Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462840 | AAP33165.1 | 99.835 | 607 | 1 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462840 | sp|Q06215|PPO_VICFA | 71.429 | 616 | 157 | 9 | 1 | 607 | 1 | 606 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462840 | Q7Y249 | 99.835 | 607 | 1 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa1462840 | 0.813296 | 2.750542e-51 | -8.615850e-47 |
| Msa0015090 | Msa1462840 | 0.801052 | 1.080100e-48 | -8.615850e-47 |
| Msa0023470 | Msa1462840 | 0.812512 | 4.085060e-51 | -8.615850e-47 |
| Msa0028660 | Msa1462840 | 0.805595 | 1.237321e-49 | -8.615850e-47 |
| Msa0037880 | Msa1462840 | 0.802415 | 5.671557e-49 | -8.615850e-47 |
| Msa0043980 | Msa1462840 | 0.824442 | 8.053467e-54 | -8.615850e-47 |
| Msa0049750 | Msa1462840 | 0.802714 | 4.922151e-49 | -8.615850e-47 |
| Msa0083280 | Msa1462840 | 0.801583 | 8.409972e-49 | -8.615850e-47 |
| Msa0090100 | Msa1462840 | 0.824342 | 8.501739e-54 | -8.615850e-47 |
| Msa0096030 | Msa1462840 | 0.803822 | 2.902077e-49 | -8.615850e-47 |
| Msa1359040 | Msa1462840 | 0.807753 | 4.332776e-50 | -8.615850e-47 |
| Msa1371580 | Msa1462840 | 0.802175 | 6.354390e-49 | -8.615850e-47 |
| Msa1374470 | Msa1462840 | 0.801925 | 7.152345e-49 | -8.615850e-47 |
| Msa1379710 | Msa1462840 | 0.805023 | 1.630551e-49 | -8.615850e-47 |
| Msa1392260 | Msa1462840 | 0.800865 | 1.179264e-48 | -8.615850e-47 |
| Msa1397120 | Msa1462840 | 0.840104 | 1.063068e-57 | -8.615850e-47 |
| Msa1401290 | Msa1462840 | 0.985514 | 8.367531e-164 | -8.615850e-47 |
| Msa1403890 | Msa1462840 | 0.835409 | 1.706856e-56 | -8.615850e-47 |
| Msa1407600 | Msa1462840 | 0.803261 | 3.792920e-49 | -8.615850e-47 |
| Msa1424450 | Msa1462840 | 0.823943 | 1.054749e-53 | -8.615850e-47 |
| Msa1425100 | Msa1462840 | 0.817050 | 4.031993e-52 | -8.615850e-47 |
| Msa1427230 | Msa1462840 | 0.826975 | 2.019698e-54 | -8.615850e-47 |
| Msa1430680 | Msa1462840 | 0.821622 | 3.660298e-53 | -8.615850e-47 |
| Msa1435370 | Msa1462840 | 0.804861 | 1.762915e-49 | -8.615850e-47 |
| Msa1437910 | Msa1462840 | 0.802537 | 5.352944e-49 | -8.615850e-47 |
| Msa1440000 | Msa1462840 | 0.801877 | 7.319477e-49 | -8.615850e-47 |
| Msa1440910 | Msa1462840 | 0.805209 | 1.490829e-49 | -8.615850e-47 |
| Msa1444740 | Msa1462840 | 0.846839 | 1.687888e-59 | -8.615850e-47 |
| Msa1460830 | Msa1462840 | 0.821368 | 4.190253e-53 | -8.615850e-47 |
| Msa1462840 | Msa1463670 | 0.805050 | 1.609186e-49 | -8.615850e-47 |
| Msa1462840 | Msa1466730 | 0.803299 | 3.725609e-49 | -8.615850e-47 |
| Msa0608710 | Msa1462840 | 0.844274 | 8.365698e-59 | -8.615850e-47 |
| Msa0610430 | Msa1462840 | 0.817543 | 3.122861e-52 | -8.615850e-47 |
| Msa0615310 | Msa1462840 | 0.811970 | 5.362143e-51 | -8.615850e-47 |
| Msa0617640 | Msa1462840 | 0.805375 | 1.376050e-49 | -8.615850e-47 |
| Msa0620960 | Msa1462840 | 0.805441 | 1.332861e-49 | -8.615850e-47 |
| Msa0633060 | Msa1462840 | 0.800063 | 1.717797e-48 | -8.615850e-47 |
| Msa0649490 | Msa1462840 | 0.804670 | 1.932585e-49 | -8.615850e-47 |
| Msa0653490 | Msa1462840 | 0.819687 | 1.018945e-52 | -8.615850e-47 |
| Msa0654720 | Msa1462840 | 0.828667 | 7.914758e-55 | -8.615850e-47 |
| Msa0673460 | Msa1462840 | 0.816913 | 4.326993e-52 | -8.615850e-47 |
| Msa0684330 | Msa1462840 | 0.816222 | 6.181957e-52 | -8.615850e-47 |
| Msa0685360 | Msa1462840 | 0.802096 | 6.598102e-49 | -8.615850e-47 |
| Msa0693380 | Msa1462840 | 0.805682 | 1.186386e-49 | -8.615850e-47 |
| Msa0698360 | Msa1462840 | 0.830525 | 2.796242e-55 | -8.615850e-47 |
| Msa0711100 | Msa1462840 | 0.810458 | 1.141411e-50 | -8.615850e-47 |
| Msa0731180 | Msa1462840 | 0.853670 | 2.049755e-61 | -8.615850e-47 |
| Msa0750430 | Msa1462840 | 0.815308 | 9.878790e-52 | -8.615850e-47 |
| Msa0771580 | Msa1462840 | 0.826708 | 2.338546e-54 | -8.615850e-47 |
| Msa0771720 | Msa1462840 | 0.846362 | 2.278779e-59 | -8.615850e-47 |
| Msa0773840 | Msa1462840 | 0.824120 | 9.585201e-54 | -8.615850e-47 |
| Msa0795080 | Msa1462840 | 0.831815 | 1.348075e-55 | -8.615850e-47 |
| Msa0795720 | Msa1462840 | 0.800278 | 1.553240e-48 | -8.615850e-47 |
| Msa0827350 | Msa1462840 | -0.808951 | 2.406385e-50 | -8.615850e-47 |
| Msa0832150 | Msa1462840 | 0.815463 | 9.129028e-52 | -8.615850e-47 |
| Msa0833460 | Msa1462840 | 0.805327 | 1.408061e-49 | -8.615850e-47 |
| Msa0147920 | Msa1462840 | 0.845740 | 3.363689e-59 | -8.615850e-47 |
| Msa0178860 | Msa1462840 | -0.801608 | 8.309953e-49 | -8.615850e-47 |
| Msa0188830 | Msa1462840 | 0.802896 | 4.512620e-49 | -8.615850e-47 |
| Msa0191910 | Msa1462840 | 0.978668 | 2.617184e-146 | -8.615850e-47 |
| Msa0206010 | Msa1462840 | 0.824898 | 6.288103e-54 | -8.615850e-47 |
| Msa0216530 | Msa1462840 | 0.819487 | 1.131700e-52 | -8.615850e-47 |
| Msa0217680 | Msa1462840 | 0.839448 | 1.575090e-57 | -8.615850e-47 |
| Msa0223010 | Msa1462840 | 0.807852 | 4.128620e-50 | -8.615850e-47 |
| Msa0234020 | Msa1462840 | 0.965493 | 1.122586e-124 | -8.615850e-47 |
| Msa1233500 | Msa1462840 | 0.819027 | 1.440664e-52 | -8.615850e-47 |
| Msa1233890 | Msa1462840 | 0.806938 | 6.450102e-50 | -8.615850e-47 |
| Msa1240180 | Msa1462840 | 0.802484 | 5.488621e-49 | -8.615850e-47 |
| Msa1247250 | Msa1462840 | 0.805300 | 1.427038e-49 | -8.615850e-47 |
| Msa1249240 | Msa1462840 | 0.806412 | 8.328399e-50 | -8.615850e-47 |
| Msa1250890 | Msa1462840 | 0.834618 | 2.700277e-56 | -8.615850e-47 |
| Msa1276440 | Msa1462840 | 0.834407 | 3.051229e-56 | -8.615850e-47 |
| Msa1279210 | Msa1462840 | 0.812620 | 3.869114e-51 | -8.615850e-47 |
| Msa1304840 | Msa1462840 | 0.819824 | 9.482510e-53 | -8.615850e-47 |
| Msa1305340 | Msa1462840 | 0.813860 | 2.066851e-51 | -8.615850e-47 |
| Msa1305660 | Msa1462840 | 0.816496 | 5.365856e-52 | -8.615850e-47 |
| Msa1306840 | Msa1462840 | 0.813590 | 2.369853e-51 | -8.615850e-47 |
| Msa1307740 | Msa1462840 | 0.823153 | 1.614247e-53 | -8.615850e-47 |
| Msa1314340 | Msa1462840 | 0.820185 | 7.840500e-53 | -8.615850e-47 |
| Msa1320620 | Msa1462840 | 0.804367 | 2.234813e-49 | -8.615850e-47 |
| Msa1322190 | Msa1462840 | 0.809730 | 1.637902e-50 | -8.615850e-47 |
| Msa1327550 | Msa1462840 | 0.805996 | 1.019161e-49 | -8.615850e-47 |
| Msa1331320 | Msa1462840 | 0.801964 | 7.022664e-49 | -8.615850e-47 |
| Msa1333410 | Msa1462840 | 0.841441 | 4.743805e-58 | -8.615850e-47 |
| Msa1342100 | Msa1462840 | 0.803739 | 3.019912e-49 | -8.615850e-47 |
| Msa0376910 | Msa1462840 | 0.836472 | 9.172822e-57 | -8.615850e-47 |
| Msa0379640 | Msa1462840 | 0.819298 | 1.249690e-52 | -8.615850e-47 |
| Msa0383800 | Msa1462840 | 0.805141 | 1.540799e-49 | -8.615850e-47 |
| Msa0389810 | Msa1462840 | 0.830630 | 2.635767e-55 | -8.615850e-47 |
| Msa0399340 | Msa1462840 | 0.801160 | 1.026414e-48 | -8.615850e-47 |
| Msa0404030 | Msa1462840 | 0.802770 | 4.790981e-49 | -8.615850e-47 |
| Msa0412840 | Msa1462840 | 0.817305 | 3.533649e-52 | -8.615850e-47 |
| Msa0433360 | Msa1462840 | 0.819528 | 1.107922e-52 | -8.615850e-47 |
| Msa0436760 | Msa1462840 | 0.809778 | 1.599490e-50 | -8.615850e-47 |
| Msa0442200 | Msa1462840 | 0.815947 | 7.119790e-52 | -8.615850e-47 |
| Msa0468130 | Msa1462840 | 0.833259 | 5.908616e-56 | -8.615850e-47 |
| Msa0469990 | Msa1462840 | 0.801829 | 7.484628e-49 | -8.615850e-47 |
| Msa0471900 | Msa1462840 | 0.823908 | 1.075197e-53 | -8.615850e-47 |
| Msa0477080 | Msa1462840 | 0.836126 | 1.123288e-56 | -8.615850e-47 |
| Msa0477130 | Msa1462840 | -0.827472 | 1.535244e-54 | -8.615850e-47 |
| Msa0477260 | Msa1462840 | 0.800182 | 1.624711e-48 | -8.615850e-47 |
| Msa0479970 | Msa1462840 | 0.813530 | 2.442493e-51 | -8.615850e-47 |
| Msa0982270 | Msa1462840 | 0.827583 | 1.443759e-54 | -8.615850e-47 |
| Msa1002480 | Msa1462840 | 0.819334 | 1.226502e-52 | -8.615850e-47 |
| Msa1008460 | Msa1462840 | 0.814204 | 1.735499e-51 | -8.615850e-47 |
| Msa1021540 | Msa1462840 | 0.802603 | 5.188592e-49 | -8.615850e-47 |
| Msa1023920 | Msa1462840 | 0.811649 | 6.300195e-51 | -8.615850e-47 |
| Msa1034150 | Msa1462840 | 0.807213 | 5.640943e-50 | -8.615850e-47 |
| Msa1055680 | Msa1462840 | 0.812452 | 4.210633e-51 | -8.615850e-47 |
| Msa1063510 | Msa1462840 | 0.812329 | 4.478595e-51 | -8.615850e-47 |
| Msa1082500 | Msa1462840 | 0.844456 | 7.475429e-59 | -8.615850e-47 |
| Msa1098420 | Msa1462840 | 0.803461 | 3.447339e-49 | -8.615850e-47 |
| Msa1102790 | Msa1462840 | 0.810811 | 9.572538e-51 | -8.615850e-47 |
| Msa0257500 | Msa1462840 | 0.802806 | 4.711499e-49 | -8.615850e-47 |
| Msa0272450 | Msa1462840 | 0.801472 | 8.861024e-49 | -8.615850e-47 |
| Msa0287410 | Msa1462840 | 0.836912 | 7.086314e-57 | -8.615850e-47 |
| Msa0291500 | Msa1462840 | 0.801172 | 1.020819e-48 | -8.615850e-47 |
| Msa0307950 | Msa1462840 | 0.813491 | 2.492254e-51 | -8.615850e-47 |
| Msa0319170 | Msa1462840 | 0.827927 | 1.194036e-54 | -8.615850e-47 |
| Msa0326110 | Msa1462840 | 0.830465 | 2.892807e-55 | -8.615850e-47 |
| Msa0339620 | Msa1462840 | 0.806865 | 6.684421e-50 | -8.615850e-47 |
| Msa0344980 | Msa1462840 | 0.802259 | 6.108075e-49 | -8.615850e-47 |
| Msa0357760 | Msa1462840 | 0.807064 | 6.065281e-50 | -8.615850e-47 |
| Msa0357830 | Msa1462840 | 0.802539 | 5.347243e-49 | -8.615850e-47 |
| Msa1107900 | Msa1462840 | 0.808553 | 2.926280e-50 | -8.615850e-47 |
| Msa1124540 | Msa1462840 | -0.804159 | 2.469233e-49 | -8.615850e-47 |
| Msa1131220 | Msa1462840 | 0.807853 | 4.127048e-50 | -8.615850e-47 |
| Msa1197410 | Msa1462840 | 0.808499 | 3.005751e-50 | -8.615850e-47 |
| Msa1201560 | Msa1462840 | 0.812375 | 4.375517e-51 | -8.615850e-47 |
| Msa1217470 | Msa1462840 | 0.808381 | 3.184405e-50 | -8.615850e-47 |
| Msa0484720 | Msa1462840 | 0.805450 | 1.327108e-49 | -8.615850e-47 |
| Msa0484780 | Msa1462840 | 0.835194 | 1.933907e-56 | -8.615850e-47 |
| Msa0485120 | Msa1462840 | 0.803903 | 2.790975e-49 | -8.615850e-47 |
| Msa0493630 | Msa1462840 | 0.832262 | 1.044797e-55 | -8.615850e-47 |
| Msa0502100 | Msa1462840 | 0.807518 | 4.861030e-50 | -8.615850e-47 |
| Msa0503200 | Msa1462840 | 0.809076 | 2.262180e-50 | -8.615850e-47 |
| Msa0519740 | Msa1462840 | 0.801874 | 7.329605e-49 | -8.615850e-47 |
| Msa0521430 | Msa1462840 | 0.822107 | 2.827166e-53 | -8.615850e-47 |
| Msa0527250 | Msa1462840 | 0.802453 | 5.571575e-49 | -8.615850e-47 |
| Msa0551890 | Msa1462840 | 0.803452 | 3.463043e-49 | -8.615850e-47 |
| Msa0553460 | Msa1462840 | 0.803728 | 3.035806e-49 | -8.615850e-47 |
| Msa0561130 | Msa1462840 | -0.808871 | 2.503141e-50 | -8.615850e-47 |
| Msa0561230 | Msa1462840 | 0.822472 | 2.325721e-53 | -8.615850e-47 |
| Msa0563840 | Msa1462840 | 0.807410 | 5.123422e-50 | -8.615850e-47 |
| Msa0575470 | Msa1462840 | 0.826367 | 2.821212e-54 | -8.615850e-47 |
| Msa0577500 | Msa1462840 | 0.812059 | 5.129459e-51 | -8.615850e-47 |
| Msa0579130 | Msa1462840 | 0.801890 | 7.271733e-49 | -8.615850e-47 |
| Msa0860410 | Msa1462840 | 0.802534 | 5.360358e-49 | -8.615850e-47 |
| Msa0869120 | Msa1462840 | 0.818820 | 1.605274e-52 | -8.615850e-47 |
| Msa0876580 | Msa1462840 | 0.809226 | 2.100575e-50 | -8.615850e-47 |
| Msa0923870 | Msa1462840 | 0.801936 | 7.116336e-49 | -8.615850e-47 |
| Msa0958920 | Msa1462840 | 0.805868 | 1.084628e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462840 | MtrunA17_Chr2g0281801 | 93.399 | 606 | 39 | 1 | 2 | 607 | 3 | 607 | 0.0 | 1122 |
| Msa1462840 | MtrunA17_Chr4g0015101 | 80.619 | 614 | 102 | 7 | 1 | 606 | 1 | 605 | 0.0 | 976 |
| Msa1462840 | MtrunA17_Chr2g0281811 | 80.945 | 614 | 102 | 6 | 1 | 606 | 1 | 607 | 0.0 | 944 |
| Msa1462840 | MtrunA17_Chr4g0015121 | 85.057 | 261 | 26 | 2 | 1 | 252 | 1 | 257 | 2.26e-157 | 460 |
| Msa1462840 | MtrunA17_Chr4g0015121 | 69.057 | 265 | 37 | 5 | 330 | 589 | 256 | 480 | 3.39e-104 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 142 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTTTGCTTTGCCATTT+TGG | 0.094294 | tig0042674:-5326 | Msa1462840:CDS |
| TGTTGTTCTTGCTCTTCTTT+AGG | 0.145727 | tig0042674:+5846 | Msa1462840:intergenic |
| AGAAGACTAATAGTTGTTTA+AGG | 0.156260 | tig0042674:-4348 | Msa1462840:CDS |
| CCAGCAAACTCCGTATTAAT+TGG | 0.212601 | tig0042674:+4415 | Msa1462840:intergenic |
| TTCTTGCTCCTTGATTTCTT+TGG | 0.230170 | tig0042674:+4550 | Msa1462840:intergenic |
| GTTGTTCTTGCTCTTCTTTA+GGG | 0.239224 | tig0042674:+5847 | Msa1462840:intergenic |
| GAAAGGTCGGGAGGGGAAAT+TGG | 0.243755 | tig0042674:+5732 | Msa1462840:intergenic |
| GCTCTTCTTTAGGGTTGTTT+TGG | 0.254211 | tig0042674:+5856 | Msa1462840:intergenic |
| ACGGATTTGTTGGAAGATTT+AGG | 0.255790 | tig0042674:-4316 | Msa1462840:CDS |
| ATTCAAATATTGATAGGTTT+TGG | 0.275330 | tig0042674:-4912 | Msa1462840:CDS |
| TGATGTACTGTCGGCGTAAA+TGG | 0.281215 | tig0042674:+5269 | Msa1462840:intergenic |
| TATTTCTATGAAAGAATCTT+AGG | 0.288900 | tig0042674:-5366 | Msa1462840:CDS |
| TGCTGCTTGTCTTACCCTTA+AGG | 0.296185 | tig0042674:+5599 | Msa1462840:intergenic |
| TGTTACGTGTCCATTGGTTT+TGG | 0.301487 | tig0042674:-4602 | Msa1462840:CDS |
| GAAGACTAATAGTTGTTTAA+GGG | 0.324028 | tig0042674:-4347 | Msa1462840:CDS |
| ATTGAGTTTGATAAGAGTTT+AGG | 0.335970 | tig0042674:-4487 | Msa1462840:CDS |
| GCTGCTTGTCTTACCCTTAA+GGG | 0.339143 | tig0042674:+5600 | Msa1462840:intergenic |
| CCAATTAATACGGAGTTTGC+TGG | 0.344275 | tig0042674:-4415 | Msa1462840:CDS |
| AGATTCTTTCATAGAAATAA+AGG | 0.345545 | tig0042674:+5370 | Msa1462840:intergenic |
| AAGATTTCAAAGACAAAGAT+TGG | 0.346760 | tig0042674:-4858 | Msa1462840:CDS |
| AAAACATTGTTGTAGGAAAT+AGG | 0.348303 | tig0042674:-5824 | Msa1462840:CDS |
| TTCATCAAATCAACCCTTAA+GGG | 0.351711 | tig0042674:-5613 | Msa1462840:CDS |
| AATAGGAGGAATGTTCTAAT+TGG | 0.356586 | tig0042674:-5807 | Msa1462840:CDS |
| ATTGGCCTTGGAGGACTTTG+TGG | 0.360187 | tig0042674:-5789 | Msa1462840:CDS |
| CTCACCATTCAAATATTGAT+AGG | 0.360856 | tig0042674:-4918 | Msa1462840:CDS |
| CTTCATCAAATCAACCCTTA+AGG | 0.361728 | tig0042674:-5614 | Msa1462840:CDS |
| TTGTTTAAGGGTTGGATTAA+CGG | 0.362141 | tig0042674:-4335 | Msa1462840:CDS |
| TGAACTTGAAGATCAAGGTT+AGG | 0.377636 | tig0042674:+5429 | Msa1462840:intergenic |
| GTTACTTTGGTTCCAAGGTA+TGG | 0.381312 | tig0042674:-4268 | Msa1462840:CDS |
| ATCTTCAAGTTCATAACTCT+TGG | 0.384840 | tig0042674:-5419 | Msa1462840:CDS |
| CATTAATGATGAAGATGATA+AGG | 0.389930 | tig0042674:-4446 | Msa1462840:CDS |
| TCCATGTGGAACATTCTCTA+TGG | 0.390806 | tig0042674:+5032 | Msa1462840:intergenic |
| GGAGAGTCGTAGTTCCAAAA+TGG | 0.399283 | tig0042674:+5312 | Msa1462840:intergenic |
| TACCACTGAATGTGATTACT+TGG | 0.400770 | tig0042674:+5889 | Msa1462840:intergenic |
| GGTTGGATTAACGGATTTGT+TGG | 0.401538 | tig0042674:-4326 | Msa1462840:CDS |
| GAACAACAAAACATTGTTGT+AGG | 0.404778 | tig0042674:-5831 | Msa1462840:CDS |
| TAAGAATCTTGTGAAGGTTA+AGG | 0.414983 | tig0042674:-4803 | Msa1462840:CDS |
| TGGAACTACGACTCTCCTAA+TGG | 0.417955 | tig0042674:-5306 | Msa1462840:CDS |
| AGGAATGTTCTAATTGGCCT+TGG | 0.425473 | tig0042674:-5801 | Msa1462840:CDS |
| TTTGTCTATACATTGTAGTA+AGG | 0.426525 | tig0042674:+5136 | Msa1462840:intergenic |
| ATTGTTTGGTGTTGCACCTA+AGG | 0.429664 | tig0042674:+5686 | Msa1462840:intergenic |
| GGAGAAAGAAGAAGAGGAAG+AGG | 0.440966 | tig0042674:-4527 | Msa1462840:CDS |
| GAGGGAAGTTGCATGCCATT+AGG | 0.441891 | tig0042674:+5291 | Msa1462840:intergenic |
| GGTGATTAAGCCAATTAATA+CGG | 0.446630 | tig0042674:-4425 | Msa1462840:CDS |
| GGACAACAATTAATATTGTT+TGG | 0.448332 | tig0042674:+5672 | Msa1462840:intergenic |
| GTAAGGCTTTCATGAGTTCA+AGG | 0.448450 | tig0042674:+5535 | Msa1462840:intergenic |
| TACAAAACTACGTGGATCAC+TGG | 0.449934 | tig0042674:+5509 | Msa1462840:intergenic |
| ATTGGAGAAGCTAGGGCAAA+AGG | 0.452064 | tig0042674:+5750 | Msa1462840:intergenic |
| CACATGGACCAGTTCATAGA+TGG | 0.452517 | tig0042674:-5017 | Msa1462840:CDS |
| CTTAAGGGTTGATTTGATGA+AGG | 0.453951 | tig0042674:+5615 | Msa1462840:intergenic |
| TGTGAAAATGGATGCGAAGA+AGG | 0.454166 | tig0042674:+5954 | Msa1462840:intergenic |
| ACCATGGAATATCAACATCT+TGG | 0.455528 | tig0042674:+4740 | Msa1462840:intergenic |
| GTGAAAATGGATGCGAAGAA+GGG | 0.456815 | tig0042674:+5955 | Msa1462840:intergenic |
| GACATTGATTGTGTTAATGA+AGG | 0.456891 | tig0042674:+5998 | Msa1462840:intergenic |
| ACTAATAGTTGTTTAAGGGT+TGG | 0.457888 | tig0042674:-4343 | Msa1462840:CDS |
| TTCTCTATGGATCCAGCACC+AGG | 0.458069 | tig0042674:+5045 | Msa1462840:intergenic |
| TACTACAATGTATAGACAAA+TGG | 0.458391 | tig0042674:-5133 | Msa1462840:CDS |
| GGACCACATGTGGAAAGGTC+GGG | 0.458660 | tig0042674:+5720 | Msa1462840:intergenic |
| GAACTTGAAGATCAAGGTTA+GGG | 0.463135 | tig0042674:+5430 | Msa1462840:intergenic |
| ACAATTCCTTTCCCATACCT+TGG | 0.467192 | tig0042674:+4256 | Msa1462840:intergenic |
| TAAAGGTACCATCTATGAAA+AGG | 0.468558 | tig0042674:+5387 | Msa1462840:intergenic |
| AATGTTCTAATTGGCCTTGG+AGG | 0.476202 | tig0042674:-5798 | Msa1462840:CDS |
| CAAGAAGGAGAAAGAAGAAG+AGG | 0.479890 | tig0042674:-4533 | Msa1462840:CDS |
| TCACCACTCCATCTATGAAC+TGG | 0.479921 | tig0042674:+5009 | Msa1462840:intergenic |
| AGCTAGGGCAAAAGGGTTAG+TGG | 0.480736 | tig0042674:+5758 | Msa1462840:intergenic |
| TTTAAGTCTATGAGTGTTGG+AGG | 0.482226 | tig0042674:+5210 | Msa1462840:intergenic |
| AGTTATGAACTTGAAGATCA+AGG | 0.484752 | tig0042674:+5424 | Msa1462840:intergenic |
| ACCAAGATGTTGATATTCCA+TGG | 0.489583 | tig0042674:-4741 | Msa1462840:CDS |
| ACATGTGGAAAGGTCGGGAG+GGG | 0.493375 | tig0042674:+5725 | Msa1462840:intergenic |
| ATACATTGTAGTAAGGTTTG+AGG | 0.494060 | tig0042674:+5143 | Msa1462840:intergenic |
| ATGGATCCAGCACCAGGATC+GGG | 0.501520 | tig0042674:+5051 | Msa1462840:intergenic |
| TTACTTTGGTTCCAAGGTAT+GGG | 0.503602 | tig0042674:-4267 | Msa1462840:CDS |
| TTGTGGTTACTTTGGTTCCA+AGG | 0.504871 | tig0042674:-4273 | Msa1462840:CDS |
| GATGAACCCGATCCTGGTGC+TGG | 0.506025 | tig0042674:-5057 | Msa1462840:CDS |
| CTCGGAAGCTCTTATCGTGC+CGG | 0.506112 | tig0042674:-5081 | Msa1462840:CDS |
| TGATAGCATTGTGGTTACTT+TGG | 0.510624 | tig0042674:-4281 | Msa1462840:CDS |
| GAGGTTGATGACTAGCGGTT+CGG | 0.511134 | tig0042674:+5229 | Msa1462840:intergenic |
| AGAAGGGGAAATCTTTGAGT+TGG | 0.512161 | tig0042674:+5971 | Msa1462840:intergenic |
| GCCGGTGATGAACCCGATCC+TGG | 0.512406 | tig0042674:-5063 | Msa1462840:CDS |
| GGTCCACCGGATCTACCCTT+AGG | 0.513048 | tig0042674:-5702 | Msa1462840:CDS |
| AAAACCTATCAATATTTGAA+TGG | 0.514138 | tig0042674:+4914 | Msa1462840:intergenic |
| TTGTGATCATGGGAAGAATG+AGG | 0.516496 | tig0042674:+4376 | Msa1462840:intergenic |
| GTTCGGAGTTTGTCGTAAAG+AGG | 0.519726 | tig0042674:+5246 | Msa1462840:intergenic |
| GATGTTGATGATGATGCAAA+TGG | 0.521124 | tig0042674:-5174 | Msa1462840:CDS |
| AATGTGATTACTTGGCGTCT+TGG | 0.521989 | tig0042674:+5897 | Msa1462840:intergenic |
| TATAGACAAATGGTCTCAAA+CGG | 0.524321 | tig0042674:-5123 | Msa1462840:CDS |
| TGAAGAGGCCAAAGAAATCA+AGG | 0.524353 | tig0042674:-4558 | Msa1462840:CDS |
| ACCAGGATCGGGTTCATCAC+CGG | 0.526470 | tig0042674:+5062 | Msa1462840:intergenic |
| CCTTTCCACATGTGGTCCAC+CGG | 0.527586 | tig0042674:-5715 | Msa1462840:CDS |
| CAAAATGGCAAAGCAAAGGT+TGG | 0.533090 | tig0042674:+5327 | Msa1462840:intergenic |
| GTTGCACCTAAGGGTAGATC+CGG | 0.534058 | tig0042674:+5696 | Msa1462840:intergenic |
| TATGGATCCAGCACCAGGAT+CGG | 0.534663 | tig0042674:+5050 | Msa1462840:intergenic |
| TTGGAGAAGCTAGGGCAAAA+GGG | 0.536024 | tig0042674:+5751 | Msa1462840:intergenic |
| GAGTTATGTTACGTGTCCAT+TGG | 0.537060 | tig0042674:-4608 | Msa1462840:CDS |
| CCACATGTGGAAAGGTCGGG+AGG | 0.538572 | tig0042674:+5723 | Msa1462840:intergenic |
| TAGTTTAAGTCTATGAGTGT+TGG | 0.542990 | tig0042674:+5207 | Msa1462840:intergenic |
| TGATTGTGTTAATGAAGGCA+AGG | 0.544583 | tig0042674:+6003 | Msa1462840:intergenic |
| ACGTGGATCACTGGATGGTA+AGG | 0.547230 | tig0042674:+5518 | Msa1462840:intergenic |
| GCAACCTAACTTTGAAAACA+TGG | 0.554305 | tig0042674:-4980 | Msa1462840:CDS |
| GTTGGAAGATTTAGGAGCTG+AGG | 0.554915 | tig0042674:-4308 | Msa1462840:CDS |
| GATGGTGCATATTCTCAAGT+TGG | 0.555692 | tig0042674:-5456 | Msa1462840:CDS |
| CCTCCCGACCTTTCCACATG+TGG | 0.563094 | tig0042674:-5723 | Msa1462840:CDS |
| CACATGTGGAAAGGTCGGGA+GGG | 0.565843 | tig0042674:+5724 | Msa1462840:intergenic |
| AAAGAAATCAAGGAGCAAGA+AGG | 0.566088 | tig0042674:-4548 | Msa1462840:CDS |
| TGGACCACATGTGGAAAGGT+CGG | 0.567741 | tig0042674:+5719 | Msa1462840:intergenic |
| TCTATATGGAAAACACTTGG+TGG | 0.568653 | tig0042674:-4889 | Msa1462840:CDS |
| CTATATGGAAAACACTTGGT+GGG | 0.577886 | tig0042674:-4888 | Msa1462840:CDS |
| ACAACATTATCCAAAACCAA+TGG | 0.579529 | tig0042674:+4592 | Msa1462840:intergenic |
| TTGGTTCCAAGGTATGGGAA+AGG | 0.581052 | tig0042674:-4262 | Msa1462840:CDS |
| TGTACTGTCGGCGTAAATGG+AGG | 0.581530 | tig0042674:+5272 | Msa1462840:intergenic |
| ATCCATTGTGCTTATTGTGA+TGG | 0.582664 | tig0042674:-5474 | Msa1462840:CDS |
| TTGTTTGGTGTTGCACCTAA+GGG | 0.584388 | tig0042674:+5687 | Msa1462840:intergenic |
| TAGATCCGGTGGACCACATG+TGG | 0.585860 | tig0042674:+5710 | Msa1462840:intergenic |
| AGGGGAAATTGGAGAAGCTA+GGG | 0.590414 | tig0042674:+5743 | Msa1462840:intergenic |
| GAGGGGAAATTGGAGAAGCT+AGG | 0.590748 | tig0042674:+5742 | Msa1462840:intergenic |
| TGAAAATGGATGCGAAGAAG+GGG | 0.592532 | tig0042674:+5956 | Msa1462840:intergenic |
| TAAGGCTTTCATGAGTTCAA+GGG | 0.593472 | tig0042674:+5536 | Msa1462840:intergenic |
| TTGTTAGTACAATTGTGAAG+AGG | 0.594333 | tig0042674:-4573 | Msa1462840:CDS |
| TGGTCTATATGGAAAACACT+TGG | 0.595881 | tig0042674:-4892 | Msa1462840:CDS |
| TGAAAATAAGAATCTTGTGA+AGG | 0.601196 | tig0042674:-4809 | Msa1462840:CDS |
| CCGGTGGACCACATGTGGAA+AGG | 0.609583 | tig0042674:+5715 | Msa1462840:intergenic |
| CGCCAAGTAATCACATTCAG+TGG | 0.612736 | tig0042674:-5891 | Msa1462840:CDS |
| CGGCACGATAAGAGCTTCCG+AGG | 0.613285 | tig0042674:+5082 | Msa1462840:intergenic |
| AAACTACGTGGATCACTGGA+TGG | 0.614635 | tig0042674:+5513 | Msa1462840:intergenic |
| GTACTGTCGGCGTAAATGGA+GGG | 0.618793 | tig0042674:+5273 | Msa1462840:intergenic |
| TTAGGTTTAGCATTTAACCA+TGG | 0.619630 | tig0042674:+4724 | Msa1462840:intergenic |
| GCACCTAAGGGTAGATCCGG+TGG | 0.622516 | tig0042674:+5699 | Msa1462840:intergenic |
| GTTCCAAAATGGCAAAGCAA+AGG | 0.631068 | tig0042674:+5323 | Msa1462840:intergenic |
| GTAAAGAGGTGATGTACTGT+CGG | 0.631500 | tig0042674:+5260 | Msa1462840:intergenic |
| CAACCTAACTTTGAAAACAT+GGG | 0.632027 | tig0042674:-4979 | Msa1462840:CDS |
| CACCATCACAATAAGCACAA+TGG | 0.632308 | tig0042674:+5472 | Msa1462840:intergenic |
| GGACCAGTTCATAGATGGAG+TGG | 0.632855 | tig0042674:-5012 | Msa1462840:CDS |
| GATTGTGTTAATGAAGGCAA+GGG | 0.634167 | tig0042674:+6004 | Msa1462840:intergenic |
| CATCTATGAACTGGTCCATG+TGG | 0.636161 | tig0042674:+5018 | Msa1462840:intergenic |
| AAGTACCACAAAGTCCTCCA+AGG | 0.662236 | tig0042674:+5784 | Msa1462840:intergenic |
| TGTTGGAGGTTGATGACTAG+CGG | 0.671745 | tig0042674:+5224 | Msa1462840:intergenic |
| TCCATAGAGAATGTTCCACA+TGG | 0.674858 | tig0042674:-5033 | Msa1462840:CDS |
| GCTTGTTGTACAAAACTACG+TGG | 0.685420 | tig0042674:+5501 | Msa1462840:intergenic |
| ACATTGTTGTAGGAAATAGG+AGG | 0.694266 | tig0042674:-5821 | Msa1462840:CDS |
| GTGCAAGTGAGATTAACTCA+AGG | 0.695549 | tig0042674:-4630 | Msa1462840:CDS |
| TGAGGATGATGATAGCATTG+TGG | 0.720047 | tig0042674:-4290 | Msa1462840:CDS |
| ATTGTGTTAATGAAGGCAAG+GGG | 0.729284 | tig0042674:+6005 | Msa1462830:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATACAAAAAAATG+TGG | - | tig0042674:5547-5566 | Msa1462840:CDS | 10.0% |
| !! | AAAAAATATACAAAAAAATG+TGG | - | tig0042674:5547-5566 | Msa1462840:CDS | 10.0% |
| !!! | TTTGTAATTTATGATTTTTG+TGG | + | tig0042674:4601-4620 | Msa1462840:intergenic | 15.0% |
| !!! | TTTTGTATATTTTTTCTACA+TGG | + | tig0042674:5542-5561 | Msa1462840:intergenic | 15.0% |
| !!! | TTTGTAATTTATGATTTTTG+TGG | + | tig0042674:4601-4620 | Msa1462840:intergenic | 15.0% |
| !!! | TTTTGTATATTTTTTCTACA+TGG | + | tig0042674:5542-5561 | Msa1462840:intergenic | 15.0% |
| !!! | TTTTGTTGTTTTTGTGAAAA+TGG | + | tig0042674:4300-4319 | Msa1465890:intergenic | 20.0% |
| !!! | TTTATGATTTTTGTGGAATT+TGG | + | tig0042674:4594-4613 | Msa1462840:intergenic | 20.0% |
| !! | AGATTCTTTCATAGAAATAA+AGG | + | tig0042674:4872-4891 | Msa1462840:intergenic | 20.0% |
| !!! | TATTTCTATGAAAGAATCTT+AGG | - | tig0042674:4873-4892 | Msa1462840:CDS | 20.0% |
| !! | AAAACCTATCAATATTTGAA+TGG | + | tig0042674:5328-5347 | Msa1462840:intergenic | 20.0% |
| !!! | ATTCAAATATTGATAGGTTT+TGG | - | tig0042674:5327-5346 | Msa1462840:CDS | 20.0% |
| !!! | ATATTTTTTCTACATGGTTT+AGG | + | tig0042674:5536-5555 | Msa1462840:intergenic | 20.0% |
| !!! | TTTTGTTGTTTTTGTGAAAA+TGG | + | tig0042674:4300-4319 | Msa1462840:intergenic | 20.0% |
| !!! | TTTATGATTTTTGTGGAATT+TGG | + | tig0042674:4594-4613 | Msa1462840:intergenic | 20.0% |
| !! | AGATTCTTTCATAGAAATAA+AGG | + | tig0042674:4872-4891 | Msa1462840:intergenic | 20.0% |
| !!! | TATTTCTATGAAAGAATCTT+AGG | - | tig0042674:4873-4892 | Msa1462840:CDS | 20.0% |
| !! | AAAACCTATCAATATTTGAA+TGG | + | tig0042674:5328-5347 | Msa1462840:intergenic | 20.0% |
| !!! | ATTCAAATATTGATAGGTTT+TGG | - | tig0042674:5327-5346 | Msa1462840:CDS | 20.0% |
| !!! | ATATTTTTTCTACATGGTTT+AGG | + | tig0042674:5536-5555 | Msa1462840:intergenic | 20.0% |
| ! | AAAACATTGTTGTAGGAAAT+AGG | - | tig0042674:4415-4434 | Msa1462840:CDS | 25.0% |
| ! | GGACAACAATTAATATTGTT+TGG | + | tig0042674:4570-4589 | Msa1462840:intergenic | 25.0% |
| !!! | TCTTTTTTCCTTTTCATAGA+TGG | - | tig0042674:4844-4863 | Msa1462840:CDS | 25.0% |
| ! | TTTGTCTATACATTGTAGTA+AGG | + | tig0042674:5106-5125 | Msa1462840:intergenic | 25.0% |
| ! | TACTACAATGTATAGACAAA+TGG | - | tig0042674:5106-5125 | Msa1462840:CDS | 25.0% |
| ! | AAGATTTCAAAGACAAAGAT+TGG | - | tig0042674:5381-5400 | Msa1462840:CDS | 25.0% |
| ! | TGAAAATAAGAATCTTGTGA+AGG | - | tig0042674:5430-5449 | Msa1462840:CDS | 25.0% |
| ! | TGTCTTGACACAAAAAAATT+AGG | - | tig0042674:5467-5486 | Msa1462840:CDS | 25.0% |
| !!! | CAAGGAAATTTTTTTGGTAT+TGG | - | tig0042674:5578-5597 | Msa1462840:CDS | 25.0% |
| ! | ATTGAGTTTGATAAGAGTTT+AGG | - | tig0042674:5752-5771 | Msa1462840:CDS | 25.0% |
| ! | CATTAATGATGAAGATGATA+AGG | - | tig0042674:5793-5812 | Msa1462840:CDS | 25.0% |
| ! | AGAAGACTAATAGTTGTTTA+AGG | - | tig0042674:5891-5910 | Msa1462840:CDS | 25.0% |
| ! | GAAGACTAATAGTTGTTTAA+GGG | - | tig0042674:5892-5911 | Msa1462840:CDS | 25.0% |
| ! | AAAACATTGTTGTAGGAAAT+AGG | - | tig0042674:4415-4434 | Msa1462840:CDS | 25.0% |
| ! | GGACAACAATTAATATTGTT+TGG | + | tig0042674:4570-4589 | Msa1462840:intergenic | 25.0% |
| !!! | TCTTTTTTCCTTTTCATAGA+TGG | - | tig0042674:4844-4863 | Msa1462840:CDS | 25.0% |
| ! | TTTGTCTATACATTGTAGTA+AGG | + | tig0042674:5106-5125 | Msa1462840:intergenic | 25.0% |
| ! | TACTACAATGTATAGACAAA+TGG | - | tig0042674:5106-5125 | Msa1462840:CDS | 25.0% |
| ! | AAGATTTCAAAGACAAAGAT+TGG | - | tig0042674:5381-5400 | Msa1462840:CDS | 25.0% |
| ! | TGAAAATAAGAATCTTGTGA+AGG | - | tig0042674:5430-5449 | Msa1462840:CDS | 25.0% |
| ! | TGTCTTGACACAAAAAAATT+AGG | - | tig0042674:5467-5486 | Msa1462840:CDS | 25.0% |
| !!! | CAAGGAAATTTTTTTGGTAT+TGG | - | tig0042674:5578-5597 | Msa1462840:CDS | 25.0% |
| ! | ATTGAGTTTGATAAGAGTTT+AGG | - | tig0042674:5752-5771 | Msa1462840:CDS | 25.0% |
| ! | CATTAATGATGAAGATGATA+AGG | - | tig0042674:5793-5812 | Msa1462840:CDS | 25.0% |
| ! | AGAAGACTAATAGTTGTTTA+AGG | - | tig0042674:5891-5910 | Msa1462840:CDS | 25.0% |
| ! | GAAGACTAATAGTTGTTTAA+GGG | - | tig0042674:5892-5911 | Msa1462840:CDS | 25.0% |
| ! | GACATTGATTGTGTTAATGA+AGG | + | tig0042674:4244-4263 | Msa1465890:intergenic | 30.0% |
| GAACAACAAAACATTGTTGT+AGG | - | tig0042674:4408-4427 | Msa1462840:CDS | 30.0% | |
| AATAGGAGGAATGTTCTAAT+TGG | - | tig0042674:4432-4451 | Msa1462840:CDS | 30.0% | |
| ! | ATGATTTTTGTGGAATTTGG+TGG | + | tig0042674:4591-4610 | Msa1462840:intergenic | 30.0% |
| TTCATCAAATCAACCCTTAA+GGG | - | tig0042674:4626-4645 | Msa1462840:CDS | 30.0% | |
| AGTTATGAACTTGAAGATCA+AGG | + | tig0042674:4818-4837 | Msa1462840:intergenic | 30.0% | |
| ! | ATCTTCAAGTTCATAACTCT+TGG | - | tig0042674:4820-4839 | Msa1462840:CDS | 30.0% |
| !! | TAAAGGTACCATCTATGAAA+AGG | + | tig0042674:4855-4874 | Msa1462840:intergenic | 30.0% |
| TAGTTTAAGTCTATGAGTGT+TGG | + | tig0042674:5035-5054 | Msa1462840:intergenic | 30.0% | |
| ATACATTGTAGTAAGGTTTG+AGG | + | tig0042674:5099-5118 | Msa1462840:intergenic | 30.0% | |
| TATAGACAAATGGTCTCAAA+CGG | - | tig0042674:5116-5135 | Msa1462840:CDS | 30.0% | |
| ! | AAAACTTCAAGTCTTTTCCT+CGG | - | tig0042674:5140-5159 | Msa1462840:CDS | 30.0% |
| ! | CAACCTAACTTTGAAAACAT+GGG | - | tig0042674:5260-5279 | Msa1462840:CDS | 30.0% |
| GAATGGTGAGAGAAAAAAAT+AGG | + | tig0042674:5311-5330 | Msa1462840:intergenic | 30.0% | |
| CTCACCATTCAAATATTGAT+AGG | - | tig0042674:5321-5340 | Msa1462840:CDS | 30.0% | |
| !! | TTGATAGGTTTTGGTCTATA+TGG | - | tig0042674:5336-5355 | Msa1462840:CDS | 30.0% |
| TAAGAATCTTGTGAAGGTTA+AGG | - | tig0042674:5436-5455 | Msa1462840:CDS | 30.0% | |
| TTAGGTTTAGCATTTAACCA+TGG | + | tig0042674:5518-5537 | Msa1462840:intergenic | 30.0% | |
| !!! | GTTGCACAAGGAAATTTTTT+TGG | - | tig0042674:5572-5591 | Msa1462840:CDS | 30.0% |
| ACAACATTATCCAAAACCAA+TGG | + | tig0042674:5650-5669 | Msa1462840:intergenic | 30.0% | |
| TTGTTAGTACAATTGTGAAG+AGG | - | tig0042674:5666-5685 | Msa1462840:CDS | 30.0% | |
| !! | AAGAGGTTTTAGTGATTGAA+GGG | - | tig0042674:5729-5748 | Msa1462840:CDS | 30.0% |
| GGTGATTAAGCCAATTAATA+CGG | - | tig0042674:5814-5833 | Msa1462840:CDS | 30.0% | |
| ! | CTTCTTCTTTTTGTGATCAT+GGG | + | tig0042674:5876-5895 | Msa1462840:intergenic | 30.0% |
| ! | TCTTCTTCTTTTTGTGATCA+TGG | + | tig0042674:5877-5896 | Msa1462840:intergenic | 30.0% |
| ACTAATAGTTGTTTAAGGGT+TGG | - | tig0042674:5896-5915 | Msa1462840:CDS | 30.0% | |
| TTGTTTAAGGGTTGGATTAA+CGG | - | tig0042674:5904-5923 | Msa1462840:CDS | 30.0% | |
| ! | GACATTGATTGTGTTAATGA+AGG | + | tig0042674:4244-4263 | Msa1462840:intergenic | 30.0% |
| GAACAACAAAACATTGTTGT+AGG | - | tig0042674:4408-4427 | Msa1462840:CDS | 30.0% | |
| AATAGGAGGAATGTTCTAAT+TGG | - | tig0042674:4432-4451 | Msa1462840:CDS | 30.0% | |
| ! | ATGATTTTTGTGGAATTTGG+TGG | + | tig0042674:4591-4610 | Msa1462840:intergenic | 30.0% |
| TTCATCAAATCAACCCTTAA+GGG | - | tig0042674:4626-4645 | Msa1462840:CDS | 30.0% | |
| AGTTATGAACTTGAAGATCA+AGG | + | tig0042674:4818-4837 | Msa1462840:intergenic | 30.0% | |
| ! | ATCTTCAAGTTCATAACTCT+TGG | - | tig0042674:4820-4839 | Msa1462840:CDS | 30.0% |
| !! | TAAAGGTACCATCTATGAAA+AGG | + | tig0042674:4855-4874 | Msa1462840:intergenic | 30.0% |
| TAGTTTAAGTCTATGAGTGT+TGG | + | tig0042674:5035-5054 | Msa1462840:intergenic | 30.0% | |
| ATACATTGTAGTAAGGTTTG+AGG | + | tig0042674:5099-5118 | Msa1462840:intergenic | 30.0% | |
| TATAGACAAATGGTCTCAAA+CGG | - | tig0042674:5116-5135 | Msa1462840:CDS | 30.0% | |
| ! | AAAACTTCAAGTCTTTTCCT+CGG | - | tig0042674:5140-5159 | Msa1462840:CDS | 30.0% |
| ! | CAACCTAACTTTGAAAACAT+GGG | - | tig0042674:5260-5279 | Msa1462840:CDS | 30.0% |
| GAATGGTGAGAGAAAAAAAT+AGG | + | tig0042674:5311-5330 | Msa1462840:intergenic | 30.0% | |
| CTCACCATTCAAATATTGAT+AGG | - | tig0042674:5321-5340 | Msa1462840:CDS | 30.0% | |
| !! | TTGATAGGTTTTGGTCTATA+TGG | - | tig0042674:5336-5355 | Msa1462840:CDS | 30.0% |
| TAAGAATCTTGTGAAGGTTA+AGG | - | tig0042674:5436-5455 | Msa1462840:CDS | 30.0% | |
| TTAGGTTTAGCATTTAACCA+TGG | + | tig0042674:5518-5537 | Msa1462840:intergenic | 30.0% | |
| !!! | GTTGCACAAGGAAATTTTTT+TGG | - | tig0042674:5572-5591 | Msa1462840:CDS | 30.0% |
| ACAACATTATCCAAAACCAA+TGG | + | tig0042674:5650-5669 | Msa1462840:intergenic | 30.0% | |
| TTGTTAGTACAATTGTGAAG+AGG | - | tig0042674:5666-5685 | Msa1462840:CDS | 30.0% | |
| !! | AAGAGGTTTTAGTGATTGAA+GGG | - | tig0042674:5729-5748 | Msa1462840:CDS | 30.0% |
| GGTGATTAAGCCAATTAATA+CGG | - | tig0042674:5814-5833 | Msa1462840:CDS | 30.0% | |
| ! | CTTCTTCTTTTTGTGATCAT+GGG | + | tig0042674:5876-5895 | Msa1462840:intergenic | 30.0% |
| ! | TCTTCTTCTTTTTGTGATCA+TGG | + | tig0042674:5877-5896 | Msa1462840:intergenic | 30.0% |
| ACTAATAGTTGTTTAAGGGT+TGG | - | tig0042674:5896-5915 | Msa1462840:CDS | 30.0% | |
| TTGTTTAAGGGTTGGATTAA+CGG | - | tig0042674:5904-5923 | Msa1462840:CDS | 30.0% | |
| ATTGTGTTAATGAAGGCAAG+GGG | + | tig0042674:4237-4256 | Msa1465890:intergenic | 35.0% | |
| GATTGTGTTAATGAAGGCAA+GGG | + | tig0042674:4238-4257 | Msa1465890:intergenic | 35.0% | |
| TGATTGTGTTAATGAAGGCA+AGG | + | tig0042674:4239-4258 | Msa1465890:intergenic | 35.0% | |
| TACCACTGAATGTGATTACT+TGG | + | tig0042674:4353-4372 | Msa1462840:intergenic | 35.0% | |
| GTTGTTCTTGCTCTTCTTTA+GGG | + | tig0042674:4395-4414 | Msa1462840:intergenic | 35.0% | |
| TGTTGTTCTTGCTCTTCTTT+AGG | + | tig0042674:4396-4415 | Msa1462840:intergenic | 35.0% | |
| ACATTGTTGTAGGAAATAGG+AGG | - | tig0042674:4418-4437 | Msa1462840:CDS | 35.0% | |
| !! | CTTAAGGGTTGATTTGATGA+AGG | + | tig0042674:4627-4646 | Msa1462840:intergenic | 35.0% |
| CTTCATCAAATCAACCCTTA+AGG | - | tig0042674:4625-4644 | Msa1462840:CDS | 35.0% | |
| TAAGGCTTTCATGAGTTCAA+GGG | + | tig0042674:4706-4725 | Msa1462840:intergenic | 35.0% | |
| ATCCATTGTGCTTATTGTGA+TGG | - | tig0042674:4765-4784 | Msa1462840:CDS | 35.0% | |
| GAACTTGAAGATCAAGGTTA+GGG | + | tig0042674:4812-4831 | Msa1462840:intergenic | 35.0% | |
| TGAACTTGAAGATCAAGGTT+AGG | + | tig0042674:4813-4832 | Msa1462840:intergenic | 35.0% | |
| !! | TTTAAGTCTATGAGTGTTGG+AGG | + | tig0042674:5032-5051 | Msa1462840:intergenic | 35.0% |
| !! | GATGTTGATGATGATGCAAA+TGG | - | tig0042674:5065-5084 | Msa1462840:CDS | 35.0% |
| ! | GCAACCTAACTTTGAAAACA+TGG | - | tig0042674:5259-5278 | Msa1462840:CDS | 35.0% |
| ! | ACTCCCATGTTTTCAAAGTT+AGG | + | tig0042674:5266-5285 | Msa1462840:intergenic | 35.0% |
| TGGTCTATATGGAAAACACT+TGG | - | tig0042674:5347-5366 | Msa1462840:CDS | 35.0% | |
| TCTATATGGAAAACACTTGG+TGG | - | tig0042674:5350-5369 | Msa1462840:CDS | 35.0% | |
| CTATATGGAAAACACTTGGT+GGG | - | tig0042674:5351-5370 | Msa1462840:CDS | 35.0% | |
| ACCAAGATGTTGATATTCCA+TGG | - | tig0042674:5498-5517 | Msa1462840:CDS | 35.0% | |
| ACCATGGAATATCAACATCT+TGG | + | tig0042674:5502-5521 | Msa1462840:intergenic | 35.0% | |
| AAAAATGTGGAAGTTGCACA+AGG | - | tig0042674:5560-5579 | Msa1462840:CDS | 35.0% | |
| TTCTTGCTCCTTGATTTCTT+TGG | + | tig0042674:5692-5711 | Msa1462840:intergenic | 35.0% | |
| AAAGAAATCAAGGAGCAAGA+AGG | - | tig0042674:5691-5710 | Msa1462840:CDS | 35.0% | |
| !! | GAAGAGGTTTTAGTGATTGA+AGG | - | tig0042674:5728-5747 | Msa1462840:CDS | 35.0% |
| !! | ACGGATTTGTTGGAAGATTT+AGG | - | tig0042674:5923-5942 | Msa1462840:CDS | 35.0% |
| TGATAGCATTGTGGTTACTT+TGG | - | tig0042674:5958-5977 | Msa1462840:CDS | 35.0% | |
| ! | TTACTTTGGTTCCAAGGTAT+GGG | - | tig0042674:5972-5991 | Msa1462840:CDS | 35.0% |
| ATTGTGTTAATGAAGGCAAG+GGG | + | tig0042674:4237-4256 | Msa1462840:intergenic | 35.0% | |
| GATTGTGTTAATGAAGGCAA+GGG | + | tig0042674:4238-4257 | Msa1462840:intergenic | 35.0% | |
| TGATTGTGTTAATGAAGGCA+AGG | + | tig0042674:4239-4258 | Msa1462840:intergenic | 35.0% | |
| TACCACTGAATGTGATTACT+TGG | + | tig0042674:4353-4372 | Msa1462840:intergenic | 35.0% | |
| GTTGTTCTTGCTCTTCTTTA+GGG | + | tig0042674:4395-4414 | Msa1462840:intergenic | 35.0% | |
| TGTTGTTCTTGCTCTTCTTT+AGG | + | tig0042674:4396-4415 | Msa1462840:intergenic | 35.0% | |
| ACATTGTTGTAGGAAATAGG+AGG | - | tig0042674:4418-4437 | Msa1462840:CDS | 35.0% | |
| !! | CTTAAGGGTTGATTTGATGA+AGG | + | tig0042674:4627-4646 | Msa1462840:intergenic | 35.0% |
| CTTCATCAAATCAACCCTTA+AGG | - | tig0042674:4625-4644 | Msa1462840:CDS | 35.0% | |
| TAAGGCTTTCATGAGTTCAA+GGG | + | tig0042674:4706-4725 | Msa1462840:intergenic | 35.0% | |
| ATCCATTGTGCTTATTGTGA+TGG | - | tig0042674:4765-4784 | Msa1462840:CDS | 35.0% | |
| GAACTTGAAGATCAAGGTTA+GGG | + | tig0042674:4812-4831 | Msa1462840:intergenic | 35.0% | |
| TGAACTTGAAGATCAAGGTT+AGG | + | tig0042674:4813-4832 | Msa1462840:intergenic | 35.0% | |
| !! | TTTAAGTCTATGAGTGTTGG+AGG | + | tig0042674:5032-5051 | Msa1462840:intergenic | 35.0% |
| !! | GATGTTGATGATGATGCAAA+TGG | - | tig0042674:5065-5084 | Msa1462840:CDS | 35.0% |
| ! | GCAACCTAACTTTGAAAACA+TGG | - | tig0042674:5259-5278 | Msa1462840:CDS | 35.0% |
| ! | ACTCCCATGTTTTCAAAGTT+AGG | + | tig0042674:5266-5285 | Msa1462840:intergenic | 35.0% |
| TGGTCTATATGGAAAACACT+TGG | - | tig0042674:5347-5366 | Msa1462840:CDS | 35.0% | |
| TCTATATGGAAAACACTTGG+TGG | - | tig0042674:5350-5369 | Msa1462840:CDS | 35.0% | |
| CTATATGGAAAACACTTGGT+GGG | - | tig0042674:5351-5370 | Msa1462840:CDS | 35.0% | |
| ACCAAGATGTTGATATTCCA+TGG | - | tig0042674:5498-5517 | Msa1462840:CDS | 35.0% | |
| ACCATGGAATATCAACATCT+TGG | + | tig0042674:5502-5521 | Msa1462840:intergenic | 35.0% | |
| AAAAATGTGGAAGTTGCACA+AGG | - | tig0042674:5560-5579 | Msa1462840:CDS | 35.0% | |
| TTCTTGCTCCTTGATTTCTT+TGG | + | tig0042674:5692-5711 | Msa1462840:intergenic | 35.0% | |
| AAAGAAATCAAGGAGCAAGA+AGG | - | tig0042674:5691-5710 | Msa1462840:CDS | 35.0% | |
| !! | GAAGAGGTTTTAGTGATTGA+AGG | - | tig0042674:5728-5747 | Msa1462840:CDS | 35.0% |
| !! | ACGGATTTGTTGGAAGATTT+AGG | - | tig0042674:5923-5942 | Msa1462840:CDS | 35.0% |
| TGATAGCATTGTGGTTACTT+TGG | - | tig0042674:5958-5977 | Msa1462840:CDS | 35.0% | |
| ! | TTACTTTGGTTCCAAGGTAT+GGG | - | tig0042674:5972-5991 | Msa1462840:CDS | 35.0% |
| AGAAGGGGAAATCTTTGAGT+TGG | + | tig0042674:4271-4290 | Msa1465890:intergenic | 40.0% | |
| TGAAAATGGATGCGAAGAAG+GGG | + | tig0042674:4286-4305 | Msa1465890:intergenic | 40.0% | |
| GTGAAAATGGATGCGAAGAA+GGG | + | tig0042674:4287-4306 | Msa1465890:intergenic | 40.0% | |
| TGTGAAAATGGATGCGAAGA+AGG | + | tig0042674:4288-4307 | Msa1465890:intergenic | 40.0% | |
| AATGTGATTACTTGGCGTCT+TGG | + | tig0042674:4345-4364 | Msa1465890:intergenic | 40.0% | |
| !!! | GCTCTTCTTTAGGGTTGTTT+TGG | + | tig0042674:4386-4405 | Msa1462840:intergenic | 40.0% |
| ! | AGGAATGTTCTAATTGGCCT+TGG | - | tig0042674:4438-4457 | Msa1462840:CDS | 40.0% |
| !! | AATGTTCTAATTGGCCTTGG+AGG | - | tig0042674:4441-4460 | Msa1462840:CDS | 40.0% |
| !! | TTGTTTGGTGTTGCACCTAA+GGG | + | tig0042674:4555-4574 | Msa1462840:intergenic | 40.0% |
| !! | ATTGTTTGGTGTTGCACCTA+AGG | + | tig0042674:4556-4575 | Msa1462840:intergenic | 40.0% |
| GTAAGGCTTTCATGAGTTCA+AGG | + | tig0042674:4707-4726 | Msa1462840:intergenic | 40.0% | |
| TACAAAACTACGTGGATCAC+TGG | + | tig0042674:4733-4752 | Msa1462840:intergenic | 40.0% | |
| !! | GCTTGTTGTACAAAACTACG+TGG | + | tig0042674:4741-4760 | Msa1462840:intergenic | 40.0% |
| CACCATCACAATAAGCACAA+TGG | + | tig0042674:4770-4789 | Msa1462840:intergenic | 40.0% | |
| GATGGTGCATATTCTCAAGT+TGG | - | tig0042674:4783-4802 | Msa1462840:CDS | 40.0% | |
| CAAAATGGCAAAGCAAAGGT+TGG | + | tig0042674:4915-4934 | Msa1462840:intergenic | 40.0% | |
| !! | CAACCTTTGCTTTGCCATTT+TGG | - | tig0042674:4913-4932 | Msa1462840:CDS | 40.0% |
| GTTCCAAAATGGCAAAGCAA+AGG | + | tig0042674:4919-4938 | Msa1462840:intergenic | 40.0% | |
| GTAAAGAGGTGATGTACTGT+CGG | + | tig0042674:4982-5001 | Msa1462840:intergenic | 40.0% | |
| TCCATAGAGAATGTTCCACA+TGG | - | tig0042674:5206-5225 | Msa1462840:CDS | 40.0% | |
| TCCATGTGGAACATTCTCTA+TGG | + | tig0042674:5210-5229 | Msa1462840:intergenic | 40.0% | |
| GTGCAAGTGAGATTAACTCA+AGG | - | tig0042674:5609-5628 | Msa1462840:CDS | 40.0% | |
| GAGTTATGTTACGTGTCCAT+TGG | - | tig0042674:5631-5650 | Msa1462840:CDS | 40.0% | |
| !!! | TGTTACGTGTCCATTGGTTT+TGG | - | tig0042674:5637-5656 | Msa1462840:CDS | 40.0% |
| TGAAGAGGCCAAAGAAATCA+AGG | - | tig0042674:5681-5700 | Msa1462840:CDS | 40.0% | |
| CAAGAAGGAGAAAGAAGAAG+AGG | - | tig0042674:5706-5725 | Msa1462840:CDS | 40.0% | |
| CCAGCAAACTCCGTATTAAT+TGG | + | tig0042674:5827-5846 | Msa1462840:intergenic | 40.0% | |
| CCAATTAATACGGAGTTTGC+TGG | - | tig0042674:5824-5843 | Msa1462840:CDS | 40.0% | |
| TTGTGATCATGGGAAGAATG+AGG | + | tig0042674:5866-5885 | Msa1462840:intergenic | 40.0% | |
| !! | GGTTGGATTAACGGATTTGT+TGG | - | tig0042674:5913-5932 | Msa1462840:CDS | 40.0% |
| TGAGGATGATGATAGCATTG+TGG | - | tig0042674:5949-5968 | Msa1462840:CDS | 40.0% | |
| ! | TTGTGGTTACTTTGGTTCCA+AGG | - | tig0042674:5966-5985 | Msa1462840:CDS | 40.0% |
| ! | GTTACTTTGGTTCCAAGGTA+TGG | - | tig0042674:5971-5990 | Msa1462840:CDS | 40.0% |
| ACAATTCCTTTCCCATACCT+TGG | + | tig0042674:5986-6005 | Msa1462840:intergenic | 40.0% | |
| AGAAGGGGAAATCTTTGAGT+TGG | + | tig0042674:4271-4290 | Msa1462840:intergenic | 40.0% | |
| TGAAAATGGATGCGAAGAAG+GGG | + | tig0042674:4286-4305 | Msa1462840:intergenic | 40.0% | |
| GTGAAAATGGATGCGAAGAA+GGG | + | tig0042674:4287-4306 | Msa1462840:intergenic | 40.0% | |
| TGTGAAAATGGATGCGAAGA+AGG | + | tig0042674:4288-4307 | Msa1462840:intergenic | 40.0% | |
| AATGTGATTACTTGGCGTCT+TGG | + | tig0042674:4345-4364 | Msa1462840:intergenic | 40.0% | |
| !!! | GCTCTTCTTTAGGGTTGTTT+TGG | + | tig0042674:4386-4405 | Msa1462840:intergenic | 40.0% |
| ! | AGGAATGTTCTAATTGGCCT+TGG | - | tig0042674:4438-4457 | Msa1462840:CDS | 40.0% |
| !! | AATGTTCTAATTGGCCTTGG+AGG | - | tig0042674:4441-4460 | Msa1462840:CDS | 40.0% |
| !! | TTGTTTGGTGTTGCACCTAA+GGG | + | tig0042674:4555-4574 | Msa1462840:intergenic | 40.0% |
| !! | ATTGTTTGGTGTTGCACCTA+AGG | + | tig0042674:4556-4575 | Msa1462840:intergenic | 40.0% |
| GTAAGGCTTTCATGAGTTCA+AGG | + | tig0042674:4707-4726 | Msa1462840:intergenic | 40.0% | |
| TACAAAACTACGTGGATCAC+TGG | + | tig0042674:4733-4752 | Msa1462840:intergenic | 40.0% | |
| !! | GCTTGTTGTACAAAACTACG+TGG | + | tig0042674:4741-4760 | Msa1462840:intergenic | 40.0% |
| CACCATCACAATAAGCACAA+TGG | + | tig0042674:4770-4789 | Msa1462840:intergenic | 40.0% | |
| GATGGTGCATATTCTCAAGT+TGG | - | tig0042674:4783-4802 | Msa1462840:CDS | 40.0% | |
| CAAAATGGCAAAGCAAAGGT+TGG | + | tig0042674:4915-4934 | Msa1462840:intergenic | 40.0% | |
| !! | CAACCTTTGCTTTGCCATTT+TGG | - | tig0042674:4913-4932 | Msa1462840:CDS | 40.0% |
| GTTCCAAAATGGCAAAGCAA+AGG | + | tig0042674:4919-4938 | Msa1462840:intergenic | 40.0% | |
| GTAAAGAGGTGATGTACTGT+CGG | + | tig0042674:4982-5001 | Msa1462840:intergenic | 40.0% | |
| TCCATAGAGAATGTTCCACA+TGG | - | tig0042674:5206-5225 | Msa1462840:CDS | 40.0% | |
| TCCATGTGGAACATTCTCTA+TGG | + | tig0042674:5210-5229 | Msa1462840:intergenic | 40.0% | |
| GTGCAAGTGAGATTAACTCA+AGG | - | tig0042674:5609-5628 | Msa1462840:CDS | 40.0% | |
| GAGTTATGTTACGTGTCCAT+TGG | - | tig0042674:5631-5650 | Msa1462840:CDS | 40.0% | |
| !!! | TGTTACGTGTCCATTGGTTT+TGG | - | tig0042674:5637-5656 | Msa1462840:CDS | 40.0% |
| TGAAGAGGCCAAAGAAATCA+AGG | - | tig0042674:5681-5700 | Msa1462840:CDS | 40.0% | |
| CAAGAAGGAGAAAGAAGAAG+AGG | - | tig0042674:5706-5725 | Msa1462840:CDS | 40.0% | |
| CCAGCAAACTCCGTATTAAT+TGG | + | tig0042674:5827-5846 | Msa1462840:intergenic | 40.0% | |
| CCAATTAATACGGAGTTTGC+TGG | - | tig0042674:5824-5843 | Msa1462840:CDS | 40.0% | |
| TTGTGATCATGGGAAGAATG+AGG | + | tig0042674:5866-5885 | Msa1462840:intergenic | 40.0% | |
| !! | GGTTGGATTAACGGATTTGT+TGG | - | tig0042674:5913-5932 | Msa1462840:CDS | 40.0% |
| TGAGGATGATGATAGCATTG+TGG | - | tig0042674:5949-5968 | Msa1462840:CDS | 40.0% | |
| ! | TTGTGGTTACTTTGGTTCCA+AGG | - | tig0042674:5966-5985 | Msa1462840:CDS | 40.0% |
| ! | GTTACTTTGGTTCCAAGGTA+TGG | - | tig0042674:5971-5990 | Msa1462840:CDS | 40.0% |
| ACAATTCCTTTCCCATACCT+TGG | + | tig0042674:5986-6005 | Msa1462840:intergenic | 40.0% | |
| CGCCAAGTAATCACATTCAG+TGG | - | tig0042674:4348-4367 | Msa1462840:CDS | 45.0% | |
| AAGTACCACAAAGTCCTCCA+AGG | + | tig0042674:4458-4477 | Msa1462840:intergenic | 45.0% | |
| TTGGAGAAGCTAGGGCAAAA+GGG | + | tig0042674:4491-4510 | Msa1462840:intergenic | 45.0% | |
| ATTGGAGAAGCTAGGGCAAA+AGG | + | tig0042674:4492-4511 | Msa1462840:intergenic | 45.0% | |
| AGGGGAAATTGGAGAAGCTA+GGG | + | tig0042674:4499-4518 | Msa1462840:intergenic | 45.0% | |
| GCTGCTTGTCTTACCCTTAA+GGG | + | tig0042674:4642-4661 | Msa1462840:intergenic | 45.0% | |
| ! | TGCTGCTTGTCTTACCCTTA+AGG | + | tig0042674:4643-4662 | Msa1462840:intergenic | 45.0% |
| AAACTACGTGGATCACTGGA+TGG | + | tig0042674:4729-4748 | Msa1462840:intergenic | 45.0% | |
| GGAGAGTCGTAGTTCCAAAA+TGG | + | tig0042674:4930-4949 | Msa1462840:intergenic | 45.0% | |
| TGGAACTACGACTCTCCTAA+TGG | - | tig0042674:4933-4952 | Msa1462840:CDS | 45.0% | |
| TGATGTACTGTCGGCGTAAA+TGG | + | tig0042674:4973-4992 | Msa1462840:intergenic | 45.0% | |
| GTTCGGAGTTTGTCGTAAAG+AGG | + | tig0042674:4996-5015 | Msa1462840:intergenic | 45.0% | |
| !! | TGTTGGAGGTTGATGACTAG+CGG | + | tig0042674:5018-5037 | Msa1462840:intergenic | 45.0% |
| CATCTATGAACTGGTCCATG+TGG | + | tig0042674:5224-5243 | Msa1462840:intergenic | 45.0% | |
| CACATGGACCAGTTCATAGA+TGG | - | tig0042674:5222-5241 | Msa1462840:CDS | 45.0% | |
| TCACCACTCCATCTATGAAC+TGG | + | tig0042674:5233-5252 | Msa1462840:intergenic | 45.0% | |
| GGAGAAAGAAGAAGAGGAAG+AGG | - | tig0042674:5712-5731 | Msa1462840:CDS | 45.0% | |
| GTTGGAAGATTTAGGAGCTG+AGG | - | tig0042674:5931-5950 | Msa1462840:CDS | 45.0% | |
| TTGGTTCCAAGGTATGGGAA+AGG | - | tig0042674:5977-5996 | Msa1462840:CDS | 45.0% | |
| CGCCAAGTAATCACATTCAG+TGG | - | tig0042674:4348-4367 | Msa1462840:CDS | 45.0% | |
| AAGTACCACAAAGTCCTCCA+AGG | + | tig0042674:4458-4477 | Msa1462840:intergenic | 45.0% | |
| TTGGAGAAGCTAGGGCAAAA+GGG | + | tig0042674:4491-4510 | Msa1462840:intergenic | 45.0% | |
| ATTGGAGAAGCTAGGGCAAA+AGG | + | tig0042674:4492-4511 | Msa1462840:intergenic | 45.0% | |
| AGGGGAAATTGGAGAAGCTA+GGG | + | tig0042674:4499-4518 | Msa1462840:intergenic | 45.0% | |
| GCTGCTTGTCTTACCCTTAA+GGG | + | tig0042674:4642-4661 | Msa1462840:intergenic | 45.0% | |
| ! | TGCTGCTTGTCTTACCCTTA+AGG | + | tig0042674:4643-4662 | Msa1462840:intergenic | 45.0% |
| AAACTACGTGGATCACTGGA+TGG | + | tig0042674:4729-4748 | Msa1462840:intergenic | 45.0% | |
| GGAGAGTCGTAGTTCCAAAA+TGG | + | tig0042674:4930-4949 | Msa1462840:intergenic | 45.0% | |
| TGGAACTACGACTCTCCTAA+TGG | - | tig0042674:4933-4952 | Msa1462840:CDS | 45.0% | |
| TGATGTACTGTCGGCGTAAA+TGG | + | tig0042674:4973-4992 | Msa1462840:intergenic | 45.0% | |
| GTTCGGAGTTTGTCGTAAAG+AGG | + | tig0042674:4996-5015 | Msa1462840:intergenic | 45.0% | |
| !! | TGTTGGAGGTTGATGACTAG+CGG | + | tig0042674:5018-5037 | Msa1462840:intergenic | 45.0% |
| CATCTATGAACTGGTCCATG+TGG | + | tig0042674:5224-5243 | Msa1462840:intergenic | 45.0% | |
| CACATGGACCAGTTCATAGA+TGG | - | tig0042674:5222-5241 | Msa1462840:CDS | 45.0% | |
| TCACCACTCCATCTATGAAC+TGG | + | tig0042674:5233-5252 | Msa1462840:intergenic | 45.0% | |
| GGAGAAAGAAGAAGAGGAAG+AGG | - | tig0042674:5712-5731 | Msa1462840:CDS | 45.0% | |
| GTTGGAAGATTTAGGAGCTG+AGG | - | tig0042674:5931-5950 | Msa1462840:CDS | 45.0% | |
| TTGGTTCCAAGGTATGGGAA+AGG | - | tig0042674:5977-5996 | Msa1462840:CDS | 45.0% | |
| !! | ATTGGCCTTGGAGGACTTTG+TGG | - | tig0042674:4450-4469 | Msa1462840:CDS | 50.0% |
| AGCTAGGGCAAAAGGGTTAG+TGG | + | tig0042674:4484-4503 | Msa1462840:intergenic | 50.0% | |
| GAGGGGAAATTGGAGAAGCT+AGG | + | tig0042674:4500-4519 | Msa1462840:intergenic | 50.0% | |
| TGGACCACATGTGGAAAGGT+CGG | + | tig0042674:4523-4542 | Msa1462840:intergenic | 50.0% | |
| GTTGCACCTAAGGGTAGATC+CGG | + | tig0042674:4546-4565 | Msa1462840:intergenic | 50.0% | |
| ACGTGGATCACTGGATGGTA+AGG | + | tig0042674:4724-4743 | Msa1462840:intergenic | 50.0% | |
| GAGGGAAGTTGCATGCCATT+AGG | + | tig0042674:4951-4970 | Msa1462840:intergenic | 50.0% | |
| GTACTGTCGGCGTAAATGGA+GGG | + | tig0042674:4969-4988 | Msa1462840:intergenic | 50.0% | |
| TGTACTGTCGGCGTAAATGG+AGG | + | tig0042674:4970-4989 | Msa1462840:intergenic | 50.0% | |
| !! | GAGGTTGATGACTAGCGGTT+CGG | + | tig0042674:5013-5032 | Msa1462840:intergenic | 50.0% |
| TATGGATCCAGCACCAGGAT+CGG | + | tig0042674:5192-5211 | Msa1462840:intergenic | 50.0% | |
| TTCTCTATGGATCCAGCACC+AGG | + | tig0042674:5197-5216 | Msa1462840:intergenic | 50.0% | |
| GGACCAGTTCATAGATGGAG+TGG | - | tig0042674:5227-5246 | Msa1462840:CDS | 50.0% | |
| !! | ATTGGCCTTGGAGGACTTTG+TGG | - | tig0042674:4450-4469 | Msa1462840:CDS | 50.0% |
| AGCTAGGGCAAAAGGGTTAG+TGG | + | tig0042674:4484-4503 | Msa1462840:intergenic | 50.0% | |
| GAGGGGAAATTGGAGAAGCT+AGG | + | tig0042674:4500-4519 | Msa1462840:intergenic | 50.0% | |
| TGGACCACATGTGGAAAGGT+CGG | + | tig0042674:4523-4542 | Msa1462840:intergenic | 50.0% | |
| GTTGCACCTAAGGGTAGATC+CGG | + | tig0042674:4546-4565 | Msa1462840:intergenic | 50.0% | |
| ACGTGGATCACTGGATGGTA+AGG | + | tig0042674:4724-4743 | Msa1462840:intergenic | 50.0% | |
| GAGGGAAGTTGCATGCCATT+AGG | + | tig0042674:4951-4970 | Msa1462840:intergenic | 50.0% | |
| GTACTGTCGGCGTAAATGGA+GGG | + | tig0042674:4969-4988 | Msa1462840:intergenic | 50.0% | |
| TGTACTGTCGGCGTAAATGG+AGG | + | tig0042674:4970-4989 | Msa1462840:intergenic | 50.0% | |
| !! | GAGGTTGATGACTAGCGGTT+CGG | + | tig0042674:5013-5032 | Msa1462840:intergenic | 50.0% |
| TATGGATCCAGCACCAGGAT+CGG | + | tig0042674:5192-5211 | Msa1462840:intergenic | 50.0% | |
| TTCTCTATGGATCCAGCACC+AGG | + | tig0042674:5197-5216 | Msa1462840:intergenic | 50.0% | |
| GGACCAGTTCATAGATGGAG+TGG | - | tig0042674:5227-5246 | Msa1462840:CDS | 50.0% | |
| GAAAGGTCGGGAGGGGAAAT+TGG | + | tig0042674:4510-4529 | Msa1462840:intergenic | 55.0% | |
| ACATGTGGAAAGGTCGGGAG+GGG | + | tig0042674:4517-4536 | Msa1462840:intergenic | 55.0% | |
| CACATGTGGAAAGGTCGGGA+GGG | + | tig0042674:4518-4537 | Msa1462840:intergenic | 55.0% | |
| GGACCACATGTGGAAAGGTC+GGG | + | tig0042674:4522-4541 | Msa1462840:intergenic | 55.0% | |
| CCTTTCCACATGTGGTCCAC+CGG | - | tig0042674:4524-4543 | Msa1462840:CDS | 55.0% | |
| TAGATCCGGTGGACCACATG+TGG | + | tig0042674:4532-4551 | Msa1462840:intergenic | 55.0% | |
| CTCGGAAGCTCTTATCGTGC+CGG | - | tig0042674:5158-5177 | Msa1462840:CDS | 55.0% | |
| ACCAGGATCGGGTTCATCAC+CGG | + | tig0042674:5180-5199 | Msa1462840:intergenic | 55.0% | |
| ATGGATCCAGCACCAGGATC+GGG | + | tig0042674:5191-5210 | Msa1462840:intergenic | 55.0% | |
| GAAAGGTCGGGAGGGGAAAT+TGG | + | tig0042674:4510-4529 | Msa1462840:intergenic | 55.0% | |
| ACATGTGGAAAGGTCGGGAG+GGG | + | tig0042674:4517-4536 | Msa1462840:intergenic | 55.0% | |
| CACATGTGGAAAGGTCGGGA+GGG | + | tig0042674:4518-4537 | Msa1462840:intergenic | 55.0% | |
| GGACCACATGTGGAAAGGTC+GGG | + | tig0042674:4522-4541 | Msa1462840:intergenic | 55.0% | |
| CCTTTCCACATGTGGTCCAC+CGG | - | tig0042674:4524-4543 | Msa1462840:CDS | 55.0% | |
| TAGATCCGGTGGACCACATG+TGG | + | tig0042674:4532-4551 | Msa1462840:intergenic | 55.0% | |
| CTCGGAAGCTCTTATCGTGC+CGG | - | tig0042674:5158-5177 | Msa1462840:CDS | 55.0% | |
| ACCAGGATCGGGTTCATCAC+CGG | + | tig0042674:5180-5199 | Msa1462840:intergenic | 55.0% | |
| ATGGATCCAGCACCAGGATC+GGG | + | tig0042674:5191-5210 | Msa1462840:intergenic | 55.0% | |
| CCACATGTGGAAAGGTCGGG+AGG | + | tig0042674:4519-4538 | Msa1462840:intergenic | 60.0% | |
| CCTCCCGACCTTTCCACATG+TGG | - | tig0042674:4516-4535 | Msa1462840:CDS | 60.0% | |
| CCGGTGGACCACATGTGGAA+AGG | + | tig0042674:4527-4546 | Msa1462840:intergenic | 60.0% | |
| GGTCCACCGGATCTACCCTT+AGG | - | tig0042674:4537-4556 | Msa1462840:CDS | 60.0% | |
| GCACCTAAGGGTAGATCCGG+TGG | + | tig0042674:4543-4562 | Msa1462840:intergenic | 60.0% | |
| CGGCACGATAAGAGCTTCCG+AGG | + | tig0042674:5160-5179 | Msa1462840:intergenic | 60.0% | |
| GATGAACCCGATCCTGGTGC+TGG | - | tig0042674:5182-5201 | Msa1462840:CDS | 60.0% | |
| CCACATGTGGAAAGGTCGGG+AGG | + | tig0042674:4519-4538 | Msa1462840:intergenic | 60.0% | |
| CCTCCCGACCTTTCCACATG+TGG | - | tig0042674:4516-4535 | Msa1462840:CDS | 60.0% | |
| CCGGTGGACCACATGTGGAA+AGG | + | tig0042674:4527-4546 | Msa1462840:intergenic | 60.0% | |
| GGTCCACCGGATCTACCCTT+AGG | - | tig0042674:4537-4556 | Msa1462840:CDS | 60.0% | |
| GCACCTAAGGGTAGATCCGG+TGG | + | tig0042674:4543-4562 | Msa1462840:intergenic | 60.0% | |
| CGGCACGATAAGAGCTTCCG+AGG | + | tig0042674:5160-5179 | Msa1462840:intergenic | 60.0% | |
| GATGAACCCGATCCTGGTGC+TGG | - | tig0042674:5182-5201 | Msa1462840:CDS | 60.0% | |
| GCCGGTGATGAACCCGATCC+TGG | - | tig0042674:5176-5195 | Msa1462840:CDS | 65.0% | |
| GCCGGTGATGAACCCGATCC+TGG | - | tig0042674:5176-5195 | Msa1462840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042674 | gene | 4219 | 6042 | 4219 | ID=Msa1462840;Name=Msa1462840 |
| tig0042674 | mRNA | 4219 | 6042 | 4219 | ID=Msa1462840-mRNA-1;Parent=Msa1462840;Name=Msa1462840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|607 |
| tig0042674 | exon | 4219 | 6042 | 4219 | ID=Msa1462840-mRNA-1:exon:23809;Parent=Msa1462840-mRNA-1 |
| tig0042674 | CDS | 4219 | 6042 | 4219 | ID=Msa1462840-mRNA-1:cds;Parent=Msa1462840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
