AlfalfaGEDB | Msa1036210

M. sativa cultivar zhongmu-4 / Msa1036210

KEGG: -
GO: -
PFAM: PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036210	XP_027338966.1	62.348	247	93	0	2	248	24	270	3.89e-109	329

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036210	sp\|I1M2U5\|NAMT1_SOYBN	55.061	247	110	1	2	248	11	256	3.04e-97	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036210	G7JBI7	60.729	247	97	0	2	248	13	259	4.13e-109	325

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142240	Msa1036210	0.801755	7.753238e-49	-8.615850e-47
Msa1036210	Msa1076470	0.816391	5.665844e-52	-8.615850e-47
Msa1036210	Msa1076480	0.820659	6.101366e-53	-8.615850e-47
Msa1036210	Msa1083410	0.809217	2.110574e-50	-8.615850e-47
Msa1036210	Msa1098560	0.812177	4.832948e-51	-8.615850e-47
Msa1036210	Msa1122660	0.839962	1.157478e-57	-8.615850e-47
Msa1036210	Msa1228210	0.821794	3.340881e-53	-8.615850e-47
Msa1036210	Msa1267200	0.824400	8.237961e-54	-8.615850e-47
Msa1036210	Msa1271280	0.814069	1.859130e-51	-8.615850e-47
Msa1036210	Msa1271300	0.826987	2.006109e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036210	MtrunA17_Chr3g0130061	60.729	247	97	0	2	248	13	259	4.97e-112	326
Msa1036210	MtrunA17_Chr3g0130011	60.729	247	97	0	2	248	13	259	1.96e-111	325
Msa1036210	MtrunA17_Chr2g0314271	54.065	246	112	1	3	248	11	255	2.65e-99	293
Msa1036210	MtrunA17_Chr7g0218181	36.122	263	137	7	6	252	26	273	2.69e-43	150
Msa1036210	MtrunA17_Chr7g0218131	35.317	252	157	3	6	252	26	276	1.69e-41	145
Msa1036210	MtrunA17_Chr3g0128011	35.686	255	156	5	3	252	72	323	1.01e-39	142
Msa1036210	MtrunA17_Chr7g0218211	34.524	252	159	3	6	252	25	275	1.25e-39	140
Msa1036210	MtrunA17_Chr7g0276411	32.400	250	161	3	9	252	21	268	1.44e-39	140
Msa1036210	MtrunA17_Chr8g0367441	33.200	250	159	3	9	252	36	283	2.47e-39	140
Msa1036210	MtrunA17_Chr8g0367451	32.000	250	162	3	9	252	35	282	1.34e-38	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036210	AT3G53140.1	50.996	251	119	1	2	248	10	260	1.46e-88	267
Msa1036210	AT5G54160.1	38.039	255	148	7	3	252	18	267	3.04e-44	153
Msa1036210	AT1G51990.1	36.923	195	118	2	62	252	74	267	7.99e-38	136
Msa1036210	AT1G51990.2	36.410	195	119	2	62	252	74	267	1.66e-36	132
Msa1036210	AT1G77520.1	31.102	254	162	5	10	252	35	286	3.99e-31	119
Msa1036210	AT1G33030.1	30.800	250	163	5	9	252	11	256	6.67e-25	101
Msa1036210	AT1G33030.2	30.894	246	160	5	9	248	11	252	9.85e-25	99.4
Msa1036210	AT1G33030.3	30.894	246	160	5	9	248	11	252	1.14e-24	99.8
Msa1036210	AT5G53810.1	33.065	248	150	9	18	252	39	283	5.36e-24	99.4
Msa1036210	AT1G21120.1	33.725	255	158	6	6	252	27	278	1.35e-23	98.2

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Find 133 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAATAAGATTATA+TGG	0.250414	7_1:+72454573	None:intergenic
AAAATCTCGGAAGCCGACAT+AGG	0.549653	7_1:+72456419	None:intergenic
AAACAGCTGGGTGTGGCTGC+TGG	0.376698	7_1:-72454728	Msa1036210:three_prime_UTR
AAACTAACCAATAGTTAATA+AGG	0.261463	7_1:-72454330	Msa1036210:three_prime_UTR
AAACTAGTATACCTGGGAGT+TGG	0.430030	7_1:+72455749	None:intergenic
AAACTTGTATGGATGTAAGA+AGG	0.552599	7_1:+72456601	None:intergenic
AAAGTTCTCACTTGCAGAGG+TGG	0.525549	7_1:-72456285	Msa1036210:CDS
AAATTATCCTTATTAACTAT+TGG	0.314472	7_1:+72454323	None:intergenic
AAATTCCCAAACATTAGCAA+GGG	0.640329	7_1:-72455811	Msa1036210:CDS
AACCATTCCGGAAGGTGAAT+GGG	0.395689	7_1:-72456017	Msa1036210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTGTATGGATGTAAGA+AGG	+	chr7_1:72454129-72454148	None:intergenic	30.0%
ATTTGAAAATGAGCAAAGCA+AGG	-	chr7_1:72454180-72454199	Msa1036210:three_prime_UTR	30.0%
CCTTTGTTGAAAATGGTATT+CGG	+	chr7_1:72454278-72454297	None:intergenic	30.0%
ACAACTGATAATTACTAACC+TGG	+	chr7_1:72454529-72454548	None:intergenic	30.0%
CATTTCTTTGCAGATTACAA+TGG	-	chr7_1:72454891-72454910	Msa1036210:three_prime_UTR	30.0%
TAAATTCCCAAACATTAGCA+AGG	-	chr7_1:72454915-72454934	Msa1036210:three_prime_UTR	30.0%
AAATTCCCAAACATTAGCAA+GGG	-	chr7_1:72454916-72454935	Msa1036210:three_prime_UTR	30.0%
AGACCCCTAAAAAAAAAAAG+CGG	+	chr7_1:72455430-72455449	None:intergenic	30.0%
CTTATACTTAAAAGTAGGGT+CGG	+	chr7_1:72455488-72455507	None:intergenic	30.0%
AATTAATATTCCACTTGCAG+TGG	-	chr7_1:72455763-72455782	Msa1036210:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	72454012	72456737	72454012	ID=Msa1036210;Name=Msa1036210
chr7_1	mRNA	72454012	72456737	72454012	ID=Msa1036210-mRNA-1;Parent=Msa1036210;Name=Msa1036210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=176\|1\|1\|1\|0.5\|0.66\|3\|1029\|255
chr7_1	exon	72454012	72455129	72454012	ID=Msa1036210-mRNA-1:exon:17671;Parent=Msa1036210-mRNA-1
chr7_1	exon	72455761	72456097	72455761	ID=Msa1036210-mRNA-1:exon:17670;Parent=Msa1036210-mRNA-1
chr7_1	exon	72456220	72456737	72456220	ID=Msa1036210-mRNA-1:exon:17669;Parent=Msa1036210-mRNA-1
chr7_1	five_prime_UTR	72456562	72456737	72456562	ID=Msa1036210-mRNA-1:five_prime_utr;Parent=Msa1036210-mRNA-1
chr7_1	CDS	72456220	72456561	72456220	ID=Msa1036210-mRNA-1:cds;Parent=Msa1036210-mRNA-1
chr7_1	CDS	72455761	72456097	72455761	ID=Msa1036210-mRNA-1:cds;Parent=Msa1036210-mRNA-1
chr7_1	CDS	72455041	72455129	72455041	ID=Msa1036210-mRNA-1:cds;Parent=Msa1036210-mRNA-1
chr7_1	three_prime_UTR	72454012	72455040	72454012	ID=Msa1036210-mRNA-1:three_prime_utr;Parent=Msa1036210-mRNA-1

Gene Sequence

>Msa1036210

ATGAGCAAAGCAAGGTTAGCAATAATGAATTTATCCCATCTAATGAGTGTCCCTTCTTCTCTAGTTGCCGTAATTGAACTAGATGTTCCGAATACCATTTTCAACAAAGGAAGCAACCTTCCTATGTCGGCTTCCGAGATTTTGGCAATTGTTCGCCCAAACGGAGGAGGGGAAGCAGATAACCTGGAACGTATGCTCAGGTTGTTAACGGCTTACGATATCTTTGAGGAGCACTTGATGAGTAATGGAGTTAGAAAGTTCTCACTTGCAGAGGTGGGTAAATCTCTTGCTGAAGATGAAGACGGTCTCTCTTATGCCCCTTACATGCTTCAACACCACCAGCATGCGTATATGAGGGCCTGGCCTCTCCTTAAGGACGTGGTTGAGGACCCATCCACAGAACCATTCCGGAAGGTGAATGGGGAACCAGCACATGACTTTTACGTAAAATATCCAGAACAAATGAAGTTGTTTAACAAAGCTTTTATTGGAATGACCATTCCATTTTTTAGAGAAGTTTTGGAATCATACGATGGGTTTCGTAGTGTGGAAACTTTAGTGGATGTCGGAGGCAGTACAGGCATTTCTTTGCAGATTACAATGGCTAAATTCCCAAACATTAGCAAGGGAATCAACTTTGATCTCCCCGAAATTGTTGCAAGTGCATCCCAACTCCCAGGCATAACCCATGTTGGTGGTGATGCCACTGAGTTTGTTCCTCGTGGAGACGCTATCCTGATAAAGGACAAAATTCATCCCACTCTCTAA

Protein sequence

>Msa1036210

MSKARLAIMNLSHLMSVPSSLVAVIELDVPNTIFNKGSNLPMSASEILAIVRPNGGGEADNLERMLRLLTAYDIFEEHLMSNGVRKFSLAEVGKSLAEDEDGLSYAPYMLQHHQHAYMRAWPLLKDVVEDPSTEPFRKVNGEPAHDFYVKYPEQMKLFNKAFIGMTIPFFREVLESYDGFRSVETLVDVGGSTGISLQITMAKFPNISKGINFDLPEIVASASQLPGITHVGGDATEFVPRGDAILIKDKIHPTL*