Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076480 | XP_027361665.1 | 62.838 | 148 | 54 | 1 | 1 | 148 | 223 | 369 | 6.33e-67 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076480 | sp|I1M2U5|NAMT1_SOYBN | 54.054 | 148 | 67 | 1 | 1 | 148 | 209 | 355 | 6.10e-57 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076480 | A0A445B558 | 60.135 | 148 | 58 | 1 | 1 | 148 | 220 | 366 | 3.38e-63 | 207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090040 | Msa1076480 | -0.800685 | 1.283488e-48 | -8.615850e-47 |
| Msa0719490 | Msa1076480 | -0.808550 | 2.930911e-50 | -8.615850e-47 |
| Msa0826650 | Msa1076480 | 0.800950 | 1.133256e-48 | -8.615850e-47 |
| Msa0142240 | Msa1076480 | 0.808775 | 2.624496e-50 | -8.615850e-47 |
| Msa0201330 | Msa1076480 | 0.836282 | 1.025415e-56 | -8.615850e-47 |
| Msa0369360 | Msa1076480 | 0.807041 | 6.133560e-50 | -8.615850e-47 |
| Msa0416800 | Msa1076480 | 0.804564 | 2.033354e-49 | -8.615850e-47 |
| Msa0463460 | Msa1076480 | 0.812794 | 3.544166e-51 | -8.615850e-47 |
| Msa1036210 | Msa1076480 | 0.820659 | 6.101366e-53 | -8.615850e-47 |
| Msa1076450 | Msa1076480 | 0.858286 | 9.143976e-63 | -8.615850e-47 |
| Msa1076460 | Msa1076480 | 0.935419 | 8.739563e-97 | -8.615850e-47 |
| Msa1076470 | Msa1076480 | 0.893347 | 6.838695e-75 | -8.615850e-47 |
| Msa1076480 | Msa1076680 | 0.805747 | 1.149872e-49 | -8.615850e-47 |
| Msa1076480 | Msa1083410 | 0.837904 | 3.946457e-57 | -8.615850e-47 |
| Msa1076480 | Msa1098560 | 0.801098 | 1.056859e-48 | -8.615850e-47 |
| Msa1076480 | Msa1122660 | 0.888953 | 3.734903e-73 | -8.615850e-47 |
| Msa1076480 | Msa1128160 | 0.811985 | 5.322060e-51 | -8.615850e-47 |
| Msa1076480 | Msa1139240 | 0.816576 | 5.150078e-52 | -8.615850e-47 |
| Msa1076480 | Msa1165360 | 0.811283 | 7.565117e-51 | -8.615850e-47 |
| Msa1076480 | Msa1177060 | 0.806051 | 9.925353e-50 | -8.615850e-47 |
| Msa1076480 | Msa1188420 | 0.804449 | 2.148328e-49 | -8.615850e-47 |
| Msa1076480 | Msa1228210 | 0.816355 | 5.772791e-52 | -8.615850e-47 |
| Msa1076480 | Msa1267200 | 0.816294 | 5.954503e-52 | -8.615850e-47 |
| Msa1076480 | Msa1271280 | 0.833861 | 4.182258e-56 | -8.615850e-47 |
| Msa1076480 | Msa1371080 | -0.826956 | 2.041218e-54 | -8.615850e-47 |
| Msa1076480 | Msa1438270 | 0.812956 | 3.264953e-51 | -8.615850e-47 |
| Msa1076480 | Msa1454290 | -0.806032 | 1.001672e-49 | -8.615850e-47 |
| Msa0243910 | Msa1076480 | 0.834637 | 2.671109e-56 | -8.615850e-47 |
| Msa0243930 | Msa1076480 | 0.812257 | 4.644048e-51 | -8.615850e-47 |
| Msa0282590 | Msa1076480 | 0.804571 | 2.026783e-49 | -8.615850e-47 |
| Msa0509020 | Msa1076480 | 0.814346 | 1.614725e-51 | -8.615850e-47 |
| Msa0557680 | Msa1076480 | 0.800178 | 1.628133e-48 | -8.615850e-47 |
| Msa0591780 | Msa1076480 | 0.802758 | 4.818920e-49 | -8.615850e-47 |
| Msa0847390 | Msa1076480 | 0.801131 | 1.040416e-48 | -8.615850e-47 |
| Msa0864690 | Msa1076480 | 0.802216 | 6.233583e-49 | -8.615850e-47 |
| Msa0886660 | Msa1076480 | 0.804855 | 1.767753e-49 | -8.615850e-47 |
| Msa0921630 | Msa1076480 | 0.806844 | 6.752409e-50 | -8.615850e-47 |
| Msa0935370 | Msa1076480 | 0.803269 | 3.777704e-49 | -8.615850e-47 |
| Msa0951720 | Msa1076480 | 0.805649 | 1.205595e-49 | -8.615850e-47 |
| Msa0968320 | Msa1076480 | -0.814497 | 1.494702e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076480 | MtrunA17_Chr3g0130061 | 58.784 | 148 | 60 | 1 | 1 | 148 | 212 | 358 | 4.17e-65 | 202 |
| Msa1076480 | MtrunA17_Chr3g0130011 | 57.432 | 148 | 62 | 1 | 1 | 148 | 212 | 358 | 8.47e-62 | 193 |
| Msa1076480 | MtrunA17_Chr2g0314271 | 50.000 | 148 | 73 | 1 | 1 | 148 | 208 | 354 | 5.90e-55 | 176 |
| Msa1076480 | MtrunA17_Chr1g0163611 | 45.033 | 151 | 75 | 5 | 1 | 148 | 225 | 370 | 7.40e-34 | 121 |
| Msa1076480 | MtrunA17_Chr1g0163601 | 45.714 | 140 | 70 | 4 | 1 | 139 | 225 | 359 | 9.83e-34 | 121 |
| Msa1076480 | MtrunA17_Chr1g0163621 | 45.455 | 132 | 68 | 3 | 1 | 132 | 239 | 366 | 4.40e-33 | 120 |
| Msa1076480 | MtrunA17_Chr2g0307521 | 45.926 | 135 | 67 | 4 | 1 | 134 | 219 | 348 | 3.57e-32 | 117 |
| Msa1076480 | MtrunA17_Chr5g0448091 | 39.865 | 148 | 86 | 3 | 1 | 148 | 219 | 363 | 7.82e-31 | 113 |
| Msa1076480 | MtrunA17_Chr7g0218271 | 44.444 | 135 | 69 | 4 | 1 | 134 | 231 | 360 | 6.35e-30 | 111 |
| Msa1076480 | MtrunA17_Chr3g0128011 | 38.194 | 144 | 85 | 4 | 1 | 144 | 273 | 412 | 7.13e-30 | 112 |
| Msa1076480 | MtrunA17_Chr7g0218301 | 44.697 | 132 | 67 | 4 | 1 | 131 | 231 | 357 | 1.33e-29 | 110 |
| Msa1076480 | MtrunA17_Chr7g0276401 | 37.415 | 147 | 89 | 3 | 2 | 148 | 232 | 375 | 8.26e-29 | 108 |
| Msa1076480 | MtrunA17_Chr8g0345851 | 38.235 | 136 | 79 | 4 | 2 | 135 | 147 | 279 | 3.23e-28 | 105 |
| Msa1076480 | MtrunA17_Chr1g0200491 | 41.667 | 132 | 73 | 3 | 1 | 132 | 228 | 355 | 1.30e-27 | 105 |
| Msa1076480 | MtrunA17_Chr8g0367441 | 42.188 | 128 | 71 | 3 | 2 | 129 | 234 | 358 | 3.77e-27 | 103 |
| Msa1076480 | MtrunA17_Chr7g0218181 | 40.602 | 133 | 73 | 4 | 1 | 132 | 223 | 350 | 7.63e-27 | 103 |
| Msa1076480 | MtrunA17_Chr3g0085201 | 38.926 | 149 | 82 | 4 | 1 | 145 | 214 | 357 | 1.18e-26 | 102 |
| Msa1076480 | MtrunA17_Chr7g0276411 | 41.085 | 129 | 73 | 3 | 2 | 130 | 219 | 344 | 2.10e-26 | 101 |
| Msa1076480 | MtrunA17_Chr7g0218131 | 39.259 | 135 | 76 | 4 | 1 | 134 | 226 | 355 | 5.56e-26 | 100 |
| Msa1076480 | MtrunA17_Chr7g0218211 | 39.259 | 135 | 76 | 4 | 1 | 134 | 225 | 354 | 2.30e-25 | 99.0 |
| Msa1076480 | MtrunA17_Chr8g0367491 | 37.209 | 129 | 78 | 3 | 2 | 130 | 233 | 358 | 4.46e-25 | 98.6 |
| Msa1076480 | MtrunA17_Chr7g0218261 | 39.552 | 134 | 77 | 3 | 1 | 134 | 224 | 353 | 5.91e-25 | 98.2 |
| Msa1076480 | MtrunA17_Chr3g0085211 | 37.313 | 134 | 79 | 3 | 1 | 134 | 227 | 355 | 5.59e-24 | 95.5 |
| Msa1076480 | MtrunA17_Chr4g0022021 | 36.364 | 143 | 86 | 4 | 4 | 145 | 227 | 365 | 3.59e-23 | 93.2 |
| Msa1076480 | MtrunA17_Chr8g0367501 | 39.535 | 129 | 75 | 3 | 2 | 130 | 220 | 345 | 3.70e-23 | 93.6 |
| Msa1076480 | MtrunA17_Chr6g0482291 | 35.938 | 128 | 71 | 3 | 2 | 129 | 41 | 157 | 7.06e-23 | 89.0 |
| Msa1076480 | MtrunA17_Chr8g0367381 | 39.655 | 116 | 67 | 3 | 2 | 117 | 215 | 327 | 7.08e-23 | 92.0 |
| Msa1076480 | MtrunA17_Chr4g0021981 | 36.111 | 144 | 85 | 5 | 4 | 145 | 227 | 365 | 2.03e-21 | 88.6 |
| Msa1076480 | MtrunA17_Chr8g0367451 | 38.281 | 128 | 76 | 3 | 2 | 129 | 233 | 357 | 2.74e-21 | 88.2 |
| Msa1076480 | MtrunA17_Chr4g0046531 | 31.293 | 147 | 94 | 4 | 4 | 147 | 575 | 717 | 9.22e-19 | 81.6 |
| Msa1076480 | MtrunA17_Chr4g0046531 | 29.932 | 147 | 96 | 4 | 4 | 147 | 213 | 355 | 3.16e-16 | 74.3 |
| Msa1076480 | MtrunA17_Chr1g0188391 | 31.757 | 148 | 92 | 5 | 4 | 147 | 218 | 360 | 5.93e-18 | 79.0 |
| Msa1076480 | MtrunA17_Chr7g0223241 | 31.034 | 145 | 93 | 4 | 4 | 145 | 207 | 347 | 1.01e-17 | 78.2 |
| Msa1076480 | MtrunA17_Chr3g0121301 | 32.867 | 143 | 91 | 5 | 4 | 144 | 218 | 357 | 1.68e-17 | 77.4 |
| Msa1076480 | MtrunA17_Chr5g0432261 | 30.612 | 147 | 95 | 4 | 4 | 147 | 184 | 326 | 3.02e-16 | 73.9 |
| Msa1076480 | MtrunA17_Chr4g0046341 | 29.252 | 147 | 97 | 4 | 4 | 147 | 221 | 363 | 1.79e-15 | 72.0 |
| Msa1076480 | MtrunA17_Chr5g0432241 | 32.593 | 135 | 79 | 5 | 4 | 132 | 216 | 344 | 3.35e-15 | 71.2 |
| Msa1076480 | MtrunA17_Chr4g0046361 | 29.252 | 147 | 97 | 4 | 4 | 147 | 218 | 360 | 3.71e-15 | 70.9 |
| Msa1076480 | MtrunA17_Chr7g0223231 | 29.655 | 145 | 95 | 4 | 4 | 145 | 207 | 347 | 6.41e-15 | 70.5 |
| Msa1076480 | MtrunA17_Chr7g0219171 | 28.889 | 135 | 89 | 3 | 16 | 147 | 117 | 247 | 1.23e-14 | 68.6 |
| Msa1076480 | MtrunA17_Chr5g0432301 | 33.333 | 135 | 78 | 5 | 4 | 132 | 216 | 344 | 1.47e-14 | 69.3 |
| Msa1076480 | MtrunA17_Chr5g0432251 | 33.083 | 133 | 81 | 5 | 4 | 132 | 215 | 343 | 1.75e-14 | 68.9 |
| Msa1076480 | MtrunA17_Chr4g0040621 | 29.655 | 145 | 95 | 4 | 4 | 145 | 226 | 366 | 1.08e-13 | 67.0 |
| Msa1076480 | MtrunA17_Chr7g0219161 | 30.894 | 123 | 78 | 3 | 13 | 132 | 223 | 341 | 1.88e-13 | 66.2 |
| Msa1076480 | MtrunA17_Chr5g0432211 | 31.111 | 135 | 81 | 6 | 4 | 132 | 201 | 329 | 3.08e-13 | 65.5 |
| Msa1076480 | MtrunA17_Chr7g0219141 | 28.571 | 147 | 97 | 4 | 4 | 147 | 215 | 356 | 5.02e-13 | 65.1 |
| Msa1076480 | MtrunA17_Chr8g0367461 | 32.979 | 94 | 61 | 2 | 37 | 130 | 3 | 94 | 1.45e-12 | 60.5 |
| Msa1076480 | MtrunA17_Chr1g0170951 | 38.889 | 72 | 42 | 1 | 61 | 132 | 20 | 89 | 2.50e-12 | 59.3 |
| Msa1076480 | MtrunA17_Chr4g0014681 | 32.710 | 107 | 67 | 3 | 4 | 107 | 220 | 324 | 4.14e-12 | 62.4 |
| Msa1076480 | MtrunA17_Chr4g0014561 | 32.710 | 107 | 67 | 3 | 4 | 107 | 220 | 324 | 1.16e-11 | 61.2 |
| Msa1076480 | MtrunA17_Chr4g0014641 | 31.776 | 107 | 68 | 3 | 4 | 107 | 220 | 324 | 5.21e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076480 | AT3G53140.1 | 52.703 | 148 | 69 | 1 | 1 | 148 | 213 | 359 | 8.47e-57 | 181 |
| Msa1076480 | AT5G54160.1 | 44.961 | 129 | 68 | 3 | 1 | 129 | 217 | 342 | 9.83e-32 | 116 |
| Msa1076480 | AT1G33030.1 | 36.486 | 148 | 92 | 2 | 1 | 148 | 205 | 350 | 8.45e-29 | 108 |
| Msa1076480 | AT1G51990.2 | 39.231 | 130 | 75 | 4 | 1 | 129 | 217 | 343 | 2.75e-27 | 104 |
| Msa1076480 | AT1G51990.1 | 39.231 | 130 | 75 | 4 | 1 | 129 | 217 | 343 | 2.77e-27 | 104 |
| Msa1076480 | AT5G37170.3 | 37.162 | 148 | 89 | 4 | 2 | 148 | 42 | 186 | 2.21e-23 | 90.9 |
| Msa1076480 | AT5G37170.2 | 37.162 | 148 | 89 | 4 | 2 | 148 | 90 | 234 | 7.16e-23 | 90.5 |
| Msa1076480 | AT1G77530.1 | 36.000 | 150 | 88 | 5 | 2 | 148 | 237 | 381 | 7.58e-23 | 92.8 |
| Msa1076480 | AT5G53810.1 | 39.695 | 131 | 75 | 4 | 2 | 131 | 234 | 361 | 9.05e-23 | 92.4 |
| Msa1076480 | AT1G77520.1 | 34.459 | 148 | 93 | 4 | 2 | 148 | 237 | 381 | 2.87e-22 | 91.3 |
| Msa1076480 | AT5G37170.1 | 37.162 | 148 | 89 | 4 | 2 | 148 | 190 | 334 | 3.47e-22 | 90.5 |
| Msa1076480 | AT1G62900.1 | 35.156 | 128 | 81 | 2 | 2 | 129 | 61 | 186 | 1.82e-20 | 83.6 |
| Msa1076480 | AT1G21100.1 | 34.722 | 144 | 89 | 5 | 2 | 144 | 229 | 368 | 5.58e-20 | 84.7 |
| Msa1076480 | AT1G21120.2 | 34.722 | 144 | 89 | 5 | 2 | 144 | 277 | 416 | 6.35e-20 | 85.1 |
| Msa1076480 | AT1G21120.1 | 34.722 | 144 | 89 | 5 | 2 | 144 | 229 | 368 | 6.89e-20 | 84.7 |
| Msa1076480 | AT1G21130.1 | 34.722 | 144 | 89 | 5 | 2 | 144 | 229 | 368 | 1.11e-19 | 84.0 |
| Msa1076480 | AT1G21110.1 | 34.722 | 144 | 89 | 5 | 2 | 144 | 229 | 368 | 1.21e-19 | 84.0 |
| Msa1076480 | AT1G63140.2 | 32.653 | 147 | 97 | 2 | 2 | 148 | 237 | 381 | 2.28e-19 | 83.2 |
| Msa1076480 | AT1G63140.4 | 34.667 | 150 | 90 | 5 | 2 | 148 | 257 | 401 | 2.40e-19 | 83.2 |
| Msa1076480 | AT1G76790.1 | 35.714 | 140 | 85 | 5 | 2 | 140 | 221 | 356 | 8.58e-19 | 81.6 |
| Msa1076480 | AT4G35160.1 | 30.464 | 151 | 96 | 5 | 1 | 144 | 229 | 377 | 1.56e-15 | 72.4 |
| Msa1076480 | AT4G35150.1 | 30.201 | 149 | 95 | 5 | 3 | 144 | 174 | 320 | 6.38e-15 | 70.5 |
Find 134 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCCTTTGTTGAAAA+TGG | 0.201432 | 7_2:+74993770 | None:intergenic |
| GATGCACTTGCAACAATTTC+GGG | 0.208479 | 7_2:+74993098 | None:intergenic |
| CCAGCCTTTCTTCAGTAATA+AGG | 0.214115 | 7_2:+74993946 | None:intergenic |
| TGCGGCTACTGCTATTAATT+TGG | 0.216670 | 7_2:-74991378 | Msa1076480:three_prime_UTR |
| TGTTCCATATAATCTTATTT+TGG | 0.230280 | 7_2:-74991868 | Msa1076480:three_prime_UTR |
| AAAACCAAAATAAGATTATA+TGG | 0.250414 | 7_2:+74991864 | None:intergenic |
| AAACTAACCAATAGTTAATA+AGG | 0.261463 | 7_2:-74991634 | Msa1076480:three_prime_UTR |
| GGATGCACTTGCAACAATTT+CGG | 0.264494 | 7_2:+74993097 | None:intergenic |
| TACTGCTATTAATTTGGTTT+CGG | 0.287628 | 7_2:-74991372 | Msa1076480:three_prime_UTR |
| CATTTCTTTGCAGATTATAA+TGG | 0.291703 | 7_2:-74993162 | Msa1076480:exon |
| CAATTATCCTTATTAACTAT+TGG | 0.294619 | 7_2:+74991627 | None:intergenic |
| TTGATTCCCTTGCTAATGTT+TGG | 0.298354 | 7_2:+74993131 | None:intergenic |
| CCACTTGCAGTGGTTGTGTT+TGG | 0.298953 | 7_2:-74992245 | Msa1076480:intron |
| CACTTGCAGTGGTTGTGTTT+GGG | 0.301970 | 7_2:-74992244 | Msa1076480:intron |
| GTAGTGTGCAGAGTATTAAT+TGG | 0.305171 | 7_2:+74991676 | None:intergenic |
| GATGAACTTTGACCTTTATC+AGG | 0.326389 | 7_2:+74992343 | None:intergenic |
| CAATAGTTAATAAGGATAAT+TGG | 0.331787 | 7_2:-74991626 | Msa1076480:three_prime_UTR |
| GGACTTAGCATTCATCTTCC+TGG | 0.334301 | 7_2:+74993969 | None:intergenic |
| TATGTCGGCTTCCGAGATTT+TGG | 0.350091 | 7_2:-74993742 | Msa1076480:five_prime_UTR |
| CAGCCTTTCTTCAGTAATAA+GGG | 0.352869 | 7_2:+74993947 | None:intergenic |
| AAGAAGGGACACTCATTAGA+TGG | 0.354636 | 7_2:+74993829 | None:intergenic |
| CCTTTGTTGAAAATGGTATT+CGG | 0.362610 | 7_2:+74993777 | None:intergenic |
| GCCACTGAGTTTGTTCCTCC+TGG | 0.367726 | 7_2:-74992375 | Msa1076480:CDS |
| CGGAACATCTAGTTCAATTA+CGG | 0.368181 | 7_2:+74993797 | None:intergenic |
| TGATTCCCTTGCTAATGTTT+GGG | 0.371395 | 7_2:+74993132 | None:intergenic |
| TTCTACATGCACGTCTCAAA+TGG | 0.375171 | 7_2:-74991450 | Msa1076480:three_prime_UTR |
| TGGCAATTGTTCGCCCAAAC+GGG | 0.376633 | 7_2:-74993722 | Msa1076480:five_prime_UTR |
| GAATTGCCATCGCACTCTTC+CGG | 0.392975 | 7_2:-74992185 | Msa1076480:CDS |
| TTTCGGAATGGTTCTGTGGA+TGG | 0.400183 | 7_2:+74993352 | None:intergenic |
| GTAATATTTGCTTGAGTGGT+GGG | 0.410185 | 7_2:-74991515 | Msa1076480:three_prime_UTR |
| ACAACCTGAGCATACGTTCC+AGG | 0.411672 | 7_2:+74993682 | None:intergenic |
| AACTAGTATACCTGGGAGTT+GGG | 0.411741 | 7_2:+74993076 | None:intergenic |
| TTGCATAGCATGCGTATATG+AGG | 0.420769 | 7_2:-74993408 | Msa1076480:intron |
| TTGGCAATTGTTCGCCCAAA+CGG | 0.423424 | 7_2:-74993723 | Msa1076480:five_prime_UTR |
| GTGCTTTCGTCCGTCACCTC+TGG | 0.424029 | 7_2:+74992127 | None:intergenic |
| TCGTGGTGTGGAAGCTTTAG+TGG | 0.426953 | 7_2:-74993204 | Msa1076480:five_prime_UTR |
| AAACTAGTATACCTGGGAGT+TGG | 0.430030 | 7_2:+74993075 | None:intergenic |
| GGTCCTCAACCACGTCCTTA+AGG | 0.435556 | 7_2:+74993374 | None:intergenic |
| AAGAATAACGAAAACTTGTA+TGG | 0.436015 | 7_2:+74993915 | None:intergenic |
| CACATTTAAAGAAGAAAGGC+TGG | 0.438388 | 7_2:-74993998 | Msa1076480:five_prime_UTR |
| AGTTGCTATACACAGTAATA+AGG | 0.441280 | 7_2:+74994022 | None:intergenic |
| ACGTATGCTCAGGTTGTTAA+CGG | 0.445131 | 7_2:-74993676 | Msa1076480:five_prime_UTR |
| TGGAGACGCTATCCTGATAA+AGG | 0.450510 | 7_2:-74992355 | Msa1076480:intron |
| ACTTCACTTGCATTATTGCT+TGG | 0.451210 | 7_2:-74994217 | Msa1076480:five_prime_UTR |
| AGTCTTTCAGATTGAATAAG+TGG | 0.452614 | 7_2:-74991927 | Msa1076480:three_prime_UTR |
| TGAAAAGGAGTTCAAACAGC+TGG | 0.457935 | 7_2:-74992032 | Msa1076480:CDS |
| GTCTTCATGTTGACCATGTA+CGG | 0.459597 | 7_2:-74992076 | Msa1076480:CDS |
| AACGGCTTGCGATATCTTTG+AGG | 0.461506 | 7_2:-74993658 | Msa1076480:five_prime_UTR |
| TTCGGAATGGTTCTGTGGAT+GGG | 0.463389 | 7_2:+74993353 | None:intergenic |
| AAAGTGATATTTGATGGAAA+TGG | 0.469146 | 7_2:-74994166 | Msa1076480:five_prime_UTR |
| AATTATTGCATGTGATTCCT+CGG | 0.471616 | 7_2:-74994111 | Msa1076480:five_prime_UTR |
| TCTCCTTAAGGACGTGGTTG+AGG | 0.475785 | 7_2:-74993377 | Msa1076480:five_prime_UTR |
| TCCCCGTTCACCTTTCGGAA+TGG | 0.477319 | 7_2:+74993340 | None:intergenic |
| TGGTGGTGTTGAAGCATGTA+AGG | 0.478628 | 7_2:+74993546 | None:intergenic |
| AGCAAAACATAGAACTGAAA+AGG | 0.478672 | 7_2:-74992047 | Msa1076480:CDS |
| AGTGGATGTCGGAGGCAATA+CGG | 0.489801 | 7_2:-74993186 | Msa1076480:five_prime_UTR |
| TCTACATGCACGTCTCAAAT+GGG | 0.490742 | 7_2:-74991449 | Msa1076480:three_prime_UTR |
| CATCGCACTCTTCCGGCGCA+TGG | 0.492823 | 7_2:-74992178 | Msa1076480:CDS |
| TCCGTCACCTCTGGCAGCAC+AGG | 0.497598 | 7_2:+74992136 | None:intergenic |
| GAGGAGCACTTGATGAGTAA+TGG | 0.500457 | 7_2:-74993639 | Msa1076480:five_prime_UTR |
| GAATCATACGATGGGTTTCG+TGG | 0.501624 | 7_2:-74993221 | Msa1076480:five_prime_UTR |
| ATTACGGCAACTAGAGAAGA+AGG | 0.503424 | 7_2:+74993813 | None:intergenic |
| GTGGATGTCGGAGGCAATAC+GGG | 0.503454 | 7_2:-74993185 | Msa1076480:five_prime_UTR |
| GTCCCCTTATTACTGAAGAA+AGG | 0.510541 | 7_2:-74993950 | Msa1076480:five_prime_UTR |
| AATGATTAAAAGAAAGAGAA+TGG | 0.513366 | 7_2:+74991595 | None:intergenic |
| ACTTATTCAATCTGAAAGAC+TGG | 0.518427 | 7_2:+74991929 | None:intergenic |
| AGCATGCGTATATGAGGGCC+TGG | 0.519335 | 7_2:-74993402 | Msa1076480:five_prime_UTR |
| ACTACACATTTAAAGAAGAA+AGG | 0.519813 | 7_2:-74994002 | Msa1076480:five_prime_UTR |
| CCTTATTACTGAAGAAAGGC+TGG | 0.522893 | 7_2:-74993946 | Msa1076480:five_prime_UTR |
| AGTAATATTTGCTTGAGTGG+TGG | 0.523637 | 7_2:-74991516 | Msa1076480:three_prime_UTR |
| AAAGTTCTCACTTGCAGAGG+TGG | 0.525549 | 7_2:-74993610 | Msa1076480:five_prime_UTR |
| TCCTGTGCTGCCAGAGGTGA+CGG | 0.530070 | 7_2:-74992137 | Msa1076480:CDS |
| CACCTTTCGGAATGGTTCTG+TGG | 0.531270 | 7_2:+74993348 | None:intergenic |
| GTGTGCAGAGTATTAATTGG+AGG | 0.535983 | 7_2:+74991679 | None:intergenic |
| GGACGAAAGCACCAGGTCAA+AGG | 0.536548 | 7_2:-74992116 | Msa1076480:CDS |
| TAATATTTGCTTGAGTGGTG+GGG | 0.536655 | 7_2:-74991514 | Msa1076480:three_prime_UTR |
| GACGAAACATAAATTAAAGA+TGG | 0.537470 | 7_2:+74991415 | None:intergenic |
| CTGGCCTCTCCTTAAGGACG+TGG | 0.540481 | 7_2:-74993383 | Msa1076480:five_prime_UTR |
| TCTCGGAAGCCGACATAGGA+AGG | 0.542283 | 7_2:+74993748 | None:intergenic |
| AGCAATAATGCAAGTGAAGT+GGG | 0.542613 | 7_2:+74994220 | None:intergenic |
| TTTATCAGGATAGCGTCTCC+AGG | 0.543527 | 7_2:+74992357 | None:intergenic |
| GGTCAAAGGCTTTGCTAGGT+GGG | 0.544296 | 7_2:-74992102 | Msa1076480:CDS |
| ATTATAAGTTTGCCATGCGC+CGG | 0.546826 | 7_2:+74992166 | None:intergenic |
| GCGAACAATTGCCAAAATCT+CGG | 0.548219 | 7_2:+74993731 | None:intergenic |
| GGGAGTAATATTTGCTTGAG+TGG | 0.548803 | 7_2:-74991519 | Msa1076480:three_prime_UTR |
| AAAATCTCGGAAGCCGACAT+AGG | 0.549653 | 7_2:+74993744 | None:intergenic |
| ATACGATGGGTTTCGTGGTG+TGG | 0.549799 | 7_2:-74993216 | Msa1076480:five_prime_UTR |
| CAGTGGCATCACCACCAACA+TGG | 0.551519 | 7_2:+74992391 | None:intergenic |
| GGGAGGGGAAGCAGATAACC+TGG | 0.553967 | 7_2:-74993700 | Msa1076480:five_prime_UTR |
| GGCAATTGTTCGCCCAAACG+GGG | 0.556647 | 7_2:-74993721 | Msa1076480:five_prime_UTR |
| CACGTCCTTAAGGAGAGGCC+AGG | 0.564870 | 7_2:+74993384 | None:intergenic |
| ATCACATGCAATAATTGTAG+TGG | 0.566439 | 7_2:+74994118 | None:intergenic |
| AAGCAATAATGCAAGTGAAG+TGG | 0.567658 | 7_2:+74994219 | None:intergenic |
| AGAAGGGACACTCATTAGAT+GGG | 0.568213 | 7_2:+74993830 | None:intergenic |
| ATTGAATAAGTGGAGCATGT+TGG | 0.574143 | 7_2:-74991917 | Msa1076480:three_prime_UTR |
| TAAATTCCCAAACATTAGCA+AGG | 0.576073 | 7_2:-74993138 | Msa1076480:CDS |
| GGAGTTCAAACAGCTGGGTG+TGG | 0.577947 | 7_2:-74992026 | Msa1076480:CDS |
| TATATAGGCATAACCCATGT+TGG | 0.581114 | 7_2:-74992405 | Msa1076480:intron |
| AGGTGACGGACGAAAGCACC+AGG | 0.581942 | 7_2:-74992123 | Msa1076480:CDS |
| AGGAAGCAACCTTCCTATGT+CGG | 0.584154 | 7_2:-74993757 | Msa1076480:five_prime_UTR |
| GAAAAGGAGTTCAAACAGCT+GGG | 0.589404 | 7_2:-74992031 | Msa1076480:CDS |
| ATAACCTGGAACGTATGCTC+AGG | 0.589626 | 7_2:-74993686 | Msa1076480:five_prime_UTR |
| AGGTCAAAGGCTTTGCTAGG+TGG | 0.592128 | 7_2:-74992103 | Msa1076480:CDS |
| GCAAGTGCATCCCAACTCCC+AGG | 0.592348 | 7_2:-74993086 | Msa1076480:intron |
| TCTTCATGTTGACCATGTAC+GGG | 0.597701 | 7_2:-74992075 | Msa1076480:CDS |
| TAGAAAGTTCTCACTTGCAG+AGG | 0.598594 | 7_2:-74993613 | Msa1076480:five_prime_UTR |
| ACCTAGCAAAGCCTTTGACC+TGG | 0.598918 | 7_2:+74992105 | None:intergenic |
| AGCCTTTCTTCAGTAATAAG+GGG | 0.603975 | 7_2:+74993948 | None:intergenic |
| ATAGGCATAACCCATGTTGG+TGG | 0.606921 | 7_2:-74992402 | Msa1076480:intron |
| ACCAGGTCAAAGGCTTTGCT+AGG | 0.608746 | 7_2:-74992106 | Msa1076480:CDS |
| TTACATGCTTCAACACCACC+AGG | 0.609500 | 7_2:-74993544 | Msa1076480:intron |
| TGCATAGCATGCGTATATGA+GGG | 0.613972 | 7_2:-74993407 | Msa1076480:intron |
| AAGTTCTCACTTGCAGAGGT+GGG | 0.615623 | 7_2:-74993609 | Msa1076480:five_prime_UTR |
| GTGGAAGCTTTAGTGGATGT+CGG | 0.617047 | 7_2:-74993197 | Msa1076480:five_prime_UTR |
| TCTCTTGCTGAAGATGAAGA+CGG | 0.627359 | 7_2:-74993582 | Msa1076480:five_prime_UTR |
| TGTGCAGAGTATTAATTGGA+GGG | 0.627382 | 7_2:+74991680 | None:intergenic |
| GCAATTGTTCGCCCAAACGG+GGG | 0.634691 | 7_2:-74993720 | Msa1076480:five_prime_UTR |
| CATGCGCCGGAAGAGTGCGA+TGG | 0.635476 | 7_2:+74992179 | None:intergenic |
| AAATTCCCAAACATTAGCAA+GGG | 0.640329 | 7_2:-74993137 | Msa1076480:CDS |
| AGTGGCATCACCACCAACAT+GGG | 0.643457 | 7_2:+74992392 | None:intergenic |
| AATGTAGTACAAGTATGATG+AGG | 0.653093 | 7_2:-74992207 | Msa1076480:CDS |
| TCAACCACGTCCTTAAGGAG+AGG | 0.660229 | 7_2:+74993379 | None:intergenic |
| GGTGGTGTTGAAGCATGTAA+GGG | 0.663090 | 7_2:+74993547 | None:intergenic |
| ATCCACAGAACCATTCCGAA+AGG | 0.665367 | 7_2:-74993350 | Msa1076480:intron |
| ATGCACTTGCAACAATTTCG+GGG | 0.690506 | 7_2:+74993099 | None:intergenic |
| TTGTGATCCTGTGCTGCCAG+AGG | 0.692848 | 7_2:-74992143 | Msa1076480:CDS |
| TGTGCAGTTGCTATCAACCG+AGG | 0.692934 | 7_2:+74994094 | None:intergenic |
| AGTAGCCGCAACAGTATATG+CGG | 0.696090 | 7_2:+74991391 | None:intergenic |
| TTACGGCAACTAGAGAAGAA+GGG | 0.699895 | 7_2:+74993814 | None:intergenic |
| GTGGTGTTGAAGCATGTAAG+GGG | 0.700082 | 7_2:+74993548 | None:intergenic |
| ATCAGGATAGCGTCTCCAGG+AGG | 0.718508 | 7_2:+74992360 | None:intergenic |
| GAAGCTTTAGTGGATGTCGG+AGG | 0.718582 | 7_2:-74993194 | Msa1076480:five_prime_UTR |
| TCCAGGAGGAACAAACTCAG+TGG | 0.725727 | 7_2:+74992374 | None:intergenic |
| AATAATGCAAGTGAAGTGGG+AGG | 0.735042 | 7_2:+74994223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTATTATTATTATTTTTT+CGG | - | chr7_2:74992710-74992729 | Msa1076480:intron | 10.0% |
| !!! | TAAAAATTCGTTTTTACAAA+AGG | - | chr7_2:74992672-74992691 | Msa1076480:intron | 15.0% |
| !!! | AAGTGTTGTTAATTTTTTTA+GGG | - | chr7_2:74992757-74992776 | Msa1076480:intron | 15.0% |
| !! | AAAATATTTGCAAGTATATA+TGG | + | chr7_2:74993078-74993097 | None:intergenic | 15.0% |
| !! | AAAACCAAAATAAGATTATA+TGG | + | chr7_2:74993675-74993694 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr7_2:74993784-74993803 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr7_2:74993888-74993907 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGTGATATTTGA+TGG | - | chr7_2:74991364-74991383 | Msa1076480:three_prime_UTR | 20.0% |
| !!! | TTGTTTAACAAAGCTTTTAT+TGG | - | chr7_2:74992262-74992281 | Msa1076480:intron | 20.0% |
| !!! | GAAGTGTTGTTAATTTTTTT+AGG | - | chr7_2:74992756-74992775 | Msa1076480:intron | 20.0% |
| !! | CATAATCATATTGCATATAT+AGG | - | chr7_2:74993116-74993135 | Msa1076480:CDS | 20.0% |
| !!! | TGTTCCATATAATCTTATTT+TGG | - | chr7_2:74993668-74993687 | Msa1076480:five_prime_UTR | 20.0% |
| !! | GAAAAAAGTTATTATTGCAT+TGG | + | chr7_2:74993824-74993843 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr7_2:74993902-74993921 | Msa1076480:five_prime_UTR | 20.0% |
| !! | CAATTATCCTTATTAACTAT+TGG | + | chr7_2:74993912-74993931 | None:intergenic | 20.0% |
| !! | CAATAGTTAATAAGGATAAT+TGG | - | chr7_2:74993910-74993929 | Msa1076480:five_prime_UTR | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr7_2:74993944-74993963 | None:intergenic | 20.0% |
| !! | ATTAAAAATAATTGAGGTGT+GGG | + | chr7_2:74994053-74994072 | None:intergenic | 20.0% |
| !! | AATTAAAAATAATTGAGGTG+TGG | + | chr7_2:74994054-74994073 | None:intergenic | 20.0% |
| ! | AAAGTGATATTTGATGGAAA+TGG | - | chr7_2:74991370-74991389 | Msa1076480:three_prime_UTR | 25.0% |
| ! | ACTACACATTTAAAGAAGAA+AGG | - | chr7_2:74991534-74991553 | Msa1076480:three_prime_UTR | 25.0% |
| ! | AAGAATAACGAAAACTTGTA+TGG | + | chr7_2:74991624-74991643 | None:intergenic | 25.0% |
| !! | AAACTTCTCTAAAAATGGAA+TGG | + | chr7_2:74992293-74992312 | None:intergenic | 25.0% |
| !!! | TTCCATTTTTAGAGAAGTTT+TGG | - | chr7_2:74992293-74992312 | Msa1076480:intron | 25.0% |
| !! | TTCCAAAACTTCTCTAAAAA+TGG | + | chr7_2:74992298-74992317 | None:intergenic | 25.0% |
| ! | CATTTCTTTGCAGATTATAA+TGG | - | chr7_2:74992374-74992393 | Msa1076480:CDS | 25.0% |
| !!! | ACTTTAAAACTAGTATACCT+GGG | + | chr7_2:74992470-74992489 | None:intergenic | 25.0% |
| !!! | TACTTTAAAACTAGTATACC+TGG | + | chr7_2:74992471-74992490 | None:intergenic | 25.0% |
| !!! | CGATGTAGATATTTTTAGAT+TGG | - | chr7_2:74992491-74992510 | Msa1076480:intron | 25.0% |
| !! | TAATAATAAAGCCCTCATTT+TGG | + | chr7_2:74992641-74992660 | None:intergenic | 25.0% |
| !!! | AAATTCGTTTTTACAAAAGG+TGG | - | chr7_2:74992675-74992694 | Msa1076480:intron | 25.0% |
| !!! | AACCGCTTATTTTTTTTTGA+GGG | - | chr7_2:74992941-74992960 | Msa1076480:intron | 25.0% |
| ! | CACACTTATACTTAAAAGTA+GGG | + | chr7_2:74993010-74993029 | None:intergenic | 25.0% |
| ! | ACACACTTATACTTAAAAGT+AGG | + | chr7_2:74993011-74993030 | None:intergenic | 25.0% |
| !!! | TTTTAATTCAACTAGAGAGT+GGG | + | chr7_2:74993218-74993237 | None:intergenic | 25.0% |
| !!! | TTTTTAATTCAACTAGAGAG+TGG | + | chr7_2:74993219-74993238 | None:intergenic | 25.0% |
| ! | GACGAAACATAAATTAAAGA+TGG | + | chr7_2:74994124-74994143 | None:intergenic | 25.0% |
| !! | TACTGCTATTAATTTGGTTT+CGG | - | chr7_2:74994164-74994183 | Msa1076480:five_prime_UTR | 25.0% |
| ATCACATGCAATAATTGTAG+TGG | + | chr7_2:74991421-74991440 | None:intergenic | 30.0% | |
| AATTATTGCATGTGATTCCT+CGG | - | chr7_2:74991425-74991444 | Msa1076480:three_prime_UTR | 30.0% | |
| AGTTGCTATACACAGTAATA+AGG | + | chr7_2:74991517-74991536 | None:intergenic | 30.0% | |
| CCTTTGTTGAAAATGGTATT+CGG | + | chr7_2:74991762-74991781 | None:intergenic | 30.0% | |
| ACAACTGATAATAACTAACC+TGG | + | chr7_2:74992013-74992032 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGGAATCATACGAT+GGG | - | chr7_2:74992307-74992326 | Msa1076480:intron | 30.0% |
| TAAATTCCCAAACATTAGCA+AGG | - | chr7_2:74992398-74992417 | Msa1076480:CDS | 30.0% | |
| AAATTCCCAAACATTAGCAA+GGG | - | chr7_2:74992399-74992418 | Msa1076480:CDS | 30.0% | |
| !!! | CAACCGCTTATTTTTTTTTG+AGG | - | chr7_2:74992940-74992959 | Msa1076480:intron | 30.0% |
| !!! | ACCGCTTATTTTTTTTTGAG+GGG | - | chr7_2:74992942-74992961 | Msa1076480:intron | 30.0% |
| ACCCCTCAAAAAAAAATAAG+CGG | + | chr7_2:74992946-74992965 | None:intergenic | 30.0% | |
| ! | TTATTAGGTTGCCTTATGTT+TGG | - | chr7_2:74992979-74992998 | Msa1076480:intron | 30.0% |
| ! | TATTAGGTTGCCTTATGTTT+GGG | - | chr7_2:74992980-74992999 | Msa1076480:intron | 30.0% |
| CTTATACTTAAAAGTAGGGT+CGG | + | chr7_2:74993006-74993025 | None:intergenic | 30.0% | |
| AATTAATATTCCACTTGCAG+TGG | - | chr7_2:74993281-74993300 | Msa1076480:intron | 30.0% | |
| AATGTAGTACAAGTATGATG+AGG | - | chr7_2:74993329-74993348 | Msa1076480:intron | 30.0% | |
| AGCAAAACATAGAACTGAAA+AGG | - | chr7_2:74993489-74993508 | Msa1076480:intron | 30.0% | |
| ! | TGATGCATACATGACATTTT+TGG | - | chr7_2:74993567-74993586 | Msa1076480:five_prime_UTR | 30.0% |
| ACTTATTCAATCTGAAAGAC+TGG | + | chr7_2:74993610-74993629 | None:intergenic | 30.0% | |
| AGTCTTTCAGATTGAATAAG+TGG | - | chr7_2:74993609-74993628 | Msa1076480:five_prime_UTR | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr7_2:74993992-74994011 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr7_2:74993993-74994012 | Msa1076480:five_prime_UTR | 30.0% |
| AGCAATAATGCAAGTGAAGT+GGG | + | chr7_2:74991319-74991338 | None:intergenic | 35.0% | |
| AAGCAATAATGCAAGTGAAG+TGG | + | chr7_2:74991320-74991339 | None:intergenic | 35.0% | |
| ACTTCACTTGCATTATTGCT+TGG | - | chr7_2:74991319-74991338 | Msa1076480:three_prime_UTR | 35.0% | |
| CACATTTAAAGAAGAAAGGC+TGG | - | chr7_2:74991538-74991557 | Msa1076480:three_prime_UTR | 35.0% | |
| AGCCTTTCTTCAGTAATAAG+GGG | + | chr7_2:74991591-74991610 | None:intergenic | 35.0% | |
| CAGCCTTTCTTCAGTAATAA+GGG | + | chr7_2:74991592-74991611 | None:intergenic | 35.0% | |
| ! | CGGAACATCTAGTTCAATTA+CGG | + | chr7_2:74991742-74991761 | None:intergenic | 35.0% |
| ! | CCGAATACCATTTTCAACAA+AGG | - | chr7_2:74991759-74991778 | Msa1076480:three_prime_UTR | 35.0% |
| GTTGCTTCCTTTGTTGAAAA+TGG | + | chr7_2:74991769-74991788 | None:intergenic | 35.0% | |
| ACTGATAATAACTAACCTGG+TGG | + | chr7_2:74992010-74992029 | None:intergenic | 35.0% | |
| TTTACGTAAAAGTCATGTGC+TGG | + | chr7_2:74992223-74992242 | None:intergenic | 35.0% | |
| !!! | GAAGTTTTGGAATCATACGA+TGG | - | chr7_2:74992306-74992325 | Msa1076480:intron | 35.0% |
| TGATTCCCTTGCTAATGTTT+GGG | + | chr7_2:74992407-74992426 | None:intergenic | 35.0% | |
| TTGATTCCCTTGCTAATGTT+TGG | + | chr7_2:74992408-74992427 | None:intergenic | 35.0% | |
| TAAGTACTTGGCATTTAAGC+AGG | - | chr7_2:74992580-74992599 | Msa1076480:intron | 35.0% | |
| AAGTACTTGGCATTTAAGCA+GGG | - | chr7_2:74992581-74992600 | Msa1076480:intron | 35.0% | |
| !!! | CTCATTTTGGTGTTTGCTTT+GGG | + | chr7_2:74992628-74992647 | None:intergenic | 35.0% |
| CAAAGCAAACACCAAAATGA+GGG | - | chr7_2:74992627-74992646 | Msa1076480:intron | 35.0% | |
| ! | AAAAGGTGGTAGTGTTGTTA+TGG | - | chr7_2:74992689-74992708 | Msa1076480:intron | 35.0% |
| AACAAACATGTGTAAGTCCT+AGG | + | chr7_2:74992854-74992873 | None:intergenic | 35.0% | |
| CATATCGATATCTAGCAGAA+TGG | + | chr7_2:74992905-74992924 | None:intergenic | 35.0% | |
| ! | GTCTAAAGCAAGGGTTTATT+AGG | - | chr7_2:74992964-74992983 | Msa1076480:intron | 35.0% |
| TATATAGGCATAACCCATGT+TGG | - | chr7_2:74993131-74993150 | Msa1076480:CDS | 35.0% | |
| GATGAACTTTGACCTTTATC+AGG | + | chr7_2:74993196-74993215 | None:intergenic | 35.0% | |
| !!! | TTTTGGAGTATCACAAGTAG+CGG | - | chr7_2:74993584-74993603 | Msa1076480:five_prime_UTR | 35.0% |
| ATTGAATAAGTGGAGCATGT+TGG | - | chr7_2:74993619-74993638 | Msa1076480:five_prime_UTR | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr7_2:74993758-74993777 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr7_2:74993859-74993878 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr7_2:74993863-74993882 | None:intergenic | 35.0% |
| AGTAATATTTGCTTGAGTGG+TGG | - | chr7_2:74994020-74994039 | Msa1076480:five_prime_UTR | 35.0% | |
| GTAATATTTGCTTGAGTGGT+GGG | - | chr7_2:74994021-74994040 | Msa1076480:five_prime_UTR | 35.0% | |
| TAATATTTGCTTGAGTGGTG+GGG | - | chr7_2:74994022-74994041 | Msa1076480:five_prime_UTR | 35.0% | |
| !!! | AAGAAAGGCTGGTTTTTTCC+AGG | - | chr7_2:74991549-74991568 | Msa1076480:three_prime_UTR | 40.0% |
| GTCCCCTTATTACTGAAGAA+AGG | - | chr7_2:74991586-74991605 | Msa1076480:three_prime_UTR | 40.0% | |
| CCAGCCTTTCTTCAGTAATA+AGG | + | chr7_2:74991593-74991612 | None:intergenic | 40.0% | |
| CCTTATTACTGAAGAAAGGC+TGG | - | chr7_2:74991590-74991609 | Msa1076480:three_prime_UTR | 40.0% | |
| AGAAGGGACACTCATTAGAT+GGG | + | chr7_2:74991709-74991728 | None:intergenic | 40.0% | |
| AAGAAGGGACACTCATTAGA+TGG | + | chr7_2:74991710-74991729 | None:intergenic | 40.0% | |
| TTACGGCAACTAGAGAAGAA+GGG | + | chr7_2:74991725-74991744 | None:intergenic | 40.0% | |
| ATTACGGCAACTAGAGAAGA+AGG | + | chr7_2:74991726-74991745 | None:intergenic | 40.0% | |
| GCGAACAATTGCCAAAATCT+CGG | + | chr7_2:74991808-74991827 | None:intergenic | 40.0% | |
| ! | ACGTATGCTCAGGTTGTTAA+CGG | - | chr7_2:74991860-74991879 | Msa1076480:three_prime_UTR | 40.0% |
| TAGAAAGTTCTCACTTGCAG+AGG | - | chr7_2:74991923-74991942 | Msa1076480:three_prime_UTR | 40.0% | |
| TCTCTTGCTGAAGATGAAGA+CGG | - | chr7_2:74991954-74991973 | Msa1076480:exon | 40.0% | |
| TTGCATAGCATGCGTATATG+AGG | - | chr7_2:74992128-74992147 | Msa1076480:CDS | 40.0% | |
| TGCATAGCATGCGTATATGA+GGG | - | chr7_2:74992129-74992148 | Msa1076480:CDS | 40.0% | |
| ATGCACTTGCAACAATTTCG+GGG | + | chr7_2:74992440-74992459 | None:intergenic | 40.0% | |
| GATGCACTTGCAACAATTTC+GGG | + | chr7_2:74992441-74992460 | None:intergenic | 40.0% | |
| GGATGCACTTGCAACAATTT+CGG | + | chr7_2:74992442-74992461 | None:intergenic | 40.0% | |
| AACTAGTATACCTGGGAGTT+GGG | + | chr7_2:74992463-74992482 | None:intergenic | 40.0% | |
| AAACTAGTATACCTGGGAGT+TGG | + | chr7_2:74992464-74992483 | None:intergenic | 40.0% | |
| GTACGTGACTGTTAAGTACT+TGG | - | chr7_2:74992568-74992587 | Msa1076480:intron | 40.0% | |
| !!! | CCTCATTTTGGTGTTTGCTT+TGG | + | chr7_2:74992629-74992648 | None:intergenic | 40.0% |
| CCAAAGCAAACACCAAAATG+AGG | - | chr7_2:74992626-74992645 | Msa1076480:intron | 40.0% | |
| ! | CTAGGTTGAAGACATTGTGA+AGG | + | chr7_2:74992836-74992855 | None:intergenic | 40.0% |
| CTTCACAATGTCTTCAACCT+AGG | - | chr7_2:74992834-74992853 | Msa1076480:intron | 40.0% | |
| !! | TTTTTGAGGGGTCTAAAGCA+AGG | - | chr7_2:74992954-74992973 | Msa1076480:intron | 40.0% |
| !! | TTTTGAGGGGTCTAAAGCAA+GGG | - | chr7_2:74992955-74992974 | Msa1076480:intron | 40.0% |
| ATTATAAGTTTGCCATGCGC+CGG | + | chr7_2:74993373-74993392 | None:intergenic | 40.0% | |
| GTCTTCATGTTGACCATGTA+CGG | - | chr7_2:74993460-74993479 | Msa1076480:intron | 40.0% | |
| TCTTCATGTTGACCATGTAC+GGG | - | chr7_2:74993461-74993480 | Msa1076480:intron | 40.0% | |
| !! | TTTTGCTTTTGACCCGTACA+TGG | + | chr7_2:74993476-74993495 | None:intergenic | 40.0% |
| TGAAAAGGAGTTCAAACAGC+TGG | - | chr7_2:74993504-74993523 | Msa1076480:intron | 40.0% | |
| GAAAAGGAGTTCAAACAGCT+GGG | - | chr7_2:74993505-74993524 | Msa1076480:intron | 40.0% | |
| !!! | GATTGTTTTAGCGAGTACGT+TGG | - | chr7_2:74993641-74993660 | Msa1076480:five_prime_UTR | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7_2:74993997-74994016 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr7_2:74993860-74993879 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7_2:74993997-74994016 | Msa1076480:five_prime_UTR | 40.0% |
| GGGAGTAATATTTGCTTGAG+TGG | - | chr7_2:74994017-74994036 | Msa1076480:five_prime_UTR | 40.0% | |
| TTCTACATGCACGTCTCAAA+TGG | - | chr7_2:74994086-74994105 | Msa1076480:five_prime_UTR | 40.0% | |
| TCTACATGCACGTCTCAAAT+GGG | - | chr7_2:74994087-74994106 | Msa1076480:five_prime_UTR | 40.0% | |
| TGCGGCTACTGCTATTAATT+TGG | - | chr7_2:74994158-74994177 | Msa1076480:five_prime_UTR | 40.0% | |
| GGACTTAGCATTCATCTTCC+TGG | + | chr7_2:74991570-74991589 | None:intergenic | 45.0% | |
| AGGAAGCAACCTTCCTATGT+CGG | - | chr7_2:74991779-74991798 | Msa1076480:three_prime_UTR | 45.0% | |
| AAAATCTCGGAAGCCGACAT+AGG | + | chr7_2:74991795-74991814 | None:intergenic | 45.0% | |
| !!! | TATGTCGGCTTCCGAGATTT+TGG | - | chr7_2:74991794-74991813 | Msa1076480:three_prime_UTR | 45.0% |
| TTGGCAATTGTTCGCCCAAA+CGG | - | chr7_2:74991813-74991832 | Msa1076480:three_prime_UTR | 45.0% | |
| ATAACCTGGAACGTATGCTC+AGG | - | chr7_2:74991850-74991869 | Msa1076480:three_prime_UTR | 45.0% | |
| AACGGCTTGCGATATCTTTG+AGG | - | chr7_2:74991878-74991897 | Msa1076480:three_prime_UTR | 45.0% | |
| !! | GAGGAGCACTTGATGAGTAA+TGG | - | chr7_2:74991897-74991916 | Msa1076480:three_prime_UTR | 45.0% |
| AAAGTTCTCACTTGCAGAGG+TGG | - | chr7_2:74991926-74991945 | Msa1076480:three_prime_UTR | 45.0% | |
| AAGTTCTCACTTGCAGAGGT+GGG | - | chr7_2:74991927-74991946 | Msa1076480:three_prime_UTR | 45.0% | |
| ! | GTGGTGTTGAAGCATGTAAG+GGG | + | chr7_2:74991991-74992010 | None:intergenic | 45.0% |
| ! | GGTGGTGTTGAAGCATGTAA+GGG | + | chr7_2:74991992-74992011 | None:intergenic | 45.0% |
| ! | TGGTGGTGTTGAAGCATGTA+AGG | + | chr7_2:74991993-74992012 | None:intergenic | 45.0% |
| TTACATGCTTCAACACCACC+AGG | - | chr7_2:74991992-74992011 | Msa1076480:CDS | 45.0% | |
| ! | TTCGGAATGGTTCTGTGGAT+GGG | + | chr7_2:74992186-74992205 | None:intergenic | 45.0% |
| ! | TTTCGGAATGGTTCTGTGGA+TGG | + | chr7_2:74992187-74992206 | None:intergenic | 45.0% |
| ATCCACAGAACCATTCCGAA+AGG | - | chr7_2:74992186-74992205 | Msa1076480:CDS | 45.0% | |
| GAACCATTCCGAAAGGTGAA+CGG | - | chr7_2:74992193-74992212 | Msa1076480:CDS | 45.0% | |
| AACCATTCCGAAAGGTGAAC+GGG | - | chr7_2:74992194-74992213 | Msa1076480:CDS | 45.0% | |
| ! | GAATCATACGATGGGTTTCG+TGG | - | chr7_2:74992315-74992334 | Msa1076480:intron | 45.0% |
| ! | GTGGAAGCTTTAGTGGATGT+CGG | - | chr7_2:74992339-74992358 | Msa1076480:intron | 45.0% |
| ACTTGGCATTTAAGCAGGGT+CGG | - | chr7_2:74992585-74992604 | Msa1076480:intron | 45.0% | |
| GGTCGGCACAATAAATTGTG+AGG | - | chr7_2:74992602-74992621 | Msa1076480:intron | 45.0% | |
| ATAGGCATAACCCATGTTGG+TGG | - | chr7_2:74993134-74993153 | Msa1076480:CDS | 45.0% | |
| TTTATCAGGATAGCGTCTCC+AGG | + | chr7_2:74993182-74993201 | None:intergenic | 45.0% | |
| TGGAGACGCTATCCTGATAA+AGG | - | chr7_2:74993181-74993200 | Msa1076480:five_prime_UTR | 45.0% | |
| CACTTGCAGTGGTTGTGTTT+GGG | - | chr7_2:74993292-74993311 | Msa1076480:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7_2:74993996-74994015 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr7_2:74993996-74994015 | Msa1076480:five_prime_UTR | 45.0% |
| AGTAGCCGCAACAGTATATG+CGG | + | chr7_2:74994148-74994167 | None:intergenic | 45.0% | |
| !! | TAATAAATTAAAAATAATTG+AGG | + | chr7_2:74994059-74994078 | None:intergenic | 5.0% |
| TGTGCAGTTGCTATCAACCG+AGG | + | chr7_2:74991445-74991464 | None:intergenic | 50.0% | |
| TGGCAATTGTTCGCCCAAAC+GGG | - | chr7_2:74991814-74991833 | Msa1076480:three_prime_UTR | 50.0% | |
| ACAACCTGAGCATACGTTCC+AGG | + | chr7_2:74991857-74991876 | None:intergenic | 50.0% | |
| TCAACCACGTCCTTAAGGAG+AGG | + | chr7_2:74992160-74992179 | None:intergenic | 50.0% | |
| TCTCCTTAAGGACGTGGTTG+AGG | - | chr7_2:74992159-74992178 | Msa1076480:CDS | 50.0% | |
| ! | CACCTTTCGGAATGGTTCTG+TGG | + | chr7_2:74992191-74992210 | None:intergenic | 50.0% |
| ACCATTCCGAAAGGTGAACG+GGG | - | chr7_2:74992195-74992214 | Msa1076480:CDS | 50.0% | |
| ! | ATACGATGGGTTTCGTGGTG+TGG | - | chr7_2:74992320-74992339 | Msa1076480:intron | 50.0% |
| ! | TCGTGGTGTGGAAGCTTTAG+TGG | - | chr7_2:74992332-74992351 | Msa1076480:intron | 50.0% |
| ! | GAAGCTTTAGTGGATGTCGG+AGG | - | chr7_2:74992342-74992361 | Msa1076480:intron | 50.0% |
| AGTGGATGTCGGAGGCAATA+CGG | - | chr7_2:74992350-74992369 | Msa1076480:intron | 50.0% | |
| AGTGGCATCACCACCAACAT+GGG | + | chr7_2:74993147-74993166 | None:intergenic | 50.0% | |
| TCCAGGAGGAACAAACTCAG+TGG | + | chr7_2:74993165-74993184 | None:intergenic | 50.0% | |
| CCAAACACAACCACTGCAAG+TGG | + | chr7_2:74993294-74993313 | None:intergenic | 50.0% | |
| CCACTTGCAGTGGTTGTGTT+TGG | - | chr7_2:74993291-74993310 | Msa1076480:intron | 50.0% | |
| GAATTGCCATCGCACTCTTC+CGG | - | chr7_2:74993351-74993370 | Msa1076480:five_prime_UTR | 50.0% | |
| ACCAGGTCAAAGGCTTTGCT+AGG | - | chr7_2:74993430-74993449 | Msa1076480:intron | 50.0% | |
| ACCTAGCAAAGCCTTTGACC+TGG | + | chr7_2:74993434-74993453 | None:intergenic | 50.0% | |
| AGGTCAAAGGCTTTGCTAGG+TGG | - | chr7_2:74993433-74993452 | Msa1076480:intron | 50.0% | |
| GGTCAAAGGCTTTGCTAGGT+GGG | - | chr7_2:74993434-74993453 | Msa1076480:intron | 50.0% | |
| TCTCGGAAGCCGACATAGGA+AGG | + | chr7_2:74991791-74991810 | None:intergenic | 55.0% | |
| GGCAATTGTTCGCCCAAACG+GGG | - | chr7_2:74991815-74991834 | Msa1076480:three_prime_UTR | 55.0% | |
| GCAATTGTTCGCCCAAACGG+GGG | - | chr7_2:74991816-74991835 | Msa1076480:three_prime_UTR | 55.0% | |
| AGCATGCGTATATGAGGGCC+TGG | - | chr7_2:74992134-74992153 | Msa1076480:CDS | 55.0% | |
| GGTCCTCAACCACGTCCTTA+AGG | + | chr7_2:74992165-74992184 | None:intergenic | 55.0% | |
| TCCCCGTTCACCTTTCGGAA+TGG | + | chr7_2:74992199-74992218 | None:intergenic | 55.0% | |
| CTGGTTCCCCGTTCACCTTT+CGG | + | chr7_2:74992204-74992223 | None:intergenic | 55.0% | |
| GTGGATGTCGGAGGCAATAC+GGG | - | chr7_2:74992351-74992370 | Msa1076480:intron | 55.0% | |
| GTAGGGTCGGCCCAAACATA+AGG | + | chr7_2:74992993-74993012 | None:intergenic | 55.0% | |
| CAGTGGCATCACCACCAACA+TGG | + | chr7_2:74993148-74993167 | None:intergenic | 55.0% | |
| ! | GCCACTGAGTTTGTTCCTCC+TGG | - | chr7_2:74993161-74993180 | Msa1076480:exon | 55.0% |
| ATCAGGATAGCGTCTCCAGG+AGG | + | chr7_2:74993179-74993198 | None:intergenic | 55.0% | |
| TTGTGATCCTGTGCTGCCAG+AGG | - | chr7_2:74993393-74993412 | Msa1076480:five_prime_UTR | 55.0% | |
| !! | GGACGAAAGCACCAGGTCAA+AGG | - | chr7_2:74993420-74993439 | Msa1076480:intron | 55.0% |
| GGAGTTCAAACAGCTGGGTG+TGG | - | chr7_2:74993510-74993529 | Msa1076480:intron | 55.0% | |
| CGTCGCCGCATATACTGTTG+CGG | - | chr7_2:74994140-74994159 | Msa1076480:five_prime_UTR | 55.0% | |
| ATTGTTCGCCCAAACGGGGG+AGG | - | chr7_2:74991819-74991838 | Msa1076480:three_prime_UTR | 60.0% | |
| TTGTTCGCCCAAACGGGGGA+GGG | - | chr7_2:74991820-74991839 | Msa1076480:three_prime_UTR | 60.0% | |
| GGGAGGGGAAGCAGATAACC+TGG | - | chr7_2:74991836-74991855 | Msa1076480:three_prime_UTR | 60.0% | |
| CACGTCCTTAAGGAGAGGCC+AGG | + | chr7_2:74992155-74992174 | None:intergenic | 60.0% | |
| CTGGCCTCTCCTTAAGGACG+TGG | - | chr7_2:74992153-74992172 | Msa1076480:CDS | 60.0% | |
| GCAAGTGCATCCCAACTCCC+AGG | - | chr7_2:74992450-74992469 | Msa1076480:intron | 60.0% | |
| TCCTGTGCTGCCAGAGGTGA+CGG | - | chr7_2:74993399-74993418 | Msa1076480:five_prime_UTR | 60.0% | |
| GTGCTTTCGTCCGTCACCTC+TGG | + | chr7_2:74993412-74993431 | None:intergenic | 60.0% | |
| !! | AGGTGACGGACGAAAGCACC+AGG | - | chr7_2:74993413-74993432 | Msa1076480:intron | 60.0% |
| TGTTCGCCCAAACGGGGGAG+GGG | - | chr7_2:74991821-74991840 | Msa1076480:three_prime_UTR | 65.0% | |
| CTGCTTCCCCTCCCCCGTTT+GGG | + | chr7_2:74991830-74991849 | None:intergenic | 65.0% | |
| TCTGCTTCCCCTCCCCCGTT+TGG | + | chr7_2:74991831-74991850 | None:intergenic | 65.0% | |
| GAGGGCCTGGCCTCTCCTTA+AGG | - | chr7_2:74992147-74992166 | Msa1076480:CDS | 65.0% | |
| ! | CATGCGCCGGAAGAGTGCGA+TGG | + | chr7_2:74993360-74993379 | None:intergenic | 65.0% |
| CATCGCACTCTTCCGGCGCA+TGG | - | chr7_2:74993358-74993377 | Msa1076480:five_prime_UTR | 65.0% | |
| TCCGTCACCTCTGGCAGCAC+AGG | + | chr7_2:74993403-74993422 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 74991316 | 74994242 | 74991316 | ID=Msa1076480;Name=Msa1076480 |
| chr7_2 | mRNA | 74991316 | 74994242 | 74991316 | ID=Msa1076480-mRNA-1;Parent=Msa1076480;Name=Msa1076480-mRNA-1;_AED=0.36;_eAED=0.36;_QI=858|1|0.8|1|0.75|0.8|5|639|148 |
| chr7_2 | exon | 74991316 | 74992257 | 74991316 | ID=Msa1076480-mRNA-1:exon:17789;Parent=Msa1076480-mRNA-1 |
| chr7_2 | exon | 74992356 | 74992420 | 74992356 | ID=Msa1076480-mRNA-1:exon:17788;Parent=Msa1076480-mRNA-1 |
| chr7_2 | exon | 74993087 | 74993253 | 74993087 | ID=Msa1076480-mRNA-1:exon:17787;Parent=Msa1076480-mRNA-1 |
| chr7_2 | exon | 74993351 | 74993422 | 74993351 | ID=Msa1076480-mRNA-1:exon:17786;Parent=Msa1076480-mRNA-1 |
| chr7_2 | exon | 74993545 | 74994242 | 74993545 | ID=Msa1076480-mRNA-1:exon:17785;Parent=Msa1076480-mRNA-1 |
| chr7_2 | five_prime_UTR | 74993545 | 74994242 | 74993545 | ID=Msa1076480-mRNA-1:five_prime_utr;Parent=Msa1076480-mRNA-1 |
| chr7_2 | five_prime_UTR | 74993351 | 74993422 | 74993351 | ID=Msa1076480-mRNA-1:five_prime_utr;Parent=Msa1076480-mRNA-1 |
| chr7_2 | five_prime_UTR | 74993166 | 74993253 | 74993166 | ID=Msa1076480-mRNA-1:five_prime_utr;Parent=Msa1076480-mRNA-1 |
| chr7_2 | CDS | 74993087 | 74993165 | 74993087 | ID=Msa1076480-mRNA-1:cds;Parent=Msa1076480-mRNA-1 |
| chr7_2 | CDS | 74992356 | 74992420 | 74992356 | ID=Msa1076480-mRNA-1:cds;Parent=Msa1076480-mRNA-1 |
| chr7_2 | CDS | 74991955 | 74992257 | 74991955 | ID=Msa1076480-mRNA-1:cds;Parent=Msa1076480-mRNA-1 |
| chr7_2 | three_prime_UTR | 74991316 | 74991954 | 74991316 | ID=Msa1076480-mRNA-1:three_prime_utr;Parent=Msa1076480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
