AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008460 MtrunA17_Chr7g0218831 89.931 437 44 0 1 437 1 437 0.0 819
Msa1008460 MtrunA17_Chr7g0218841 87.900 438 52 1 1 437 1 438 0.0 799
Msa1008460 MtrunA17_Chr7g0218811 70.091 438 129 2 1 437 11 447 0.0 644
Msa1008460 MtrunA17_Chr7g0218821 67.035 452 136 3 1 440 1 451 0.0 636
Msa1008460 MtrunA17_Chr7g0218791 56.180 445 183 5 5 440 4 445 0.0 517
Msa1008460 MtrunA17_Chr3g0078841 32.553 470 275 10 5 436 9 474 2.13e-76 246
Msa1008460 MtrunA17_Chr7g0217881 33.047 466 268 11 5 439 9 461 1.99e-73 238
Msa1008460 MtrunA17_Chr6g0454341 32.000 475 271 12 5 436 9 474 3.82e-73 238
Msa1008460 MtrunA17_Chr5g0448551 32.168 429 269 11 5 419 6 426 3.93e-73 237
Msa1008460 MtrunA17_Chr8g0336331 31.290 473 274 10 6 436 10 473 1.68e-72 236
Msa1008460 MtrunA17_Chr6g0454401 32.075 477 277 13 5 439 9 480 3.51e-72 235
Msa1008460 MtrunA17_Chr6g0454181 30.882 476 283 12 5 439 9 479 3.21e-70 230
Msa1008460 MtrunA17_Chr6g0454261 30.233 473 284 9 5 436 9 476 4.35e-70 229
Msa1008460 MtrunA17_Chr6g0454141 30.642 483 275 12 5 439 9 479 1.04e-69 228
Msa1008460 MtrunA17_Chr6g0453961 32.225 481 271 13 5 439 18 489 1.09e-69 229
Msa1008460 MtrunA17_Chr6g0454191 31.656 477 279 15 5 439 9 480 1.68e-69 228
Msa1008460 MtrunA17_Chr2g0278711 32.696 471 277 13 5 439 10 476 3.07e-69 227
Msa1008460 MtrunA17_Chr6g0454151 31.158 475 281 11 5 439 9 477 3.28e-69 227
Msa1008460 MtrunA17_Chr6g0454321 31.158 475 275 14 6 440 10 472 3.67e-69 231
Msa1008460 MtrunA17_Chr6g0453951 30.737 475 285 11 5 439 56 526 3.94e-69 228
Msa1008460 MtrunA17_Chr6g0454331 31.590 478 279 11 5 439 6 478 1.28e-68 226
Msa1008460 MtrunA17_Chr6g0454291 30.932 472 282 11 5 436 6 473 1.70e-68 225
Msa1008460 MtrunA17_Chr3g0118691 32.211 475 276 12 5 439 14 482 2.02e-68 225
Msa1008460 MtrunA17_Chr8g0359821 31.524 479 274 13 5 439 9 477 3.81e-68 224
Msa1008460 MtrunA17_Chr3g0118671 32.135 473 277 12 6 439 6 473 1.21e-67 223
Msa1008460 MtrunA17_Chr3g0118661 30.591 474 278 11 5 436 12 476 1.71e-67 223
Msa1008460 MtrunA17_Chr6g0454361 30.913 482 279 11 3 439 8 480 1.89e-67 223
Msa1008460 MtrunA17_Chr3g0118701 32.000 475 277 12 5 439 14 482 2.16e-67 223
Msa1008460 MtrunA17_Chr6g0454211 30.720 472 283 11 5 436 296 763 9.40e-67 227
Msa1008460 MtrunA17_Chr6g0454211 36.875 160 60 4 210 356 105 236 6.43e-24 104
Msa1008460 MtrunA17_Chr6g0454301 31.210 471 280 12 5 436 262 727 3.37e-66 225
Msa1008460 MtrunA17_Chr6g0454301 38.136 236 121 5 224 438 3 234 1.37e-43 162
Msa1008460 MtrunA17_Chr5g0426431 33.475 472 268 15 4 436 10 474 8.00e-66 218
Msa1008460 MtrunA17_Chr7g0249981 31.155 459 274 13 6 439 25 466 4.73e-65 216
Msa1008460 MtrunA17_Chr5g0423981 30.998 471 254 14 5 439 9 444 1.01e-64 214
Msa1008460 MtrunA17_Chr3g0092641 32.415 472 273 14 4 436 10 474 1.81e-64 214
Msa1008460 MtrunA17_Chr6g0454131 30.042 476 280 10 5 436 9 475 2.18e-64 214
Msa1008460 MtrunA17_Chr3g0118771 30.573 471 283 11 5 436 20 485 2.98e-64 214
Msa1008460 MtrunA17_Chr3g0118711 30.947 475 282 13 5 439 12 480 3.89e-64 214
Msa1008460 MtrunA17_Chr6g0454121 30.882 476 276 11 5 436 9 475 1.86e-63 212
Msa1008460 MtrunA17_Chr6g0464871 31.169 462 276 13 4 439 21 466 4.96e-63 211
Msa1008460 MtrunA17_Chr6g0454201 31.027 477 285 13 3 439 8 480 2.06e-62 209
Msa1008460 MtrunA17_Chr6g0464861 31.965 463 268 14 5 439 10 453 3.48e-62 208
Msa1008460 MtrunA17_Chr6g0452771 29.583 480 284 10 5 439 9 479 1.38e-61 207
Msa1008460 MtrunA17_Chr4g0053321 29.614 466 278 13 7 437 27 477 1.91e-59 202
Msa1008460 MtrunA17_Chr5g0412111 29.895 475 280 11 5 441 4 463 6.29e-59 200
Msa1008460 MtrunA17_Chr4g0050341 28.125 480 287 12 5 436 18 487 8.96e-59 200
Msa1008460 MtrunA17_Chr6g0464881 28.884 457 289 12 4 437 9 452 1.00e-58 199
Msa1008460 MtrunA17_Chr6g0464921 29.654 462 278 13 5 437 10 453 2.64e-58 198
Msa1008460 MtrunA17_Chr4g0053501 29.550 467 279 12 6 437 11 462 3.80e-58 198
Msa1008460 MtrunA17_Chr5g0414321 31.197 468 255 16 6 436 11 448 6.85e-58 197
Msa1008460 MtrunA17_Chr6g0464841 30.736 462 278 13 4 439 9 454 6.92e-58 197
Msa1008460 MtrunA17_Chr6g0454351 28.000 475 281 11 5 439 11 464 8.87e-58 197
Msa1008460 MtrunA17_Chr5g0414331 31.739 460 263 15 6 436 13 450 2.27e-57 196
Msa1008460 MtrunA17_Chr3g0118751 30.193 467 261 12 5 436 5 441 9.91e-57 193
Msa1008460 MtrunA17_Chr7g0250001 28.665 457 288 11 6 439 6 447 1.38e-56 193
Msa1008460 MtrunA17_Chr1g0207981 27.273 462 300 8 6 436 13 469 1.35e-55 191
Msa1008460 MtrunA17_Chr8g0380531 30.652 460 283 14 6 440 10 458 1.82e-55 190
Msa1008460 MtrunA17_Chr6g0454251 28.718 390 241 8 5 357 6 395 6.69e-55 187
Msa1008460 MtrunA17_Chr5g0412131 28.753 473 291 13 4 441 10 471 5.01e-54 187
Msa1008460 MtrunA17_Chr3g0112761 30.853 457 272 17 6 436 8 446 1.11e-53 186
Msa1008460 MtrunA17_Chr8g0377921 28.085 470 297 13 4 439 1 463 6.66e-52 181
Msa1008460 MtrunA17_Chr7g0249931 27.609 460 291 13 6 439 40 483 1.05e-51 181
Msa1008460 MtrunA17_Chr6g0454271 36.400 250 134 6 207 436 39 283 2.13e-51 175
Msa1008460 MtrunA17_Chr3g0098111 29.314 481 275 17 6 440 9 470 3.06e-51 179
Msa1008460 MtrunA17_Chr6g0454221 40.175 229 117 4 224 436 3 227 1.25e-50 173
Msa1008460 MtrunA17_Chr3g0121991 28.690 481 285 16 6 439 79 548 5.38e-50 178
Msa1008460 MtrunA17_Chr3g0112771 29.646 452 280 15 8 437 14 449 5.42e-50 176
Msa1008460 MtrunA17_Chr7g0243681 29.545 484 280 16 6 441 11 481 1.33e-49 176
Msa1008460 MtrunA17_Chr5g0412101 28.512 477 286 11 5 441 11 472 1.49e-49 175
Msa1008460 MtrunA17_Chr1g0161351 29.638 469 289 15 6 440 37 498 5.82e-49 174
Msa1008460 MtrunA17_Chr7g0232411 27.966 472 286 14 6 437 6 463 1.52e-47 169
Msa1008460 MtrunA17_Chr7g0243631 29.652 489 278 16 6 441 13 488 3.01e-47 169
Msa1008460 MtrunA17_Chr3g0122001 28.512 484 273 18 6 436 486 949 4.77e-47 173
Msa1008460 MtrunA17_Chr3g0122001 27.721 487 283 18 6 439 6 476 3.44e-43 162
Msa1008460 MtrunA17_Chr7g0232401 32.081 346 201 10 118 435 124 463 6.79e-47 168
Msa1008460 MtrunA17_Chr7g0232331 28.319 452 277 14 1 417 1 440 8.46e-47 167
Msa1008460 MtrunA17_Chr5g0431441 28.696 460 290 13 6 439 18 465 8.48e-47 167
Msa1008460 MtrunA17_Chr1g0207971 27.907 473 277 14 6 440 8 454 2.23e-46 166
Msa1008460 MtrunA17_Chr5g0401721 27.719 469 294 14 8 439 10 470 2.33e-46 166
Msa1008460 MtrunA17_Chr8g0377941 28.510 463 284 14 8 436 9 458 2.44e-46 166
Msa1008460 MtrunA17_Chr1g0207861 29.412 476 281 18 6 440 8 469 2.49e-46 166
Msa1008460 MtrunA17_Chr7g0275681 27.292 480 290 13 4 436 10 477 5.73e-46 166
Msa1008460 MtrunA17_Chr7g0243871 27.950 483 280 13 8 441 11 474 1.42e-45 164
Msa1008460 MtrunA17_Chr7g0243931 28.306 484 291 15 6 441 17 492 1.96e-45 164
Msa1008460 MtrunA17_Chr8g0365811 28.814 472 289 15 8 441 497 959 3.43e-45 168
Msa1008460 MtrunA17_Chr8g0365811 29.861 432 251 16 6 396 9 429 1.29e-42 160
Msa1008460 MtrunA17_Chr6g0462521 31.742 356 202 13 97 428 101 439 3.60e-45 163
Msa1008460 MtrunA17_Chr4g0044521 27.778 468 282 15 11 438 14 465 3.70e-45 163
Msa1008460 MtrunA17_Chr7g0232391 27.872 470 289 13 6 437 6 463 4.10e-45 163
Msa1008460 MtrunA17_Chr8g0347281 28.233 464 282 15 5 432 17 465 9.56e-45 162
Msa1008460 MtrunA17_Chr6g0459311 28.145 469 278 13 9 435 16 467 9.95e-45 162
Msa1008460 MtrunA17_Chr8g0336651 29.175 473 276 15 6 434 781 1238 1.92e-44 166
Msa1008460 MtrunA17_Chr8g0336651 28.025 471 261 14 6 435 6 439 1.34e-39 152
Msa1008460 MtrunA17_Chr8g0336651 33.594 256 142 6 191 435 532 770 3.95e-36 142
Msa1008460 MtrunA17_Chr4g0060511 27.935 494 283 16 6 441 11 489 2.66e-44 161
Msa1008460 MtrunA17_Chr1g0207951 28.908 467 281 15 8 439 658 1108 3.19e-44 165
Msa1008460 MtrunA17_Chr1g0207951 29.512 471 273 18 6 440 124 571 5.62e-44 165
Msa1008460 MtrunA17_Chr8g0347271 27.505 469 279 15 5 432 18 466 3.56e-44 160
Msa1008460 MtrunA17_Chr7g0249961 36.910 233 128 5 222 439 31 259 4.28e-44 155
Msa1008460 MtrunA17_Chr7g0243771 28.482 481 290 13 6 441 6 477 5.53e-44 160
Msa1008460 MtrunA17_Chr1g0207831 28.814 472 282 18 7 440 9 464 6.95e-44 160
Msa1008460 MtrunA17_Chr7g0275511 27.928 444 282 12 5 417 14 450 8.13e-44 160
Msa1008460 MtrunA17_Chr8g0335161 29.039 458 257 16 6 417 6 441 1.25e-43 159
Msa1008460 MtrunA17_Chr8g0334851 27.176 471 287 15 1 428 1 458 1.40e-43 159
Msa1008460 MtrunA17_Chr8g0336691 28.266 467 288 12 6 435 13 469 3.01e-43 162
Msa1008460 MtrunA17_Chr8g0336691 28.205 468 287 12 6 435 919 1375 8.87e-42 158
Msa1008460 MtrunA17_Chr8g0336691 28.289 456 274 14 6 435 480 908 6.34e-37 144
Msa1008460 MtrunA17_Chr7g0232341 26.991 452 283 11 1 417 1 440 6.81e-43 157
Msa1008460 MtrunA17_Chr4g0044511 28.717 491 271 22 6 441 40 506 8.16e-43 157
Msa1008460 MtrunA17_Chr6g0486251 28.632 475 262 14 9 432 9 457 1.30e-42 156
Msa1008460 MtrunA17_Chr6g0486201 28.632 475 262 14 9 432 9 457 1.30e-42 156
Msa1008460 MtrunA17_Chr6g0454171 36.364 242 116 6 210 436 88 306 1.31e-42 152
Msa1008460 MtrunA17_Chr7g0243951 28.660 485 287 16 6 441 11 485 3.29e-42 155
Msa1008460 MtrunA17_Chr7g0265141 27.968 497 269 19 6 436 9 482 3.82e-42 155
Msa1008460 MtrunA17_Chr4g0032331 29.070 430 262 15 6 410 8 419 4.03e-42 154
Msa1008460 MtrunA17_Chr6g0462541 29.891 368 215 10 97 435 106 459 1.16e-41 154
Msa1008460 MtrunA17_Chr7g0243801 28.151 476 290 13 10 441 11 478 1.24e-41 154
Msa1008460 MtrunA17_Chr6g0462531 28.085 470 281 18 9 435 5 460 1.57e-41 153
Msa1008460 MtrunA17_Chr3g0118721 37.681 207 118 4 240 439 87 289 1.95e-41 149
Msa1008460 MtrunA17_Chr6g0462571 26.013 469 289 15 9 435 5 457 2.49e-41 153
Msa1008460 MtrunA17_Chr7g0243781 28.986 483 274 18 10 441 13 477 3.26e-41 152
Msa1008460 MtrunA17_Chr8g0336741 28.043 460 278 13 6 430 13 454 3.54e-41 152
Msa1008460 MtrunA17_Chr8g0339441 33.119 311 161 11 165 435 122 425 3.56e-41 151
Msa1008460 MtrunA17_Chr6g0462551 29.235 366 222 11 97 435 105 460 3.61e-41 152
Msa1008460 MtrunA17_Chr6g0449931 27.957 465 287 16 6 432 6 460 5.34e-41 152
Msa1008460 MtrunA17_Chr1g0153451 28.412 447 271 11 6 417 6 438 5.75e-41 152
Msa1008460 MtrunA17_Chr7g0243861 27.479 484 295 13 6 441 14 489 1.63e-40 151
Msa1008460 MtrunA17_Chr8g0373301 28.779 344 214 10 118 435 124 462 2.83e-40 150
Msa1008460 MtrunA17_Chr7g0265041 26.694 487 293 14 4 436 9 485 2.96e-40 150
Msa1008460 MtrunA17_Chr8g0339461 31.714 350 203 11 118 435 122 467 3.95e-40 149
Msa1008460 MtrunA17_Chr5g0419761 28.741 421 238 13 6 381 9 412 5.19e-40 149
Msa1008460 MtrunA17_Chr5g0426401 35.745 235 137 5 211 436 78 307 5.82e-40 145
Msa1008460 MtrunA17_Chr8g0339451 31.429 350 204 11 118 435 114 459 6.19e-40 149
Msa1008460 MtrunA17_Chr7g0232311 26.327 471 295 13 5 437 5 461 8.63e-40 148
Msa1008460 MtrunA17_Chr7g0235051 28.118 473 257 16 6 432 11 446 1.16e-39 148
Msa1008460 MtrunA17_Chr1g0207931 35.652 230 131 7 228 440 269 498 1.31e-39 149
Msa1008460 MtrunA17_Chr5g0393591 26.190 462 278 13 3 440 14 436 1.35e-39 147
Msa1008460 MtrunA17_Chr3g0106231 26.316 475 268 15 3 436 15 448 2.84e-39 147
Msa1008460 MtrunA17_Chr8g0335141 26.793 474 291 15 5 437 8 466 2.14e-38 144
Msa1008460 MtrunA17_Chr7g0243851 26.722 479 263 15 6 441 11 444 3.17e-38 144
Msa1008460 MtrunA17_Chr8g0366391 28.106 491 278 20 6 441 9 479 3.27e-38 144
Msa1008460 MtrunA17_Chr8g0336731 28.763 372 217 10 90 430 119 473 3.72e-38 144
Msa1008460 MtrunA17_Chr7g0243761 27.975 479 269 16 6 441 11 456 7.79e-38 143
Msa1008460 MtrunA17_Chr8g0334861 29.091 440 260 15 6 408 6 430 8.43e-38 143
Msa1008460 MtrunA17_Chr5g0403641 33.452 281 144 10 176 421 209 481 1.20e-37 143
Msa1008460 MtrunA17_Chr8g0339631 30.508 354 209 12 118 440 122 469 5.23e-37 141
Msa1008460 MtrunA17_Chr2g0307961 24.301 465 302 11 5 433 12 462 7.27e-37 140
Msa1008460 MtrunA17_Chr7g0265151 25.510 490 288 19 6 436 9 480 7.45e-37 140
Msa1008460 MtrunA17_Chr8g0339601 41.624 197 94 7 229 405 99 294 1.56e-36 137
Msa1008460 MtrunA17_Chr4g0066281 26.471 476 287 13 7 440 13 467 4.83e-36 138
Msa1008460 MtrunA17_Chr7g0265051 25.153 489 292 16 6 436 9 481 5.77e-36 138
Msa1008460 MtrunA17_Chr4g0066201 29.211 469 279 18 10 440 22 475 6.02e-36 138
Msa1008460 MtrunA17_Chr5g0431361 26.452 465 292 16 6 441 12 455 8.52e-36 137
Msa1008460 MtrunA17_Chr5g0429711 27.957 465 284 17 6 436 11 458 1.19e-35 137
Msa1008460 MtrunA17_Chr8g0355011 27.143 350 199 9 106 436 46 358 1.96e-35 134
Msa1008460 MtrunA17_Chr5g0442491 24.167 480 300 14 10 439 9 474 5.32e-35 135
Msa1008460 MtrunA17_Chr4g0011051 25.458 491 291 19 6 436 9 484 9.84e-35 135
Msa1008460 MtrunA17_Chr4g0066221 27.347 490 280 17 6 440 13 481 1.01e-34 135
Msa1008460 MtrunA17_Chr4g0044481 27.970 404 228 14 6 379 27 397 1.20e-34 133
Msa1008460 MtrunA17_Chr7g0243711 32.013 303 164 11 173 441 24 318 1.24e-34 131
Msa1008460 MtrunA17_Chr1g0153461 35.437 206 114 5 249 435 3 208 1.65e-34 128
Msa1008460 MtrunA17_Chr5g0431371 25.597 461 298 14 6 441 10 450 1.97e-34 133
Msa1008460 MtrunA17_Chr6g0454371 37.427 171 97 3 272 436 1 167 2.46e-34 126
Msa1008460 MtrunA17_Chr4g0066131 26.240 484 279 16 10 440 17 475 2.48e-34 134
Msa1008460 MtrunA17_Chr8g0361371 24.051 474 298 15 9 436 10 467 2.98e-34 133
Msa1008460 MtrunA17_Chr5g0448521 23.729 472 305 14 10 439 9 467 3.04e-34 133
Msa1008460 MtrunA17_Chr8g0382021 25.319 470 290 13 11 439 39 488 3.25e-34 133
Msa1008460 MtrunA17_Chr2g0329111 24.431 483 303 15 8 439 8 479 3.56e-34 133
Msa1008460 MtrunA17_Chr1g0159551 23.593 462 299 11 11 439 19 459 3.99e-34 132
Msa1008460 MtrunA17_Chr4g0066171 27.027 481 273 17 10 440 25 477 4.38e-34 133
Msa1008460 MtrunA17_Chr4g0066261 26.230 488 289 18 6 440 13 482 4.70e-34 133
Msa1008460 MtrunA17_Chr5g0428081 27.733 494 272 19 6 440 13 480 5.98e-34 132
Msa1008460 MtrunA17_Chr5g0442541 24.895 474 295 15 10 439 9 465 8.53e-34 132
Msa1008460 MtrunA17_Chr5g0440421 25.657 495 298 18 5 439 9 493 8.81e-34 132
Msa1008460 MtrunA17_Chr5g0401851 25.000 488 298 17 8 441 12 485 1.06e-33 132
Msa1008460 MtrunA17_Chr5g0431421 25.597 461 290 14 6 437 10 446 1.39e-33 131
Msa1008460 MtrunA17_Chr5g0431401 25.108 462 299 13 6 441 10 450 1.75e-33 130
Msa1008460 MtrunA17_Chr7g0265101 32.432 222 129 6 234 436 264 483 2.03e-33 131
Msa1008460 MtrunA17_Chr4g0044501 26.271 472 298 15 6 436 10 472 4.26e-33 130
Msa1008460 MtrunA17_Chr8g0374901 26.230 488 281 15 9 440 15 479 6.77e-33 129
Msa1008460 MtrunA17_Chr6g0463891 25.963 493 286 18 8 441 14 486 7.18e-33 129
Msa1008460 MtrunA17_Chr1g0173121 28.674 279 163 5 190 439 191 462 7.52e-33 129
Msa1008460 MtrunA17_Chr4g0066151 25.979 485 279 16 10 440 22 480 1.59e-32 129
Msa1008460 MtrunA17_Chr8g0374931 25.988 481 299 16 6 440 13 482 1.76e-32 128
Msa1008460 MtrunA17_Chr8g0334831 23.333 480 303 15 9 436 9 475 1.93e-32 128
Msa1008460 MtrunA17_Chr4g0072771 25.926 459 301 15 6 441 25 467 2.15e-32 128
Msa1008460 MtrunA17_Chr3g0079731 33.191 235 134 7 224 436 244 477 7.00e-32 127
Msa1008460 MtrunA17_Chr5g0410941 25.000 488 291 17 6 440 25 490 8.36e-32 127
Msa1008460 MtrunA17_Chr5g0442601 22.737 475 319 12 8 439 406 875 1.10e-31 128
Msa1008460 MtrunA17_Chr5g0442601 33.918 171 90 5 228 376 166 335 1.25e-22 101
Msa1008460 MtrunA17_Chr5g0442561 22.979 470 316 14 10 439 9 472 1.11e-31 126
Msa1008460 MtrunA17_Chr7g0243911 35.450 189 106 4 245 417 17 205 1.11e-31 120
Msa1008460 MtrunA17_Chr5g0416741 23.859 482 308 14 8 441 15 485 1.64e-31 126
Msa1008460 MtrunA17_Chr7g0218311 33.937 221 122 6 244 440 264 484 2.10e-31 125
Msa1008460 MtrunA17_Chr8g0336261 40.426 141 76 3 272 408 1 137 4.96e-31 116
Msa1008460 MtrunA17_Chr3g0106251 28.920 287 168 6 172 439 24 293 6.15e-31 121
Msa1008460 MtrunA17_Chr7g0241781 27.465 426 265 18 6 417 9 404 7.68e-31 123
Msa1008460 MtrunA17_Chr5g0419771 31.513 238 134 6 229 437 273 510 1.07e-30 124
Msa1008460 MtrunA17_Chr8g0374971 33.641 217 119 5 249 440 265 481 1.14e-30 123
Msa1008460 MtrunA17_Chr4g0014061 24.160 476 295 15 9 436 12 469 1.17e-30 123
Msa1008460 MtrunA17_Chr8g0336251 25.311 482 288 16 6 440 7 463 1.18e-30 123
Msa1008460 MtrunA17_Chr5g0420801 25.577 477 289 19 6 440 7 459 1.21e-30 123
Msa1008460 MtrunA17_Chr5g0429681 25.424 472 296 15 7 439 45 499 1.34e-30 123
Msa1008460 MtrunA17_Chr6g0463861 25.105 478 291 17 6 436 13 470 2.11e-30 122
Msa1008460 MtrunA17_Chr7g0243611 33.491 212 119 5 197 388 71 280 2.98e-30 119
Msa1008460 MtrunA17_Chr8g0336321 25.311 482 288 16 6 440 7 463 3.05e-30 122
Msa1008460 MtrunA17_Chr2g0294931 34.419 215 117 6 250 440 268 482 3.47e-30 122
Msa1008460 MtrunA17_Chr5g0442581 23.368 475 312 13 10 439 9 476 5.60e-30 122
Msa1008460 MtrunA17_Chr5g0409591 34.896 192 104 5 236 408 263 452 8.78e-30 120
Msa1008460 MtrunA17_Chr4g0072761 31.818 220 139 5 226 441 242 454 8.88e-30 120
Msa1008460 MtrunA17_Chr2g0294921 24.845 483 302 14 6 440 162 631 1.17e-29 122
Msa1008460 MtrunA17_Chr2g0294941 30.924 249 142 7 209 434 123 364 1.52e-29 118
Msa1008460 MtrunA17_Chr7g0265111 30.962 239 134 6 229 436 274 512 1.64e-29 120
Msa1008460 MtrunA17_Chr8g0369341 24.468 470 313 14 6 440 7 469 2.11e-29 119
Msa1008460 MtrunA17_Chr8g0374941 33.486 218 118 8 249 440 1202 1418 2.95e-29 121
Msa1008460 MtrunA17_Chr8g0374941 35.000 180 94 6 249 406 264 442 4.95e-27 114
Msa1008460 MtrunA17_Chr8g0374941 26.205 477 276 18 9 435 479 929 6.06e-27 114
Msa1008460 MtrunA17_Chr8g0355221 24.694 490 295 20 8 441 17 488 4.27e-29 119
Msa1008460 MtrunA17_Chr5g0442521 23.218 491 292 18 10 439 9 475 6.54e-29 118
Msa1008460 MtrunA17_Chr1g0179901 31.416 226 132 4 234 437 267 491 8.30e-29 118
Msa1008460 MtrunA17_Chr7g0243811 27.913 412 236 16 18 392 1 388 1.17e-28 116
Msa1008460 MtrunA17_Chr5g0442511 23.444 482 282 18 8 440 51 494 2.70e-28 117
Msa1008460 MtrunA17_Chr5g0432731 28.519 270 169 6 188 439 33 296 3.87e-28 113
Msa1008460 MtrunA17_Chr4g0029131 25.653 421 281 15 6 406 12 420 6.80e-28 116
Msa1008460 MtrunA17_Chr7g0241801 25.659 417 262 16 6 406 9 393 9.02e-28 114
Msa1008460 MtrunA17_Chr8g0361411 24.289 457 306 14 6 436 8 450 9.69e-28 114
Msa1008460 MtrunA17_Chr8g0367221 25.764 458 299 17 6 432 12 459 1.19e-27 116
Msa1008460 MtrunA17_Chr8g0367221 26.477 457 298 17 6 432 1288 1736 7.61e-27 114
Msa1008460 MtrunA17_Chr8g0367221 25.653 421 262 16 6 390 798 1203 8.93e-26 110
Msa1008460 MtrunA17_Chr8g0350881 33.180 217 120 5 249 440 265 481 1.55e-27 114
Msa1008460 MtrunA17_Chr1g0165701 33.945 218 119 7 245 441 272 485 1.58e-27 114
Msa1008460 MtrunA17_Chr1g0196851 25.866 433 268 17 6 406 49 460 1.77e-27 114
Msa1008460 MtrunA17_Chr7g0232351 27.979 386 230 13 6 356 6 378 2.02e-27 112
Msa1008460 MtrunA17_Chr6g0463851 29.032 217 129 4 249 440 267 483 4.09e-27 113
Msa1008460 MtrunA17_Chr8g0370941 32.683 205 105 5 229 402 243 445 5.95e-27 113
Msa1008460 MtrunA17_Chr2g0302991 25.507 345 222 11 119 436 123 459 1.97e-26 111
Msa1008460 MtrunA17_Chr7g0250021 27.844 334 205 10 6 319 12 329 2.92e-26 108
Msa1008460 MtrunA17_Chr4g0029151 26.168 428 270 15 6 406 20 428 8.67e-26 109
Msa1008460 MtrunA17_Chr3g0079711 31.183 186 106 6 275 438 2 187 1.05e-24 100
Msa1008460 MtrunA17_Chr4g0040711 32.020 203 123 5 228 420 242 439 4.78e-24 103
Msa1008460 MtrunA17_Chr6g0454231 28.821 229 118 5 217 439 29 218 9.44e-24 103
Msa1008460 MtrunA17_Chr6g0454231 28.302 159 105 4 5 154 249 407 3.29e-14 74.3
Msa1008460 MtrunA17_Chr2g0302961 27.586 261 158 8 198 436 211 462 3.01e-23 101
Msa1008460 MtrunA17_Chr1g0207881 37.692 130 76 3 316 440 256 385 3.50e-23 100
Msa1008460 MtrunA17_Chr2g0283041 31.841 201 126 6 252 441 258 458 4.60e-23 101
Msa1008460 MtrunA17_Chr2g0278721 26.185 443 267 17 6 406 517 941 1.39e-22 100
Msa1008460 MtrunA17_Chr2g0278721 22.506 431 289 14 6 406 15 430 4.39e-18 87.0
Msa1008460 MtrunA17_Chr4g0040691 33.520 179 109 4 252 420 261 439 3.53e-22 98.6
Msa1008460 MtrunA17_Chr2g0319761 26.897 435 277 16 1 408 1 421 7.73e-22 97.4
Msa1008460 MtrunA17_Chr4g0069611 25.571 438 281 15 6 416 15 434 8.99e-22 97.4
Msa1008460 MtrunA17_Chr5g0431431 25.118 422 223 13 6 410 10 355 9.12e-22 96.3
Msa1008460 MtrunA17_Chr4g0042931 23.849 478 293 15 6 436 7 460 1.21e-21 97.1
Msa1008460 MtrunA17_Chr5g0427571 27.778 270 160 9 198 440 36 297 2.04e-21 94.4
Msa1008460 MtrunA17_Chr6g0453941 29.355 310 143 11 4 297 9 258 2.77e-21 93.2
Msa1008460 MtrunA17_Chr8g0357361 34.247 146 91 3 249 390 117 261 9.73e-21 91.7
Msa1008460 MtrunA17_Chr4g0042891 28.696 230 141 4 224 436 239 462 1.19e-20 94.0
Msa1008460 MtrunA17_Chr8g0337381 37.815 119 73 1 318 435 3 121 1.33e-20 87.4
Msa1008460 MtrunA17_Chr5g0416821 24.131 489 287 19 8 441 16 475 1.73e-20 93.6
Msa1008460 MtrunA17_Chr3g0092031 33.540 161 97 5 252 406 6 162 3.71e-20 88.2
Msa1008460 MtrunA17_Chr2g0278741 24.074 432 281 16 6 406 97 512 1.09e-19 91.7
Msa1008460 MtrunA17_Chr6g0466841 22.300 426 291 11 6 406 18 428 3.75e-19 89.7
Msa1008460 MtrunA17_Chr2g0319751 27.093 454 284 20 1 421 478 917 1.93e-18 88.2
Msa1008460 MtrunA17_Chr4g0039881 24.396 414 277 13 16 406 2 402 3.72e-18 86.3
Msa1008460 MtrunA17_Chr6g0453981 29.268 205 123 5 115 297 1 205 5.23e-18 82.8
Msa1008460 MtrunA17_Chr7g0231631 28.505 214 120 7 246 441 63 261 1.17e-17 82.8
Msa1008460 MtrunA17_Chr2g0319731 24.537 432 275 14 6 406 25 436 1.27e-17 85.1
Msa1008460 MtrunA17_Chr2g0319791 25.225 444 293 18 6 421 8 440 1.52e-17 84.7
Msa1008460 MtrunA17_Chr6g0466831 21.546 427 293 11 6 406 18 428 4.06e-17 83.2
Msa1008460 MtrunA17_Chr2g0302851 33.540 161 97 5 252 406 270 426 6.68e-17 82.8
Msa1008460 MtrunA17_Chr4g0066141 32.624 141 81 3 315 441 213 353 8.43e-17 81.6
Msa1008460 MtrunA17_Chr6g0464091 34.932 146 85 5 252 391 279 420 9.56e-17 82.4
Msa1008460 MtrunA17_Chr5g0426411 30.303 165 105 4 5 160 11 174 1.58e-16 77.4
Msa1008460 MtrunA17_Chr6g0454281 29.448 163 103 4 5 155 9 171 4.96e-16 76.6
Msa1008460 MtrunA17_Chr7g0243731 42.667 75 42 1 315 388 6 80 5.60e-16 72.8
Msa1008460 MtrunA17_Chr6g0482061 26.606 218 145 5 224 427 251 467 1.11e-15 79.0
Msa1008460 MtrunA17_Chr2g0319801 24.594 431 276 15 6 406 8 419 1.38e-15 78.6
Msa1008460 MtrunA17_Chr8g0336271 28.025 157 105 2 6 154 10 166 4.20e-15 75.5
Msa1008460 MtrunA17_Chr2g0321331 31.548 168 95 7 260 412 94 256 1.25e-13 70.9
Msa1008460 MtrunA17_Chr6g0454111 38.542 96 46 2 210 292 88 183 5.63e-12 64.3
Msa1008460 MtrunA17_Chr6g0454391 40.580 69 37 1 331 399 11 75 1.05e-11 62.0
Msa1008460 MtrunA17_Chr8g0334841 34.127 126 73 3 189 307 22 144 1.15e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008460 AT3G02100.1 40.175 458 245 8 5 441 12 461 5.52e-116 348
Msa1008460 AT1G05675.1 32.308 455 275 10 6 437 6 450 1.58e-73 238
Msa1008460 AT1G05680.1 31.498 454 280 9 6 437 6 450 3.98e-70 229
Msa1008460 AT1G22400.1 31.390 446 257 11 5 410 12 448 3.28e-65 217
Msa1008460 AT1G22360.1 31.556 450 260 11 6 416 10 450 2.10e-64 215
Msa1008460 AT1G22370.2 32.446 413 248 9 2 384 9 420 2.25e-64 215
Msa1008460 AT1G22380.1 31.390 446 256 12 5 410 12 447 3.81e-64 214
Msa1008460 AT3G46670.1 29.386 456 284 12 8 441 11 450 9.04e-64 213
Msa1008460 AT1G78270.1 30.839 441 265 10 5 410 12 447 3.71e-63 212
Msa1008460 AT3G22250.1 29.515 454 266 13 5 421 7 443 4.71e-62 208
Msa1008460 AT3G46660.1 29.167 456 287 12 8 441 16 457 6.84e-62 207
Msa1008460 AT1G22360.2 32.297 418 239 10 6 384 10 422 1.14e-61 207
Msa1008460 AT1G22340.1 29.663 445 266 12 5 410 12 448 6.57e-59 201
Msa1008460 AT5G59590.1 27.455 448 297 11 6 436 10 446 8.59e-59 199
Msa1008460 AT5G59580.1 28.817 465 286 14 1 440 4 448 1.00e-58 199
Msa1008460 AT2G31750.1 31.155 459 271 13 8 437 10 452 7.26e-58 197
Msa1008460 AT3G21560.1 28.421 475 291 13 5 441 11 474 1.14e-57 197
Msa1008460 AT2G31750.2 31.155 459 271 13 8 437 10 452 1.78e-57 197
Msa1008460 AT2G31790.1 28.665 457 295 9 6 439 8 456 2.40e-54 187
Msa1008460 AT3G55710.1 31.102 463 274 15 6 439 8 454 3.22e-54 187
Msa1008460 AT3G46720.1 28.285 449 294 11 6 441 9 442 2.49e-53 185
Msa1008460 AT3G46680.1 27.778 450 296 12 6 437 9 447 3.07e-53 184
Msa1008460 AT2G43840.2 27.623 467 280 13 6 440 7 447 8.26e-52 181
Msa1008460 AT4G15550.1 27.368 475 286 15 5 436 12 470 8.60e-52 181
Msa1008460 AT3G11340.1 30.128 468 263 17 5 439 8 444 1.06e-51 181
Msa1008460 AT2G43840.1 27.623 467 280 13 6 440 7 447 3.03e-51 179
Msa1008460 AT5G38010.1 27.766 461 283 13 6 436 10 450 3.04e-51 179
Msa1008460 AT3G55700.1 29.221 462 280 16 6 439 8 450 3.47e-51 179
Msa1008460 AT4G15500.1 28.908 467 284 16 4 436 7 459 7.43e-51 179
Msa1008460 AT3G46700.1 27.212 452 299 11 6 441 9 446 7.49e-51 178
Msa1008460 AT3G46690.1 27.617 449 296 12 6 436 9 446 3.11e-50 177
Msa1008460 AT2G15490.1 29.124 491 268 18 6 436 7 477 5.88e-50 177
Msa1008460 AT2G43820.1 28.228 457 292 11 6 441 7 448 7.13e-50 176
Msa1008460 AT2G15490.3 29.158 487 270 18 6 436 7 474 7.81e-50 176
Msa1008460 AT3G46650.1 27.640 445 281 14 6 435 10 428 8.22e-50 175
Msa1008460 AT5G05880.1 27.451 459 290 13 8 441 10 450 1.18e-49 175
Msa1008460 AT2G15480.1 28.395 486 275 17 6 436 10 477 2.03e-49 175
Msa1008460 AT5G38040.1 27.887 459 263 15 15 436 19 446 4.07e-49 174
Msa1008460 AT5G05900.1 28.448 464 274 14 8 439 10 447 6.16e-49 173
Msa1008460 AT4G15490.1 27.253 466 294 16 6 436 8 463 8.37e-48 171
Msa1008460 AT2G23250.1 27.991 443 283 12 15 437 7 433 8.93e-48 170
Msa1008460 AT5G05870.1 28.478 460 280 17 8 436 10 451 1.34e-47 170
Msa1008460 AT1G05560.1 27.015 459 294 14 5 436 4 448 2.41e-47 169
Msa1008460 AT2G15480.2 27.419 496 277 17 6 436 10 487 4.68e-47 169
Msa1008460 AT2G26480.1 25.166 453 301 11 8 439 10 445 4.92e-47 168
Msa1008460 AT5G05860.1 28.285 449 285 12 8 435 11 443 5.75e-47 168
Msa1008460 AT1G05560.2 27.511 458 293 14 5 436 54 498 5.91e-47 169
Msa1008460 AT4G15480.1 27.350 468 292 16 6 436 19 475 6.24e-47 169
Msa1008460 AT2G23260.1 25.442 452 307 8 6 437 10 451 6.33e-47 168
Msa1008460 AT2G36970.1 27.505 469 301 12 5 440 9 471 2.46e-46 167
Msa1008460 AT1G01420.1 29.556 450 271 13 2 417 4 441 5.23e-46 166
Msa1008460 AT4G14090.1 26.889 450 302 13 5 436 12 452 6.76e-46 165
Msa1008460 AT1G01420.2 29.556 450 271 13 2 417 7 444 6.84e-46 166
Msa1008460 AT4G01070.1 28.539 445 277 12 5 417 7 442 2.78e-45 164
Msa1008460 AT3G53160.1 27.621 496 270 18 6 436 8 479 1.71e-44 162
Msa1008460 AT4G34131.1 27.536 483 282 15 6 436 10 476 2.74e-44 161
Msa1008460 AT2G36800.1 28.099 484 276 19 6 432 12 480 3.50e-44 161
Msa1008460 AT5G05890.1 26.535 456 302 12 8 441 10 454 4.03e-44 160
Msa1008460 AT2G28080.1 28.078 463 281 19 10 436 22 468 2.99e-43 159
Msa1008460 AT1G05530.1 26.566 463 300 14 5 439 4 454 5.70e-43 157
Msa1008460 AT1G22370.1 37.069 232 122 5 172 384 24 250 8.13e-43 153
Msa1008460 AT2G36770.1 26.337 486 289 18 6 436 14 485 3.27e-42 156
Msa1008460 AT2G36780.1 26.875 480 286 15 6 432 14 481 6.44e-42 155
Msa1008460 AT4G34138.1 26.994 489 275 18 6 436 11 475 1.47e-41 154
Msa1008460 AT2G30140.1 27.056 462 286 14 6 439 13 451 2.18e-40 150
Msa1008460 AT2G36750.1 27.197 478 286 16 6 432 10 476 6.85e-40 149
Msa1008460 AT4G34135.1 25.826 484 290 15 6 436 11 478 9.66e-40 149
Msa1008460 AT3G16520.3 26.446 363 246 8 91 436 98 456 1.38e-39 148
Msa1008460 AT2G30150.2 26.856 458 287 15 6 436 13 449 3.55e-39 147
Msa1008460 AT2G30140.2 27.389 471 272 16 6 439 13 450 5.64e-39 146
Msa1008460 AT3G16520.2 26.901 342 229 8 91 415 98 435 1.20e-38 145
Msa1008460 AT5G26310.1 26.518 494 279 18 5 439 6 474 1.40e-38 145
Msa1008460 AT3G16520.1 26.901 342 229 8 91 415 98 435 1.61e-38 145
Msa1008460 AT5G66690.1 27.941 476 274 17 5 432 6 460 1.79e-38 145
Msa1008460 AT1G01390.1 27.696 473 286 16 5 436 7 464 2.09e-38 145
Msa1008460 AT1G01390.2 27.696 473 286 16 5 436 24 481 2.71e-38 145
Msa1008460 AT2G36760.1 26.392 485 282 17 6 432 14 481 2.87e-38 145
Msa1008460 AT2G16890.2 26.452 465 284 13 6 429 9 456 2.97e-38 145
Msa1008460 AT2G30150.1 26.872 454 284 15 10 436 1 433 3.63e-38 144
Msa1008460 AT2G36790.1 26.403 481 287 15 6 432 13 480 2.82e-37 142
Msa1008460 AT2G16890.3 26.559 433 263 12 6 400 9 424 3.57e-37 140
Msa1008460 AT1G24100.1 26.316 475 282 15 6 439 11 458 5.09e-37 141
Msa1008460 AT3G50740.1 27.010 485 277 16 5 434 6 468 1.30e-36 140
Msa1008460 AT2G29750.1 24.573 468 311 10 6 436 8 470 1.42e-36 140
Msa1008460 AT3G21790.1 23.480 477 320 9 6 439 4 478 1.87e-36 140
Msa1008460 AT3G21750.1 22.594 478 313 13 6 439 4 468 7.37e-35 135
Msa1008460 AT2G29740.1 26.316 475 295 15 6 436 8 471 7.39e-35 135
Msa1008460 AT1G07250.1 25.527 474 302 13 6 437 6 470 9.53e-35 135
Msa1008460 AT1G73880.1 26.652 469 293 12 6 439 14 466 2.54e-34 134
Msa1008460 AT5G14860.1 26.596 470 271 16 6 427 8 451 6.31e-34 133
Msa1008460 AT3G21800.1 21.414 481 319 11 7 439 6 475 1.66e-33 132
Msa1008460 AT5G49690.1 25.431 464 295 16 6 438 10 453 2.99e-33 130
Msa1008460 AT4G15260.1 24.225 355 228 9 119 439 7 354 3.44e-33 128
Msa1008460 AT5G17050.1 24.781 456 310 13 6 439 12 456 5.68e-33 130
Msa1008460 AT3G21760.1 24.324 481 313 11 6 439 4 480 6.93e-33 130
Msa1008460 AT3G53150.1 33.654 208 115 4 195 381 222 427 1.64e-32 129
Msa1008460 AT3G21780.1 23.467 473 315 12 6 439 4 468 1.74e-32 129
Msa1008460 AT2G29710.1 31.452 248 148 7 208 436 215 459 1.90e-31 125
Msa1008460 AT1G07260.1 24.043 470 311 12 6 436 6 468 2.44e-31 125
Msa1008460 AT2G29730.1 23.093 472 305 16 6 436 5 459 8.16e-31 124
Msa1008460 AT5G65550.1 24.942 433 282 14 6 408 9 428 1.30e-30 123
Msa1008460 AT4G15280.1 21.849 476 324 11 6 439 4 473 1.61e-30 123
Msa1008460 AT1G10400.1 24.895 474 294 15 6 437 7 460 1.89e-30 123
Msa1008460 AT4G15280.2 21.849 476 324 11 6 439 36 505 2.24e-30 123
Msa1008460 AT4G36770.1 28.416 461 255 20 6 417 4 438 4.26e-30 122
Msa1008460 AT2G18560.1 32.589 224 125 7 228 431 150 367 9.34e-30 119
Msa1008460 AT5G17040.2 29.091 220 147 4 225 439 122 337 4.49e-29 117
Msa1008460 AT1G30530.1 23.218 435 313 9 12 435 19 443 9.07e-29 118
Msa1008460 AT5G37950.1 25.989 354 233 10 21 356 1 343 9.37e-29 116
Msa1008460 AT2G18570.1 24.508 457 276 16 5 415 4 437 1.07e-28 118
Msa1008460 AT5G17040.1 29.091 220 147 4 225 439 224 439 1.39e-28 117
Msa1008460 AT5G12890.1 23.285 481 307 14 6 436 10 478 1.47e-28 117
Msa1008460 AT5G37950.2 25.989 354 227 10 21 356 1 337 6.52e-28 114
Msa1008460 AT5G17030.1 30.256 195 130 3 225 417 240 430 1.14e-27 115
Msa1008460 AT4G27570.1 26.415 424 266 14 6 405 7 408 3.70e-27 113
Msa1008460 AT5G54010.1 25.352 426 281 12 1 406 1 409 4.49e-27 113
Msa1008460 AT4G27560.1 25.234 428 274 15 2 405 3 408 2.50e-26 111
Msa1008460 AT5G53990.1 25.333 450 278 18 1 420 1 422 3.89e-26 110
Msa1008460 AT1G64910.1 26.233 446 281 20 1 421 1 423 4.28e-26 110
Msa1008460 AT1G51210.1 25.250 400 239 11 5 373 19 389 1.11e-25 108
Msa1008460 AT1G50580.1 25.482 467 293 16 1 440 1 439 2.39e-25 108
Msa1008460 AT5G03490.1 28.302 212 145 4 229 436 251 459 5.85e-25 107
Msa1008460 AT1G07240.1 21.895 475 318 14 7 436 6 472 1.50e-24 106
Msa1008460 AT1G64920.1 25.858 437 263 18 1 406 1 407 2.26e-24 105
Msa1008460 AT2G22590.1 23.982 442 303 15 2 417 11 445 1.02e-23 103
Msa1008460 AT2G22930.1 23.923 418 281 11 6 406 6 403 1.47e-23 102
Msa1008460 AT3G29630.1 26.608 451 302 16 1 436 1 437 2.30e-22 99.4
Msa1008460 AT1G06000.1 27.957 279 173 11 183 437 157 431 4.62e-22 98.6
Msa1008460 AT4G09500.1 29.609 179 116 4 252 420 219 397 2.76e-21 95.9
Msa1008460 AT3G29630.2 30.052 193 128 5 251 436 219 411 3.16e-21 95.9
Msa1008460 AT4G09500.2 29.609 179 116 4 252 420 244 422 3.43e-21 95.9
Msa1008460 AT4G01070.2 28.213 319 203 11 5 307 7 315 2.94e-19 89.0
Msa1008460 AT5G54060.1 25.293 427 270 19 8 402 15 424 7.93e-18 85.9
Msa1008460 AT4G34135.2 22.523 333 203 10 6 298 11 328 4.38e-13 70.5
Msa1008460 AT2G23210.1 23.860 285 172 11 6 265 10 274 1.22e-11 65.5

Find 106 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGAAGTGGGACACAATT+TGG 0.153736 7_1:-8870588 Msa1008460:CDS
GATTGTTGCTACATTTAATA+TGG 0.167038 7_1:-8870618 Msa1008460:CDS
CTAGGGCTAGTTCATTAAAT+TGG 0.232886 7_1:+8868913 None:intergenic
ACAACAAGAAAAGTTCATTT+TGG 0.257283 7_1:-8869031 Msa1008460:CDS
TGGTAGGAACTTTGGTGATA+TGG 0.260975 7_1:+8869076 None:intergenic
TAACACAACTAATAAACTTT+TGG 0.269673 7_1:+8868442 None:intergenic
AGAAACTGATCAACTGAAAA+TGG 0.274470 7_1:+8868663 None:intergenic
ATATGTTTCCTTTGGTAGTA+TGG 0.280834 7_1:-8868952 Msa1008460:CDS
ATATCACTTCTATCATCTTC+AGG 0.296209 7_1:+8870740 None:intergenic
GTGTCTATCATAGGTATATC+AGG 0.310349 7_1:+8869227 None:intergenic
TTACTTCCATGGAAATCATT+TGG 0.311022 7_1:+8868816 None:intergenic
GAGATACAAACTATAAAGTT+TGG 0.331675 7_1:-8869149 Msa1008460:CDS
ATTTAATATGGGTTGGGCTT+TGG 0.340556 7_1:-8870606 Msa1008460:CDS
TGCTACATTTAATATGGGTT+GGG 0.342148 7_1:-8870612 Msa1008460:CDS
AAATTTGTTGTGTCTATCAT+AGG 0.354442 7_1:+8869218 None:intergenic
ACCAACATGTACACCTTCTA+TGG 0.354994 7_1:+8868704 None:intergenic
CTAGTTCATTAAATTGGTTT+TGG 0.358155 7_1:+8868919 None:intergenic
AGTGACCTTGCAACCATGTT+TGG 0.359865 7_1:+8870856 None:intergenic
TTGGAAGTGGGACACAATTT+GGG 0.363607 7_1:-8870587 Msa1008460:CDS
AAGATACAACTTGCTTAGAT+TGG 0.363758 7_1:-8869004 Msa1008460:CDS
TTAACATCTTCTATAAGCTT+TGG 0.364725 7_1:+8870671 None:intergenic
TACTTCCATGGAAATCATTT+GGG 0.367161 7_1:+8868817 None:intergenic
ACATGTCCTTGAACTGGATA+TGG 0.367225 7_1:+8870911 None:intergenic
CCTACCAATTGGTCCATTGA+TGG 0.375277 7_1:-8869060 Msa1008460:CDS
GAAAATGGCCAACACAATAA+AGG 0.384419 7_1:+8868678 None:intergenic
TTGCTACATTTAATATGGGT+TGG 0.394148 7_1:-8870613 Msa1008460:CDS
AACCATAAACGATCGAAAAC+TGG 0.397250 7_1:-8870815 Msa1008460:CDS
TCTTCAGGCTCCAAACCATC+TGG 0.398364 7_1:+8870755 None:intergenic
TCGTCCTAGTAATGACAATA+AGG 0.399447 7_1:-8868853 Msa1008460:CDS
TAAAGGTAAAATTGTTGGTT+GGG 0.403052 7_1:-8868796 Msa1008460:CDS
GAATTAGAGAAAGATGATAA+TGG 0.405064 7_1:-8868600 Msa1008460:CDS
AGTTGGTGATGATGATATAA+AGG 0.407151 7_1:-8868535 Msa1008460:CDS
TCCAGCTTCTGCCACTACTT+TGG 0.407318 7_1:-8870543 Msa1008460:CDS
ATTTGTGATGTGTGGAAGAC+TGG 0.417376 7_1:-8868627 Msa1008460:CDS
ATCCCATCCTCAATAAGTTT+AGG 0.417721 7_1:+8870503 None:intergenic
CTTTGGTAGTATGGTAGTAA+TGG 0.420468 7_1:-8868943 Msa1008460:CDS
TCTGTCATATATGTTTCCTT+TGG 0.423583 7_1:-8868960 Msa1008460:CDS
TTGTTGTTACTTGCCATCAA+TGG 0.424395 7_1:+8869047 None:intergenic
GGTGACACTCCCAGATGGTT+TGG 0.431583 7_1:-8870765 Msa1008460:CDS
ATCTTATCTACGCCGCGCCA+TGG 0.433882 7_1:+8869194 None:intergenic
TGTCTAGAAGCTCAAGTCCT+AGG 0.436501 7_1:+8868895 None:intergenic
TATGGGTTGGGCTTTGGAAG+TGG 0.440483 7_1:-8870600 Msa1008460:CDS
GTTATACCATATCCAGTTCA+AGG 0.444945 7_1:-8870917 Msa1008460:CDS
GGAAGTAAAGGTAAAATTGT+TGG 0.450567 7_1:-8868801 Msa1008460:CDS
CTTGCCATCAATGGACCAAT+TGG 0.451649 7_1:+8869056 None:intergenic
GGGTTAACATGTCCTTGAAC+TGG 0.455156 7_1:+8870905 None:intergenic
GGATGGAATTCTACCATAGA+AGG 0.456157 7_1:-8868717 Msa1008460:CDS
AACTTGTGAGAATTGCATAA+GGG 0.457199 7_1:+8870883 None:intergenic
GGACCAATTGGTAGGAACTT+TGG 0.458930 7_1:+8869068 None:intergenic
TCACCAAAGTTCCTACCAAT+TGG 0.467404 7_1:-8869071 Msa1008460:CDS
GCCAAAGTAGTGGCAGAAGC+TGG 0.470607 7_1:+8870542 None:intergenic
AATGATTTCCATGGAAGTAA+AGG 0.480314 7_1:-8868813 Msa1008460:CDS
TTGGTGTACCTTTATTGTGT+TGG 0.480614 7_1:-8868686 Msa1008460:CDS
ATGTTGACAACAATATCAAA+TGG 0.484231 7_1:-8870640 Msa1008460:CDS
CACTTGTATCTTATCTTGCT+CGG 0.484843 7_1:+8870787 None:intergenic
TCTATAAGCTTTGGAAGTCT+AGG 0.486772 7_1:+8870680 None:intergenic
CTGCATACCTAAACTTATTG+AGG 0.492483 7_1:-8870510 Msa1008460:CDS
TTTACCTTATTGTCATTACT+AGG 0.497913 7_1:+8868849 None:intergenic
ATGGGTTGGGCTTTGGAAGT+GGG 0.498017 7_1:-8870599 Msa1008460:CDS
GTAAAGGTAAAATTGTTGGT+TGG 0.498069 7_1:-8868797 Msa1008460:CDS
GAACTTGTGAGAATTGCATA+AGG 0.502829 7_1:+8870882 None:intergenic
GGACACAATTTGGGAATCAA+AGG 0.510394 7_1:-8870578 Msa1008460:CDS
ATCATTAGTAATATAGAAGA+AGG 0.512008 7_1:-8868486 Msa1008460:CDS
GGACGAACAACCCAAAGAAA+AGG 0.516602 7_1:+8868870 None:intergenic
ATTGTTGCTACATTTAATAT+GGG 0.520303 7_1:-8870617 Msa1008460:CDS
ATACCTAAACTTATTGAGGA+TGG 0.526185 7_1:-8870506 Msa1008460:CDS
TACCTAAACTTATTGAGGAT+GGG 0.526302 7_1:-8870505 Msa1008460:CDS
GCATACCCAAATGATTTCCA+TGG 0.529645 7_1:-8868822 Msa1008460:CDS
AAGAAGGTGGATCAACTAGT+TGG 0.531619 7_1:-8868552 Msa1008460:CDS
GAAACATATATGACAGATTG+AGG 0.532322 7_1:+8868966 None:intergenic
GTCTAGAAGCTCAAGTCCTA+GGG 0.544665 7_1:+8868896 None:intergenic
GATGGGATTATTGATTCTGC+AGG 0.547238 7_1:-8870488 Msa1008460:intron
CTTCAGGCTCCAAACCATCT+GGG 0.548351 7_1:+8870756 None:intergenic
AAGGCAAGAGATAAAGAAGA+AGG 0.556338 7_1:-8868568 Msa1008460:CDS
GACACAATTTGGGAATCAAA+GGG 0.557360 7_1:-8870577 Msa1008460:CDS
ACCATAGAAGGTGTACATGT+TGG 0.563384 7_1:-8868705 Msa1008460:CDS
ACTGCTTATGATCTTGAGCC+TGG 0.563828 7_1:-8869107 Msa1008460:CDS
CTTATGAAGCACGCAATCGA+GGG 0.567191 7_1:+8868747 None:intergenic
TGTCTATCATAGGTATATCA+GGG 0.572365 7_1:+8869228 None:intergenic
GCTTCATAAGTCATTGTGGA+TGG 0.579325 7_1:-8868734 Msa1008460:CDS
CTTTGGAAGTCTAGGAGGCA+TGG 0.591674 7_1:+8870688 None:intergenic
CAATTTAATGAACTAGCCCT+AGG 0.592472 7_1:-8868912 Msa1008460:CDS
GACAGCACAAGCCAAAGTAG+TGG 0.593369 7_1:+8870532 None:intergenic
CATTACTACCATACTACCAA+AGG 0.593449 7_1:+8868944 None:intergenic
TATGGTATAACAAGAAAATG+TGG 0.598798 7_1:+8870929 None:intergenic
AATCGTATATTTGTGATGTG+TGG 0.599221 7_1:-8868635 Msa1008460:CDS
GCAAGAGATAAAGAAGAAGG+TGG 0.602358 7_1:-8868565 Msa1008460:CDS
ATAAGCTTTGGAAGTCTAGG+AGG 0.602780 7_1:+8870683 None:intergenic
CCATCAATGGACCAATTGGT+AGG 0.610498 7_1:+8869060 None:intergenic
ACTTGTGAGAATTGCATAAG+GGG 0.611094 7_1:+8870884 None:intergenic
TCACAAGTTCTAGCCAAACA+TGG 0.613083 7_1:-8870869 Msa1008460:CDS
TCTAGCCAAACATGGTTGCA+AGG 0.620565 7_1:-8870861 Msa1008460:CDS
AAACTATAAAGTTTGGAGAA+CGG 0.621516 7_1:-8869142 Msa1008460:CDS
ACTTATGAAGCACGCAATCG+AGG 0.622424 7_1:+8868746 None:intergenic
TGAAGCACGCAATCGAGGGA+TGG 0.623504 7_1:+8868751 None:intergenic
GGTGATATGGAAAATACACC+AGG 0.626519 7_1:+8869089 None:intergenic
CGAGCAAGATAAGATACAAG+TGG 0.628733 7_1:-8870786 Msa1008460:CDS
CTATAAAGTTTGGAGAACGG+TGG 0.661197 7_1:-8869139 Msa1008460:CDS
CTTGTGAGAATTGCATAAGG+GGG 0.662045 7_1:+8870885 None:intergenic
ATTAGTAATATAGAAGAAGG+TGG 0.662213 7_1:-8868483 Msa1008460:CDS
CAAGTGGTGACACTCCCAGA+TGG 0.666396 7_1:-8870770 Msa1008460:CDS
ACACAATTTGGGAATCAAAG+GGG 0.672957 7_1:-8870576 Msa1008460:CDS
GCGTGCTTCATAAGTCATTG+TGG 0.674264 7_1:-8868738 Msa1008460:CDS
ACAACAAATTTCCCATGGCG+CGG 0.675013 7_1:-8869206 Msa1008460:CDS
GTCTATCATAGGTATATCAG+GGG 0.680090 7_1:+8869229 None:intergenic
TAGACACAACAAATTTCCCA+TGG 0.689856 7_1:-8869211 Msa1008460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCACAAATAATTTTTT+TGG - chr7_1:8868938-8868957 Msa1008460:CDS 10.0%
!!! ATTTTACTTTATTTTAGTAT+TGG - chr7_1:8869057-8869076 Msa1008460:CDS 10.0%
!!! TTGTTCAATAAATAAAATTT+TGG - chr7_1:8869359-8869378 Msa1008460:intron 10.0%
!!! TGTTCAATAAATAAAATTTT+GGG - chr7_1:8869360-8869379 Msa1008460:intron 10.0%
!! CATTTCATATTTCATAAATA+AGG + chr7_1:8869034-8869053 None:intergenic 15.0%
!! AAACAGAAAATTACTAAAAT+TGG - chr7_1:8869837-8869856 Msa1008460:intron 15.0%
!! AACAGAAAATTACTAAAATT+GGG - chr7_1:8869838-8869857 Msa1008460:intron 15.0%
!! AAATACTATAGAAAATACTA+TGG - chr7_1:8869870-8869889 Msa1008460:intron 15.0%
!! TAAACACAAATCATAAATAA+TGG + chr7_1:8870001-8870020 None:intergenic 15.0%
!! ATTGTTGCTACATTTAATAT+GGG - chr7_1:8868758-8868777 Msa1008460:CDS 20.0%
!!! TTTCCAATACTTTTTTTTGA+GGG + chr7_1:8869093-8869112 None:intergenic 20.0%
!!! TTTTCCAATACTTTTTTTTG+AGG + chr7_1:8869094-8869113 None:intergenic 20.0%
!!! AGTATATTTGTAGTTTTGAT+AGG - chr7_1:8869576-8869595 Msa1008460:intron 20.0%
!! AATGAATAAAAGTTTCTCTT+AGG - chr7_1:8869746-8869765 Msa1008460:intron 20.0%
!!! TTGTTTCAGTTTGTTATTTT+CGG + chr7_1:8869818-8869837 None:intergenic 20.0%
!! AACTACAACTATTGTTTAAT+AGG - chr7_1:8869937-8869956 Msa1008460:intron 20.0%
!!! GATTTGAATTTCTTGTTTTT+TGG + chr7_1:8870125-8870144 None:intergenic 20.0%
!!! ATGATAATGGTTTTATATCA+AGG - chr7_1:8870788-8870807 Msa1008460:CDS 20.0%
!! ATCATTAGTAATATAGAAGA+AGG - chr7_1:8870889-8870908 Msa1008460:CDS 20.0%
!!! TAACACAACTAATAAACTTT+TGG + chr7_1:8870936-8870955 None:intergenic 20.0%
! TATGGTATAACAAGAAAATG+TGG + chr7_1:8868449-8868468 None:intergenic 25.0%
! TTAACATCTTCTATAAGCTT+TGG + chr7_1:8868707-8868726 None:intergenic 25.0%
! ATGTTGACAACAATATCAAA+TGG - chr7_1:8868735-8868754 Msa1008460:CDS 25.0%
! GATTGTTGCTACATTTAATA+TGG - chr7_1:8868757-8868776 Msa1008460:CDS 25.0%
!! TTTGGAATAGAATTCCATAA+AGG - chr7_1:8868956-8868975 Msa1008460:CDS 25.0%
! TGAACAATAAACTACCTTTA+TGG + chr7_1:8868973-8868992 None:intergenic 25.0%
!! TTTCCCTCAAAAAAAAGTAT+TGG - chr7_1:8869087-8869106 Msa1008460:CDS 25.0%
!!! CATTCTGCTTTTTTTTTTTG+TGG + chr7_1:8869339-8869358 None:intergenic 25.0%
!! ATATACTTTTGAACCAGAAT+GGG + chr7_1:8869563-8869582 None:intergenic 25.0%
!! AATATACTTTTGAACCAGAA+TGG + chr7_1:8869564-8869583 None:intergenic 25.0%
!! TAGAGAGTTTTCTTAATTTC+TGG + chr7_1:8869715-8869734 None:intergenic 25.0%
! TATATTACTTGAGTGAATGA+AGG + chr7_1:8869912-8869931 None:intergenic 25.0%
!!! TGAATTTCTTGTTTTTTGGT+GGG + chr7_1:8870121-8870140 None:intergenic 25.0%
!!! TTGAATTTCTTGTTTTTTGG+TGG + chr7_1:8870122-8870141 None:intergenic 25.0%
!!! AAATTTGTTGTGTCTATCAT+AGG + chr7_1:8870160-8870179 None:intergenic 25.0%
! GAGATACAAACTATAAAGTT+TGG - chr7_1:8870226-8870245 Msa1008460:intron 25.0%
! AAACTATAAAGTTTGGAGAA+CGG - chr7_1:8870233-8870252 Msa1008460:intron 25.0%
!! ACAACAAGAAAAGTTCATTT+TGG - chr7_1:8870344-8870363 Msa1008460:intron 25.0%
!!! CTAGTTCATTAAATTGGTTT+TGG + chr7_1:8870459-8870478 None:intergenic 25.0%
! TTTACCTTATTGTCATTACT+AGG + chr7_1:8870529-8870548 None:intergenic 25.0%
!! TAAAGGTAAAATTGTTGGTT+GGG - chr7_1:8870579-8870598 Msa1008460:CDS 25.0%
! GAATTAGAGAAAGATGATAA+TGG - chr7_1:8870775-8870794 Msa1008460:CDS 25.0%
! ATTAGTAATATAGAAGAAGG+TGG - chr7_1:8870892-8870911 Msa1008460:CDS 25.0%
AACTTGTGAGAATTGCATAA+GGG + chr7_1:8868495-8868514 None:intergenic 30.0%
ATATCACTTCTATCATCTTC+AGG + chr7_1:8868638-8868657 None:intergenic 30.0%
TTGCTACATTTAATATGGGT+TGG - chr7_1:8868762-8868781 Msa1008460:CDS 30.0%
TGCTACATTTAATATGGGTT+GGG - chr7_1:8868763-8868782 Msa1008460:CDS 30.0%
ATACCTAAACTTATTGAGGA+TGG - chr7_1:8868869-8868888 Msa1008460:CDS 30.0%
TACCTAAACTTATTGAGGAT+GGG - chr7_1:8868870-8868889 Msa1008460:CDS 30.0%
ATGTAACAACATTCTGCTTT+AGG + chr7_1:8869231-8869250 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - chr7_1:8869291-8869310 Msa1008460:intron 30.0%
!!! TTTTTTTTTTTGTGGTGTCC+GGG + chr7_1:8869331-8869350 None:intergenic 30.0%
!!! CTTTTTTTTTTTGTGGTGTC+CGG + chr7_1:8869332-8869351 None:intergenic 30.0%
!! ATTTTGGGAATCAGATCAAA+TGG - chr7_1:8869375-8869394 Msa1008460:intron 30.0%
ATGATTGATAGACATAGAAG+AGG - chr7_1:8869498-8869517 Msa1008460:intron 30.0%
TGATTGATAGACATAGAAGA+GGG - chr7_1:8869499-8869518 Msa1008460:intron 30.0%
! TATACTTTTGAACCAGAATG+GGG + chr7_1:8869562-8869581 None:intergenic 30.0%
ACTATATATATTGACGCAGT+CGG - chr7_1:8869602-8869621 Msa1008460:intron 30.0%
!! AGAGTTTTCTTAATTTCTGG+TGG + chr7_1:8869712-8869731 None:intergenic 30.0%
!!! TTGTTATTTTCGGTCCATTA+GGG + chr7_1:8869808-8869827 None:intergenic 30.0%
!!! TTTGTTATTTTCGGTCCATT+AGG + chr7_1:8869809-8869828 None:intergenic 30.0%
TGTCTATCATAGGTATATCA+GGG + chr7_1:8870150-8870169 None:intergenic 30.0%
! AAGATACAACTTGCTTAGAT+TGG - chr7_1:8870371-8870390 Msa1008460:intron 30.0%
GAAACATATATGACAGATTG+AGG + chr7_1:8870412-8870431 None:intergenic 30.0%
TCTGTCATATATGTTTCCTT+TGG - chr7_1:8870415-8870434 Msa1008460:intron 30.0%
! ATATGTTTCCTTTGGTAGTA+TGG - chr7_1:8870423-8870442 Msa1008460:intron 30.0%
TACTTCCATGGAAATCATTT+GGG + chr7_1:8870561-8870580 None:intergenic 30.0%
TTACTTCCATGGAAATCATT+TGG + chr7_1:8870562-8870581 None:intergenic 30.0%
AATGATTTCCATGGAAGTAA+AGG - chr7_1:8870562-8870581 Msa1008460:CDS 30.0%
! CAATTTTACCTTTACTTCCA+TGG + chr7_1:8870573-8870592 None:intergenic 30.0%
GGAAGTAAAGGTAAAATTGT+TGG - chr7_1:8870574-8870593 Msa1008460:CDS 30.0%
GTAAAGGTAAAATTGTTGGT+TGG - chr7_1:8870578-8870597 Msa1008460:CDS 30.0%
! TGGTTCAAGATTTTACTTTG+TGG + chr7_1:8870607-8870626 None:intergenic 30.0%
AGAAACTGATCAACTGAAAA+TGG + chr7_1:8870715-8870734 None:intergenic 30.0%
AATCGTATATTTGTGATGTG+TGG - chr7_1:8870740-8870759 Msa1008460:CDS 30.0%
!! AGTTGGTGATGATGATATAA+AGG - chr7_1:8870840-8870859 Msa1008460:CDS 30.0%
GTTATACCATATCCAGTTCA+AGG - chr7_1:8868458-8868477 Msa1008460:CDS 35.0%
ACTTGTGAGAATTGCATAAG+GGG + chr7_1:8868494-8868513 None:intergenic 35.0%
GAACTTGTGAGAATTGCATA+AGG + chr7_1:8868496-8868515 None:intergenic 35.0%
AACCATAAACGATCGAAAAC+TGG - chr7_1:8868560-8868579 Msa1008460:CDS 35.0%
CACTTGTATCTTATCTTGCT+CGG + chr7_1:8868591-8868610 None:intergenic 35.0%
!! TCTATAAGCTTTGGAAGTCT+AGG + chr7_1:8868698-8868717 None:intergenic 35.0%
!! ATTTAATATGGGTTGGGCTT+TGG - chr7_1:8868769-8868788 Msa1008460:CDS 35.0%
GACACAATTTGGGAATCAAA+GGG - chr7_1:8868798-8868817 Msa1008460:CDS 35.0%
ACACAATTTGGGAATCAAAG+GGG - chr7_1:8868799-8868818 Msa1008460:CDS 35.0%
CTGCATACCTAAACTTATTG+AGG - chr7_1:8868865-8868884 Msa1008460:CDS 35.0%
ATCCCATCCTCAATAAGTTT+AGG + chr7_1:8868875-8868894 None:intergenic 35.0%
!! AACATTCTGCTTTAGGATTG+AGG + chr7_1:8869224-8869243 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr7_1:8869676-8869695 Msa1008460:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr7_1:8869677-8869696 Msa1008460:intron 35.0%
AACTTGTGAAAATAGGGTTC+CGG - chr7_1:8869683-8869702 Msa1008460:intron 35.0%
!! TCTTAATTTCTGGTGGATTC+CGG + chr7_1:8869705-8869724 None:intergenic 35.0%
TGCAACTCTTAAGCTTAAAC+AGG - chr7_1:8869770-8869789 Msa1008460:intron 35.0%
GCAACTCTTAAGCTTAAACA+GGG - chr7_1:8869771-8869790 Msa1008460:intron 35.0%
GGGAAATAACAAAACCCTAA+TGG - chr7_1:8869791-8869810 Msa1008460:intron 35.0%
TGAGTGAATGAAGGTTTACA+AGG + chr7_1:8869903-8869922 None:intergenic 35.0%
GTCTATCATAGGTATATCAG+GGG + chr7_1:8870149-8870168 None:intergenic 35.0%
GTGTCTATCATAGGTATATC+AGG + chr7_1:8870151-8870170 None:intergenic 35.0%
TAGACACAACAAATTTCCCA+TGG - chr7_1:8870164-8870183 Msa1008460:intron 35.0%
! TTGTTGTTACTTGCCATCAA+TGG + chr7_1:8870331-8870350 None:intergenic 35.0%
CATTACTACCATACTACCAA+AGG + chr7_1:8870434-8870453 None:intergenic 35.0%
! CTTTGGTAGTATGGTAGTAA+TGG - chr7_1:8870432-8870451 Msa1008460:intron 35.0%
!! CTAGGGCTAGTTCATTAAAT+TGG + chr7_1:8870465-8870484 None:intergenic 35.0%
CAATTTAATGAACTAGCCCT+AGG - chr7_1:8870463-8870482 Msa1008460:intron 35.0%
! TTCTAGACAAGCCTTTTCTT+TGG - chr7_1:8870494-8870513 Msa1008460:CDS 35.0%
! TCTAGACAAGCCTTTTCTTT+GGG - chr7_1:8870495-8870514 Msa1008460:CDS 35.0%
TCGTCCTAGTAATGACAATA+AGG - chr7_1:8870522-8870541 Msa1008460:CDS 35.0%
TTGGTGTACCTTTATTGTGT+TGG - chr7_1:8870689-8870708 Msa1008460:CDS 35.0%
GAAAATGGCCAACACAATAA+AGG + chr7_1:8870700-8870719 None:intergenic 35.0%
AAGGCAAGAGATAAAGAAGA+AGG - chr7_1:8870807-8870826 Msa1008460:CDS 35.0%
ACATGTCCTTGAACTGGATA+TGG + chr7_1:8868467-8868486 None:intergenic 40.0%
CTTGTGAGAATTGCATAAGG+GGG + chr7_1:8868493-8868512 None:intergenic 40.0%
! TCACAAGTTCTAGCCAAACA+TGG - chr7_1:8868506-8868525 Msa1008460:CDS 40.0%
! CACCAGTTTTCGATCGTTTA+TGG + chr7_1:8868565-8868584 None:intergenic 40.0%
CGAGCAAGATAAGATACAAG+TGG - chr7_1:8868589-8868608 Msa1008460:CDS 40.0%
!! ATAAGCTTTGGAAGTCTAGG+AGG + chr7_1:8868695-8868714 None:intergenic 40.0%
TTTGGAAGTGGGACACAATT+TGG - chr7_1:8868787-8868806 Msa1008460:CDS 40.0%
TTGGAAGTGGGACACAATTT+GGG - chr7_1:8868788-8868807 Msa1008460:CDS 40.0%
GGACACAATTTGGGAATCAA+AGG - chr7_1:8868797-8868816 Msa1008460:CDS 40.0%
!! GATGGGATTATTGATTCTGC+AGG - chr7_1:8868887-8868906 Msa1008460:CDS 40.0%
CATAATATATGCAAGGTCCG+AGG - chr7_1:8869298-8869317 Msa1008460:intron 40.0%
TGATAGACATAGAAGAGGGA+AGG - chr7_1:8869503-8869522 Msa1008460:intron 40.0%
GATAGACATAGAAGAGGGAA+GGG - chr7_1:8869504-8869523 Msa1008460:intron 40.0%
ATAGACATAGAAGAGGGAAG+GGG - chr7_1:8869505-8869524 Msa1008460:intron 40.0%
CTATAAAGTTTGGAGAACGG+TGG - chr7_1:8870236-8870255 Msa1008460:intron 40.0%
GGTGATATGGAAAATACACC+AGG + chr7_1:8870289-8870308 None:intergenic 40.0%
! TGGTAGGAACTTTGGTGATA+TGG + chr7_1:8870302-8870321 None:intergenic 40.0%
TCACCAAAGTTCCTACCAAT+TGG - chr7_1:8870304-8870323 Msa1008460:intron 40.0%
GCATACCCAAATGATTTCCA+TGG - chr7_1:8870553-8870572 Msa1008460:CDS 40.0%
GCTTCATAAGTCATTGTGGA+TGG - chr7_1:8870641-8870660 Msa1008460:CDS 40.0%
GGATGGAATTCTACCATAGA+AGG - chr7_1:8870658-8870677 Msa1008460:CDS 40.0%
! ACCATAGAAGGTGTACATGT+TGG - chr7_1:8870670-8870689 Msa1008460:CDS 40.0%
ACCAACATGTACACCTTCTA+TGG + chr7_1:8870674-8870693 None:intergenic 40.0%
ATTTGTGATGTGTGGAAGAC+TGG - chr7_1:8870748-8870767 Msa1008460:CDS 40.0%
GCAAGAGATAAAGAAGAAGG+TGG - chr7_1:8870810-8870829 Msa1008460:CDS 40.0%
AAGAAGGTGGATCAACTAGT+TGG - chr7_1:8870823-8870842 Msa1008460:CDS 40.0%
GGGTTAACATGTCCTTGAAC+TGG + chr7_1:8868473-8868492 None:intergenic 45.0%
TCTAGCCAAACATGGTTGCA+AGG - chr7_1:8868514-8868533 Msa1008460:CDS 45.0%
AGTGACCTTGCAACCATGTT+TGG + chr7_1:8868522-8868541 None:intergenic 45.0%
TACCAACTGAGCTAAGGTCA+CGG + chr7_1:8869269-8869288 None:intergenic 45.0%
! TGACCTTAGCTCAGTTGGTA+AGG - chr7_1:8869269-8869288 Msa1008460:intron 45.0%
TGTCCTTACCAACTGAGCTA+AGG + chr7_1:8869275-8869294 None:intergenic 45.0%
ACAACAAATTTCCCATGGCG+CGG - chr7_1:8870169-8870188 Msa1008460:intron 45.0%
ACTGCTTATGATCTTGAGCC+TGG - chr7_1:8870268-8870287 Msa1008460:intron 45.0%
GGACCAATTGGTAGGAACTT+TGG + chr7_1:8870310-8870329 None:intergenic 45.0%
CCATCAATGGACCAATTGGT+AGG + chr7_1:8870318-8870337 None:intergenic 45.0%
CCTACCAATTGGTCCATTGA+TGG - chr7_1:8870315-8870334 Msa1008460:intron 45.0%
CTTGCCATCAATGGACCAAT+TGG + chr7_1:8870322-8870341 None:intergenic 45.0%
GTCTAGAAGCTCAAGTCCTA+GGG + chr7_1:8870482-8870501 None:intergenic 45.0%
TGTCTAGAAGCTCAAGTCCT+AGG + chr7_1:8870483-8870502 None:intergenic 45.0%
GGACGAACAACCCAAAGAAA+AGG + chr7_1:8870508-8870527 None:intergenic 45.0%
CTTATGAAGCACGCAATCGA+GGG + chr7_1:8870631-8870650 None:intergenic 45.0%
ACTTATGAAGCACGCAATCG+AGG + chr7_1:8870632-8870651 None:intergenic 45.0%
GCGTGCTTCATAAGTCATTG+TGG - chr7_1:8870637-8870656 Msa1008460:CDS 45.0%
CTTCAGGCTCCAAACCATCT+GGG + chr7_1:8868622-8868641 None:intergenic 50.0%
TCTTCAGGCTCCAAACCATC+TGG + chr7_1:8868623-8868642 None:intergenic 50.0%
! CTTTGGAAGTCTAGGAGGCA+TGG + chr7_1:8868690-8868709 None:intergenic 50.0%
!! TATGGGTTGGGCTTTGGAAG+TGG - chr7_1:8868775-8868794 Msa1008460:CDS 50.0%
!! ATGGGTTGGGCTTTGGAAGT+GGG - chr7_1:8868776-8868795 Msa1008460:CDS 50.0%
TCCAGCTTCTGCCACTACTT+TGG - chr7_1:8868832-8868851 Msa1008460:CDS 50.0%
GACAGCACAAGCCAAAGTAG+TGG + chr7_1:8868846-8868865 None:intergenic 50.0%
ACCAACTGAGCTAAGGTCAC+GGG + chr7_1:8869268-8869287 None:intergenic 50.0%
AGCAGTACAAAGCCCCATTC+TGG - chr7_1:8869547-8869566 Msa1008460:intron 50.0%
! CGATCTCCTTTTCGCATTGC+AGG - chr7_1:8870091-8870110 Msa1008460:intron 50.0%
GGATTGCCTGCAATGCGAAA+AGG + chr7_1:8870100-8870119 None:intergenic 50.0%
CAAGTGGTGACACTCCCAGA+TGG - chr7_1:8868605-8868624 Msa1008460:CDS 55.0%
GGTGACACTCCCAGATGGTT+TGG - chr7_1:8868610-8868629 Msa1008460:CDS 55.0%
GCCAAAGTAGTGGCAGAAGC+TGG + chr7_1:8868836-8868855 None:intergenic 55.0%
CCAACTGAGCTAAGGTCACG+GGG + chr7_1:8869267-8869286 None:intergenic 55.0%
AAGGTCCGAGGTTCGAATCC+CGG - chr7_1:8869310-8869329 Msa1008460:intron 55.0%
! ATAGAAGAGGGAAGGGGCGT+GGG - chr7_1:8869511-8869530 Msa1008460:intron 55.0%
! ATTGACGCAGTCGGAAGCGT+AGG - chr7_1:8869611-8869630 Msa1008460:intron 55.0%
! TCGGAAGCGTAGGCTAGCAA+GGG - chr7_1:8869621-8869640 Msa1008460:intron 55.0%
TCTTATCTACGCCGCGCCAT+GGG + chr7_1:8870183-8870202 None:intergenic 55.0%
ATCTTATCTACGCCGCGCCA+TGG + chr7_1:8870184-8870203 None:intergenic 55.0%
TGAAGCACGCAATCGAGGGA+TGG + chr7_1:8870627-8870646 None:intergenic 55.0%
CCCCGTGACCTTAGCTCAGT+TGG - chr7_1:8869264-8869283 Msa1008460:CDS 60.0%
GGTGTCCGGGATTCGAACCT+CGG + chr7_1:8869318-8869337 None:intergenic 60.0%
CATAGAAGAGGGAAGGGGCG+TGG - chr7_1:8869510-8869529 Msa1008460:intron 60.0%
! GTCGGAAGCGTAGGCTAGCA+AGG - chr7_1:8869620-8869639 Msa1008460:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 8868434 8870963 8868434 ID=Msa1008460;Name=Msa1008460
chr7_1 mRNA 8868434 8870963 8868434 ID=Msa1008460-mRNA-1;Parent=Msa1008460;Name=Msa1008460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|441
chr7_1 exon 8870489 8870963 8870489 ID=Msa1008460-mRNA-1:exon:2559;Parent=Msa1008460-mRNA-1
chr7_1 exon 8868434 8869284 8868434 ID=Msa1008460-mRNA-1:exon:2558;Parent=Msa1008460-mRNA-1
chr7_1 CDS 8870489 8870963 8870489 ID=Msa1008460-mRNA-1:cds;Parent=Msa1008460-mRNA-1
chr7_1 CDS 8868434 8869284 8868434 ID=Msa1008460-mRNA-1:cds;Parent=Msa1008460-mRNA-1
Gene Sequence

>Msa1008460

ATGGGTGTATTGCCACATTTTCTTGTTATACCATATCCAGTTCAAGGACATGTTAACCCCCTTATGCAATTCTCACAAGTTCTAGCCAAACATGGTTGCAAGGTCACTTTTCTACATACTGAGTTTAACCATAAACGATCGAAAACTGGTGTTTCCGAGCAAGATAAGATACAAGTGGTGACACTCCCAGATGGTTTGGAGCCTGAAGATGATAGAAGTGATATAAAGAAAGTTCTTTTTTCAATTAAAAGTACCATGCCTCCTAGACTTCCAAAGCTTATAGAAGATGTTAATGCTTTGAATGTTGACAACAATATCAAATGGATTGTTGCTACATTTAATATGGGTTGGGCTTTGGAAGTGGGACACAATTTGGGAATCAAAGGGGCTCTACTTTTTCCAGCTTCTGCCACTACTTTGGCTTGTGCTGTCTGCATACCTAAACTTATTGAGGATGGGATTATTGATTCTGCAGGCAATCCCACCAAAAAACAAGAAATTCAAATCTCCCCTGATATACCTATGATAGACACAACAAATTTCCCATGGCGCGGCGTAGATAAGATGTTATTTGATCATTTTGTGCAAGAGATACAAACTATAAAGTTTGGAGAACGGTGGCTTTGCAACACTGCTTATGATCTTGAGCCTGGTGTATTTTCCATATCACCAAAGTTCCTACCAATTGGTCCATTGATGGCAAGTAACAACAAGAAAAGTTCATTTTGGCAAGAAGATACAACTTGCTTAGATTGGTTGAATAATCAAGCACCTCAATCTGTCATATATGTTTCCTTTGGTAGTATGGTAGTAATGGACCAAAACCAATTTAATGAACTAGCCCTAGGACTTGAGCTTCTAGACAAGCCTTTTCTTTGGGTTGTTCGTCCTAGTAATGACAATAAGGTAAACTATGCATACCCAAATGATTTCCATGGAAGTAAAGGTAAAATTGTTGGTTGGGCACCACAAAGTAAAATCTTGAACCATCCCTCGATTGCGTGCTTCATAAGTCATTGTGGATGGAATTCTACCATAGAAGGTGTACATGTTGGTGTACCTTTATTGTGTTGGCCATTTTCAGTTGATCAGTTTCTCAATAAATCGTATATTTGTGATGTGTGGAAGACTGGACTTGAATTAGAGAAAGATGATAATGGTTTTATATCAAGGCAAGAGATAAAGAAGAAGGTGGATCAACTAGTTGGTGATGATGATATAAAGGCAATGTGTTTGAAAATGAAGAAAATGATCATTAGTAATATAGAAGAAGGTGGTCAGTCATCACATAATCTCCAAAAGTTTATTAGTTGTGTTAAAGCCTAA

Protein sequence

>Msa1008460

MGVLPHFLVIPYPVQGHVNPLMQFSQVLAKHGCKVTFLHTEFNHKRSKTGVSEQDKIQVVTLPDGLEPEDDRSDIKKVLFSIKSTMPPRLPKLIEDVNALNVDNNIKWIVATFNMGWALEVGHNLGIKGALLFPASATTLACAVCIPKLIEDGIIDSAGNPTKKQEIQISPDIPMIDTTNFPWRGVDKMLFDHFVQEIQTIKFGERWLCNTAYDLEPGVFSISPKFLPIGPLMASNNKKSSFWQEDTTCLDWLNNQAPQSVIYVSFGSMVVMDQNQFNELALGLELLDKPFLWVVRPSNDNKVNYAYPNDFHGSKGKIVGWAPQSKILNHPSIACFISHCGWNSTIEGVHVGVPLLCWPFSVDQFLNKSYICDVWKTGLELEKDDNGFISRQEIKKKVDQLVGDDDIKAMCLKMKKMIISNIEEGGQSSHNLQKFISCVKA*