AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228210 MtrunA17_Chr8g0335011 88.155 515 44 1 1 515 1 498 0.0 929
Msa1228210 MtrunA17_Chr8g0334971 50.398 502 179 9 19 515 9 445 5.49e-163 469
Msa1228210 MtrunA17_Chr8g0335061 49.603 504 179 11 19 515 9 444 3.15e-159 460
Msa1228210 MtrunA17_Chr8g0334951 46.263 495 181 13 19 508 11 425 2.81e-134 395
Msa1228210 MtrunA17_Chr8g0334911 46.245 506 188 13 12 512 4 430 8.96e-133 392
Msa1228210 MtrunA17_Chr8g0335021 45.436 493 191 14 36 514 27 455 4.54e-128 381
Msa1228210 MtrunA17_Chr8g0335071 42.748 524 223 12 1 513 1 458 4.71e-123 368
Msa1228210 MtrunA17_Chr3g0118601 33.468 496 247 16 17 503 20 441 1.85e-64 216
Msa1228210 MtrunA17_Chr6g0452551 31.557 488 220 17 32 508 21 405 2.86e-62 209
Msa1228210 MtrunA17_Chr6g0452531 30.346 491 226 16 22 497 7 396 4.39e-60 203
Msa1228210 MtrunA17_Chr6g0452611 30.297 472 218 14 36 497 24 394 6.31e-58 197
Msa1228210 MtrunA17_Chr6g0452501 30.947 475 226 14 29 497 18 396 6.81e-57 195
Msa1228210 MtrunA17_Chr6g0452601 29.555 494 236 15 25 503 14 410 2.65e-56 194
Msa1228210 MtrunA17_Chr8g0334981 96.386 83 3 0 433 515 1 83 1.20e-52 173
Msa1228210 MtrunA17_Chr6g0457371 30.538 465 218 14 38 497 27 391 1.89e-52 183
Msa1228210 MtrunA17_Chr6g0452561 29.492 512 240 19 19 508 10 422 8.53e-52 182
Msa1228210 MtrunA17_Chr3g0138001 30.526 475 225 14 34 496 24 405 9.13e-51 181
Msa1228210 MtrunA17_Chr6g0452591 29.424 486 229 16 35 508 54 437 7.53e-49 174
Msa1228210 MtrunA17_Chr6g0452161 29.577 497 230 17 22 496 7 405 1.19e-48 173
Msa1228210 MtrunA17_Chr8g0335001 85.057 87 13 0 1 87 20 106 2.94e-45 154
Msa1228210 MtrunA17_Chr2g0297831 27.557 479 263 14 29 505 61 457 6.37e-44 162
Msa1228210 MtrunA17_Chr2g0300311 27.331 472 261 13 36 505 50 441 2.25e-42 157
Msa1228210 MtrunA17_Chr2g0296801 27.189 434 219 9 73 503 1 340 2.88e-38 143
Msa1228210 MtrunA17_Chr7g0265891 26.030 461 249 15 36 488 51 427 6.38e-36 139
Msa1228210 MtrunA17_Chr5g0439721 25.684 475 272 10 37 508 33 429 2.78e-34 134
Msa1228210 MtrunA17_Chr5g0401791 27.311 476 258 14 32 488 97 503 2.21e-32 130
Msa1228210 MtrunA17_Chr6g0452571 28.889 405 181 14 109 503 33 340 4.45e-32 126
Msa1228210 MtrunA17_Chr5g0439641 25.212 472 276 12 37 500 33 435 1.15e-31 127
Msa1228210 MtrunA17_Chr7g0218171 34.211 190 101 3 316 503 122 289 1.10e-25 107
Msa1228210 MtrunA17_Chr7g0238231 24.025 487 295 14 46 503 39 479 1.27e-23 103
Msa1228210 MtrunA17_Chr6g0452541 30.841 214 119 4 289 496 29 219 9.83e-22 94.4
Msa1228210 MtrunA17_Chr7g0238101 22.287 516 275 16 38 503 29 468 1.46e-21 97.8
Msa1228210 MtrunA17_Chr7g0238211 30.814 172 99 2 318 488 5 157 9.28e-20 87.0
Msa1228210 MtrunA17_Chr7g0238241 22.774 483 272 16 38 488 28 441 4.77e-18 86.7
Msa1228210 MtrunA17_Chr5g0439661 30.939 181 103 4 37 213 29 191 5.83e-18 82.4
Msa1228210 MtrunA17_Chr7g0238091 28.877 187 113 2 318 503 41 208 2.99e-17 80.9
Msa1228210 MtrunA17_Chr7g0238171 24.852 507 303 17 40 503 37 508 5.49e-17 84.0
Msa1228210 MtrunA17_Chr7g0238131 23.191 470 283 13 58 507 1 412 1.01e-16 82.4
Msa1228210 MtrunA17_Chr7g0238081 30.409 171 99 3 318 487 5 156 1.01e-16 78.2
Msa1228210 MtrunA17_Chr7g0238191 23.191 470 259 14 38 488 27 413 8.69e-16 79.7
Msa1228210 MtrunA17_Chr7g0238051 32.394 142 95 1 363 503 213 354 1.83e-15 78.2
Msa1228210 MtrunA17_Chr5g0440401 24.747 198 125 2 316 512 41 215 2.67e-15 75.1
Msa1228210 MtrunA17_Chr4g0002861 31.176 170 104 4 36 205 42 198 4.50e-15 77.8
Msa1228210 MtrunA17_Chr4g0002861 27.841 176 103 4 315 489 376 528 5.11e-11 65.1
Msa1228210 MtrunA17_Chr7g0238511 31.333 150 92 3 367 515 288 427 5.04e-15 77.4
Msa1228210 MtrunA17_Chr5g0439681 28.108 185 107 4 318 500 136 296 5.59e-15 75.9
Msa1228210 MtrunA17_Chr7g0238111 33.803 142 90 3 367 505 292 432 7.41e-15 76.6
Msa1228210 MtrunA17_Chr7g0232521 32.520 123 82 1 367 488 72 194 2.28e-14 72.4
Msa1228210 MtrunA17_Chr2g0297821 26.984 189 118 3 319 505 4 174 2.78e-14 71.2
Msa1228210 MtrunA17_Chr4g0002911 31.953 169 101 4 37 205 43 197 5.62e-14 74.3
Msa1228210 MtrunA17_Chr4g0002911 29.851 134 93 1 373 505 409 542 2.84e-11 65.9
Msa1228210 MtrunA17_Chr7g0242091 32.386 176 107 6 36 210 54 218 5.77e-14 74.3
Msa1228210 MtrunA17_Chr4g0002901 27.895 190 124 4 36 225 42 218 8.00e-14 73.9
Msa1228210 MtrunA17_Chr4g0002901 29.104 134 94 1 373 505 411 544 6.71e-12 67.8
Msa1228210 MtrunA17_Chr8g0354591 31.788 151 89 2 367 503 299 449 1.85e-13 72.4
Msa1228210 MtrunA17_Chr7g0238181 32.639 144 84 4 367 509 215 346 2.28e-13 71.6
Msa1228210 MtrunA17_Chr7g0220521 28.788 198 126 6 4 200 9 192 2.06e-12 69.7
Msa1228210 MtrunA17_Chr7g0220521 30.075 133 91 2 371 502 399 530 2.37e-11 66.2
Msa1228210 MtrunA17_Chr7g0242011 27.111 225 139 9 2 218 26 233 3.65e-12 68.6
Msa1228210 MtrunA17_Chr7g0238281 31.288 163 99 4 327 488 7 157 4.10e-12 65.1
Msa1228210 MtrunA17_Chr7g0238141 24.249 466 248 18 46 488 38 421 5.90e-12 67.8
Msa1228210 MtrunA17_Chr3g0107251 27.320 194 122 6 37 230 31 205 1.76e-11 66.2
Msa1228210 MtrunA17_Chr6g0452511 41.270 63 37 0 389 451 1 63 3.38e-11 59.3
Msa1228210 MtrunA17_Chr7g0241951 27.273 176 114 3 37 209 29 193 5.20e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228210 AT2G44930.1 30.162 494 239 9 36 508 84 492 6.40e-56 195
Msa1228210 AT3G60470.1 29.870 539 269 15 38 508 34 531 4.87e-55 194
Msa1228210 AT2G28580.6 28.921 491 244 10 36 508 41 444 4.07e-52 184
Msa1228210 AT2G28580.1 28.921 491 244 10 36 508 109 512 1.02e-51 184
Msa1228210 AT2G28580.2 28.803 493 242 11 36 508 123 526 1.19e-51 184
Msa1228210 AT2G28580.5 29.167 480 240 9 36 508 109 495 3.28e-51 182
Msa1228210 AT2G28580.4 29.046 482 238 10 36 508 123 509 3.67e-51 183
Msa1228210 AT4G31980.1 27.660 470 231 12 36 496 293 662 9.04e-47 173
Msa1228210 AT5G11290.2 25.519 482 265 15 24 503 22 411 4.63e-40 150
Msa1228210 AT1G67150.4 27.178 482 246 12 35 503 5 394 3.90e-39 147
Msa1228210 AT1G67150.1 27.178 482 246 12 35 503 5 394 3.90e-39 147
Msa1228210 AT2G36430.1 25.055 455 259 11 36 488 45 419 1.17e-38 147
Msa1228210 AT3G50150.1 27.754 472 269 11 38 505 92 495 1.45e-38 147
Msa1228210 AT1G67150.2 26.955 486 246 12 35 503 5 398 1.57e-38 145
Msa1228210 AT3G50170.1 25.819 519 304 13 2 503 69 523 1.10e-37 145
Msa1228210 AT3G47250.3 26.176 489 273 13 27 503 52 464 9.48e-37 142
Msa1228210 AT3G47250.2 26.176 489 273 13 27 503 52 464 9.48e-37 142
Msa1228210 AT3G47250.1 26.176 489 273 13 27 503 52 464 9.48e-37 142
Msa1228210 AT3G47210.1 28.166 458 220 12 25 467 82 445 1.83e-35 138
Msa1228210 AT3G50140.1 26.273 491 259 14 38 505 115 525 3.13e-34 136
Msa1228210 AT3G50120.1 26.383 470 283 12 38 503 105 515 3.04e-33 133
Msa1228210 AT2G28580.3 27.488 422 197 11 36 437 123 455 6.37e-33 131
Msa1228210 AT3G50130.1 26.432 454 270 12 38 488 141 533 3.60e-31 127
Msa1228210 AT3G50180.1 25.667 487 259 16 32 503 174 572 8.96e-29 120
Msa1228210 AT3G47200.1 25.261 479 262 13 25 488 35 432 1.68e-27 115
Msa1228210 AT3G47200.2 25.261 479 262 13 25 488 35 432 1.68e-27 115
Msa1228210 AT5G22540.1 23.226 465 257 13 36 488 31 407 2.66e-26 111
Msa1228210 AT3G44710.1 24.280 486 306 14 36 503 47 488 4.14e-25 108
Msa1228210 AT3G50190.1 23.789 475 258 13 38 503 98 477 6.98e-23 102
Msa1228210 AT5G11290.1 23.326 433 239 15 73 503 1 342 1.40e-22 99.8
Msa1228210 AT1G65985.1 34.054 185 79 4 38 204 16 175 4.00e-20 93.6
Msa1228210 AT1G65985.1 37.903 124 76 1 368 490 304 427 1.55e-16 82.4
Msa1228210 AT1G65985.2 34.054 185 79 4 38 204 16 175 4.00e-20 93.6
Msa1228210 AT1G65985.2 37.903 124 76 1 368 490 304 427 1.55e-16 82.4
Msa1228210 AT3G50170.2 29.439 214 121 5 2 205 69 262 1.33e-19 91.7
Msa1228210 AT5G22550.2 31.579 209 119 8 2 206 9 197 1.74e-19 91.7
Msa1228210 AT3G50160.1 31.285 179 103 4 32 210 100 258 1.87e-18 88.6
Msa1228210 AT3G50160.1 27.679 224 133 3 286 503 285 485 8.72e-17 83.6
Msa1228210 AT1G67150.3 29.947 187 107 3 318 503 188 351 2.30e-18 87.4
Msa1228210 AT1G67150.3 31.694 183 94 5 35 207 5 166 3.21e-15 77.8
Msa1228210 AT3G50150.2 31.429 175 99 4 38 210 92 247 9.47e-17 83.2
Msa1228210 AT3G50140.2 30.952 168 96 4 38 205 115 262 6.82e-16 80.1
Msa1228210 AT5G22560.1 26.882 186 103 4 36 207 47 213 3.17e-15 78.6
Msa1228210 AT3G50190.4 27.717 184 110 5 38 221 98 258 6.30e-13 70.9
Msa1228210 AT3G50190.3 27.717 184 110 5 38 221 98 258 6.30e-13 70.9
Msa1228210 AT3G50190.2 27.717 184 110 5 38 221 98 258 7.39e-13 70.5
Msa1228210 AT3G02645.1 32.203 118 79 1 373 489 380 497 8.17e-13 71.2
Msa1228210 AT3G44700.1 26.389 144 99 4 5 143 16 157 8.55e-11 62.4

Find 56 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8_2:+3699818 Msa1228210:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8_2:-3699597 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8_2:-3699373 None:intergenic
ACCATTTCAAAGCGCGTCTA+AGG 0.318480 8_2:+3699518 Msa1228210:CDS
ACGTGAAACTAAGCTTGTTT+TGG 0.326591 8_2:+3699138 Msa1228210:CDS
GAAACATAATTGCATATATA+AGG 0.329067 8_2:-3699625 None:intergenic
GACTTTGTAGTTCTTGATCA+TGG 0.348123 8_2:-3698708 None:intergenic
TCTTTATTTCCAAGGTGAAT+TGG 0.350401 8_2:-3698608 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.353279 8_2:-3699286 None:intergenic
CTGCTAAACTTAACTCTTCA+AGG 0.360388 8_2:-3698505 None:intergenic
TTACCTTCCAGCTGATTTAA+CGG 0.361070 8_2:+3699318 Msa1228210:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8_2:+3699290 Msa1228210:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8_2:+3698584 Msa1228210:CDS
GTAACAAAGTTAATAGATTC+TGG 0.396787 8_2:+3699382 Msa1228210:CDS
AAGAAACCGTTCATGGAAAT+CGG 0.400354 8_2:+3698853 Msa1228210:CDS
GAAGTGGCAGTGCTTGTTAA+TGG 0.401978 8_2:+3699736 Msa1228210:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.406927 8_2:-3698667 None:intergenic
TCCTTAGACGCGCTTTGAAA+TGG 0.415205 8_2:-3699519 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.429548 8_2:+3699672 Msa1228210:CDS
TCTAAATCCGTTAAATCAGC+TGG 0.442093 8_2:-3699325 None:intergenic
AGCAATAACCATAGGTTTCA+AGG 0.443493 8_2:+3699262 Msa1228210:CDS
CAGAGAAAATAACTCAGAAA+TGG 0.447228 8_2:-3699463 None:intergenic
AATCAACATCAACTTGTGTA+TGG 0.449318 8_2:-3699666 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8_2:+3698457 Msa1228210:CDS
GTTTAGGACCTTGAAACCTA+TGG 0.455366 8_2:-3699270 None:intergenic
AGAGCTAGTTCTACTTTGGT+TGG 0.457619 8_2:+3699889 Msa1228210:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8_2:+3699702 Msa1228210:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8_2:-3698587 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8_2:+3699885 Msa1228210:CDS
AGTGGCTTAATTGGTGATGT+TGG 0.493716 8_2:+3699193 Msa1228210:CDS
GTTGAAGTTCTTTATTTCCA+AGG 0.495312 8_2:-3698616 None:intergenic
TCTAAGGATTCCGCAGTTGA+AGG 0.499213 8_2:+3699534 Msa1228210:CDS
AGCAGATTGTAGCATCTACA+AGG 0.504878 8_2:+3698523 Msa1228210:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8_2:+3698939 Msa1228210:CDS
TTGATACTGACATTGTTCTA+GGG 0.522905 8_2:-3699596 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8_2:-3698909 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8_2:+3699703 Msa1228210:CDS
TTAACGGATTTAGAAAAGAG+TGG 0.543465 8_2:+3699334 Msa1228210:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8_2:-3699848 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8_2:-3699499 None:intergenic
TCAATTGGTCCAATTCACCT+TGG 0.558480 8_2:+3698599 Msa1228210:CDS
TTAATTGGTGATGTTGGTAG+TGG 0.564871 8_2:+3699199 Msa1228210:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8_2:-3699843 None:intergenic
ATGTATCCGATTTCCATGAA+CGG 0.580945 8_2:-3698859 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8_2:+3699756 Msa1228210:CDS
AATCTATGAGCAATAACCAT+AGG 0.583238 8_2:+3699254 Msa1228210:CDS
GACATTGTTCTAGGGCAATG+AGG 0.593451 8_2:-3699588 None:intergenic
GGCTCAGCAAAAGCATCACA+AGG 0.605591 8_2:+3698960 Msa1228210:CDS
TGTTGATTTGTTGGTCGAGA+AGG 0.609668 8_2:+3699681 Msa1228210:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8_2:+3699846 Msa1228210:CDS
AATCCGTTAAATCAGCTGGA+AGG 0.622325 8_2:-3699321 None:intergenic
AATGGGAAGTGATAAAGAAG+TGG 0.638138 8_2:+3699720 Msa1228210:CDS
GAATATTTGGAACCGTACCA+TGG 0.643141 8_2:+3699831 Msa1228210:CDS
GTGTGATCAACCTTCAACTG+CGG 0.710202 8_2:-3699544 None:intergenic
GCTCAGCAAAAGCATCACAA+GGG 0.717992 8_2:+3698961 Msa1228210:CDS
ACCGTACCATGGCTGCATTG+TGG 0.722473 8_2:+3699842 Msa1228210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8_2:3698785-3698804 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8_2:3698786-3698805 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8_2:3699175-3699194 Msa1228210:CDS 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8_2:3699236-3699255 None:intergenic 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8_2:3699628-3699647 None:intergenic 20.0%
!! ATAAGCATTATCAGAATATT+TGG + chr8_2:3699818-3699837 Msa1228210:CDS 20.0%
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8_2:3698785-3698804 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8_2:3698786-3698805 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8_2:3699175-3699194 Msa1228210:CDS 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8_2:3699236-3699255 None:intergenic 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8_2:3699628-3699647 None:intergenic 20.0%
!! ATAAGCATTATCAGAATATT+TGG + chr8_2:3699818-3699837 Msa1228210:CDS 20.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8_2:3698457-3698476 Msa1228210:CDS 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8_2:3698787-3698806 Msa1228210:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8_2:3698802-3698821 Msa1228210:CDS 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8_2:3698912-3698931 None:intergenic 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8_2:3699075-3699094 None:intergenic 25.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8_2:3699289-3699308 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8_2:3699290-3699309 Msa1228210:CDS 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8_2:3699376-3699395 None:intergenic 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8_2:3699382-3699401 Msa1228210:CDS 25.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8_2:3698457-3698476 Msa1228210:CDS 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8_2:3698787-3698806 Msa1228210:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8_2:3698802-3698821 Msa1228210:CDS 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8_2:3698912-3698931 None:intergenic 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8_2:3699075-3699094 None:intergenic 25.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8_2:3699289-3699308 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8_2:3699290-3699309 Msa1228210:CDS 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8_2:3699376-3699395 None:intergenic 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8_2:3699382-3699401 Msa1228210:CDS 25.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8_2:3698562-3698581 None:intergenic 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8_2:3698584-3698603 Msa1228210:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8_2:3698611-3698630 None:intergenic 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8_2:3698619-3698638 None:intergenic 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8_2:3698641-3698660 None:intergenic 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8_2:3698639-3698658 Msa1228210:CDS 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8_2:3698846-3698865 Msa1228210:CDS 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8_2:3698939-3698958 Msa1228210:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8_2:3699013-3699032 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8_2:3699184-3699203 Msa1228210:CDS 30.0%
AATCTATGAGCAATAACCAT+AGG + chr8_2:3699254-3699273 Msa1228210:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8_2:3699334-3699353 Msa1228210:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8_2:3699466-3699485 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8_2:3699502-3699521 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8_2:3699563-3699582 Msa1228210:CDS 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8_2:3699599-3699618 None:intergenic 30.0%
AATCAACATCAACTTGTGTA+TGG - chr8_2:3699669-3699688 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8_2:3699672-3699691 Msa1228210:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8_2:3698562-3698581 None:intergenic 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8_2:3698584-3698603 Msa1228210:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8_2:3698611-3698630 None:intergenic 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8_2:3698619-3698638 None:intergenic 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8_2:3698641-3698660 None:intergenic 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8_2:3698639-3698658 Msa1228210:CDS 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8_2:3698846-3698865 Msa1228210:CDS 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8_2:3698939-3698958 Msa1228210:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8_2:3699013-3699032 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8_2:3699184-3699203 Msa1228210:CDS 30.0%
AATCTATGAGCAATAACCAT+AGG + chr8_2:3699254-3699273 Msa1228210:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8_2:3699334-3699353 Msa1228210:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8_2:3699466-3699485 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8_2:3699502-3699521 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8_2:3699563-3699582 Msa1228210:CDS 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8_2:3699599-3699618 None:intergenic 30.0%
AATCAACATCAACTTGTGTA+TGG - chr8_2:3699669-3699688 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8_2:3699672-3699691 Msa1228210:CDS 30.0%
CTGCTAAACTTAACTCTTCA+AGG - chr8_2:3698508-3698527 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8_2:3698590-3698609 None:intergenic 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8_2:3698670-3698689 None:intergenic 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8_2:3698711-3698730 None:intergenic 35.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8_2:3698853-3698872 Msa1228210:CDS 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8_2:3698862-3698881 None:intergenic 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8_2:3699051-3699070 None:intergenic 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8_2:3699052-3699071 None:intergenic 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8_2:3699138-3699157 Msa1228210:CDS 35.0%
!! TTAATTGGTGATGTTGGTAG+TGG + chr8_2:3699199-3699218 Msa1228210:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8_2:3699262-3699281 Msa1228210:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8_2:3699318-3699337 Msa1228210:CDS 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8_2:3699328-3699347 None:intergenic 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8_2:3699405-3699424 Msa1228210:CDS 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8_2:3699406-3699425 Msa1228210:CDS 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8_2:3699407-3699426 Msa1228210:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8_2:3699469-3699488 Msa1228210:CDS 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8_2:3699600-3699619 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8_2:3699703-3699722 Msa1228210:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + chr8_2:3699720-3699739 Msa1228210:CDS 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8_2:3699756-3699775 Msa1228210:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8_2:3699866-3699885 Msa1228210:CDS 35.0%
CTGCTAAACTTAACTCTTCA+AGG - chr8_2:3698508-3698527 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8_2:3698590-3698609 None:intergenic 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8_2:3698670-3698689 None:intergenic 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8_2:3698711-3698730 None:intergenic 35.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8_2:3698853-3698872 Msa1228210:CDS 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8_2:3698862-3698881 None:intergenic 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8_2:3699051-3699070 None:intergenic 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8_2:3699052-3699071 None:intergenic 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8_2:3699138-3699157 Msa1228210:CDS 35.0%
!! TTAATTGGTGATGTTGGTAG+TGG + chr8_2:3699199-3699218 Msa1228210:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8_2:3699262-3699281 Msa1228210:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8_2:3699318-3699337 Msa1228210:CDS 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8_2:3699328-3699347 None:intergenic 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8_2:3699405-3699424 Msa1228210:CDS 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8_2:3699406-3699425 Msa1228210:CDS 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8_2:3699407-3699426 Msa1228210:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8_2:3699469-3699488 Msa1228210:CDS 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8_2:3699600-3699619 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8_2:3699703-3699722 Msa1228210:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + chr8_2:3699720-3699739 Msa1228210:CDS 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8_2:3699756-3699775 Msa1228210:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8_2:3699866-3699885 Msa1228210:CDS 35.0%
AGCAGATTGTAGCATCTACA+AGG + chr8_2:3698523-3698542 Msa1228210:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8_2:3698551-3698570 None:intergenic 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8_2:3698599-3698618 Msa1228210:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8_2:3698820-3698839 Msa1228210:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8_2:3698976-3698995 Msa1228210:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8_2:3699193-3699212 Msa1228210:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8_2:3699273-3699292 None:intergenic 40.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8_2:3699324-3699343 None:intergenic 40.0%
!! TGTTGATTTGTTGGTCGAGA+AGG + chr8_2:3699681-3699700 Msa1228210:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8_2:3699702-3699721 Msa1228210:CDS 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8_2:3699831-3699850 Msa1228210:CDS 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8_2:3699885-3699904 Msa1228210:CDS 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8_2:3699889-3699908 Msa1228210:CDS 40.0%
AGCAGATTGTAGCATCTACA+AGG + chr8_2:3698523-3698542 Msa1228210:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8_2:3698551-3698570 None:intergenic 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8_2:3698599-3698618 Msa1228210:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8_2:3698820-3698839 Msa1228210:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8_2:3698976-3698995 Msa1228210:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8_2:3699193-3699212 Msa1228210:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8_2:3699273-3699292 None:intergenic 40.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8_2:3699324-3699343 None:intergenic 40.0%
!! TGTTGATTTGTTGGTCGAGA+AGG + chr8_2:3699681-3699700 Msa1228210:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8_2:3699702-3699721 Msa1228210:CDS 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8_2:3699831-3699850 Msa1228210:CDS 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8_2:3699885-3699904 Msa1228210:CDS 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8_2:3699889-3699908 Msa1228210:CDS 40.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8_2:3698961-3698980 Msa1228210:CDS 45.0%
ACCATTTCAAAGCGCGTCTA+AGG + chr8_2:3699518-3699537 Msa1228210:CDS 45.0%
!! TCCTTAGACGCGCTTTGAAA+TGG - chr8_2:3699522-3699541 None:intergenic 45.0%
TCTAAGGATTCCGCAGTTGA+AGG + chr8_2:3699534-3699553 Msa1228210:CDS 45.0%
GTGTGATCAACCTTCAACTG+CGG - chr8_2:3699547-3699566 None:intergenic 45.0%
!! GACATTGTTCTAGGGCAATG+AGG - chr8_2:3699591-3699610 None:intergenic 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + chr8_2:3699736-3699755 Msa1228210:CDS 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8_2:3698961-3698980 Msa1228210:CDS 45.0%
ACCATTTCAAAGCGCGTCTA+AGG + chr8_2:3699518-3699537 Msa1228210:CDS 45.0%
!! TCCTTAGACGCGCTTTGAAA+TGG - chr8_2:3699522-3699541 None:intergenic 45.0%
TCTAAGGATTCCGCAGTTGA+AGG + chr8_2:3699534-3699553 Msa1228210:CDS 45.0%
GTGTGATCAACCTTCAACTG+CGG - chr8_2:3699547-3699566 None:intergenic 45.0%
!! GACATTGTTCTAGGGCAATG+AGG - chr8_2:3699591-3699610 None:intergenic 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + chr8_2:3699736-3699755 Msa1228210:CDS 45.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8_2:3698960-3698979 Msa1228210:CDS 50.0%
ACCACAATGCAGCCATGGTA+CGG - chr8_2:3699846-3699865 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8_2:3699846-3699865 Msa1228210:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8_2:3698960-3698979 Msa1228210:CDS 50.0%
ACCACAATGCAGCCATGGTA+CGG - chr8_2:3699846-3699865 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8_2:3699846-3699865 Msa1228210:CDS 50.0%
ACCGTACCATGGCTGCATTG+TGG + chr8_2:3699842-3699861 Msa1228210:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8_2:3699851-3699870 None:intergenic 55.0%
ACCGTACCATGGCTGCATTG+TGG + chr8_2:3699842-3699861 Msa1228210:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8_2:3699851-3699870 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3698425 3699972 3698425 ID=Msa1228210;Name=Msa1228210
chr8_2 mRNA 3698425 3699972 3698425 ID=Msa1228210-mRNA-1;Parent=Msa1228210;Name=Msa1228210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|515
chr8_2 exon 3698425 3699972 3698425 ID=Msa1228210-mRNA-1:exon:1160;Parent=Msa1228210-mRNA-1
chr8_2 CDS 3698425 3699972 3698425 ID=Msa1228210-mRNA-1:cds;Parent=Msa1228210-mRNA-1
Gene Sequence

>Msa1228210

ATGGCACATGCTAATACTTCTGTTGATGCTTTATCTGAAACTGAATATGAAATGGTGAAACACATCATTGACGTTGAAGTCCTTGAAGAGTTAAGTTTAGCAGATTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAATAAAGAACTTCAACCAATGCAACAACACAAAAAAAGGTATTTCCATTTCTTCTATGAGCGTCTATCTCAATTCAATCAACAATCCATGATCAAGAACTACAAAGTCTATCTTGAAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCAACATAAGCAAAGAAAAATTTGTGGAAACAATTTTGTTGGATGCTGTTTTCATCATGGAGCTTTTGTTAAGAAACCGTTCATGGAAATCGGATACATCAAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAGTGATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCACAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTTTGTGCTGATGAATCTTTACGATACTGTCGTCCCTAACGACGACAAAAAAGAAGACCATAAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGACACTCAGAAATCGTCATCACGTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCTTAATTGGTGATGTTGGTAGTGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAATAACCATAGGTTTCAAGGTCCTAAACATTTCACTGATTTGATAAGGTTTTTTTACCTTCCAGCTGATTTAACGGATTTAGAAAAGAGTGGTTGTTCTCATACTTTTCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTGCTAGAAATAACATTTGAGAAGAAACCATTTCTGAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCGCGTCTAAGGATTCCGCAGTTGAAGGTTGATCACACAACAGAATGTGTTTTAAGGAACCTCATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTCGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACTATGATATTATTAATGAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGAATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCTAGAATTCTCTTCTAA

Protein sequence

>Msa1228210

MAHANTSVDALSETEYEMVKHIIDVEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGNKELQPMQQHKKRYFHFFYERLSQFNQQSMIKNYKVYLENKEQEIRKCYAEKFPNISKEKFVETILLDAVFIMELLLRNRSWKSDTSKHEHEYKQSKSFRLKHSDDYILTQAWLSKSITRDLILLENQIPFFVLMNLYDTVVPNDDKKEDHKSFLDLALEYFAFYDTQKSSSRETKLVLDKNQTKKYYFVSGLIGDVGSGNSVSKKKHSDKSMSNNHRFQGPKHFTDLIRFFYLPADLTDLEKSGCSHTFPRTVTKLIDSGVSFEKVVGRRLLEITFEKKPFLSYFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYYDIINELNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLARILF*