGAAATTAA+AGG | + | chr6_3:80700855-80700874 | Msa0960720:intron | 30.0% | |
| ! | AGTGATTTCTGTTATTGACT+CGG | + | chr6_3:80700948-80700967 | Msa0960720:intron | 30.0% |
| ACAGATCAAATAAATAAGCC+AGG | + | chr6_3:80700995-80701014 | Msa0960720:intron | 30.0% | |
| TCTGATAAAATGAGAGTTCA+TGG | - | chr6_3:80701065-80701084 | None:intergenic | 30.0% | |
| AAATCAACAAGTGGATATGT+TGG | - | chr6_3:80701168-80701187 | None:intergenic | 30.0% | |
| ATTTGCAACAAATCAACAAG+TGG | - | chr6_3:80701177-80701196 | None:intergenic | 30.0% | |
| AGATCTTGAATACTTGTAAG+AGG | + | chr6_3:80701435-80701454 | Msa0960720:intron | 30.0% | |
| AAGTTCAAAAAACACATAGC+AGG | - | chr6_3:80701714-80701733 | None:intergenic | 30.0% | |
| CTGATCTAGCGAAAAAATTA+AGG | - | chr6_3:80701889-80701908 | None:intergenic | 30.0% | |
| !!! | CTTAATTTTTTCGCTAGATC+AGG | + | chr6_3:80701887-80701906 | Msa0960720:intron | 30.0% |
| TGGATTTGATATTGAAGTTC+AGG | - | chr6_3:80701913-80701932 | None:intergenic | 30.0% | |
| !!! | TTCAGTTTTAGACTTTTAGC+TGG | + | chr6_3:80702390-80702409 | Msa0960720:intron | 30.0% |
| !! | TTTTAGACTTTTAGCTGGTA+GGG | + | chr6_3:80702395-80702414 | Msa0960720:intron | 30.0% |
| !! | CTTTTAAAGAAGCATATCCT+TGG | + | chr6_3:80702424-80702443 | Msa0960720:intron | 30.0% |
| TTCTTGTGACATCAACTATT+CGG | - | chr6_3:80702500-80702519 | None:intergenic | 30.0% | |
| ! | GTTTTATCCGAGAACATATT+TGG | - | chr6_3:80702599-80702618 | None:intergenic | 30.0% |
| TGTTCTCGGATAAAACATTA+TGG | + | chr6_3:80702603-80702622 | Msa0960720:intron | 30.0% | |
| ! | TCCTATTTCACACTTTTCAA+AGG | + | chr6_3:80702751-80702770 | Msa0960720:intron | 30.0% |
| ! | ACCTTTGAAAAGTGTGAAAT+AGG | - | chr6_3:80702755-80702774 | None:intergenic | 30.0% |
| GAGTTATAGACTAATTGCAA+CGG | + | chr6_3:80702791-80702810 | Msa0960720:intron | 30.0% | |
| ! | CCTATTGATAGCTGAATAAT+GGG | + | chr6_3:80702927-80702946 | Msa0960720:intron | 30.0% |
| ! | TTCTTGTATTGCTATTGTGT+AGG | + | chr6_3:80703269-80703288 | Msa0960720:intron | 30.0% |
| GTTCCTTATCTAAGTTTCTA+TGG | + | chr6_3:80703316-80703335 | Msa0960720:CDS | 30.0% | |
| CTTATCTAAGTTTCTATGGT+CGG | + | chr6_3:80703320-80703339 | Msa0960720:CDS | 30.0% | |
| ! | GAAAACATGTGCCATTAGTT+AGG | - | chr6_3:80699045-80699064 | None:intergenic | 35.0% |
| CTGTGTAACCTATAAACGTA+TGG | + | chr6_3:80699064-80699083 | Msa0960720:intron | 35.0% | |
| AATCAGGTCTGGTAAAAGTT+TGG | + | chr6_3:80699394-80699413 | Msa0960720:intron | 35.0% | |
| ATCAGGTCTGGTAAAAGTTT+GGG | + | chr6_3:80699395-80699414 | Msa0960720:intron | 35.0% | |
| TATGACTAAAGGGTTATAGC+TGG | - | chr6_3:80699440-80699459 | None:intergenic | 35.0% | |
| CTTAGGTTCTGTATGACTAA+AGG | - | chr6_3:80699451-80699470 | None:intergenic | 35.0% | |
| TCTTAGGTTCTGTATGAAAG+TGG | - | chr6_3:80699534-80699553 | None:intergenic | 35.0% | |
| TTGGATCCGTTCAATTTCTT+AGG | - | chr6_3:80699550-80699569 | None:intergenic | 35.0% | |
| AAAAGAAAGGCCACTACAAA+TGG | - | chr6_3:80699692-80699711 | None:intergenic | 35.0% | |
| TTTGCAGCTCAGTTATACTT+TGG | + | chr6_3:80699765-80699784 | Msa0960720:CDS | 35.0% | |
| TATTCAATTCATACCCAACG+TGG | - | chr6_3:80699796-80699815 | None:intergenic | 35.0% | |
| ATAATCTAAGTCCTCATCAG+CGG | - | chr6_3:80699874-80699893 | None:intergenic | 35.0% | |
| !!! | ACTGTTTTTGCCGCATTTTT+GGG | - | chr6_3:80699927-80699946 | None:intergenic | 35.0% |
| AGGTCTGCAAGAAATTATGT+GGG | + | chr6_3:80700172-80700191 | Msa0960720:intron | 35.0% | |
| !!! | AAGAATGCTGATTTGGGTTT+TGG | - | chr6_3:80700264-80700283 | None:intergenic | 35.0% |
| ! | CTACATCAAGAATGCTGATT+TGG | - | chr6_3:80700271-80700290 | None:intergenic | 35.0% |
| TCACAATATCAAAACCAGAG+CGG | - | chr6_3:80700305-80700324 | None:intergenic | 35.0% | |
| CCTCCATAAAAATTTACACC+AGG | - | chr6_3:80700330-80700349 | None:intergenic | 35.0% | |
| ! | CCTGGTGTAAATTTTTATGG+AGG | + | chr6_3:80700327-80700346 | Msa0960720:intron | 35.0% |
| TTTCATTCCTGTACGTTTAG+AGG | + | chr6_3:80700385-80700404 | Msa0960720:intron | 35.0% | |
| AAACTGACAGAAACTACATG+AGG | + | chr6_3:80700590-80700609 | Msa0960720:intron | 35.0% | |
| ! | TTGGTTAAAGCACCAAATCA+CGG | + | chr6_3:80700662-80700681 | Msa0960720:intron | 35.0% |
| CACGGGAAATAATTTCTTTC+TGG | + | chr6_3:80700680-80700699 | Msa0960720:intron | 35.0% | |
| TCTATTCTGTATAATGGTCC+TGG | - | chr6_3:80701016-80701035 | None:intergenic | 35.0% | |
| GTGCGTTCTATTCTGTATAA+TGG | - | chr6_3:80701022-80701041 | None:intergenic | 35.0% | |
| AAAATGAGAGTTCATGGTGA+TGG | - | chr6_3:80701059-80701078 | None:intergenic | 35.0% | |
| !! | TGACTTAGAAGTGTTTCCTT+TGG | + | chr6_3:80701245-80701264 | Msa0960720:intron | 35.0% |
| TTCAAAAAACACATAGCAGG+TGG | - | chr6_3:80701711-80701730 | None:intergenic | 35.0% | |
| AATTTGGTAGAGTCCTATGA+GGG | + | chr6_3:80701938-80701957 | Msa0960720:intron | 35.0% | |
| TGTTCTTTCAGAATGTAAGC+TGG | + | chr6_3:80701961-80701980 | Msa0960720:intron | 35.0% | |
| !! | ACAAGTTGATAAATTGTCGC+AGG | + | chr6_3:80702023-80702042 | Msa0960720:intron | 35.0% |
| TTGCTAAACTTGTATCGTAC+AGG | + | chr6_3:80702180-80702199 | Msa0960720:intron | 35.0% | |
| !! | GTTTTAGACTTTTAGCTGGT+AGG | + | chr6_3:80702394-80702413 | Msa0960720:intron | 35.0% |
| ACAGATTGCAAAAACAGCTT+TGG | - | chr6_3:80702456-80702475 | None:intergenic | 35.0% | |
| GTTGGATCCAAATATGTTCT+CGG | + | chr6_3:80702589-80702608 | Msa0960720:intron | 35.0% | |
| GGTTGTTGTACTGTTATCTA+CGG | + | chr6_3:80702682-80702701 | Msa0960720:intron | 35.0% | |
| CAACGGTATAATAACTGAAG+AGG | + | chr6_3:80702808-80702827 | Msa0960720:intron | 35.0% | |
| ! | GCCTATTGATAGCTGAATAA+TGG | + | chr6_3:80702926-80702945 | Msa0960720:intron | 35.0% |
| CCCATTATTCAGCTATCAAT+AGG | - | chr6_3:80702930-80702949 | None:intergenic | 35.0% | |
| GTTGCAGATGGAAAAGAAAT+TGG | + | chr6_3:80703001-80703020 | Msa0960720:CDS | 35.0% | |
| ! | CTGTTGATGAATGCATGATT+TGG | + | chr6_3:80703026-80703045 | Msa0960720:intron | 35.0% |
| !! | CTTTCGCTTTTAATGATAGC+AGG | - | chr6_3:80703092-80703111 | None:intergenic | 35.0% |
| AATACCTGCAATCTTTGTAC+AGG | - | chr6_3:80703193-80703212 | None:intergenic | 35.0% | |
| AAGATTGCAGGTATTCACAA+AGG | + | chr6_3:80703198-80703217 | Msa0960720:intron | 35.0% | |
| ! | TATTGCTATTGTGTAGGTCA+GGG | + | chr6_3:80703275-80703294 | Msa0960720:intron | 35.0% |
| CGACCATAGAAACTTAGATA+AGG | - | chr6_3:80703322-80703341 | None:intergenic | 35.0% | |
| CTGAGTTTGCAAGTGCTTAA+AGG | + | chr6_3:80698927-80698946 | Msa0960720:CDS | 40.0% | |
| ACATAAGAAGCAATCAGGTC+TGG | + | chr6_3:80699383-80699402 | Msa0960720:intron | 40.0% | |
| TTGAACCCTTTAATCAGGTG+TGG | + | chr6_3:80699498-80699517 | Msa0960720:intron | 40.0% | |
| TTCCACCACACCTGATTAAA+GGG | - | chr6_3:80699506-80699525 | None:intergenic | 40.0% | |
| TGTCAGGAAACCATTTGTAG+TGG | + | chr6_3:80699679-80699698 | Msa0960720:intron | 40.0% | |
| TTTGCATTGTTCACTATCCG+TGG | + | chr6_3:80699710-80699729 | Msa0960720:CDS | 40.0% | |
| TTGCATTGTTCACTATCCGT+GGG | + | chr6_3:80699711-80699730 | Msa0960720:CDS | 40.0% | |
| !!! | CTGTTTTTGCCGCATTTTTG+GGG | - | chr6_3:80699926-80699945 | None:intergenic | 40.0% |
| !!! | GACTGTTTTTGCCGCATTTT+TGG | - | chr6_3:80699928-80699947 | None:intergenic | 40.0% |
| CAGGTCTGCAAGAAATTATG+TGG | + | chr6_3:80700171-80700190 | Msa0960720:intron | 40.0% | |
| AAAGTCACGACTCTTGCAAA+AGG | - | chr6_3:80700235-80700254 | None:intergenic | 40.0% | |
| !! | GGTTTTGATATTGTGAGACC+TGG | + | chr6_3:80700309-80700328 | Msa0960720:intron | 40.0% |
| TAAATTATGGAGGCCAACCT+TGG | + | chr6_3:80700451-80700470 | Msa0960720:intron | 40.0% | |
| ! | TTGTTTTCCAACAGGAACAG+AGG | + | chr6_3:80700629-80700648 | Msa0960720:intron | 40.0% |
| ! | TGTTTTCCAACAGGAACAGA+GGG | + | chr6_3:80700630-80700649 | Msa0960720:intron | 40.0% |
| ! | TGGTTAAAGCACCAAATCAC+GGG | + | chr6_3:80700663-80700682 | Msa0960720:intron | 40.0% |
| AGGGCTATGAAAAAGTAGTC+TGG | + | chr6_3:80700797-80700816 | Msa0960720:intron | 40.0% | |
| ACTAGAAAAGAGAGGAGTCA+AGG | + | chr6_3:80700922-80700941 | Msa0960720:intron | 40.0% | |
| CTCAGGACATACATCATATG+TGG | - | chr6_3:80701104-80701123 | None:intergenic | 40.0% | |
| TTGTTGTGTGTGTACAACTC+AGG | - | chr6_3:80701325-80701344 | None:intergenic | 40.0% | |
| TGAGCAGAGACAGCAATTTA+AGG | + | chr6_3:80701629-80701648 | Msa0960720:intron | 40.0% | |
| GAGCAGAGACAGCAATTTAA+GGG | + | chr6_3:80701630-80701649 | Msa0960720:intron | 40.0% | |
| GGACTCTACCAAATTCCATA+TGG | - | chr6_3:80701933-80701952 | None:intergenic | 40.0% | |
| GAATTTGGTAGAGTCCTATG+AGG | + | chr6_3:80701937-80701956 | Msa0960720:intron | 40.0% | |
| ! | TTCTGAAAGAACACCCTCAT+AGG | - | chr6_3:80701954-80701973 | None:intergenic | 40.0% |
| TGAGCTCCAAGTTTGTCATT+GGG | - | chr6_3:80702004-80702023 | None:intergenic | 40.0% | |
| !!! | CTGCTATTTTCTGTGATTCG+CGG | + | chr6_3:80702101-80702120 | Msa0960720:intron | 40.0% |
| AAGTACGAACACACACGATT+AGG | - | chr6_3:80702227-80702246 | None:intergenic | 40.0% | |
| ! | GATTGCAAAAACAGCTTTGG+AGG | - | chr6_3:80702453-80702472 | None:intergenic | 40.0% |
| CATGGATCTTATGTTGCAGA+TGG | + | chr6_3:80702989-80703008 | Msa0960720:CDS | 40.0% | |
| AAAAGCGAAAGCAAAGTCCT+AGG | + | chr6_3:80703101-80703120 | Msa0960720:intron | 40.0% | |
| AAAGCGAAAGCAAAGTCCTA+GGG | + | chr6_3:80703102-80703121 | Msa0960720:intron | 40.0% | |
| TTCCAGACGAGAAGATTTGT+TGG | - | chr6_3:80703170-80703189 | None:intergenic | 40.0% | |
| AAGCTCTACAAGTAGTTAGC+TGG | + | chr6_3:80703227-80703246 | Msa0960720:intron | 40.0% | |
| ! | GTATTGCTATTGTGTAGGTC+AGG | + | chr6_3:80703274-80703293 | Msa0960720:intron | 40.0% |
| ! | AATGCTTGTTACCTTCGGAG+AGG | + | chr6_3:80699320-80699339 | Msa0960720:intron | 45.0% |
| GACTAAAGGGTTATAGCTGG+AGG | - | chr6_3:80699437-80699456 | None:intergenic | 45.0% | |
| AACCCTTTAATCAGGTGTGG+TGG | + | chr6_3:80699501-80699520 | Msa0960720:intron | 45.0% | |
| CTTCCACCACACCTGATTAA+AGG | - | chr6_3:80699507-80699526 | None:intergenic | 45.0% | |
| ! | TAATCAGGTGTGGTGGAAGT+TGG | + | chr6_3:80699508-80699527 | Msa0960720:intron | 45.0% |
| ! | TATCCGTGGGTTGCTTGAAA+GGG | + | chr6_3:80699724-80699743 | Msa0960720:CDS | 45.0% |
| ATTCCCTTTCAAGCAACCCA+CGG | - | chr6_3:80699730-80699749 | None:intergenic | 45.0% | |
| !! | ATACTTTGGTGTTGCCACGT+TGG | + | chr6_3:80699779-80699798 | Msa0960720:CDS | 45.0% |
| !! | TACTTTGGTGTTGCCACGTT+GGG | + | chr6_3:80699780-80699799 | Msa0960720:CDS | 45.0% |
| GAAATACGTCGAGCTGTAGA+AGG | - | chr6_3:80699830-80699849 | None:intergenic | 45.0% | |
| ! | GAAGGCATGGATAGAACGAA+AGG | - | chr6_3:80699852-80699871 | None:intergenic | 45.0% |
| ACTTCATAGTCGCTTCAACC+TGG | - | chr6_3:80700116-80700135 | None:intergenic | 45.0% | |
| CTGAGTTTCTCTGTCCTTAC+TGG | + | chr6_3:80700137-80700156 | Msa0960720:intron | 45.0% | |
| CTGAAAGCTCGTTTCCAGTA+AGG | - | chr6_3:80700154-80700173 | None:intergenic | 45.0% | |
| CTTACTGGAAACGAGCTTTC+AGG | + | chr6_3:80700152-80700171 | Msa0960720:intron | 45.0% | |
| TAGTACTCAATGTACCGCTC+TGG | + | chr6_3:80700288-80700307 | Msa0960720:intron | 45.0% | |
| ATGCATGCCTCTAAACGTAC+AGG | - | chr6_3:80700395-80700414 | None:intergenic | 45.0% | |
| ! | GTTTTCCAACAGGAACAGAG+GGG | + | chr6_3:80700631-80700650 | Msa0960720:intron | 45.0% |
| GAACAGAGGGGATTTCAGAT+TGG | + | chr6_3:80700643-80700662 | Msa0960720:intron | 45.0% | |
| !! | TGAGAGTTCATGGTGATGGA+AGG | - | chr6_3:80701055-80701074 | None:intergenic | 45.0% |
| CAGCTCATGAAGTTGTTACG+AGG | + | chr6_3:80701395-80701414 | Msa0960720:intron | 45.0% | |
| !! | TGTAAGCTGGTATTGATGCG+TGG | + | chr6_3:80701974-80701993 | Msa0960720:intron | 45.0% |
| GTGAGCTCCAAGTTTGTCAT+TGG | - | chr6_3:80702005-80702024 | None:intergenic | 45.0% | |
| CGCGGTTGACATCATATTGT+AGG | + | chr6_3:80702119-80702138 | Msa0960720:intron | 45.0% | |
| !! | AACAGCTTTGGAGGTATCCA+AGG | - | chr6_3:80702444-80702463 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr6_3:80702652-80702671 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr6_3:80702653-80702672 | None:intergenic | 45.0% |
| ! | GGATAAGGCTTGGTTGTTGT+TGG | + | chr6_3:80702661-80702680 | Msa0960720:intron | 45.0% |
| AAGAATCACAACAGCAGCGT+GGG | + | chr6_3:80702960-80702979 | Msa0960720:CDS | 45.0% | |
| AAGCGAAAGCAAAGTCCTAG+GGG | + | chr6_3:80703103-80703122 | Msa0960720:intron | 45.0% | |
| CTCCGTAACAGCTACCATAA+CGG | - | chr6_3:80703129-80703148 | None:intergenic | 45.0% | |
| TGCCAACAAATCTTCTCGTC+TGG | + | chr6_3:80703165-80703184 | Msa0960720:CDS | 45.0% | |
| GGAACCTGTACAAAGATTGC+AGG | + | chr6_3:80703186-80703205 | Msa0960720:CDS | 45.0% | |
| CATGTGTGCTGAGAAGCTAG+TGG | - | chr6_3:80699178-80699197 | None:intergenic | 50.0% | |
| CTAGCTTCTCAGCACACATG+AGG | + | chr6_3:80699178-80699197 | Msa0960720:intron | 50.0% | |
| GTTTGGGAATCCATCTCTCG+CGG | + | chr6_3:80699411-80699430 | Msa0960720:intron | 50.0% | |
| ! | CTATCCGTGGGTTGCTTGAA+AGG | + | chr6_3:80699723-80699742 | Msa0960720:CDS | 50.0% |
| TCTAAGTCCTCATCAGCGGA+AGG | - | chr6_3:80699870-80699889 | None:intergenic | 50.0% | |
| GTCCCATCTCCCCAAAAATG+CGG | + | chr6_3:80699914-80699933 | Msa0960720:intron | 50.0% | |
| !! | TGCCGCATTTTTGGGGAGAT+GGG | - | chr6_3:80699919-80699938 | None:intergenic | 50.0% |
| !! | TTGCCGCATTTTTGGGGAGA+TGG | - | chr6_3:80699920-80699939 | None:intergenic | 50.0% |
| GAAATCCCCTCTGTTCCTGT+TGG | - | chr6_3:80700639-80700658 | None:intergenic | 50.0% | |
| GAAGCTAACACTGCAGAGTG+CGG | + | chr6_3:80700895-80700914 | Msa0960720:intron | 50.0% | |
| GCGGCATGACTAGAAAAGAG+AGG | + | chr6_3:80700914-80700933 | Msa0960720:intron | 50.0% | |
| !! | AAGCTGGTATTGATGCGTGG+AGG | + | chr6_3:80701977-80701996 | Msa0960720:intron | 50.0% |
| !! | AGCTGGTATTGATGCGTGGA+GGG | + | chr6_3:80701978-80701997 | Msa0960720:intron | 50.0% |
| !! | TGTGGGAGCACTGTTATCTG+TGG | + | chr6_3:80702529-80702548 | Msa0960720:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr6_3:80702648-80702667 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr6_3:80702654-80702673 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr6_3:80702651-80702670 | Msa0960720:intron | 50.0% | |
| GAAGAATCACAACAGCAGCG+TGG | + | chr6_3:80702959-80702978 | Msa0960720:CDS | 50.0% | |
| GGAAAGTGACAGCAGTACAG+AGG | - | chr6_3:80703071-80703090 | None:intergenic | 50.0% | |
| GGCCGTTATGGTAGCTGTTA+CGG | + | chr6_3:80703124-80703143 | Msa0960720:CDS | 50.0% | |
| CGTTATGGTAGCTGTTACGG+AGG | + | chr6_3:80703127-80703146 | Msa0960720:CDS | 50.0% | |
| CTATGGCTTCTCCTCTCCGA+AGG | - | chr6_3:80699334-80699353 | None:intergenic | 55.0% | |
| ATCCATGCCTTCCGCTGATG+AGG | + | chr6_3:80699860-80699879 | Msa0960720:intron | 55.0% | |
| GCAGCAGCACGAGTATCCAA+AGG | - | chr6_3:80701264-80701283 | None:intergenic | 55.0% | |
| GGAGGGCCCAATGACAAACT+TGG | + | chr6_3:80701995-80702014 | Msa0960720:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr6_3:80702639-80702658 | Msa0960720:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr6_3:80702640-80702659 | Msa0960720:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr6_3:80702646-80702665 | Msa0960720:intron | 55.0% | |
| CAGCAGCGTGGGTGATTACA+TGG | + | chr6_3:80702971-80702990 | Msa0960720:CDS | 55.0% | |
| CAAAGTCCTAGGGGCCGTTA+TGG | + | chr6_3:80703112-80703131 | Msa0960720:CDS | 55.0% | |
| GCTGTTACGGAGGCTGTGAT+AGG | + | chr6_3:80703137-80703156 | Msa0960720:CDS | 55.0% | |
| GTCCTCATCAGCGGAAGGCA+TGG | - | chr6_3:80699865-80699884 | None:intergenic | 60.0% | |
| CAGCTACCATAACGGCCCCT+AGG | - | chr6_3:80703121-80703140 | None:intergenic | 60.0% | |
| TAGCTGGAGGCCGCGAGAGA+TGG | - | chr6_3:80699424-80699443 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 80698888 | 80703357 | 80698888 | ID=Msa0960720;Name=Msa0960720 |
| chr6_3 | mRNA | 80698888 | 80703357 | 80698888 | ID=Msa0960720-mRNA-1;Parent=Msa0960720;Name=Msa0960720-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.8|0.5|0.4|5|0|146 |
| chr6_3 | exon | 80698888 | 80698983 | 80698888 | ID=Msa0960720-mRNA-1:exon:14492;Parent=Msa0960720-mRNA-1 |
| chr6_3 | exon | 80699699 | 80699801 | 80699699 | ID=Msa0960720-mRNA-1:exon:14493;Parent=Msa0960720-mRNA-1 |
| chr6_3 | exon | 80702955 | 80703027 | 80702955 | ID=Msa0960720-mRNA-1:exon:14494;Parent=Msa0960720-mRNA-1 |
| chr6_3 | exon | 80703106 | 80703207 | 80703106 | ID=Msa0960720-mRNA-1:exon:14495;Parent=Msa0960720-mRNA-1 |
| chr6_3 | exon | 80703291 | 80703357 | 80703291 | ID=Msa0960720-mRNA-1:exon:14496;Parent=Msa0960720-mRNA-1 |
| chr6_3 | CDS | 80698888 | 80698983 | 80698888 | ID=Msa0960720-mRNA-1:cds;Parent=Msa0960720-mRNA-1 |
| chr6_3 | CDS | 80699699 | 80699801 | 80699699 | ID=Msa0960720-mRNA-1:cds;Parent=Msa0960720-mRNA-1 |
| chr6_3 | CDS | 80702955 | 80703027 | 80702955 | ID=Msa0960720-mRNA-1:cds;Parent=Msa0960720-mRNA-1 |
| chr6_3 | CDS | 80703106 | 80703207 | 80703106 | ID=Msa0960720-mRNA-1:cds;Parent=Msa0960720-mRNA-1 |
| chr6_3 | CDS | 80703291 | 80703357 | 80703291 | ID=Msa0960720-mRNA-1:cds;Parent=Msa0960720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
