AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208340 MtrunA17_Chr4g0057281 95.105 286 14 0 1 286 1 286 0.0 552
Msa1208340 MtrunA17_Chr5g0397981 73.868 287 70 3 1 286 19 301 1.39e-158 443
Msa1208340 MtrunA17_Chr8g0350401 60.854 281 103 2 1 274 1 281 2.94e-126 361
Msa1208340 MtrunA17_Chr1g0203751 62.308 260 97 1 19 278 28 286 7.01e-121 347
Msa1208340 MtrunA17_Chr6g0472801 58.672 271 110 2 13 282 16 285 2.76e-117 338
Msa1208340 MtrunA17_Chr7g0265551 55.670 291 117 2 1 280 73 362 7.85e-113 330
Msa1208340 MtrunA17_Chr7g0272101 26.642 274 168 7 22 278 4 261 9.35e-29 110
Msa1208340 MtrunA17_Chr4g0010881 27.132 258 165 5 22 277 4 240 4.80e-27 105
Msa1208340 MtrunA17_Chr1g0192371 25.862 290 165 9 18 273 7 280 3.65e-22 93.2
Msa1208340 MtrunA17_Chr7g0272091 25.357 280 182 5 18 273 6 282 2.37e-21 91.3
Msa1208340 MtrunA17_Chr1g0189611 35.417 144 92 1 21 163 6 149 5.38e-21 89.7
Msa1208340 MtrunA17_Chr1g0189821 28.090 267 175 6 21 275 6 267 8.12e-21 89.4
Msa1208340 MtrunA17_Chr1g0189671 36.111 144 88 2 21 163 6 146 1.07e-20 89.4
Msa1208340 MtrunA17_Chr1g0189641 35.417 144 89 2 21 163 6 146 7.97e-20 87.0
Msa1208340 MtrunA17_Chr1g0189721 34.247 146 92 2 19 163 4 146 6.10e-19 84.3
Msa1208340 MtrunA17_Chr1g0189751 28.223 287 174 8 19 286 4 277 3.43e-18 82.8
Msa1208340 MtrunA17_Chr1g0203331 36.154 130 79 2 36 164 6 132 3.67e-18 81.6
Msa1208340 MtrunA17_Chr1g0189591 36.054 147 88 3 21 163 15 159 4.37e-18 82.4
Msa1208340 MtrunA17_Chr1g0203281 33.333 144 92 2 21 163 6 146 1.54e-17 80.5
Msa1208340 MtrunA17_Chr1g0189781 32.667 150 99 2 16 163 5 154 2.44e-17 80.1
Msa1208340 MtrunA17_Chr1g0189621 33.562 146 92 3 21 165 6 147 2.62e-17 79.7
Msa1208340 MtrunA17_Chr1g0189771 31.944 144 96 2 22 163 15 158 1.52e-15 73.2
Msa1208340 MtrunA17_Chr3g0097191 32.886 149 90 5 19 164 10 151 2.21e-15 74.3
Msa1208340 MtrunA17_Chr1g0190071 32.653 147 93 3 21 163 6 150 2.19e-14 71.6
Msa1208340 MtrunA17_Chr1g0189661 33.333 147 91 3 21 163 6 149 2.54e-13 68.9
Msa1208340 MtrunA17_Chr1g0189711 27.805 205 127 5 21 219 6 195 2.59e-12 65.9
Msa1208340 MtrunA17_Chr3g0095261 32.847 137 80 6 19 152 10 137 3.80e-12 65.5
Msa1208340 MtrunA17_Chr3g0078331 27.326 172 106 4 7 163 5 172 4.32e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208340 AT1G12710.1 68.030 269 82 3 16 282 25 291 6.27e-135 383
Msa1208340 AT3G61060.1 62.782 266 97 2 14 278 20 284 6.48e-127 363
Msa1208340 AT1G12710.2 58.842 311 82 4 16 282 25 333 3.21e-126 363
Msa1208340 AT3G61060.2 62.547 267 97 3 14 278 20 285 3.12e-125 359
Msa1208340 AT1G63090.1 65.769 260 86 2 16 274 23 280 1.20e-122 352
Msa1208340 AT5G52120.1 52.174 276 127 1 7 277 9 284 4.94e-104 305
Msa1208340 AT3G53000.1 54.104 268 110 3 17 273 19 284 1.07e-99 294
Msa1208340 AT2G02360.1 36.129 155 85 4 10 161 8 151 5.80e-25 101
Msa1208340 AT2G02340.1 31.429 175 113 3 5 176 22 192 9.88e-23 95.9
Msa1208340 AT2G02230.1 34.266 143 87 2 22 163 35 171 4.64e-21 91.7
Msa1208340 AT1G09155.1 24.735 283 184 6 22 277 3 283 2.98e-20 88.6
Msa1208340 AT2G02240.1 34.507 142 86 3 22 162 64 199 5.06e-20 88.6
Msa1208340 AT5G24560.1 28.276 145 97 2 21 164 5 143 5.98e-18 80.5
Msa1208340 AT2G02350.2 31.544 149 86 5 18 160 23 161 8.34e-18 82.0
Msa1208340 AT2G02250.1 27.875 287 165 12 17 283 44 308 8.86e-18 82.0
Msa1208340 AT1G80110.1 24.528 265 180 8 19 273 1 255 2.19e-17 80.1
Msa1208340 AT2G02310.1 25.651 269 176 8 21 275 47 305 3.98e-17 80.1
Msa1208340 AT1G56240.1 26.071 280 176 7 22 273 4 280 7.94e-16 76.3
Msa1208340 AT1G56250.1 24.232 293 165 6 22 273 4 280 1.32e-15 75.5
Msa1208340 AT2G02300.1 25.993 277 163 9 18 277 33 284 3.21e-14 71.6
Msa1208340 AT2G02320.1 24.746 295 181 12 4 275 24 300 8.34e-14 70.9

Find 77 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACAGCTACACAGCTTTC+TGG 0.183101 8_1:-66379823 None:intergenic
TTATTCTTCCGAATACATTT+AGG 0.199539 8_1:+66381127 Msa1208340:CDS
GATAATTTGTTTAATTAGTA+TGG 0.212453 8_1:+66381649 Msa1208340:three_prime_UTR
TTGAGCTGAGTTAAGGTTAA+TGG 0.240519 8_1:+66379738 Msa1208340:exon
TTGATTCTTCAGTGGGAATA+TGG 0.245615 8_1:-66380242 None:intergenic
ATCATAATTAGAGGGAAGTT+TGG 0.273067 8_1:-66379938 None:intergenic
GCTAAAGGGTTGTCAATAAC+TGG 0.296742 8_1:+66380195 Msa1208340:CDS
CTTCAAACCACCAGATTTGT+TGG 0.309545 8_1:-66381060 None:intergenic
AATTCTCCTAAACTTGGTTT+TGG 0.321554 8_1:-66379799 None:intergenic
TATTCTTCCGAATACATTTA+GGG 0.326850 8_1:+66381128 Msa1208340:CDS
TATTATTATTGTAGAAAGTT+TGG 0.336627 8_1:+66380133 Msa1208340:intron
GGGAAACCCGCCAAGAGATT+TGG 0.340849 8_1:+66381148 Msa1208340:CDS
CCCGCTGTCACGTTCGCTTT+CGG 0.346082 8_1:+66379575 Msa1208340:five_prime_UTR
CTATATGTTCCTGCTGGAAA+TGG 0.353545 8_1:-66381103 None:intergenic
CGGGTTTCCCTAAATGTATT+CGG 0.356289 8_1:-66381135 None:intergenic
TGAGCTGAGTTAAGGTTAAT+GGG 0.368335 8_1:+66379739 Msa1208340:exon
AATTATAACATCATAATTAG+AGG 0.373488 8_1:-66379947 None:intergenic
TAAAGTGTGTTTGTCTATAT+CGG 0.379273 8_1:+66380173 Msa1208340:CDS
GTCCATAGTTGGAATCTAAC+AGG 0.395466 8_1:-66381217 None:intergenic
AAGCTGTGTAGCTGTTATAA+TGG 0.396206 8_1:+66379828 Msa1208340:CDS
TCATCACCAAAACCAAGTTT+AGG 0.402083 8_1:+66379793 Msa1208340:CDS
TTGCGTATCTCCAACAAATC+TGG 0.415817 8_1:+66381050 Msa1208340:CDS
GTTTGAATTGAGCTGAGTTA+AGG 0.418209 8_1:+66379731 Msa1208340:five_prime_UTR
AGCCTGTTAGATTCCAACTA+TGG 0.436078 8_1:+66381215 Msa1208340:CDS
GTTTCAAGTTTGTATATATG+TGG 0.438544 8_1:-66379677 None:intergenic
TGGTAATAGCGCCATTTACC+TGG 0.441087 8_1:-66381283 None:intergenic
TGCAACACAGAACATGTTCA+TGG 0.443142 8_1:+66381181 Msa1208340:CDS
GGATTGATGATCGAAGATAT+TGG 0.446080 8_1:+66380217 Msa1208340:CDS
CCGCCAAGAGATTTGGAAGA+AGG 0.447038 8_1:+66381155 Msa1208340:CDS
AGCTGTTATAATGGAATACT+TGG 0.448318 8_1:+66379837 Msa1208340:CDS
AACCCTTCTTCCAAATCTCT+TGG 0.453456 8_1:-66381158 None:intergenic
CCTTCTCATTTGGGGAAAAG+AGG 0.454751 8_1:+66379997 Msa1208340:CDS
AGCTTCAATACTTTCGATGA+AGG 0.456690 8_1:+66380039 Msa1208340:CDS
CTATGCATGTATCAAAGATT+AGG 0.458711 8_1:+66381495 Msa1208340:three_prime_UTR
CCTTCTTCCAAATCTCTTGG+CGG 0.463503 8_1:-66381155 None:intergenic
TCTGGTAATTCTCCTAAACT+TGG 0.464696 8_1:-66379805 None:intergenic
CACAGAACATGTTCATGGTT+GGG 0.465386 8_1:+66381186 Msa1208340:CDS
TATATGTTCCTGCTGGAAAT+GGG 0.468372 8_1:-66381102 None:intergenic
TGTTCTATCATAATCTTGTA+TGG 0.469913 8_1:+66381674 Msa1208340:three_prime_UTR
CGCCAAGAGATTTGGAAGAA+GGG 0.472287 8_1:+66381156 Msa1208340:CDS
TGTTTGTCTATATCGGCTAA+AGG 0.472662 8_1:+66380180 Msa1208340:CDS
CTTCTTCCAAATCTCTTGGC+GGG 0.472849 8_1:-66381154 None:intergenic
TCAGCTCAATTCAAACAACT+TGG 0.487550 8_1:-66379724 None:intergenic
GTTTGTCTATATCGGCTAAA+GGG 0.489431 8_1:+66380181 Msa1208340:CDS
CTTCTCATTTGGGGAAAAGA+GGG 0.492520 8_1:+66379998 Msa1208340:CDS
AATAAGCTATATGTTCCTGC+TGG 0.503889 8_1:-66381109 None:intergenic
AGTTTGGTTGGATAGAAGCA+TGG 0.503977 8_1:+66380149 Msa1208340:CDS
ATTATTGTAGAAAGTTTGGT+TGG 0.506585 8_1:+66380137 Msa1208340:intron
TTTGAACTACTCTTAACCTA+AGG 0.508950 8_1:+66381453 Msa1208340:exon
TCTTACCTTGATTCTTCAGT+GGG 0.519553 8_1:-66380249 None:intergenic
ACACAGAACATGTTCATGGT+TGG 0.524349 8_1:+66381185 Msa1208340:CDS
GTATCCTAGTGAGTTTAGAA+AGG 0.524884 8_1:+66381420 Msa1208340:CDS
GATCATCTGAAGTCCATAGT+TGG 0.529126 8_1:-66381228 None:intergenic
CAGCTCAATTCAAACAACTT+GGG 0.533271 8_1:-66379723 None:intergenic
ATTGAGTTCCCATTTCCAGC+AGG 0.540368 8_1:+66381094 Msa1208340:CDS
GTTTGGTTGGATAGAAGCAT+GGG 0.542266 8_1:+66380150 Msa1208340:CDS
ATTGATTGCACACACACTAA+AGG 0.551213 8_1:+66381370 Msa1208340:CDS
CCGAAAGCGAACGTGACAGC+GGG 0.552491 8_1:-66379575 None:intergenic
TTAACCTTTCTAAACTCACT+AGG 0.563266 8_1:-66381424 None:intergenic
ATCTTACCTTGATTCTTCAG+TGG 0.563619 8_1:-66380250 None:intergenic
ACAAATCTGGTGGTTTGAAG+TGG 0.565964 8_1:+66381063 Msa1208340:CDS
ATCTTCAACCACAAAATCGC+CGG 0.570051 8_1:-66381308 None:intergenic
CTAAAGGGTTGTCAATAACT+GGG 0.571485 8_1:+66380196 Msa1208340:CDS
ATATTCCCACTGAAGAATCA+AGG 0.574725 8_1:+66380244 Msa1208340:CDS
AGAATATTGTATACTTGTGC+CGG 0.575065 8_1:+66381700 Msa1208340:three_prime_UTR
GCTGTCACGTTCGCTTTCGG+AGG 0.580011 8_1:+66379578 Msa1208340:five_prime_UTR
ATTATAACATCATAATTAGA+GGG 0.581280 8_1:-66379946 None:intergenic
CAACCACAAAATCGCCGGCA+TGG 0.585784 8_1:-66381303 None:intergenic
GAAGCTAATTTGCAAATCTG+AGG 0.595553 8_1:-66379865 None:intergenic
CGTATCTCCAACAAATCTGG+TGG 0.613155 8_1:+66381053 Msa1208340:CDS
GCTAATTTGCAAATCTGAGG+AGG 0.616624 8_1:-66379862 None:intergenic
AAATGGCGCTATTACCATGC+CGG 0.633820 8_1:+66381289 Msa1208340:CDS
TACTTTCGATGAAGGAACCA+AGG 0.641635 8_1:+66380047 Msa1208340:CDS
GATTGCACACACACTAAAGG+TGG 0.653493 8_1:+66381373 Msa1208340:CDS
AAGAAGCACCATGAAAAGCA+CGG 0.655921 8_1:-66379894 None:intergenic
TCCGAAAGCGAACGTGACAG+CGG 0.658699 8_1:-66379576 None:intergenic
ATCTGGTGGTTTGAAGTGGA+CGG 0.666571 8_1:+66381067 Msa1208340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAAATTAATTAAAAG+AGG - chr8_1:66380574-66380593 None:intergenic 10.0%
!!! TATATTTTTATTTTTACCTT+AGG - chr8_1:66381472-66381491 None:intergenic 10.0%
!! ATACTAAAATTAATTAAAAG+AGG - chr8_1:66380574-66380593 None:intergenic 10.0%
!!! TATATTTTTATTTTTACCTT+AGG - chr8_1:66381472-66381491 None:intergenic 10.0%
!! ATTATAACATCATAATTAGA+GGG - chr8_1:66379949-66379968 None:intergenic 15.0%
!! AATTATAACATCATAATTAG+AGG - chr8_1:66379950-66379969 None:intergenic 15.0%
!! ATAATTCAAAAAATCTTTGA+TGG + chr8_1:66379964-66379983 Msa1208340:CDS 15.0%
!! TATTATTATTGTAGAAAGTT+TGG + chr8_1:66380133-66380152 Msa1208340:intron 15.0%
!!! TTGAATTGATTTTATTGATT+TGG + chr8_1:66380446-66380465 Msa1208340:intron 15.0%
!!! TTGATTTTCTTTTATTATTC+TGG + chr8_1:66380847-66380866 Msa1208340:intron 15.0%
!!! GATAATTTGTTTAATTAGTA+TGG + chr8_1:66381649-66381668 Msa1208340:three_prime_UTR 15.0%
!! ATTATAACATCATAATTAGA+GGG - chr8_1:66379949-66379968 None:intergenic 15.0%
!! AATTATAACATCATAATTAG+AGG - chr8_1:66379950-66379969 None:intergenic 15.0%
!! ATAATTCAAAAAATCTTTGA+TGG + chr8_1:66379964-66379983 Msa1208340:CDS 15.0%
!! TATTATTATTGTAGAAAGTT+TGG + chr8_1:66380133-66380152 Msa1208340:intron 15.0%
!!! TTGAATTGATTTTATTGATT+TGG + chr8_1:66380446-66380465 Msa1208340:intron 15.0%
!!! TTGATTTTCTTTTATTATTC+TGG + chr8_1:66380847-66380866 Msa1208340:intron 15.0%
!!! GATAATTTGTTTAATTAGTA+TGG + chr8_1:66381649-66381668 Msa1208340:three_prime_UTR 15.0%
!!! TTTATGTTAATTTGTTACCT+TGG - chr8_1:66380067-66380086 None:intergenic 20.0%
!!! TTATAGGTAGAATTGATTTT+GGG + chr8_1:66380630-66380649 Msa1208340:intron 20.0%
!! GAAATTAAAAAGACATAACT+TGG - chr8_1:66380929-66380948 None:intergenic 20.0%
!!! TTAGTTTGGAAATAAAGTTT+CGG + chr8_1:66380984-66381003 Msa1208340:intron 20.0%
!!! AAAAAAAATAGGGTTCTTTT+AGG + chr8_1:66381571-66381590 Msa1208340:three_prime_UTR 20.0%
!!! TTTATGTTAATTTGTTACCT+TGG - chr8_1:66380067-66380086 None:intergenic 20.0%
!!! TTATAGGTAGAATTGATTTT+GGG + chr8_1:66380630-66380649 Msa1208340:intron 20.0%
!! GAAATTAAAAAGACATAACT+TGG - chr8_1:66380929-66380948 None:intergenic 20.0%
!!! TTAGTTTGGAAATAAAGTTT+CGG + chr8_1:66380984-66381003 Msa1208340:intron 20.0%
!!! AAAAAAAATAGGGTTCTTTT+AGG + chr8_1:66381571-66381590 Msa1208340:three_prime_UTR 20.0%
!!! GTTTCAAGTTTGTATATATG+TGG - chr8_1:66379680-66379699 None:intergenic 25.0%
!!! AAAATCGTTGCTTTTGTATA+TGG + chr8_1:66380085-66380104 Msa1208340:intron 25.0%
! ATTATTGTAGAAAGTTTGGT+TGG + chr8_1:66380137-66380156 Msa1208340:intron 25.0%
! TAAAGTGTGTTTGTCTATAT+CGG + chr8_1:66380173-66380192 Msa1208340:CDS 25.0%
!! TTTCATGTTCTAGTGTATTT+TGG + chr8_1:66380368-66380387 Msa1208340:intron 25.0%
! TTTATGTTTGCATGCATTTA+CGG + chr8_1:66380495-66380514 Msa1208340:intron 25.0%
! TTTACGGAAAAAATTATGCT+TGG + chr8_1:66380511-66380530 Msa1208340:intron 25.0%
! AAAATTATGCTTGGAGAATT+TGG + chr8_1:66380520-66380539 Msa1208340:intron 25.0%
!!! GTATTGATTCTTTGTTAACT+CGG + chr8_1:66380590-66380609 Msa1208340:intron 25.0%
!!! CTTATAGGTAGAATTGATTT+TGG + chr8_1:66380629-66380648 Msa1208340:intron 25.0%
!!! TATAGGTAGAATTGATTTTG+GGG + chr8_1:66380631-66380650 Msa1208340:intron 25.0%
!! CTATTAGTGTTGAATTAGTT+TGG + chr8_1:66380970-66380989 Msa1208340:intron 25.0%
! GCAAATGATAAAGATAACAT+TGG - chr8_1:66381017-66381036 None:intergenic 25.0%
! TTATTCTTCCGAATACATTT+AGG + chr8_1:66381127-66381146 Msa1208340:CDS 25.0%
! TATTCTTCCGAATACATTTA+GGG + chr8_1:66381128-66381147 Msa1208340:CDS 25.0%
!! TTAGAATTTTGTAGAATCCA+AGG + chr8_1:66381595-66381614 Msa1208340:three_prime_UTR 25.0%
!! TAGAATTTTGTAGAATCCAA+GGG + chr8_1:66381596-66381615 Msa1208340:three_prime_UTR 25.0%
! TGTTCTATCATAATCTTGTA+TGG + chr8_1:66381674-66381693 Msa1208340:three_prime_UTR 25.0%
!!! GTTTCAAGTTTGTATATATG+TGG - chr8_1:66379680-66379699 None:intergenic 25.0%
!!! AAAATCGTTGCTTTTGTATA+TGG + chr8_1:66380085-66380104 Msa1208340:intron 25.0%
! ATTATTGTAGAAAGTTTGGT+TGG + chr8_1:66380137-66380156 Msa1208340:intron 25.0%
! TAAAGTGTGTTTGTCTATAT+CGG + chr8_1:66380173-66380192 Msa1208340:CDS 25.0%
!! TTTCATGTTCTAGTGTATTT+TGG + chr8_1:66380368-66380387 Msa1208340:intron 25.0%
! TTTATGTTTGCATGCATTTA+CGG + chr8_1:66380495-66380514 Msa1208340:intron 25.0%
! TTTACGGAAAAAATTATGCT+TGG + chr8_1:66380511-66380530 Msa1208340:intron 25.0%
! AAAATTATGCTTGGAGAATT+TGG + chr8_1:66380520-66380539 Msa1208340:intron 25.0%
!!! GTATTGATTCTTTGTTAACT+CGG + chr8_1:66380590-66380609 Msa1208340:intron 25.0%
!!! CTTATAGGTAGAATTGATTT+TGG + chr8_1:66380629-66380648 Msa1208340:intron 25.0%
!!! TATAGGTAGAATTGATTTTG+GGG + chr8_1:66380631-66380650 Msa1208340:intron 25.0%
!! CTATTAGTGTTGAATTAGTT+TGG + chr8_1:66380970-66380989 Msa1208340:intron 25.0%
! GCAAATGATAAAGATAACAT+TGG - chr8_1:66381017-66381036 None:intergenic 25.0%
! TTATTCTTCCGAATACATTT+AGG + chr8_1:66381127-66381146 Msa1208340:CDS 25.0%
! TATTCTTCCGAATACATTTA+GGG + chr8_1:66381128-66381147 Msa1208340:CDS 25.0%
!! TTAGAATTTTGTAGAATCCA+AGG + chr8_1:66381595-66381614 Msa1208340:three_prime_UTR 25.0%
!! TAGAATTTTGTAGAATCCAA+GGG + chr8_1:66381596-66381615 Msa1208340:three_prime_UTR 25.0%
! TGTTCTATCATAATCTTGTA+TGG + chr8_1:66381674-66381693 Msa1208340:three_prime_UTR 25.0%
!!! TTTTGGTGATGATGATGATT+GGG - chr8_1:66379785-66379804 None:intergenic 30.0%
! AATTCTCCTAAACTTGGTTT+TGG - chr8_1:66379802-66379821 None:intergenic 30.0%
! AGCTGTTATAATGGAATACT+TGG + chr8_1:66379837-66379856 Msa1208340:CDS 30.0%
!! TTCTTTGGCTGATTTTGTTT+GGG + chr8_1:66379912-66379931 Msa1208340:CDS 30.0%
ATCATAATTAGAGGGAAGTT+TGG - chr8_1:66379941-66379960 None:intergenic 30.0%
! TTCTTCTTTTCCTTCTCATT+TGG + chr8_1:66379987-66380006 Msa1208340:CDS 30.0%
! TCTTCTTTTCCTTCTCATTT+GGG + chr8_1:66379988-66380007 Msa1208340:CDS 30.0%
TGTGAACTATGAAGTTCAAA+GGG + chr8_1:66380310-66380329 Msa1208340:intron 30.0%
AGCTAGAAATGATAGCTTAT+AGG + chr8_1:66380614-66380633 Msa1208340:intron 30.0%
GACAGCAAATATGTTATGTT+TGG - chr8_1:66380682-66380701 None:intergenic 30.0%
! TAACCAAAACTGATTCTAAG+AGG + chr8_1:66380715-66380734 Msa1208340:intron 30.0%
!!! ATCCATTTTTTCCCATGTTT+AGG + chr8_1:66380749-66380768 Msa1208340:intron 30.0%
AAAGCTAAGTATTTGACCTT+TGG - chr8_1:66380776-66380795 None:intergenic 30.0%
GAAGAGAAAGATATTGATGA+AGG + chr8_1:66380818-66380837 Msa1208340:intron 30.0%
!!! GAAACTAGACTTGCTAATTT+TGG - chr8_1:66380951-66380970 None:intergenic 30.0%
!!! TCATCGCAATGTTTTTTGAA+AGG + chr8_1:66381259-66381278 Msa1208340:CDS 30.0%
TTAACCTTTCTAAACTCACT+AGG - chr8_1:66381427-66381446 None:intergenic 30.0%
TTTGAACTACTCTTAACCTA+AGG + chr8_1:66381453-66381472 Msa1208340:exon 30.0%
CTATGCATGTATCAAAGATT+AGG + chr8_1:66381495-66381514 Msa1208340:three_prime_UTR 30.0%
! AGAGAATCGAGTTTTCAATA+GGG + chr8_1:66381523-66381542 Msa1208340:three_prime_UTR 30.0%
! GTTTTCAATAGGGTTCTTTT+AGG + chr8_1:66381533-66381552 Msa1208340:three_prime_UTR 30.0%
! AGAATTTTGTAGAATCCAAG+GGG + chr8_1:66381597-66381616 Msa1208340:three_prime_UTR 30.0%
AGAATATTGTATACTTGTGC+CGG + chr8_1:66381700-66381719 Msa1208340:three_prime_UTR 30.0%
!!! TTTTGGTGATGATGATGATT+GGG - chr8_1:66379785-66379804 None:intergenic 30.0%
! AATTCTCCTAAACTTGGTTT+TGG - chr8_1:66379802-66379821 None:intergenic 30.0%
! AGCTGTTATAATGGAATACT+TGG + chr8_1:66379837-66379856 Msa1208340:CDS 30.0%
!! TTCTTTGGCTGATTTTGTTT+GGG + chr8_1:66379912-66379931 Msa1208340:CDS 30.0%
ATCATAATTAGAGGGAAGTT+TGG - chr8_1:66379941-66379960 None:intergenic 30.0%
! TTCTTCTTTTCCTTCTCATT+TGG + chr8_1:66379987-66380006 Msa1208340:CDS 30.0%
! TCTTCTTTTCCTTCTCATTT+GGG + chr8_1:66379988-66380007 Msa1208340:CDS 30.0%
TGTGAACTATGAAGTTCAAA+GGG + chr8_1:66380310-66380329 Msa1208340:intron 30.0%
AGCTAGAAATGATAGCTTAT+AGG + chr8_1:66380614-66380633 Msa1208340:intron 30.0%
GACAGCAAATATGTTATGTT+TGG - chr8_1:66380682-66380701 None:intergenic 30.0%
! TAACCAAAACTGATTCTAAG+AGG + chr8_1:66380715-66380734 Msa1208340:intron 30.0%
!!! ATCCATTTTTTCCCATGTTT+AGG + chr8_1:66380749-66380768 Msa1208340:intron 30.0%
AAAGCTAAGTATTTGACCTT+TGG - chr8_1:66380776-66380795 None:intergenic 30.0%
GAAGAGAAAGATATTGATGA+AGG + chr8_1:66380818-66380837 Msa1208340:intron 30.0%
!!! GAAACTAGACTTGCTAATTT+TGG - chr8_1:66380951-66380970 None:intergenic 30.0%
!!! TCATCGCAATGTTTTTTGAA+AGG + chr8_1:66381259-66381278 Msa1208340:CDS 30.0%
TTAACCTTTCTAAACTCACT+AGG - chr8_1:66381427-66381446 None:intergenic 30.0%
TTTGAACTACTCTTAACCTA+AGG + chr8_1:66381453-66381472 Msa1208340:exon 30.0%
CTATGCATGTATCAAAGATT+AGG + chr8_1:66381495-66381514 Msa1208340:three_prime_UTR 30.0%
! AGAGAATCGAGTTTTCAATA+GGG + chr8_1:66381523-66381542 Msa1208340:three_prime_UTR 30.0%
! GTTTTCAATAGGGTTCTTTT+AGG + chr8_1:66381533-66381552 Msa1208340:three_prime_UTR 30.0%
! AGAATTTTGTAGAATCCAAG+GGG + chr8_1:66381597-66381616 Msa1208340:three_prime_UTR 30.0%
CAGCTCAATTCAAACAACTT+GGG - chr8_1:66379726-66379745 None:intergenic 35.0%
TCAGCTCAATTCAAACAACT+TGG - chr8_1:66379727-66379746 None:intergenic 35.0%
GTTTGAATTGAGCTGAGTTA+AGG + chr8_1:66379731-66379750 Msa1208340:five_prime_UTR 35.0%
TTGAGCTGAGTTAAGGTTAA+TGG + chr8_1:66379738-66379757 Msa1208340:exon 35.0%
TGAGCTGAGTTAAGGTTAAT+GGG + chr8_1:66379739-66379758 Msa1208340:exon 35.0%
!!! GTTTTGGTGATGATGATGAT+TGG - chr8_1:66379786-66379805 None:intergenic 35.0%
TCATCACCAAAACCAAGTTT+AGG + chr8_1:66379793-66379812 Msa1208340:CDS 35.0%
TCTGGTAATTCTCCTAAACT+TGG - chr8_1:66379808-66379827 None:intergenic 35.0%
AAGCTGTGTAGCTGTTATAA+TGG + chr8_1:66379828-66379847 Msa1208340:CDS 35.0%
! GAAGCTAATTTGCAAATCTG+AGG - chr8_1:66379868-66379887 None:intergenic 35.0%
!! CTTCTTTGGCTGATTTTGTT+TGG + chr8_1:66379911-66379930 Msa1208340:CDS 35.0%
! CTTCTTTTCCTTCTCATTTG+GGG + chr8_1:66379989-66380008 Msa1208340:CDS 35.0%
AGCTTCAATACTTTCGATGA+AGG + chr8_1:66380039-66380058 Msa1208340:CDS 35.0%
! TGTTTGTCTATATCGGCTAA+AGG + chr8_1:66380180-66380199 Msa1208340:CDS 35.0%
! GTTTGTCTATATCGGCTAAA+GGG + chr8_1:66380181-66380200 Msa1208340:CDS 35.0%
CTAAAGGGTTGTCAATAACT+GGG + chr8_1:66380196-66380215 Msa1208340:CDS 35.0%
! GGATTGATGATCGAAGATAT+TGG + chr8_1:66380217-66380236 Msa1208340:CDS 35.0%
TTGATTCTTCAGTGGGAATA+TGG - chr8_1:66380245-66380264 None:intergenic 35.0%
ATATTCCCACTGAAGAATCA+AGG + chr8_1:66380244-66380263 Msa1208340:CDS 35.0%
TCTTACCTTGATTCTTCAGT+GGG - chr8_1:66380252-66380271 None:intergenic 35.0%
ATCTTACCTTGATTCTTCAG+TGG - chr8_1:66380253-66380272 None:intergenic 35.0%
GTGTGAACTATGAAGTTCAA+AGG + chr8_1:66380309-66380328 Msa1208340:intron 35.0%
GTGAACTATGAAGTTCAAAG+GGG + chr8_1:66380311-66380330 Msa1208340:intron 35.0%
!!! GTTCTAGTGTATTTTGGTCT+TGG + chr8_1:66380374-66380393 Msa1208340:intron 35.0%
!! TTTGGTCTTGGAAATTCTGT+TGG + chr8_1:66380386-66380405 Msa1208340:intron 35.0%
! GAAATTCTGTTGGCGATTTT+CGG + chr8_1:66380396-66380415 Msa1208340:intron 35.0%
! AAATTCTGTTGGCGATTTTC+GGG + chr8_1:66380397-66380416 Msa1208340:intron 35.0%
GACCTAAACATGGGAAAAAA+TGG - chr8_1:66380754-66380773 None:intergenic 35.0%
TATATGTTCCTGCTGGAAAT+GGG - chr8_1:66381105-66381124 None:intergenic 35.0%
AATAAGCTATATGTTCCTGC+TGG - chr8_1:66381112-66381131 None:intergenic 35.0%
!!! CAATGTTTTTTGAAAGGTCC+AGG + chr8_1:66381265-66381284 Msa1208340:CDS 35.0%
!! TTTTGAAAGGTCCAGGTAAA+TGG + chr8_1:66381272-66381291 Msa1208340:CDS 35.0%
ATTGATTGCACACACACTAA+AGG + chr8_1:66381370-66381389 Msa1208340:CDS 35.0%
GTATCCTAGTGAGTTTAGAA+AGG + chr8_1:66381420-66381439 Msa1208340:CDS 35.0%
! CAGAGAATCGAGTTTTCAAT+AGG + chr8_1:66381522-66381541 Msa1208340:three_prime_UTR 35.0%
! GAATTTTGTAGAATCCAAGG+GGG + chr8_1:66381598-66381617 Msa1208340:three_prime_UTR 35.0%
! AATTTTGTAGAATCCAAGGG+GGG + chr8_1:66381599-66381618 Msa1208340:three_prime_UTR 35.0%
CAGCTCAATTCAAACAACTT+GGG - chr8_1:66379726-66379745 None:intergenic 35.0%
TCAGCTCAATTCAAACAACT+TGG - chr8_1:66379727-66379746 None:intergenic 35.0%
GTTTGAATTGAGCTGAGTTA+AGG + chr8_1:66379731-66379750 Msa1208340:five_prime_UTR 35.0%
TTGAGCTGAGTTAAGGTTAA+TGG + chr8_1:66379738-66379757 Msa1208340:exon 35.0%
TGAGCTGAGTTAAGGTTAAT+GGG + chr8_1:66379739-66379758 Msa1208340:exon 35.0%
!!! GTTTTGGTGATGATGATGAT+TGG - chr8_1:66379786-66379805 None:intergenic 35.0%
TCATCACCAAAACCAAGTTT+AGG + chr8_1:66379793-66379812 Msa1208340:CDS 35.0%
TCTGGTAATTCTCCTAAACT+TGG - chr8_1:66379808-66379827 None:intergenic 35.0%
AAGCTGTGTAGCTGTTATAA+TGG + chr8_1:66379828-66379847 Msa1208340:CDS 35.0%
! GAAGCTAATTTGCAAATCTG+AGG - chr8_1:66379868-66379887 None:intergenic 35.0%
!! CTTCTTTGGCTGATTTTGTT+TGG + chr8_1:66379911-66379930 Msa1208340:CDS 35.0%
! CTTCTTTTCCTTCTCATTTG+GGG + chr8_1:66379989-66380008 Msa1208340:CDS 35.0%
AGCTTCAATACTTTCGATGA+AGG + chr8_1:66380039-66380058 Msa1208340:CDS 35.0%
! TGTTTGTCTATATCGGCTAA+AGG + chr8_1:66380180-66380199 Msa1208340:CDS 35.0%
! GTTTGTCTATATCGGCTAAA+GGG + chr8_1:66380181-66380200 Msa1208340:CDS 35.0%
CTAAAGGGTTGTCAATAACT+GGG + chr8_1:66380196-66380215 Msa1208340:CDS 35.0%
! GGATTGATGATCGAAGATAT+TGG + chr8_1:66380217-66380236 Msa1208340:CDS 35.0%
TTGATTCTTCAGTGGGAATA+TGG - chr8_1:66380245-66380264 None:intergenic 35.0%
ATATTCCCACTGAAGAATCA+AGG + chr8_1:66380244-66380263 Msa1208340:CDS 35.0%
TCTTACCTTGATTCTTCAGT+GGG - chr8_1:66380252-66380271 None:intergenic 35.0%
ATCTTACCTTGATTCTTCAG+TGG - chr8_1:66380253-66380272 None:intergenic 35.0%
GTGTGAACTATGAAGTTCAA+AGG + chr8_1:66380309-66380328 Msa1208340:intron 35.0%
GTGAACTATGAAGTTCAAAG+GGG + chr8_1:66380311-66380330 Msa1208340:intron 35.0%
!!! GTTCTAGTGTATTTTGGTCT+TGG + chr8_1:66380374-66380393 Msa1208340:intron 35.0%
!! TTTGGTCTTGGAAATTCTGT+TGG + chr8_1:66380386-66380405 Msa1208340:intron 35.0%
! GAAATTCTGTTGGCGATTTT+CGG + chr8_1:66380396-66380415 Msa1208340:intron 35.0%
! AAATTCTGTTGGCGATTTTC+GGG + chr8_1:66380397-66380416 Msa1208340:intron 35.0%
GACCTAAACATGGGAAAAAA+TGG - chr8_1:66380754-66380773 None:intergenic 35.0%
TATATGTTCCTGCTGGAAAT+GGG - chr8_1:66381105-66381124 None:intergenic 35.0%
AATAAGCTATATGTTCCTGC+TGG - chr8_1:66381112-66381131 None:intergenic 35.0%
!!! CAATGTTTTTTGAAAGGTCC+AGG + chr8_1:66381265-66381284 Msa1208340:CDS 35.0%
!! TTTTGAAAGGTCCAGGTAAA+TGG + chr8_1:66381272-66381291 Msa1208340:CDS 35.0%
ATTGATTGCACACACACTAA+AGG + chr8_1:66381370-66381389 Msa1208340:CDS 35.0%
GTATCCTAGTGAGTTTAGAA+AGG + chr8_1:66381420-66381439 Msa1208340:CDS 35.0%
! CAGAGAATCGAGTTTTCAAT+AGG + chr8_1:66381522-66381541 Msa1208340:three_prime_UTR 35.0%
! GAATTTTGTAGAATCCAAGG+GGG + chr8_1:66381598-66381617 Msa1208340:three_prime_UTR 35.0%
! AATTTTGTAGAATCCAAGGG+GGG + chr8_1:66381599-66381618 Msa1208340:three_prime_UTR 35.0%
ATAACAGCTACACAGCTTTC+TGG - chr8_1:66379826-66379845 None:intergenic 40.0%
! GCTAATTTGCAAATCTGAGG+AGG - chr8_1:66379865-66379884 None:intergenic 40.0%
!! AAGAAGCACCATGAAAAGCA+CGG - chr8_1:66379897-66379916 None:intergenic 40.0%
! TGCTTTTCATGGTGCTTCTT+TGG + chr8_1:66379897-66379916 Msa1208340:CDS 40.0%
CTTCTCATTTGGGGAAAAGA+GGG + chr8_1:66379998-66380017 Msa1208340:CDS 40.0%
TACTTTCGATGAAGGAACCA+AGG + chr8_1:66380047-66380066 Msa1208340:CDS 40.0%
AGTTTGGTTGGATAGAAGCA+TGG + chr8_1:66380149-66380168 Msa1208340:CDS 40.0%
! GTTTGGTTGGATAGAAGCAT+GGG + chr8_1:66380150-66380169 Msa1208340:CDS 40.0%
GCTAAAGGGTTGTCAATAAC+TGG + chr8_1:66380195-66380214 Msa1208340:CDS 40.0%
!! GCTAGAATCATTTCTGAGGT+TGG + chr8_1:66380653-66380672 Msa1208340:intron 40.0%
! GGACCTCTTAGAATCAGTTT+TGG - chr8_1:66380721-66380740 None:intergenic 40.0%
! ACTGATTCTAAGAGGTCCAA+AGG + chr8_1:66380723-66380742 Msa1208340:intron 40.0%
GGAAAAAATGGATCCACCTT+TGG - chr8_1:66380742-66380761 None:intergenic 40.0%
TTTCCCATGTTTAGGTCCAA+AGG + chr8_1:66380757-66380776 Msa1208340:intron 40.0%
TGACCTTTGGACCTAAACAT+GGG - chr8_1:66380763-66380782 None:intergenic 40.0%
TTGACCTTTGGACCTAAACA+TGG - chr8_1:66380764-66380783 None:intergenic 40.0%
TTGCGTATCTCCAACAAATC+TGG + chr8_1:66381050-66381069 Msa1208340:CDS 40.0%
CTTCAAACCACCAGATTTGT+TGG - chr8_1:66381063-66381082 None:intergenic 40.0%
ACAAATCTGGTGGTTTGAAG+TGG + chr8_1:66381063-66381082 Msa1208340:CDS 40.0%
CTATATGTTCCTGCTGGAAA+TGG - chr8_1:66381106-66381125 None:intergenic 40.0%
CGGGTTTCCCTAAATGTATT+CGG - chr8_1:66381138-66381157 None:intergenic 40.0%
AACCCTTCTTCCAAATCTCT+TGG - chr8_1:66381161-66381180 None:intergenic 40.0%
TGCAACACAGAACATGTTCA+TGG + chr8_1:66381181-66381200 Msa1208340:CDS 40.0%
ACACAGAACATGTTCATGGT+TGG + chr8_1:66381185-66381204 Msa1208340:CDS 40.0%
CACAGAACATGTTCATGGTT+GGG + chr8_1:66381186-66381205 Msa1208340:CDS 40.0%
AGCCTGTTAGATTCCAACTA+TGG + chr8_1:66381215-66381234 Msa1208340:CDS 40.0%
GTCCATAGTTGGAATCTAAC+AGG - chr8_1:66381220-66381239 None:intergenic 40.0%
! GATCATCTGAAGTCCATAGT+TGG - chr8_1:66381231-66381250 None:intergenic 40.0%
ATCTTCAACCACAAAATCGC+CGG - chr8_1:66381311-66381330 None:intergenic 40.0%
! ATTTTGTAGAATCCAAGGGG+GGG + chr8_1:66381600-66381619 Msa1208340:three_prime_UTR 40.0%
ATAACAGCTACACAGCTTTC+TGG - chr8_1:66379826-66379845 None:intergenic 40.0%
! GCTAATTTGCAAATCTGAGG+AGG - chr8_1:66379865-66379884 None:intergenic 40.0%
!! AAGAAGCACCATGAAAAGCA+CGG - chr8_1:66379897-66379916 None:intergenic 40.0%
! TGCTTTTCATGGTGCTTCTT+TGG + chr8_1:66379897-66379916 Msa1208340:CDS 40.0%
CTTCTCATTTGGGGAAAAGA+GGG + chr8_1:66379998-66380017 Msa1208340:CDS 40.0%
TACTTTCGATGAAGGAACCA+AGG + chr8_1:66380047-66380066 Msa1208340:CDS 40.0%
AGTTTGGTTGGATAGAAGCA+TGG + chr8_1:66380149-66380168 Msa1208340:CDS 40.0%
! GTTTGGTTGGATAGAAGCAT+GGG + chr8_1:66380150-66380169 Msa1208340:CDS 40.0%
GCTAAAGGGTTGTCAATAAC+TGG + chr8_1:66380195-66380214 Msa1208340:CDS 40.0%
!! GCTAGAATCATTTCTGAGGT+TGG + chr8_1:66380653-66380672 Msa1208340:intron 40.0%
! GGACCTCTTAGAATCAGTTT+TGG - chr8_1:66380721-66380740 None:intergenic 40.0%
! ACTGATTCTAAGAGGTCCAA+AGG + chr8_1:66380723-66380742 Msa1208340:intron 40.0%
GGAAAAAATGGATCCACCTT+TGG - chr8_1:66380742-66380761 None:intergenic 40.0%
TTTCCCATGTTTAGGTCCAA+AGG + chr8_1:66380757-66380776 Msa1208340:intron 40.0%
TGACCTTTGGACCTAAACAT+GGG - chr8_1:66380763-66380782 None:intergenic 40.0%
TTGACCTTTGGACCTAAACA+TGG - chr8_1:66380764-66380783 None:intergenic 40.0%
TTGCGTATCTCCAACAAATC+TGG + chr8_1:66381050-66381069 Msa1208340:CDS 40.0%
CTTCAAACCACCAGATTTGT+TGG - chr8_1:66381063-66381082 None:intergenic 40.0%
ACAAATCTGGTGGTTTGAAG+TGG + chr8_1:66381063-66381082 Msa1208340:CDS 40.0%
CTATATGTTCCTGCTGGAAA+TGG - chr8_1:66381106-66381125 None:intergenic 40.0%
CGGGTTTCCCTAAATGTATT+CGG - chr8_1:66381138-66381157 None:intergenic 40.0%
AACCCTTCTTCCAAATCTCT+TGG - chr8_1:66381161-66381180 None:intergenic 40.0%
TGCAACACAGAACATGTTCA+TGG + chr8_1:66381181-66381200 Msa1208340:CDS 40.0%
ACACAGAACATGTTCATGGT+TGG + chr8_1:66381185-66381204 Msa1208340:CDS 40.0%
CACAGAACATGTTCATGGTT+GGG + chr8_1:66381186-66381205 Msa1208340:CDS 40.0%
AGCCTGTTAGATTCCAACTA+TGG + chr8_1:66381215-66381234 Msa1208340:CDS 40.0%
GTCCATAGTTGGAATCTAAC+AGG - chr8_1:66381220-66381239 None:intergenic 40.0%
! GATCATCTGAAGTCCATAGT+TGG - chr8_1:66381231-66381250 None:intergenic 40.0%
ATCTTCAACCACAAAATCGC+CGG - chr8_1:66381311-66381330 None:intergenic 40.0%
! ATTTTGTAGAATCCAAGGGG+GGG + chr8_1:66381600-66381619 Msa1208340:three_prime_UTR 40.0%
! TCTCTCAACCGTGCTTTTCA+TGG + chr8_1:66379886-66379905 Msa1208340:CDS 45.0%
! CCTCTTTTCCCCAAATGAGA+AGG - chr8_1:66380000-66380019 None:intergenic 45.0%
CCTTCTCATTTGGGGAAAAG+AGG + chr8_1:66379997-66380016 Msa1208340:CDS 45.0%
TGGGGCTAGAATCATTTCTG+AGG + chr8_1:66380649-66380668 Msa1208340:intron 45.0%
! GATTCTAAGAGGTCCAAAGG+TGG + chr8_1:66380726-66380745 Msa1208340:intron 45.0%
CGTATCTCCAACAAATCTGG+TGG + chr8_1:66381053-66381072 Msa1208340:CDS 45.0%
! ATCTGGTGGTTTGAAGTGGA+CGG + chr8_1:66381067-66381086 Msa1208340:CDS 45.0%
ATTGAGTTCCCATTTCCAGC+AGG + chr8_1:66381094-66381113 Msa1208340:CDS 45.0%
CTTCTTCCAAATCTCTTGGC+GGG - chr8_1:66381157-66381176 None:intergenic 45.0%
CCTTCTTCCAAATCTCTTGG+CGG - chr8_1:66381158-66381177 None:intergenic 45.0%
CGCCAAGAGATTTGGAAGAA+GGG + chr8_1:66381156-66381175 Msa1208340:CDS 45.0%
TGGTAATAGCGCCATTTACC+TGG - chr8_1:66381286-66381305 None:intergenic 45.0%
AAATGGCGCTATTACCATGC+CGG + chr8_1:66381289-66381308 Msa1208340:CDS 45.0%
! GGCGATTTTGTGGTTGAAGA+TGG + chr8_1:66381310-66381329 Msa1208340:CDS 45.0%
GATTGCACACACACTAAAGG+TGG + chr8_1:66381373-66381392 Msa1208340:CDS 45.0%
ACATATATACATCCCCCCCT+TGG - chr8_1:66381615-66381634 None:intergenic 45.0%
! TCTCTCAACCGTGCTTTTCA+TGG + chr8_1:66379886-66379905 Msa1208340:CDS 45.0%
! CCTCTTTTCCCCAAATGAGA+AGG - chr8_1:66380000-66380019 None:intergenic 45.0%
CCTTCTCATTTGGGGAAAAG+AGG + chr8_1:66379997-66380016 Msa1208340:CDS 45.0%
TGGGGCTAGAATCATTTCTG+AGG + chr8_1:66380649-66380668 Msa1208340:intron 45.0%
! GATTCTAAGAGGTCCAAAGG+TGG + chr8_1:66380726-66380745 Msa1208340:intron 45.0%
CGTATCTCCAACAAATCTGG+TGG + chr8_1:66381053-66381072 Msa1208340:CDS 45.0%
! ATCTGGTGGTTTGAAGTGGA+CGG + chr8_1:66381067-66381086 Msa1208340:CDS 45.0%
ATTGAGTTCCCATTTCCAGC+AGG + chr8_1:66381094-66381113 Msa1208340:CDS 45.0%
CTTCTTCCAAATCTCTTGGC+GGG - chr8_1:66381157-66381176 None:intergenic 45.0%
CCTTCTTCCAAATCTCTTGG+CGG - chr8_1:66381158-66381177 None:intergenic 45.0%
CGCCAAGAGATTTGGAAGAA+GGG + chr8_1:66381156-66381175 Msa1208340:CDS 45.0%
TGGTAATAGCGCCATTTACC+TGG - chr8_1:66381286-66381305 None:intergenic 45.0%
AAATGGCGCTATTACCATGC+CGG + chr8_1:66381289-66381308 Msa1208340:CDS 45.0%
! GGCGATTTTGTGGTTGAAGA+TGG + chr8_1:66381310-66381329 Msa1208340:CDS 45.0%
GATTGCACACACACTAAAGG+TGG + chr8_1:66381373-66381392 Msa1208340:CDS 45.0%
ACATATATACATCCCCCCCT+TGG - chr8_1:66381615-66381634 None:intergenic 45.0%
!! TTCAAAAAAAAAAAAAAAAT+AGG + chr8_1:66381560-66381579 Msa1208340:three_prime_UTR 5.0%
!! TCAAAAAAAAAAAAAAAATA+GGG + chr8_1:66381561-66381580 Msa1208340:three_prime_UTR 5.0%
!! TTCAAAAAAAAAAAAAAAAT+AGG + chr8_1:66381560-66381579 Msa1208340:three_prime_UTR 5.0%
!! TCAAAAAAAAAAAAAAAATA+GGG + chr8_1:66381561-66381580 Msa1208340:three_prime_UTR 5.0%
!!! GTTGGCGATTTTCGGGTTTG+CGG + chr8_1:66380404-66380423 Msa1208340:intron 50.0%
TAACTTGGCGTCATGATCCC+CGG - chr8_1:66380914-66380933 None:intergenic 50.0%
CCGCCAAGAGATTTGGAAGA+AGG + chr8_1:66381155-66381174 Msa1208340:CDS 50.0%
! TTACCATGCCGGCGATTTTG+TGG + chr8_1:66381300-66381319 Msa1208340:CDS 50.0%
!!! GTTGGCGATTTTCGGGTTTG+CGG + chr8_1:66380404-66380423 Msa1208340:intron 50.0%
TAACTTGGCGTCATGATCCC+CGG - chr8_1:66380914-66380933 None:intergenic 50.0%
CCGCCAAGAGATTTGGAAGA+AGG + chr8_1:66381155-66381174 Msa1208340:CDS 50.0%
! TTACCATGCCGGCGATTTTG+TGG + chr8_1:66381300-66381319 Msa1208340:CDS 50.0%
TCCGAAAGCGAACGTGACAG+CGG - chr8_1:66379579-66379598 None:intergenic 55.0%
TGTCGCAACTGGGATCGCAA+TGG - chr8_1:66380884-66380903 None:intergenic 55.0%
CGGTACTAGCTGTCGCAACT+GGG - chr8_1:66380894-66380913 None:intergenic 55.0%
CCAGTTGCGACAGCTAGTAC+CGG + chr8_1:66380892-66380911 Msa1208340:intron 55.0%
CAGTTGCGACAGCTAGTACC+GGG + chr8_1:66380893-66380912 Msa1208340:intron 55.0%
AGTTGCGACAGCTAGTACCG+GGG + chr8_1:66380894-66380913 Msa1208340:intron 55.0%
GGGAAACCCGCCAAGAGATT+TGG + chr8_1:66381148-66381167 Msa1208340:CDS 55.0%
CAACCACAAAATCGCCGGCA+TGG - chr8_1:66381306-66381325 None:intergenic 55.0%
ACGTGACAGCGGGATATGAC+CGG - chr8_1:66379568-66379587 None:intergenic 55.0%
TCCGAAAGCGAACGTGACAG+CGG - chr8_1:66379579-66379598 None:intergenic 55.0%
TGTCGCAACTGGGATCGCAA+TGG - chr8_1:66380884-66380903 None:intergenic 55.0%
CGGTACTAGCTGTCGCAACT+GGG - chr8_1:66380894-66380913 None:intergenic 55.0%
CCAGTTGCGACAGCTAGTAC+CGG + chr8_1:66380892-66380911 Msa1208340:intron 55.0%
CAGTTGCGACAGCTAGTACC+GGG + chr8_1:66380893-66380912 Msa1208340:intron 55.0%
AGTTGCGACAGCTAGTACCG+GGG + chr8_1:66380894-66380913 Msa1208340:intron 55.0%
GGGAAACCCGCCAAGAGATT+TGG + chr8_1:66381148-66381167 Msa1208340:CDS 55.0%
CAACCACAAAATCGCCGGCA+TGG - chr8_1:66381306-66381325 None:intergenic 55.0%
CCGAAAGCGAACGTGACAGC+GGG - chr8_1:66379578-66379597 None:intergenic 60.0%
CCCGCTGTCACGTTCGCTTT+CGG + chr8_1:66379575-66379594 Msa1208340:five_prime_UTR 60.0%
GCTGTCACGTTCGCTTTCGG+AGG + chr8_1:66379578-66379597 Msa1208340:five_prime_UTR 60.0%
CCGGTACTAGCTGTCGCAAC+TGG - chr8_1:66380895-66380914 None:intergenic 60.0%
CCGAAAGCGAACGTGACAGC+GGG - chr8_1:66379578-66379597 None:intergenic 60.0%
CCCGCTGTCACGTTCGCTTT+CGG + chr8_1:66379575-66379594 Msa1208340:five_prime_UTR 60.0%
GCTGTCACGTTCGCTTTCGG+AGG + chr8_1:66379578-66379597 Msa1208340:five_prime_UTR 60.0%
CCGGTACTAGCTGTCGCAAC+TGG - chr8_1:66380895-66380914 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66379568 66381721 66379568 ID=Msa1208340;Name=Msa1208340
chr8_1 mRNA 66379568 66381721 66379568 ID=Msa1208340-mRNA-1;Parent=Msa1208340;Name=Msa1208340-mRNA-1;_AED=0.20;_eAED=0.20;_QI=189|1|1|1|1|1|3|253|286
chr8_1 exon 66379568 66380068 66379568 ID=Msa1208340-mRNA-1:exon:21798;Parent=Msa1208340-mRNA-1
chr8_1 exon 66380147 66380265 66380147 ID=Msa1208340-mRNA-1:exon:21799;Parent=Msa1208340-mRNA-1
chr8_1 exon 66381039 66381721 66381039 ID=Msa1208340-mRNA-1:exon:21800;Parent=Msa1208340-mRNA-1
chr8_1 five_prime_UTR 66379568 66379756 66379568 ID=Msa1208340-mRNA-1:five_prime_utr;Parent=Msa1208340-mRNA-1
chr8_1 CDS 66379757 66380068 66379757 ID=Msa1208340-mRNA-1:cds;Parent=Msa1208340-mRNA-1
chr8_1 CDS 66380147 66380265 66380147 ID=Msa1208340-mRNA-1:cds;Parent=Msa1208340-mRNA-1
chr8_1 CDS 66381039 66381468 66381039 ID=Msa1208340-mRNA-1:cds;Parent=Msa1208340-mRNA-1
chr8_1 three_prime_UTR 66381469 66381721 66381469 ID=Msa1208340-mRNA-1:three_prime_utr;Parent=Msa1208340-mRNA-1
Gene Sequence

>Msa1208340

ATGGGTATCTTGTTCTCAGTTTCATCCCAATCATCATCATCACCAAAACCAAGTTTAGGAGAATTACCAGAAAGCTGTGTAGCTGTTATAATGGAATACTTGGATCCTCCTCAGATTTGCAAATTAGCTTCTCTCAACCGTGCTTTTCATGGTGCTTCTTTGGCTGATTTTGTTTGGGAATCCAAACTTCCCTCTAATTATGATGTTATAATTCAAAAAATCTTTGATGGTTCTTCTTTTCCTTCTCATTTGGGGAAAAGAGGGATTTATTCAAGACTTTGTAGCTTCAATACTTTCGATGAAGGAACCAAGAAAGTTTGGTTGGATAGAAGCATGGGTAAAGTGTGTTTGTCTATATCGGCTAAAGGGTTGTCAATAACTGGGATTGATGATCGAAGATATTGGAACCATATTCCCACTGAAGAATCAAGATTCAATAATGTTGCGTATCTCCAACAAATCTGGTGGTTTGAAGTGGACGGTGAAATTGAGTTCCCATTTCCAGCAGGAACATATAGCTTATTCTTCCGAATACATTTAGGGAAACCCGCCAAGAGATTTGGAAGAAGGGTTTGCAACACAGAACATGTTCATGGTTGGGATGTAAAGCCTGTTAGATTCCAACTATGGACTTCAGATGATCAATATGATTCATCGCAATGTTTTTTGAAAGGTCCAGGTAAATGGCGCTATTACCATGCCGGCGATTTTGTGGTTGAAGATGGTAATGTATCAACAAAAGTAAAATTCTCTCTGACTCAAATTGATTGCACACACACTAAAGGTGGTCTCTGTTTAGATTCTGTGTTTGTGTATCCTAGTGAGTTTAGAAAGGTTAAAGAATTTTTGAACTACTCTTAA

Protein sequence

>Msa1208340

MGILFSVSSQSSSSPKPSLGELPESCVAVIMEYLDPPQICKLASLNRAFHGASLADFVWESKLPSNYDVIIQKIFDGSSFPSHLGKRGIYSRLCSFNTFDEGTKKVWLDRSMGKVCLSISAKGLSITGIDDRRYWNHIPTEESRFNNVAYLQQIWWFEVDGEIEFPFPAGTYSLFFRIHLGKPAKRFGRRVCNTEHVHGWDVKPVRFQLWTSDDQYDSSQCFLKGPGKWRYYHAGDFVVEDGNVSTKVKFSLTQIDCTHTKGGLCLDSVFVYPSEFRKVKEFLNYS*