AlfalfaGEDB | Msa1004850

M. sativa cultivar zhongmu-4 / Msa1004850

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701
PFAM: PF00258.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004850	KEH21494.1	95.694	627	25	2	1	627	1	625	0.0	1254

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004850	sp\|Q6NPS8\|NDOR1_ARATH	66.933	626	197	6	7	627	3	623	0.0	865

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004850	A0A072TVG3	95.694	627	25	2	1	627	1	625	0.0	1254

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0185640	Msa1004850	-0.800596	1.337912e-48	-8.615850e-47
Msa0528970	Msa1004850	0.807610	4.646789e-50	-8.615850e-47
Msa0543900	Msa1004850	0.820205	7.757508e-53	-8.615850e-47
Msa0599770	Msa1004850	0.834699	2.577519e-56	-8.615850e-47
Msa0640380	Msa1004850	0.819735	9.938167e-53	-8.615850e-47
Msa0678820	Msa1004850	0.815092	1.103305e-51	-8.615850e-47
Msa1004810	Msa1004850	0.944808	9.856262e-104	-8.615850e-47
Msa1004850	Msa1208340	0.801014	1.099376e-48	-8.615850e-47
Msa1004850	Msa1252070	0.806583	7.667496e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004850	MtrunA17_Chr7g0214911	94.737	627	24	3	1	627	1	618	0.0	1236
Msa1004850	MtrunA17_Chr1g0204801	94.322	634	21	4	1	627	1	626	0.0	1229
Msa1004850	MtrunA17_Chr7g0264101	86.038	573	64	4	63	627	41	605	0.0	1010
Msa1004850	MtrunA17_Chr3g0132841	29.938	648	385	19	11	626	82	692	7.83e-83	274
Msa1004850	MtrunA17_Chr4g0072351	29.202	589	369	15	55	626	144	701	5.78e-76	256
Msa1004850	MtrunA17_Chr2g0292421	27.273	198	126	7	436	626	192	378	3.22e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004850	AT3G02280.1	66.933	626	197	6	7	627	3	623	0.0	865
Msa1004850	AT3G02280.2	66.933	626	197	6	7	627	3	623	0.0	865
Msa1004850	AT3G02280.3	66.933	626	197	6	7	627	3	623	0.0	865
Msa1004850	AT4G30210.2	28.233	634	411	12	11	626	104	711	3.13e-79	265
Msa1004850	AT4G30210.3	28.233	634	411	12	11	626	167	774	1.48e-78	265
Msa1004850	AT4G30210.1	28.346	635	410	13	11	626	104	712	9.59e-78	261
Msa1004850	AT4G24520.2	28.752	633	406	16	11	626	84	688	1.07e-76	258
Msa1004850	AT4G24520.1	28.616	636	407	16	11	626	84	692	3.79e-76	257
Msa1004850	AT3G24710.1	61.538	65	25	0	563	627	2	66	1.17e-19	83.6

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Find 168 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACAGCTTGTTCCTG+TGG	0.624359	7_1:-2511704	None:intergenic
AAAAGATTAAAGGACCTTGG+AGG	0.624267	7_1:+2512740	Msa1004850:CDS
AAACCAGAATTCTTACCAAA+TGG	0.470639	7_1:+2513319	Msa1004850:CDS
AAAGCTGATGTTACATCTGT+AGG	0.498104	7_1:-2517898	None:intergenic
AAAGGTGCACATCCTGTGCC+CGG	0.547880	7_1:-2517574	None:intergenic
AAATCATCTTCTGACAGAAG+TGG	0.583346	7_1:+2514203	Msa1004850:CDS
AACTCAAACCGGTAACGCAT+TGG	0.485129	7_1:+2511479	Msa1004850:CDS
AAGATGCAGTTAGGTGGATT+AGG	0.322721	7_1:+2517959	Msa1004850:CDS
AATACGAATCGCGTCAATAT+TGG	0.257723	7_1:-2511388	None:intergenic
AATCATCTTCTGACAGAAGT+GGG	0.583964	7_1:+2514204	Msa1004850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCGTATTTGTAGAGTTTAG+AGG	+	chr7_1:2511403-2511422	Msa1004850:five_prime_UTR	30.0%
TGAAGAGAAAGAAGATTGTT+GGG	-	chr7_1:2511552-2511571	None:intergenic	30.0%
ATGAAGAGAAAGAAGATTGT+TGG	-	chr7_1:2511553-2511572	None:intergenic	30.0%
TCGTAACTTAAAAATTCCGA+TGG	+	chr7_1:2512615-2512634	Msa1004850:intron	30.0%
AAACAATTACATTGTGCTTG+TGG	+	chr7_1:2512863-2512882	Msa1004850:intron	30.0%
TTCTTTGATAAATGCTTCCT+TGG	+	chr7_1:2513008-2513027	Msa1004850:intron	30.0%
AAACCAGAATTCTTACCAAA+TGG	+	chr7_1:2513319-2513338	Msa1004850:CDS	30.0%
AGATGTTTCGATTCAAGATA+CGG	+	chr7_1:2513345-2513364	Msa1004850:CDS	30.0%
TAGGTCACAATAATAGCTAA+TGG	-	chr7_1:2513481-2513500	None:intergenic	30.0%
TGGTGAAGTAATGAAAACAA+AGG	-	chr7_1:2513631-2513650	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	2511359	2518468	2511359	ID=Msa1004850;Name=Msa1004850
chr7_1	mRNA	2511359	2518468	2511359	ID=Msa1004850-mRNA-1;Parent=Msa1004850;Name=Msa1004850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=70\|0.90\|0.91\|1\|1\|1\|12\|442\|627
chr7_1	exon	2511359	2511584	2511359	ID=Msa1004850-mRNA-1:exon:1016;Parent=Msa1004850-mRNA-1
chr7_1	exon	2511695	2511772	2511695	ID=Msa1004850-mRNA-1:exon:1017;Parent=Msa1004850-mRNA-1
chr7_1	exon	2512343	2512447	2512343	ID=Msa1004850-mRNA-1:exon:1018;Parent=Msa1004850-mRNA-1
chr7_1	exon	2512719	2512810	2512719	ID=Msa1004850-mRNA-1:exon:1019;Parent=Msa1004850-mRNA-1
chr7_1	exon	2513261	2513436	2513261	ID=Msa1004850-mRNA-1:exon:1020;Parent=Msa1004850-mRNA-1
chr7_1	exon	2514150	2514250	2514150	ID=Msa1004850-mRNA-1:exon:1021;Parent=Msa1004850-mRNA-1
chr7_1	exon	2514567	2514641	2514567	ID=Msa1004850-mRNA-1:exon:1022;Parent=Msa1004850-mRNA-1
chr7_1	exon	2514881	2514991	2514881	ID=Msa1004850-mRNA-1:exon:1023;Parent=Msa1004850-mRNA-1
chr7_1	exon	2515730	2515852	2515730	ID=Msa1004850-mRNA-1:exon:1024;Parent=Msa1004850-mRNA-1
chr7_1	exon	2516446	2516565	2516446	ID=Msa1004850-mRNA-1:exon:1025;Parent=Msa1004850-mRNA-1
chr7_1	exon	2516901	2517117	2516901	ID=Msa1004850-mRNA-1:exon:1026;Parent=Msa1004850-mRNA-1
chr7_1	exon	2517497	2518468	2517497	ID=Msa1004850-mRNA-1:exon:1027;Parent=Msa1004850-mRNA-1
chr7_1	five_prime_UTR	2511359	2511428	2511359	ID=Msa1004850-mRNA-1:five_prime_utr;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2511429	2511584	2511429	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2511695	2511772	2511695	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2512343	2512447	2512343	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2512719	2512810	2512719	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2513261	2513436	2513261	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2514150	2514250	2514150	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2514567	2514641	2514567	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2514881	2514991	2514881	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2515730	2515852	2515730	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2516446	2516565	2516446	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2516901	2517117	2516901	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	CDS	2517497	2518026	2517497	ID=Msa1004850-mRNA-1:cds;Parent=Msa1004850-mRNA-1
chr7_1	three_prime_UTR	2518027	2518468	2518027	ID=Msa1004850-mRNA-1:three_prime_utr;Parent=Msa1004850-mRNA-1

Gene Sequence

>Msa1004850

ATGAAAGAGATTCAACAACAACAGCATCATAAGCTTCTGATTCTATACGCAACTCAAACCGGTAACGCATTGGATGCTGCTGCTGAACGTCTTGCTCGTGAAGCTGAACGTAGAGCTTGCCCCAACAATCTTCTTTCTCTTCATCAATATGATCCTAATCTGTTGCCACAGGAACAAGCTGTGGTTTTTGTGGTTTCTACTACTGGTCAGGGTGATACTCCTGATTCTATGAAGGTCTTTTGGAGGTTTCTTCTTCAGAGAAGCCTAAGCCAGCATTGGCTGAAAGGAGTACACTACGCCGTTTTCGGTTTGGGCGATTCTGGTTATCAGAAGTACAATTTTGTTGCAAAGAAGCTGGACAAAAGATTAAAGGACCTTGGAGGAACAACTATTTTAGAAAGAGGCTTGGGAGATGATCAGCACCCTTCAGGCTATGAAGGTACTCTTGATCCCTGGATGTCTTCTCTATGGAGAATGTTAAACACGATCAAACCAGAATTCTTACCAAATGGTCCAGATGTTTCGATTCAAGATACGGTGTTGATTGACCGACCTAAAGTCCAAATCACATATCACAATATTGCGTCACATTTTTCAACTGCCTCAGATGATCATATGATTCTTACAGACATTGGGAGTGTTCGTTCAATGCATCCTGGAAAATCATCTTCTGACAGAAGTGGGCATCCTGAATGCTTTCTTAAGATGGTGAAGAATCTTCCTTTGACCAAACCAAACTGTGGAAAAGATGTTCGTCATTTTGAATTTGAACTTGAGTCACATGCTATCGAGTATGACACTGGTGATGTTCTTGAGATTCTCCCTGGTCAAGATTCAGCTGCAGTTGATGCTTTCATACGACGTTGTAATTTGGATCCTGATGCATTCATCAGTGTTAGTCCTAGAGGAACGGATGATTGCAATGGACATGGCTCTAGAATACCCGTAAAATTAAAAACTTTTGTGGAACTGACTATGGATGTAGCTTCTGCTTCACCTCGGCGGTATTTCTTTGAGGTTATGAGCTTTTTTGCAACAGCTGAACATGAGAAGGAAAGACTTCAGTATTTTTCTTCACCTGAAGGAAGAGATGACCTGTACCAATACAACCAGAAGGAGAGGAGAACTGTTCTTGAGGTGCTCGAAGATTTTCCTTCTGTTCAAATGCCACTTGAGTGGCTAATCCAATTGGTTCCTATGCTGAAAACAAGAGCATTCTCTATTTCTTCTTCTCAATCAGTTCACCCCAATCAAGTACACTTGACTGTGAGTGTGGTGTCCTGGACAACACCTTACAAGAGGAAAAAGAAAGGACTATGCTCCTCGTGGCTAGCCGCATTAGATCCCTGCGATGCTGTCGGTATTCCTGCTTGGTTCCAAAAAGGCTCCCTTCCTACACCATCACCATCACTTCCCCTCATACTTGTTGGACCGGGCACAGGATGTGCACCTTTTCGCGGATTTATCGAGGAAAGGGCATTGCAAAGTAAAACTATTTCCACTGCTCCAATTATGTTCTTCTTTGGCTGTTGGAATGAAGACGGTGACTTTTTATACAAAGACTTGTGGTTGAGTCATTCACAGAACAATGGTGTACTTTCAGAAGCAAATGGTGGAGGTTTCTATGTTGCTTTCTCTCGAGACCAGCCTGAGAAAGTTTATGTTCAGCATAAGATGAAGGAACACAGTGGAAGGGTTTGGAACCTATTAGCCGATGGAGCTGCTGTTTATATAGCAGGTTCATCAACCAAAATGCCTACAGATGTAACATCAGCTTTTGAGGAAATTGTATCTAAAGAAAATGAGGTTTCAAAGGAAGATGCAGTTAGGTGGATTAGGGCATTAGAAAAGTGTGGTAAATATCACATTGAAGCATGGTCTTGA

Protein sequence

>Msa1004850

MKEIQQQQHHKLLILYATQTGNALDAAAERLAREAERRACPNNLLSLHQYDPNLLPQEQAVVFVVSTTGQGDTPDSMKVFWRFLLQRSLSQHWLKGVHYAVFGLGDSGYQKYNFVAKKLDKRLKDLGGTTILERGLGDDQHPSGYEGTLDPWMSSLWRMLNTIKPEFLPNGPDVSIQDTVLIDRPKVQITYHNIASHFSTASDDHMILTDIGSVRSMHPGKSSSDRSGHPECFLKMVKNLPLTKPNCGKDVRHFEFELESHAIEYDTGDVLEILPGQDSAAVDAFIRRCNLDPDAFISVSPRGTDDCNGHGSRIPVKLKTFVELTMDVASASPRRYFFEVMSFFATAEHEKERLQYFSSPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPLEWLIQLVPMLKTRAFSISSSQSVHPNQVHLTVSVVSWTTPYKRKKKGLCSSWLAALDPCDAVGIPAWFQKGSLPTPSPSLPLILVGPGTGCAPFRGFIEERALQSKTISTAPIMFFFGCWNEDGDFLYKDLWLSHSQNNGVLSEANGGGFYVAFSRDQPEKVYVQHKMKEHSGRVWNLLADGAAVYIAGSSTKMPTDVTSAFEEIVSKENEVSKEDAVRWIRALEKCGKYHIEAWS*