Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870830 | XP_003618437.1 | 94.788 | 518 | 27 | 0 | 1 | 518 | 1 | 518 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870830 | sp|Q9FLD5|ASD_ARATH | 62.609 | 460 | 162 | 5 | 5 | 457 | 4 | 460 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085280 | Msa0870830 | 0.805449 | 1.327969e-49 | -8.615850e-47 |
| Msa0085290 | Msa0870830 | 0.820566 | 6.408956e-53 | -8.615850e-47 |
| Msa0086590 | Msa0870830 | 0.806673 | 7.338527e-50 | -8.615850e-47 |
| Msa0092410 | Msa0870830 | 0.800606 | 1.332143e-48 | -8.615850e-47 |
| Msa0622170 | Msa0870830 | -0.837422 | 5.246054e-57 | -8.615850e-47 |
| Msa0647830 | Msa0870830 | 0.803728 | 3.034774e-49 | -8.615850e-47 |
| Msa0661650 | Msa0870830 | 0.803391 | 3.565878e-49 | -8.615850e-47 |
| Msa0662570 | Msa0870830 | 0.810373 | 1.190589e-50 | -8.615850e-47 |
| Msa0688070 | Msa0870830 | 0.803423 | 3.510694e-49 | -8.615850e-47 |
| Msa0690440 | Msa0870830 | 0.805498 | 1.297022e-49 | -8.615850e-47 |
| Msa0724210 | Msa0870830 | 0.814699 | 1.348836e-51 | -8.615850e-47 |
| Msa0790680 | Msa0870830 | 0.812900 | 3.358893e-51 | -8.615850e-47 |
| Msa0123300 | Msa0870830 | 0.801795 | 7.606400e-49 | -8.615850e-47 |
| Msa0206010 | Msa0870830 | 0.803157 | 3.985161e-49 | -8.615850e-47 |
| Msa0229590 | Msa0870830 | 0.818649 | 1.756038e-52 | -8.615850e-47 |
| Msa0393620 | Msa0870830 | 0.810248 | 1.266939e-50 | -8.615850e-47 |
| Msa0419910 | Msa0870830 | 0.804298 | 2.310586e-49 | -8.615850e-47 |
| Msa0428080 | Msa0870830 | 0.834785 | 2.451791e-56 | -8.615850e-47 |
| Msa0431060 | Msa0870830 | 0.800301 | 1.537006e-48 | -8.615850e-47 |
| Msa0464100 | Msa0870830 | 0.801871 | 7.339301e-49 | -8.615850e-47 |
| Msa0464120 | Msa0870830 | 0.809348 | 1.978166e-50 | -8.615850e-47 |
| Msa0476330 | Msa0870830 | 0.805106 | 1.566455e-49 | -8.615850e-47 |
| Msa0269560 | Msa0870830 | 0.800239 | 1.582127e-48 | -8.615850e-47 |
| Msa0269810 | Msa0870830 | 0.817773 | 2.771466e-52 | -8.615850e-47 |
| Msa0308460 | Msa0870830 | 0.811238 | 7.736366e-51 | -8.615850e-47 |
| Msa0321080 | Msa0870830 | 0.810244 | 1.269319e-50 | -8.615850e-47 |
| Msa0340450 | Msa0870830 | 0.808832 | 2.552089e-50 | -8.615850e-47 |
| Msa0357830 | Msa0870830 | 0.802701 | 4.951579e-49 | -8.615850e-47 |
| Msa0357840 | Msa0870830 | 0.804108 | 2.530693e-49 | -8.615850e-47 |
| Msa0490380 | Msa0870830 | 0.820734 | 5.865252e-53 | -8.615850e-47 |
| Msa0526070 | Msa0870830 | -0.849054 | 4.135742e-60 | -8.615850e-47 |
| Msa0553460 | Msa0870830 | 0.805715 | 1.167804e-49 | -8.615850e-47 |
| Msa0559160 | Msa0870830 | 0.815005 | 1.153692e-51 | -8.615850e-47 |
| Msa0580920 | Msa0870830 | 0.820997 | 5.101576e-53 | -8.615850e-47 |
| Msa0870060 | Msa0870830 | 0.809378 | 1.948923e-50 | -8.615850e-47 |
| Msa0870830 | Msa0870840 | 0.815508 | 8.918823e-52 | -8.615850e-47 |
| Msa0870830 | Msa0903370 | 0.803113 | 4.071085e-49 | -8.615850e-47 |
| Msa0870830 | Msa0903990 | 0.892389 | 1.661289e-74 | -8.615850e-47 |
| Msa0870830 | Msa0904000 | 0.844505 | 7.253250e-59 | -8.615850e-47 |
| Msa0870830 | Msa0904010 | 0.818100 | 2.338246e-52 | -8.615850e-47 |
| Msa0870830 | Msa0926890 | 0.812863 | 3.421909e-51 | -8.615850e-47 |
| Msa0870830 | Msa0927310 | 0.807394 | 5.165219e-50 | -8.615850e-47 |
| Msa0870830 | Msa0936530 | 0.919822 | 2.782367e-87 | -8.615850e-47 |
| Msa0870830 | Msa0936550 | 0.839955 | 1.162461e-57 | -8.615850e-47 |
| Msa0870830 | Msa0936560 | 0.842896 | 1.954204e-58 | -8.615850e-47 |
| Msa0870830 | Msa0965610 | 0.803662 | 3.132768e-49 | -8.615850e-47 |
| Msa0870830 | Msa0973520 | 0.941042 | 8.255689e-101 | -8.615850e-47 |
| Msa0870830 | Msa0973600 | 0.894275 | 2.874990e-75 | -8.615850e-47 |
| Msa0870830 | Msa1000230 | 0.802949 | 4.400030e-49 | -8.615850e-47 |
| Msa0870830 | Msa1000240 | 0.802816 | 4.687082e-49 | -8.615850e-47 |
| Msa0870830 | Msa1019000 | 0.812526 | 4.056014e-51 | -8.615850e-47 |
| Msa0870830 | Msa1039710 | -0.839567 | 1.466850e-57 | -8.615850e-47 |
| Msa0870830 | Msa1084120 | 0.825317 | 5.007934e-54 | -8.615850e-47 |
| Msa0870830 | Msa1177330 | 0.828433 | 9.016030e-55 | -8.615850e-47 |
| Msa0870830 | Msa1186950 | -0.810921 | 9.064739e-51 | -8.615850e-47 |
| Msa0870830 | Msa1198770 | 0.811964 | 5.379958e-51 | -8.615850e-47 |
| Msa0870830 | Msa1201200 | 0.845049 | 5.173223e-59 | -8.615850e-47 |
| Msa0870830 | Msa1207220 | 0.812825 | 3.488158e-51 | -8.615850e-47 |
| Msa0870830 | Msa1224480 | 0.800180 | 1.626635e-48 | -8.615850e-47 |
| Msa0870830 | Msa1225230 | 0.801320 | 9.518562e-49 | -8.615850e-47 |
| Msa0870830 | Msa1236730 | 0.833367 | 5.556298e-56 | -8.615850e-47 |
| Msa0870830 | Msa1243100 | 0.809043 | 2.299406e-50 | -8.615850e-47 |
| Msa0870830 | Msa1252260 | 0.824163 | 9.368685e-54 | -8.615850e-47 |
| Msa0870830 | Msa1255060 | 0.827344 | 1.647472e-54 | -8.615850e-47 |
| Msa0870830 | Msa1282580 | -0.814066 | 1.861769e-51 | -8.615850e-47 |
| Msa0870830 | Msa1295510 | 0.825357 | 4.898527e-54 | -8.615850e-47 |
| Msa0870830 | Msa1299560 | 0.805571 | 1.252021e-49 | -8.615850e-47 |
| Msa0870830 | Msa1299620 | 0.809822 | 1.564908e-50 | -8.615850e-47 |
| Msa0870830 | Msa1304890 | -0.855938 | 4.508604e-62 | -8.615850e-47 |
| Msa0870830 | Msa1317130 | 0.825893 | 3.656617e-54 | -8.615850e-47 |
| Msa0870830 | Msa1394380 | 0.803832 | 2.888453e-49 | -8.615850e-47 |
| Msa0870830 | Msa1398890 | 0.811988 | 5.315413e-51 | -8.615850e-47 |
| Msa0870830 | Msa1408180 | 0.830552 | 2.753352e-55 | -8.615850e-47 |
| Msa0870830 | Msa1424750 | 0.822003 | 2.988517e-53 | -8.615850e-47 |
| Msa0870830 | Msa1430550 | 0.821965 | 3.049499e-53 | -8.615850e-47 |
| Msa0870830 | Msa1448980 | 0.826670 | 2.387712e-54 | -8.615850e-47 |
| Msa0870830 | Msa1453320 | 0.813608 | 2.348060e-51 | -8.615850e-47 |
| Msa0870830 | Msa1457040 | 0.823515 | 1.328584e-53 | -8.615850e-47 |
| Msa0870830 | Msa1458510 | 0.820274 | 7.479115e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870830 | MtrunA17_Chr6g0452371 | 94.788 | 518 | 27 | 0 | 1 | 518 | 1 | 518 | 0.0 | 942 |
| Msa0870830 | MtrunA17_Chr6g0452391 | 86.822 | 516 | 68 | 0 | 3 | 518 | 1 | 516 | 0.0 | 855 |
| Msa0870830 | MtrunA17_Chr6g0452451 | 73.123 | 506 | 116 | 5 | 1 | 493 | 1 | 499 | 0.0 | 709 |
| Msa0870830 | MtrunA17_Chr6g0452401 | 75.442 | 452 | 92 | 3 | 25 | 461 | 1 | 448 | 0.0 | 687 |
| Msa0870830 | MtrunA17_Chr7g0215951 | 67.387 | 463 | 142 | 4 | 5 | 461 | 1 | 460 | 0.0 | 644 |
| Msa0870830 | MtrunA17_Chr6g0466811 | 70.362 | 469 | 118 | 4 | 12 | 479 | 21 | 469 | 0.0 | 643 |
| Msa0870830 | MtrunA17_Chr4g0059811 | 60.125 | 479 | 173 | 7 | 7 | 473 | 8 | 480 | 0.0 | 587 |
| Msa0870830 | MtrunA17_Chr1g0155131 | 58.996 | 478 | 179 | 5 | 3 | 477 | 1 | 464 | 0.0 | 575 |
| Msa0870830 | MtrunA17_Chr6g0452411 | 74.378 | 402 | 84 | 4 | 105 | 493 | 1 | 396 | 0.0 | 565 |
| Msa0870830 | MtrunA17_Chr2g0292561 | 57.872 | 470 | 181 | 5 | 7 | 472 | 8 | 464 | 0.0 | 555 |
| Msa0870830 | MtrunA17_Chr1g0155121 | 52.155 | 464 | 206 | 5 | 7 | 460 | 3 | 460 | 1.84e-171 | 493 |
| Msa0870830 | MtrunA17_Chr6g0452361 | 81.271 | 299 | 30 | 2 | 215 | 513 | 1 | 273 | 3.23e-151 | 433 |
| Msa0870830 | MtrunA17_Chr6g0452481 | 70.440 | 318 | 76 | 4 | 194 | 510 | 2 | 302 | 7.02e-142 | 411 |
| Msa0870830 | MtrunA17_Chr4g0072491 | 44.695 | 443 | 233 | 5 | 7 | 441 | 3 | 441 | 3.64e-127 | 381 |
| Msa0870830 | MtrunA17_Chr5g0404651 | 38.614 | 505 | 268 | 8 | 8 | 500 | 13 | 487 | 8.33e-118 | 356 |
| Msa0870830 | MtrunA17_Chr2g0315921 | 40.638 | 470 | 228 | 12 | 14 | 469 | 14 | 446 | 4.28e-110 | 335 |
| Msa0870830 | MtrunA17_Chr2g0308991 | 37.525 | 493 | 279 | 11 | 5 | 491 | 4 | 473 | 1.07e-107 | 331 |
| Msa0870830 | MtrunA17_Chr2g0315991 | 39.235 | 497 | 247 | 12 | 12 | 499 | 13 | 463 | 1.83e-107 | 329 |
| Msa0870830 | MtrunA17_Chr8g0372701 | 38.285 | 478 | 264 | 9 | 8 | 481 | 23 | 473 | 1.43e-106 | 327 |
| Msa0870830 | MtrunA17_Chr2g0315911 | 40.041 | 482 | 235 | 13 | 14 | 482 | 16 | 456 | 2.67e-106 | 325 |
| Msa0870830 | MtrunA17_Chr2g0315971 | 40.821 | 463 | 234 | 9 | 12 | 469 | 7 | 434 | 4.67e-105 | 330 |
| Msa0870830 | MtrunA17_Chr2g0315971 | 48.944 | 284 | 113 | 6 | 180 | 461 | 450 | 703 | 1.76e-83 | 274 |
| Msa0870830 | MtrunA17_Chr2g0315981 | 38.958 | 480 | 258 | 9 | 12 | 485 | 7 | 457 | 8.99e-104 | 319 |
| Msa0870830 | MtrunA17_Chr2g0316041 | 42.092 | 411 | 202 | 9 | 65 | 469 | 1 | 381 | 1.18e-101 | 313 |
| Msa0870830 | MtrunA17_Chr5g0404661 | 37.397 | 484 | 268 | 12 | 3 | 472 | 19 | 481 | 6.27e-95 | 297 |
| Msa0870830 | MtrunA17_Chr2g0316021 | 36.437 | 494 | 235 | 11 | 12 | 501 | 7 | 425 | 7.88e-92 | 287 |
| Msa0870830 | MtrunA17_Chr3g0134831 | 45.033 | 302 | 148 | 5 | 162 | 462 | 4 | 288 | 2.16e-84 | 263 |
| Msa0870830 | MtrunA17_Chr3g0127381 | 30.342 | 468 | 257 | 12 | 8 | 461 | 2 | 414 | 7.44e-66 | 221 |
| Msa0870830 | MtrunA17_Chr7g0276031 | 33.251 | 403 | 204 | 11 | 63 | 455 | 59 | 406 | 9.02e-65 | 218 |
| Msa0870830 | MtrunA17_Chr8g0346371 | 29.607 | 483 | 288 | 12 | 40 | 516 | 35 | 471 | 3.26e-63 | 214 |
| Msa0870830 | MtrunA17_Chr6g0452351 | 58.678 | 121 | 49 | 1 | 11 | 130 | 20 | 140 | 5.19e-44 | 152 |
| Msa0870830 | MtrunA17_Chr1g0148871 | 61.481 | 135 | 47 | 3 | 328 | 460 | 2 | 133 | 1.35e-42 | 150 |
| Msa0870830 | MtrunA17_Chr5g0404671 | 52.294 | 109 | 48 | 2 | 355 | 462 | 1 | 106 | 8.26e-31 | 117 |
| Msa0870830 | MtrunA17_Chr5g0404681 | 41.935 | 124 | 62 | 1 | 146 | 269 | 39 | 152 | 1.36e-29 | 114 |
| Msa0870830 | MtrunA17_Chr5g0404691 | 37.714 | 175 | 82 | 4 | 289 | 462 | 2 | 150 | 1.76e-23 | 97.1 |
| Msa0870830 | MtrunA17_Chr1g0211521 | 50.467 | 107 | 48 | 2 | 388 | 490 | 5 | 110 | 5.69e-22 | 91.3 |
| Msa0870830 | MtrunA17_Chr1g0192151 | 32.105 | 190 | 96 | 6 | 221 | 401 | 180 | 345 | 1.37e-13 | 72.8 |
| Msa0870830 | MtrunA17_Chr4g0014731 | 32.105 | 190 | 96 | 6 | 221 | 401 | 181 | 346 | 1.71e-13 | 72.4 |
| Msa0870830 | MtrunA17_Chr6g0476861 | 27.302 | 315 | 183 | 14 | 188 | 480 | 177 | 467 | 1.43e-12 | 70.5 |
| Msa0870830 | MtrunA17_Chr8g0362771 | 28.774 | 212 | 117 | 7 | 189 | 392 | 218 | 403 | 1.89e-12 | 70.1 |
| Msa0870830 | MtrunA17_Chr4g0031821 | 27.727 | 220 | 115 | 8 | 210 | 421 | 322 | 505 | 5.12e-12 | 68.6 |
| Msa0870830 | MtrunA17_Chr7g0248361 | 26.280 | 293 | 170 | 11 | 210 | 480 | 194 | 462 | 1.99e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870830 | AT5G40010.1 | 62.609 | 460 | 162 | 5 | 5 | 457 | 4 | 460 | 0.0 | 590 |
| Msa0870830 | AT3G28580.1 | 60.954 | 461 | 163 | 8 | 5 | 457 | 4 | 455 | 0.0 | 551 |
| Msa0870830 | AT3G28510.1 | 59.219 | 461 | 186 | 2 | 6 | 466 | 5 | 463 | 0.0 | 534 |
| Msa0870830 | AT3G28580.2 | 57.642 | 458 | 161 | 7 | 5 | 457 | 4 | 433 | 2.30e-176 | 505 |
| Msa0870830 | AT3G28540.2 | 57.298 | 459 | 183 | 6 | 6 | 459 | 5 | 455 | 2.29e-172 | 496 |
| Msa0870830 | AT3G28540.1 | 57.298 | 459 | 183 | 6 | 6 | 459 | 5 | 455 | 2.40e-172 | 496 |
| Msa0870830 | AT3G28610.1 | 51.143 | 481 | 176 | 10 | 10 | 465 | 4 | 450 | 1.03e-165 | 478 |
| Msa0870830 | AT3G28600.1 | 51.148 | 479 | 191 | 8 | 1 | 465 | 1 | 450 | 4.57e-163 | 471 |
| Msa0870830 | AT5G40000.1 | 48.566 | 488 | 208 | 9 | 3 | 474 | 2 | 462 | 5.36e-156 | 453 |
| Msa0870830 | AT3G28520.1 | 55.902 | 449 | 184 | 6 | 17 | 460 | 2 | 441 | 4.93e-154 | 449 |
| Msa0870830 | AT3G28600.2 | 48.225 | 479 | 166 | 8 | 1 | 465 | 1 | 411 | 8.56e-145 | 424 |
| Msa0870830 | AT3G28570.1 | 47.009 | 468 | 197 | 8 | 10 | 464 | 7 | 436 | 8.03e-144 | 421 |
| Msa0870830 | AT3G28570.2 | 47.009 | 468 | 197 | 8 | 10 | 464 | 14 | 443 | 1.32e-143 | 421 |
| Msa0870830 | AT5G57480.1 | 40.756 | 476 | 266 | 6 | 7 | 472 | 3 | 472 | 2.63e-126 | 379 |
| Msa0870830 | AT4G25835.1 | 41.053 | 475 | 267 | 7 | 7 | 477 | 3 | 468 | 7.02e-125 | 375 |
| Msa0870830 | AT4G30250.2 | 40.126 | 476 | 263 | 8 | 3 | 466 | 1 | 466 | 1.38e-114 | 349 |
| Msa0870830 | AT4G30250.1 | 40.084 | 474 | 262 | 8 | 5 | 466 | 1 | 464 | 3.65e-114 | 348 |
| Msa0870830 | AT3G50940.1 | 39.644 | 449 | 226 | 9 | 28 | 471 | 43 | 451 | 5.86e-109 | 332 |
| Msa0870830 | AT3G50930.1 | 38.645 | 502 | 266 | 12 | 20 | 511 | 73 | 542 | 3.22e-108 | 335 |
| Msa0870830 | AT2G18193.1 | 39.212 | 482 | 258 | 9 | 13 | 491 | 19 | 468 | 2.95e-106 | 327 |
| Msa0870830 | AT5G17740.1 | 36.647 | 513 | 277 | 12 | 6 | 495 | 11 | 498 | 7.06e-103 | 319 |
| Msa0870830 | AT4G05380.1 | 38.854 | 471 | 255 | 10 | 4 | 468 | 11 | 454 | 5.01e-102 | 315 |
| Msa0870830 | AT5G17730.1 | 36.382 | 492 | 266 | 12 | 5 | 482 | 10 | 468 | 1.06e-101 | 314 |
| Msa0870830 | AT5G17760.1 | 40.000 | 445 | 213 | 9 | 68 | 487 | 72 | 487 | 7.69e-101 | 313 |
| Msa0870830 | AT2G18190.1 | 38.261 | 460 | 253 | 9 | 8 | 464 | 15 | 446 | 3.37e-99 | 308 |
| Msa0870830 | AT1G43910.1 | 38.478 | 473 | 261 | 10 | 4 | 471 | 10 | 457 | 7.71e-97 | 302 |
| Msa0870830 | AT5G17750.1 | 33.643 | 431 | 225 | 8 | 6 | 426 | 11 | 390 | 1.11e-82 | 263 |
| Msa0870830 | AT2G46620.1 | 30.081 | 492 | 293 | 8 | 5 | 491 | 1 | 446 | 7.30e-71 | 234 |
| Msa0870830 | AT5G17760.2 | 36.940 | 268 | 143 | 4 | 68 | 320 | 72 | 328 | 1.04e-51 | 180 |
| Msa0870830 | AT3G28560.1 | 42.661 | 218 | 115 | 4 | 6 | 221 | 5 | 214 | 3.44e-48 | 167 |
| Msa0870830 | AT3G29800.1 | 31.105 | 344 | 185 | 8 | 143 | 481 | 104 | 400 | 1.50e-45 | 166 |
| Msa0870830 | AT4G05340.1 | 51.042 | 96 | 41 | 1 | 317 | 412 | 4 | 93 | 2.07e-23 | 95.1 |
| Msa0870830 | AT1G09100.1 | 32.632 | 190 | 95 | 6 | 221 | 401 | 180 | 345 | 3.32e-14 | 75.1 |
| Msa0870830 | AT3G05530.1 | 32.105 | 190 | 96 | 6 | 221 | 401 | 181 | 346 | 1.38e-13 | 73.2 |
| Msa0870830 | AT3G02450.1 | 25.325 | 308 | 178 | 11 | 224 | 519 | 346 | 613 | 8.59e-12 | 68.2 |
Find 71 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTAAGGTAACTCTTTC+TGG | 0.086559 | 6_1:-5445460 | Msa0870830:CDS |
| AAACGTGGTTATCTACTTTA+TGG | 0.185533 | 6_1:-5445754 | Msa0870830:CDS |
| TTTGAGCATCCTGCAAGATT+TGG | 0.271233 | 6_1:-5445877 | Msa0870830:CDS |
| CGAAGTATGAAGATGGGAAT+TGG | 0.306596 | 6_1:-5446492 | None:intergenic |
| CAAATAACCCTAGTAGTAAT+TGG | 0.316335 | 6_1:-5445936 | Msa0870830:CDS |
| ATAAAGTTTCATGAATTATC+AGG | 0.317330 | 6_1:-5446324 | Msa0870830:CDS |
| AGAAAATATCTACGAAGATT+AGG | 0.335237 | 6_1:+5446393 | None:intergenic |
| GAAGTATGAAGATGGGAATT+GGG | 0.351714 | 6_1:-5446491 | None:intergenic |
| GCTAGGTTTCCAAATCTTGC+AGG | 0.369566 | 6_1:+5445868 | None:intergenic |
| TCCAATTATTGAAAAGTTGT+TGG | 0.390561 | 6_1:-5445230 | Msa0870830:CDS |
| AAAGGTTAAGATTGATGAAA+AGG | 0.396669 | 6_1:-5444999 | Msa0870830:CDS |
| CCAATTATTGAAAAGTTGTT+GGG | 0.400795 | 6_1:-5445229 | Msa0870830:CDS |
| AGTTCAATGGAGTCAAAGTT+TGG | 0.406209 | 6_1:-5446146 | Msa0870830:CDS |
| AGAAGAGAAGAATGAAAGTA+AGG | 0.407800 | 6_1:-5445473 | Msa0870830:CDS |
| CTTTATGGTCCTCCAGGAAC+TGG | 0.407812 | 6_1:-5445739 | Msa0870830:CDS |
| TGAAACTTTATGTGGATGTA+TGG | 0.409252 | 6_1:+5446336 | None:intergenic |
| GGTTCTTGCAAGAAACTACT+TGG | 0.415265 | 6_1:-5445278 | Msa0870830:CDS |
| AAATCTTCAGTGATTGACTT+TGG | 0.418717 | 6_1:+5445163 | None:intergenic |
| CAACACATGTTGAATGTAAG+AGG | 0.425064 | 6_1:+5446008 | None:intergenic |
| CTCTTACATTCAACATGTGT+TGG | 0.428090 | 6_1:-5446007 | Msa0870830:CDS |
| AAAGAGTATTATGCTAAAGT+TGG | 0.429304 | 6_1:-5445787 | Msa0870830:CDS |
| AACATTTCGAAGTATGAAGA+TGG | 0.445929 | 6_1:-5446499 | None:intergenic |
| TCTTGAGTTAACAACTGTTA+AGG | 0.446059 | 6_1:-5445662 | Msa0870830:CDS |
| AGTTTGCACTAAGATATGTT+TGG | 0.446804 | 6_1:+5446265 | None:intergenic |
| ATTCAACATGTGTTGGATGA+AGG | 0.454671 | 6_1:-5446000 | Msa0870830:CDS |
| GATCTTCTTAAGTTCAAGAA+AGG | 0.458025 | 6_1:-5445811 | Msa0870830:CDS |
| AGATGGGAATTGGGGAACTA+TGG | 0.460698 | 6_1:-5446482 | Msa0870830:CDS |
| AACTTGATCCTGCTCTCATA+AGG | 0.476557 | 6_1:-5445357 | Msa0870830:CDS |
| ATGCTAAAGTTGGAAAAGCT+TGG | 0.482796 | 6_1:-5445777 | Msa0870830:CDS |
| ATTGACTCAAGGGGAAGAAA+AGG | 0.487611 | 6_1:-5445017 | Msa0870830:CDS |
| CTTCCCCTCCTTATGAGAGC+AGG | 0.493116 | 6_1:+5445349 | None:intergenic |
| AAGCTATTATGAGCAAGAAT+AGG | 0.495148 | 6_1:-5445975 | Msa0870830:CDS |
| TGATGAAAAGGTTGATGAAA+AGG | 0.501078 | 6_1:-5444987 | Msa0870830:CDS |
| CTCTCGATCTCACCGGGCAA+AGG | 0.502496 | 6_1:-5445564 | Msa0870830:CDS |
| TATCTACTTTATGGTCCTCC+AGG | 0.505261 | 6_1:-5445745 | Msa0870830:CDS |
| GACTTTGATTCAATCTCTTG+AGG | 0.516280 | 6_1:-5445125 | Msa0870830:CDS |
| GATTGTTCTCTCGATCTCAC+CGG | 0.518830 | 6_1:-5445571 | Msa0870830:CDS |
| ATAATTCATGAAACTTTATG+TGG | 0.520872 | 6_1:+5446328 | None:intergenic |
| AAATTCTCAGCAACATCAGC+AGG | 0.526229 | 6_1:+5445190 | None:intergenic |
| GAAATCATAGATGAGTTCAA+TGG | 0.530945 | 6_1:-5446159 | Msa0870830:CDS |
| GAGAATGGTGTCAAAGAGAA+TGG | 0.531190 | 6_1:-5444959 | Msa0870830:CDS |
| TCTCATAAGGAGGGGAAGAA+TGG | 0.535990 | 6_1:-5445344 | Msa0870830:CDS |
| GAGAAAGAAGAATTGACTCA+AGG | 0.537664 | 6_1:-5445028 | Msa0870830:CDS |
| AGAAAGAAGAATTGACTCAA+GGG | 0.539847 | 6_1:-5445027 | Msa0870830:CDS |
| ATTGTTCTCTCGATCTCACC+GGG | 0.546404 | 6_1:-5445570 | Msa0870830:CDS |
| TAACCCTAGTAGTAATTGGT+GGG | 0.547641 | 6_1:-5445932 | Msa0870830:CDS |
| AAATATCTACGAAGATTAGG+TGG | 0.547924 | 6_1:+5446396 | None:intergenic |
| AAAACCACTTGTTCTTAGCA+TGG | 0.557204 | 6_1:-5446193 | Msa0870830:CDS |
| GATGAAAAGGTGAAGGAGAA+TGG | 0.562937 | 6_1:-5444974 | Msa0870830:CDS |
| GTTGGAAAAGCTTGGAAACG+TGG | 0.566291 | 6_1:-5445769 | Msa0870830:CDS |
| TGATGAGAATGATGAAAAGA+AGG | 0.571153 | 6_1:-5445518 | Msa0870830:CDS |
| AACCCTAGTAGTAATTGGTG+GGG | 0.572012 | 6_1:-5445931 | Msa0870830:CDS |
| TCATCCATGCTAAGAACAAG+TGG | 0.573558 | 6_1:+5446189 | None:intergenic |
| GAAAGAAGAATTGACTCAAG+GGG | 0.574478 | 6_1:-5445026 | Msa0870830:CDS |
| TTGATCCTGCTCTCATAAGG+AGG | 0.589263 | 6_1:-5445354 | Msa0870830:CDS |
| TGATCCTGCTCTCATAAGGA+GGG | 0.594215 | 6_1:-5445353 | Msa0870830:CDS |
| TCAATGGAGTCAAAGTTTGG+TGG | 0.596166 | 6_1:-5446143 | Msa0870830:CDS |
| ACATTTCGAAGTATGAAGAT+GGG | 0.596615 | 6_1:-5446498 | None:intergenic |
| AAGATTTGGAAACCTAGCTA+TGG | 0.607202 | 6_1:-5445863 | Msa0870830:CDS |
| AAAGGTTGATGAAAAGGTGA+AGG | 0.612970 | 6_1:-5444981 | Msa0870830:CDS |
| GGATGAGGAAGCAAAGCTCA+AGG | 0.616773 | 6_1:-5445059 | Msa0870830:CDS |
| GAGAATGGTGTGAAAGAGAA+CGG | 0.617159 | 6_1:-5444944 | Msa0870830:CDS |
| ACCCTAGTAGTAATTGGTGG+GGG | 0.617964 | 6_1:-5445930 | Msa0870830:CDS |
| GGGGAACTATGGTCACAACT+AGG | 0.620126 | 6_1:-5446471 | Msa0870830:CDS |
| ATAACCCTAGTAGTAATTGG+TGG | 0.620183 | 6_1:-5445933 | Msa0870830:CDS |
| GATGGGATTTGGTCAGCATG+TGG | 0.620826 | 6_1:-5445421 | Msa0870830:CDS |
| AAGTATGAAGATGGGAATTG+GGG | 0.621828 | 6_1:-5446490 | None:intergenic |
| GGTCAGCATGTGGATCAGAA+AGG | 0.624596 | 6_1:-5445411 | Msa0870830:CDS |
| AATATCTACGAAGATTAGGT+GGG | 0.627753 | 6_1:+5446397 | None:intergenic |
| GATCCTGCTCTCATAAGGAG+GGG | 0.632718 | 6_1:-5445352 | Msa0870830:CDS |
| GTCACAACTAGGTTCAATCA+CGG | 0.654145 | 6_1:-5446460 | Msa0870830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCATGAAACTTTATG+TGG | + | chr6_1:5445092-5445111 | None:intergenic | 20.0% |
| !! | ATAAAGTTTCATGAATTATC+AGG | - | chr6_1:5445093-5445112 | Msa0870830:CDS | 20.0% |
| !!! | GTTTGTTGAATTTTATTGAT+GGG | - | chr6_1:5445979-5445998 | Msa0870830:CDS | 20.0% |
| !!! | AATTTTCACAACAAATTTTG+TGG | - | chr6_1:5446034-5446053 | Msa0870830:CDS | 20.0% |
| !! | ATAATTCATGAAACTTTATG+TGG | + | chr6_1:5445092-5445111 | None:intergenic | 20.0% |
| !! | ATAAAGTTTCATGAATTATC+AGG | - | chr6_1:5445093-5445112 | Msa0870830:CDS | 20.0% |
| !!! | GTTTGTTGAATTTTATTGAT+GGG | - | chr6_1:5445979-5445998 | Msa0870830:CDS | 20.0% |
| !!! | AATTTTCACAACAAATTTTG+TGG | - | chr6_1:5446034-5446053 | Msa0870830:CDS | 20.0% |
| ! | AGAAAATATCTACGAAGATT+AGG | + | chr6_1:5445027-5445046 | None:intergenic | 25.0% |
| !! | AGAAAATGATTGTGATTTTG+AGG | + | chr6_1:5445316-5445335 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTCATCTGAAGT+AGG | + | chr6_1:5445345-5445364 | None:intergenic | 25.0% |
| !!! | AAAATCTCTTGTTTCTTTTC+TGG | + | chr6_1:5445582-5445601 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | - | chr6_1:5445630-5445649 | Msa0870830:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | + | chr6_1:5445927-5445946 | None:intergenic | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | - | chr6_1:5445978-5445997 | Msa0870830:CDS | 25.0% |
| !! | TGAATTTTATTGATGGGATT+TGG | - | chr6_1:5445985-5446004 | Msa0870830:CDS | 25.0% |
| ! | TCCAATTATTGAAAAGTTGT+TGG | - | chr6_1:5446187-5446206 | Msa0870830:CDS | 25.0% |
| ! | CCAATTATTGAAAAGTTGTT+GGG | - | chr6_1:5446188-5446207 | Msa0870830:CDS | 25.0% |
| ! | TCTTGAGGAAAAAAAGAAAA+AGG | - | chr6_1:5446307-5446326 | Msa0870830:CDS | 25.0% |
| ! | AAAGGTTAAGATTGATGAAA+AGG | - | chr6_1:5446418-5446437 | Msa0870830:CDS | 25.0% |
| ! | AGAAAATATCTACGAAGATT+AGG | + | chr6_1:5445027-5445046 | None:intergenic | 25.0% |
| !! | AGAAAATGATTGTGATTTTG+AGG | + | chr6_1:5445316-5445335 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTCATCTGAAGT+AGG | + | chr6_1:5445345-5445364 | None:intergenic | 25.0% |
| !!! | AAAATCTCTTGTTTCTTTTC+TGG | + | chr6_1:5445582-5445601 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | - | chr6_1:5445630-5445649 | Msa0870830:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | + | chr6_1:5445927-5445946 | None:intergenic | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | - | chr6_1:5445978-5445997 | Msa0870830:CDS | 25.0% |
| !! | TGAATTTTATTGATGGGATT+TGG | - | chr6_1:5445985-5446004 | Msa0870830:CDS | 25.0% |
| ! | TCCAATTATTGAAAAGTTGT+TGG | - | chr6_1:5446187-5446206 | Msa0870830:CDS | 25.0% |
| ! | CCAATTATTGAAAAGTTGTT+GGG | - | chr6_1:5446188-5446207 | Msa0870830:CDS | 25.0% |
| ! | TCTTGAGGAAAAAAAGAAAA+AGG | - | chr6_1:5446307-5446326 | Msa0870830:CDS | 25.0% |
| ! | AAAGGTTAAGATTGATGAAA+AGG | - | chr6_1:5446418-5446437 | Msa0870830:CDS | 25.0% |
| TGGGAAAAATTTGTCAAACA+TGG | + | chr6_1:5445004-5445023 | None:intergenic | 30.0% | |
| AATATCTACGAAGATTAGGT+GGG | + | chr6_1:5445023-5445042 | None:intergenic | 30.0% | |
| AAATATCTACGAAGATTAGG+TGG | + | chr6_1:5445024-5445043 | None:intergenic | 30.0% | |
| TGAAACTTTATGTGGATGTA+TGG | + | chr6_1:5445084-5445103 | None:intergenic | 30.0% | |
| AGTTTGCACTAAGATATGTT+TGG | + | chr6_1:5445155-5445174 | None:intergenic | 30.0% | |
| GAAATCATAGATGAGTTCAA+TGG | - | chr6_1:5445258-5445277 | Msa0870830:CDS | 30.0% | |
| !! | AAATGATTGTGATTTTGAGG+TGG | + | chr6_1:5445313-5445332 | None:intergenic | 30.0% |
| !! | ATGCTTTTTATGGAAGGTTA+GGG | + | chr6_1:5445373-5445392 | None:intergenic | 30.0% |
| AAGCTATTATGAGCAAGAAT+AGG | - | chr6_1:5445442-5445461 | Msa0870830:CDS | 30.0% | |
| CAAATAACCCTAGTAGTAAT+TGG | - | chr6_1:5445481-5445500 | Msa0870830:CDS | 30.0% | |
| GATCTTCTTAAGTTCAAGAA+AGG | - | chr6_1:5445606-5445625 | Msa0870830:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | - | chr6_1:5445663-5445682 | Msa0870830:CDS | 30.0% | |
| TCTTGAGTTAACAACTGTTA+AGG | - | chr6_1:5445755-5445774 | Msa0870830:CDS | 30.0% | |
| TGATGAGAATGATGAAAAGA+AGG | - | chr6_1:5445899-5445918 | Msa0870830:CDS | 30.0% | |
| AGAAGAGAAGAATGAAAGTA+AGG | - | chr6_1:5445944-5445963 | Msa0870830:CDS | 30.0% | |
| ! | TTGTAGCTATCAAGCTTTTA+AGG | - | chr6_1:5446118-5446137 | Msa0870830:CDS | 30.0% |
| ! | CCCAACAACTTTTCAATAAT+TGG | + | chr6_1:5446191-5446210 | None:intergenic | 30.0% |
| ! | AAATCTTCAGTGATTGACTT+TGG | + | chr6_1:5446257-5446276 | None:intergenic | 30.0% |
| GGAAAAAAAGAAAAAGGATG+AGG | - | chr6_1:5446313-5446332 | Msa0870830:CDS | 30.0% | |
| AAAAAAGAAAAAGGATGAGG+AGG | - | chr6_1:5446316-5446335 | Msa0870830:CDS | 30.0% | |
| AAAGAAAAAGATAGAGGATG+AGG | - | chr6_1:5446343-5446362 | Msa0870830:CDS | 30.0% | |
| ! | AGAAAGAAGAATTGACTCAA+GGG | - | chr6_1:5446390-5446409 | Msa0870830:CDS | 30.0% |
| !! | TGATGAAAAGGTTGATGAAA+AGG | - | chr6_1:5446430-5446449 | Msa0870830:CDS | 30.0% |
| TGGGAAAAATTTGTCAAACA+TGG | + | chr6_1:5445004-5445023 | None:intergenic | 30.0% | |
| AATATCTACGAAGATTAGGT+GGG | + | chr6_1:5445023-5445042 | None:intergenic | 30.0% | |
| AAATATCTACGAAGATTAGG+TGG | + | chr6_1:5445024-5445043 | None:intergenic | 30.0% | |
| TGAAACTTTATGTGGATGTA+TGG | + | chr6_1:5445084-5445103 | None:intergenic | 30.0% | |
| AGTTTGCACTAAGATATGTT+TGG | + | chr6_1:5445155-5445174 | None:intergenic | 30.0% | |
| GAAATCATAGATGAGTTCAA+TGG | - | chr6_1:5445258-5445277 | Msa0870830:CDS | 30.0% | |
| !! | AAATGATTGTGATTTTGAGG+TGG | + | chr6_1:5445313-5445332 | None:intergenic | 30.0% |
| !! | ATGCTTTTTATGGAAGGTTA+GGG | + | chr6_1:5445373-5445392 | None:intergenic | 30.0% |
| AAGCTATTATGAGCAAGAAT+AGG | - | chr6_1:5445442-5445461 | Msa0870830:CDS | 30.0% | |
| CAAATAACCCTAGTAGTAAT+TGG | - | chr6_1:5445481-5445500 | Msa0870830:CDS | 30.0% | |
| GATCTTCTTAAGTTCAAGAA+AGG | - | chr6_1:5445606-5445625 | Msa0870830:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | - | chr6_1:5445663-5445682 | Msa0870830:CDS | 30.0% | |
| TCTTGAGTTAACAACTGTTA+AGG | - | chr6_1:5445755-5445774 | Msa0870830:CDS | 30.0% | |
| TGATGAGAATGATGAAAAGA+AGG | - | chr6_1:5445899-5445918 | Msa0870830:CDS | 30.0% | |
| AGAAGAGAAGAATGAAAGTA+AGG | - | chr6_1:5445944-5445963 | Msa0870830:CDS | 30.0% | |
| ! | TTGTAGCTATCAAGCTTTTA+AGG | - | chr6_1:5446118-5446137 | Msa0870830:CDS | 30.0% |
| ! | CCCAACAACTTTTCAATAAT+TGG | + | chr6_1:5446191-5446210 | None:intergenic | 30.0% |
| ! | AAATCTTCAGTGATTGACTT+TGG | + | chr6_1:5446257-5446276 | None:intergenic | 30.0% |
| GGAAAAAAAGAAAAAGGATG+AGG | - | chr6_1:5446313-5446332 | Msa0870830:CDS | 30.0% | |
| AAAAAAGAAAAAGGATGAGG+AGG | - | chr6_1:5446316-5446335 | Msa0870830:CDS | 30.0% | |
| AAAGAAAAAGATAGAGGATG+AGG | - | chr6_1:5446343-5446362 | Msa0870830:CDS | 30.0% | |
| ! | AGAAAGAAGAATTGACTCAA+GGG | - | chr6_1:5446390-5446409 | Msa0870830:CDS | 30.0% |
| !! | TGATGAAAAGGTTGATGAAA+AGG | - | chr6_1:5446430-5446449 | Msa0870830:CDS | 30.0% |
| ! | TGCTAAGAACAAGTGGTTTT+TGG | + | chr6_1:5445224-5445243 | None:intergenic | 35.0% |
| AAAACCACTTGTTCTTAGCA+TGG | - | chr6_1:5445224-5445243 | Msa0870830:CDS | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | chr6_1:5445271-5445290 | Msa0870830:CDS | 35.0% | |
| !! | GATGCTTTTTATGGAAGGTT+AGG | + | chr6_1:5445374-5445393 | None:intergenic | 35.0% |
| !! | TTCACGATGCTTTTTATGGA+AGG | + | chr6_1:5445379-5445398 | None:intergenic | 35.0% |
| !! | TGAGTTCACGATGCTTTTTA+TGG | + | chr6_1:5445383-5445402 | None:intergenic | 35.0% |
| CAACACATGTTGAATGTAAG+AGG | + | chr6_1:5445412-5445431 | None:intergenic | 35.0% | |
| CTCTTACATTCAACATGTGT+TGG | - | chr6_1:5445410-5445429 | Msa0870830:CDS | 35.0% | |
| ATTCAACATGTGTTGGATGA+AGG | - | chr6_1:5445417-5445436 | Msa0870830:CDS | 35.0% | |
| ATAACCCTAGTAGTAATTGG+TGG | - | chr6_1:5445484-5445503 | Msa0870830:CDS | 35.0% | |
| TAACCCTAGTAGTAATTGGT+GGG | - | chr6_1:5445485-5445504 | Msa0870830:CDS | 35.0% | |
| AAGATTTGGAAACCTAGCTA+TGG | - | chr6_1:5445554-5445573 | Msa0870830:CDS | 35.0% | |
| ATGCTAAAGTTGGAAAAGCT+TGG | - | chr6_1:5445640-5445659 | Msa0870830:CDS | 35.0% | |
| ! | ATTGTAGATTTTCCAGTTCC+TGG | + | chr6_1:5445693-5445712 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTCTTCCTTTGCC+CGG | + | chr6_1:5445868-5445887 | None:intergenic | 35.0% |
| GAAAGTAAGGTAACTCTTTC+TGG | - | chr6_1:5445957-5445976 | Msa0870830:CDS | 35.0% | |
| GACTTTGATTCAATCTCTTG+AGG | - | chr6_1:5446292-5446311 | Msa0870830:CDS | 35.0% | |
| GGAAGCAAAGAAAAAGATAG+AGG | - | chr6_1:5446337-5446356 | Msa0870830:CDS | 35.0% | |
| ! | GAGAAAGAAGAATTGACTCA+AGG | - | chr6_1:5446389-5446408 | Msa0870830:CDS | 35.0% |
| ! | GAAAGAAGAATTGACTCAAG+GGG | - | chr6_1:5446391-5446410 | Msa0870830:CDS | 35.0% |
| !! | AAAGGTTGATGAAAAGGTGA+AGG | - | chr6_1:5446436-5446455 | Msa0870830:CDS | 35.0% |
| ! | TGCTAAGAACAAGTGGTTTT+TGG | + | chr6_1:5445224-5445243 | None:intergenic | 35.0% |
| AAAACCACTTGTTCTTAGCA+TGG | - | chr6_1:5445224-5445243 | Msa0870830:CDS | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | chr6_1:5445271-5445290 | Msa0870830:CDS | 35.0% | |
| !! | GATGCTTTTTATGGAAGGTT+AGG | + | chr6_1:5445374-5445393 | None:intergenic | 35.0% |
| !! | TTCACGATGCTTTTTATGGA+AGG | + | chr6_1:5445379-5445398 | None:intergenic | 35.0% |
| !! | TGAGTTCACGATGCTTTTTA+TGG | + | chr6_1:5445383-5445402 | None:intergenic | 35.0% |
| CAACACATGTTGAATGTAAG+AGG | + | chr6_1:5445412-5445431 | None:intergenic | 35.0% | |
| CTCTTACATTCAACATGTGT+TGG | - | chr6_1:5445410-5445429 | Msa0870830:CDS | 35.0% | |
| ATTCAACATGTGTTGGATGA+AGG | - | chr6_1:5445417-5445436 | Msa0870830:CDS | 35.0% | |
| ATAACCCTAGTAGTAATTGG+TGG | - | chr6_1:5445484-5445503 | Msa0870830:CDS | 35.0% | |
| TAACCCTAGTAGTAATTGGT+GGG | - | chr6_1:5445485-5445504 | Msa0870830:CDS | 35.0% | |
| AAGATTTGGAAACCTAGCTA+TGG | - | chr6_1:5445554-5445573 | Msa0870830:CDS | 35.0% | |
| ATGCTAAAGTTGGAAAAGCT+TGG | - | chr6_1:5445640-5445659 | Msa0870830:CDS | 35.0% | |
| ! | ATTGTAGATTTTCCAGTTCC+TGG | + | chr6_1:5445693-5445712 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTCTTCCTTTGCC+CGG | + | chr6_1:5445868-5445887 | None:intergenic | 35.0% |
| GAAAGTAAGGTAACTCTTTC+TGG | - | chr6_1:5445957-5445976 | Msa0870830:CDS | 35.0% | |
| GACTTTGATTCAATCTCTTG+AGG | - | chr6_1:5446292-5446311 | Msa0870830:CDS | 35.0% | |
| GGAAGCAAAGAAAAAGATAG+AGG | - | chr6_1:5446337-5446356 | Msa0870830:CDS | 35.0% | |
| ! | GAGAAAGAAGAATTGACTCA+AGG | - | chr6_1:5446389-5446408 | Msa0870830:CDS | 35.0% |
| ! | GAAAGAAGAATTGACTCAAG+GGG | - | chr6_1:5446391-5446410 | Msa0870830:CDS | 35.0% |
| !! | AAAGGTTGATGAAAAGGTGA+AGG | - | chr6_1:5446436-5446455 | Msa0870830:CDS | 35.0% |
| GTCACAACTAGGTTCAATCA+CGG | - | chr6_1:5444957-5444976 | Msa0870830:CDS | 40.0% | |
| TCATCCATGCTAAGAACAAG+TGG | + | chr6_1:5445231-5445250 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | chr6_1:5445274-5445293 | Msa0870830:CDS | 40.0% | |
| AACCCTAGTAGTAATTGGTG+GGG | - | chr6_1:5445486-5445505 | Msa0870830:CDS | 40.0% | |
| TTTGAGCATCCTGCAAGATT+TGG | - | chr6_1:5445540-5445559 | Msa0870830:CDS | 40.0% | |
| !!! | TCTTTTCTGGTTCCATAGCT+AGG | + | chr6_1:5445569-5445588 | None:intergenic | 40.0% |
| TATCTACTTTATGGTCCTCC+AGG | - | chr6_1:5445672-5445691 | Msa0870830:CDS | 40.0% | |
| AACTTGATCCTGCTCTCATA+AGG | - | chr6_1:5446060-5446079 | Msa0870830:CDS | 40.0% | |
| GGTTCTTGCAAGAAACTACT+TGG | - | chr6_1:5446139-5446158 | Msa0870830:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+AGG | + | chr6_1:5446230-5446249 | None:intergenic | 40.0% | |
| ! | ATTGACTCAAGGGGAAGAAA+AGG | - | chr6_1:5446400-5446419 | Msa0870830:CDS | 40.0% |
| GATGAAAAGGTGAAGGAGAA+TGG | - | chr6_1:5446443-5446462 | Msa0870830:CDS | 40.0% | |
| ! | GAGAATGGTGTCAAAGAGAA+TGG | - | chr6_1:5446458-5446477 | Msa0870830:CDS | 40.0% |
| GAGAATGGTGTGAAAGAGAA+CGG | - | chr6_1:5446473-5446492 | Msa0870830:CDS | 40.0% | |
| GTCACAACTAGGTTCAATCA+CGG | - | chr6_1:5444957-5444976 | Msa0870830:CDS | 40.0% | |
| TCATCCATGCTAAGAACAAG+TGG | + | chr6_1:5445231-5445250 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | chr6_1:5445274-5445293 | Msa0870830:CDS | 40.0% | |
| AACCCTAGTAGTAATTGGTG+GGG | - | chr6_1:5445486-5445505 | Msa0870830:CDS | 40.0% | |
| TTTGAGCATCCTGCAAGATT+TGG | - | chr6_1:5445540-5445559 | Msa0870830:CDS | 40.0% | |
| !!! | TCTTTTCTGGTTCCATAGCT+AGG | + | chr6_1:5445569-5445588 | None:intergenic | 40.0% |
| TATCTACTTTATGGTCCTCC+AGG | - | chr6_1:5445672-5445691 | Msa0870830:CDS | 40.0% | |
| AACTTGATCCTGCTCTCATA+AGG | - | chr6_1:5446060-5446079 | Msa0870830:CDS | 40.0% | |
| GGTTCTTGCAAGAAACTACT+TGG | - | chr6_1:5446139-5446158 | Msa0870830:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+AGG | + | chr6_1:5446230-5446249 | None:intergenic | 40.0% | |
| ! | ATTGACTCAAGGGGAAGAAA+AGG | - | chr6_1:5446400-5446419 | Msa0870830:CDS | 40.0% |
| GATGAAAAGGTGAAGGAGAA+TGG | - | chr6_1:5446443-5446462 | Msa0870830:CDS | 40.0% | |
| ! | GAGAATGGTGTCAAAGAGAA+TGG | - | chr6_1:5446458-5446477 | Msa0870830:CDS | 40.0% |
| GAGAATGGTGTGAAAGAGAA+CGG | - | chr6_1:5446473-5446492 | Msa0870830:CDS | 40.0% | |
| AGATGGGAATTGGGGAACTA+TGG | - | chr6_1:5444935-5444954 | Msa0870830:CDS | 45.0% | |
| ACCCTAGTAGTAATTGGTGG+GGG | - | chr6_1:5445487-5445506 | Msa0870830:CDS | 45.0% | |
| ACCCCCACCAATTACTACTA+GGG | + | chr6_1:5445491-5445510 | None:intergenic | 45.0% | |
| TACCCCCACCAATTACTACT+AGG | + | chr6_1:5445492-5445511 | None:intergenic | 45.0% | |
| ! | GGGGGTATAAAAGCACAAAG+TGG | - | chr6_1:5445505-5445524 | Msa0870830:CDS | 45.0% |
| GCTAGGTTTCCAAATCTTGC+AGG | + | chr6_1:5445552-5445571 | None:intergenic | 45.0% | |
| GTTGGAAAAGCTTGGAAACG+TGG | - | chr6_1:5445648-5445667 | Msa0870830:CDS | 45.0% | |
| ! | GTAGATTTTCCAGTTCCTGG+AGG | + | chr6_1:5445690-5445709 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+CGG | - | chr6_1:5445846-5445865 | Msa0870830:CDS | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | - | chr6_1:5445847-5445866 | Msa0870830:CDS | 45.0% | |
| TTGATCCTGCTCTCATAAGG+AGG | - | chr6_1:5446063-5446082 | Msa0870830:CDS | 45.0% | |
| TGATCCTGCTCTCATAAGGA+GGG | - | chr6_1:5446064-5446083 | Msa0870830:CDS | 45.0% | |
| TCTCATAAGGAGGGGAAGAA+TGG | - | chr6_1:5446073-5446092 | Msa0870830:CDS | 45.0% | |
| AGATGGGAATTGGGGAACTA+TGG | - | chr6_1:5444935-5444954 | Msa0870830:CDS | 45.0% | |
| ACCCTAGTAGTAATTGGTGG+GGG | - | chr6_1:5445487-5445506 | Msa0870830:CDS | 45.0% | |
| ACCCCCACCAATTACTACTA+GGG | + | chr6_1:5445491-5445510 | None:intergenic | 45.0% | |
| TACCCCCACCAATTACTACT+AGG | + | chr6_1:5445492-5445511 | None:intergenic | 45.0% | |
| ! | GGGGGTATAAAAGCACAAAG+TGG | - | chr6_1:5445505-5445524 | Msa0870830:CDS | 45.0% |
| GCTAGGTTTCCAAATCTTGC+AGG | + | chr6_1:5445552-5445571 | None:intergenic | 45.0% | |
| GTTGGAAAAGCTTGGAAACG+TGG | - | chr6_1:5445648-5445667 | Msa0870830:CDS | 45.0% | |
| ! | GTAGATTTTCCAGTTCCTGG+AGG | + | chr6_1:5445690-5445709 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+CGG | - | chr6_1:5445846-5445865 | Msa0870830:CDS | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | - | chr6_1:5445847-5445866 | Msa0870830:CDS | 45.0% | |
| TTGATCCTGCTCTCATAAGG+AGG | - | chr6_1:5446063-5446082 | Msa0870830:CDS | 45.0% | |
| TGATCCTGCTCTCATAAGGA+GGG | - | chr6_1:5446064-5446083 | Msa0870830:CDS | 45.0% | |
| TCTCATAAGGAGGGGAAGAA+TGG | - | chr6_1:5446073-5446092 | Msa0870830:CDS | 45.0% | |
| GGGGAACTATGGTCACAACT+AGG | - | chr6_1:5444946-5444965 | Msa0870830:CDS | 50.0% | |
| CTTTATGGTCCTCCAGGAAC+TGG | - | chr6_1:5445678-5445697 | Msa0870830:CDS | 50.0% | |
| ! | GATGGGATTTGGTCAGCATG+TGG | - | chr6_1:5445996-5446015 | Msa0870830:CDS | 50.0% |
| GGTCAGCATGTGGATCAGAA+AGG | - | chr6_1:5446006-5446025 | Msa0870830:CDS | 50.0% | |
| GATCCTGCTCTCATAAGGAG+GGG | - | chr6_1:5446065-5446084 | Msa0870830:CDS | 50.0% | |
| GGATGAGGAAGCAAAGCTCA+AGG | - | chr6_1:5446358-5446377 | Msa0870830:CDS | 50.0% | |
| GGGGAACTATGGTCACAACT+AGG | - | chr6_1:5444946-5444965 | Msa0870830:CDS | 50.0% | |
| CTTTATGGTCCTCCAGGAAC+TGG | - | chr6_1:5445678-5445697 | Msa0870830:CDS | 50.0% | |
| ! | GATGGGATTTGGTCAGCATG+TGG | - | chr6_1:5445996-5446015 | Msa0870830:CDS | 50.0% |
| GGTCAGCATGTGGATCAGAA+AGG | - | chr6_1:5446006-5446025 | Msa0870830:CDS | 50.0% | |
| GATCCTGCTCTCATAAGGAG+GGG | - | chr6_1:5446065-5446084 | Msa0870830:CDS | 50.0% | |
| GGATGAGGAAGCAAAGCTCA+AGG | - | chr6_1:5446358-5446377 | Msa0870830:CDS | 50.0% | |
| CTTCCCCTCCTTATGAGAGC+AGG | + | chr6_1:5446071-5446090 | None:intergenic | 55.0% | |
| CTTCCCCTCCTTATGAGAGC+AGG | + | chr6_1:5446071-5446090 | None:intergenic | 55.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | - | chr6_1:5445853-5445872 | Msa0870830:CDS | 60.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | - | chr6_1:5445853-5445872 | Msa0870830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 5444931 | 5446508 | 5444931 | ID=Msa0870830;Name=Msa0870830 |
| chr6_1 | mRNA | 5444931 | 5446508 | 5444931 | ID=Msa0870830-mRNA-1;Parent=Msa0870830;Name=Msa0870830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|525 |
| chr6_1 | exon | 5444931 | 5446508 | 5444931 | ID=Msa0870830-mRNA-1:exon:1736;Parent=Msa0870830-mRNA-1 |
| chr6_1 | CDS | 5444931 | 5446508 | 5444931 | ID=Msa0870830-mRNA-1:cds;Parent=Msa0870830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
