AlfalfaGEDB | Msa1122660

M. sativa cultivar zhongmu-4 / Msa1122660

KEGG: -
GO: -
PFAM: PF00891.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122660	XP_027333989.1	61.039	231	89	1	1	231	140	369	9.53e-102	310

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122660	sp\|I1M2U5\|NAMT1_SOYBN	53.247	231	107	1	1	231	126	355	1.36e-91	276

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122660	A0A445B558	58.874	231	94	1	1	231	137	366	3.58e-101	307

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029020	Msa1122660	-0.820233	7.643937e-53	-8.615850e-47
Msa0715310	Msa1122660	0.804709	1.896784e-49	-8.615850e-47
Msa0719490	Msa1122660	-0.815630	8.377935e-52	-8.615850e-47
Msa0748610	Msa1122660	0.810164	1.320791e-50	-8.615850e-47
Msa0749550	Msa1122660	0.822078	2.871632e-53	-8.615850e-47
Msa0749610	Msa1122660	0.804551	2.046188e-49	-8.615850e-47
Msa0792170	Msa1122660	0.811711	6.105761e-51	-8.615850e-47
Msa0792510	Msa1122660	0.806833	6.789980e-50	-8.615850e-47
Msa0142240	Msa1122660	0.812121	4.972418e-51	-8.615850e-47
Msa0201330	Msa1122660	0.830279	3.212317e-55	-8.615850e-47
Msa0201370	Msa1122660	0.810312	1.227140e-50	-8.615850e-47
Msa0208390	Msa1122660	0.806741	7.099399e-50	-8.615850e-47
Msa0416800	Msa1122660	0.811595	6.471469e-51	-8.615850e-47
Msa0418000	Msa1122660	0.806858	6.705787e-50	-8.615850e-47
Msa0457370	Msa1122660	0.805246	1.464432e-49	-8.615850e-47
Msa0463460	Msa1122660	0.808163	3.544280e-50	-8.615850e-47
Msa0981010	Msa1122660	0.802642	5.093169e-49	-8.615850e-47
Msa1008490	Msa1122660	0.809735	1.633255e-50	-8.615850e-47
Msa1009000	Msa1122660	0.827158	1.825773e-54	-8.615850e-47
Msa1036210	Msa1122660	0.839962	1.157478e-57	-8.615850e-47
Msa1036390	Msa1122660	0.820484	6.692907e-53	-8.615850e-47
Msa1044090	Msa1122660	0.806663	7.374007e-50	-8.615850e-47
Msa1076450	Msa1122660	0.811122	8.196292e-51	-8.615850e-47
Msa1076460	Msa1122660	0.840508	8.334700e-58	-8.615850e-47
Msa1076470	Msa1122660	0.817946	2.532351e-52	-8.615850e-47
Msa1076480	Msa1122660	0.888953	3.734903e-73	-8.615850e-47
Msa1076680	Msa1122660	0.819778	9.715735e-53	-8.615850e-47
Msa1081600	Msa1122660	0.811412	7.093351e-51	-8.615850e-47
Msa1083410	Msa1122660	0.821905	3.149618e-53	-8.615850e-47
Msa1098560	Msa1122660	0.828413	9.115628e-55	-8.615850e-47
Msa0243910	Msa1122660	0.841481	4.629318e-58	-8.615850e-47
Msa0243930	Msa1122660	0.821469	3.971133e-53	-8.615850e-47
Msa0269360	Msa1122660	0.820126	8.084959e-53	-8.615850e-47
Msa0282590	Msa1122660	0.824986	5.993745e-54	-8.615850e-47
Msa0342200	Msa1122660	0.801671	8.067484e-49	-8.615850e-47
Msa1122660	Msa1125040	0.800640	1.310681e-48	-8.615850e-47
Msa1122660	Msa1128160	0.807226	5.606488e-50	-8.615850e-47
Msa1122660	Msa1139240	0.801805	7.569718e-49	-8.615850e-47
Msa1122660	Msa1157170	0.813132	2.988483e-51	-8.615850e-47
Msa1122660	Msa1165360	0.806222	9.132999e-50	-8.615850e-47
Msa1122660	Msa1166370	0.812776	3.575873e-51	-8.615850e-47
Msa1122660	Msa1188420	0.801408	9.134271e-49	-8.615850e-47
Msa1122660	Msa1220710	0.802845	4.624818e-49	-8.615850e-47
Msa1122660	Msa1228210	0.823224	1.554421e-53	-8.615850e-47
Msa1122660	Msa1267200	0.828243	1.001928e-54	-8.615850e-47
Msa1122660	Msa1271280	0.849838	2.500465e-60	-8.615850e-47
Msa1122660	Msa1271300	0.827114	1.870865e-54	-8.615850e-47
Msa1122660	Msa1284140	0.810912	9.102225e-51	-8.615850e-47
Msa1122660	Msa1329990	0.806594	7.625598e-50	-8.615850e-47
Msa1122660	Msa1373950	0.806388	8.427007e-50	-8.615850e-47
Msa1122660	Msa1423080	0.804303	2.305216e-49	-8.615850e-47
Msa1122660	Msa1438270	0.812369	4.388802e-51	-8.615850e-47
Msa0509020	Msa1122660	0.804872	1.753791e-49	-8.615850e-47
Msa0510370	Msa1122660	0.800182	1.625069e-48	-8.615850e-47
Msa0557680	Msa1122660	0.808433	3.104796e-50	-8.615850e-47
Msa0591780	Msa1122660	0.809911	1.497559e-50	-8.615850e-47
Msa0847390	Msa1122660	0.815061	1.121078e-51	-8.615850e-47
Msa0880080	Msa1122660	0.807407	5.132203e-50	-8.615850e-47
Msa0902980	Msa1122660	0.817742	2.816075e-52	-8.615850e-47
Msa0921630	Msa1122660	0.815001	1.156309e-51	-8.615850e-47
Msa0951720	Msa1122660	0.816116	6.528161e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122660	MtrunA17_Chr3g0130011	57.576	231	97	1	1	231	129	358	3.35e-101	298
Msa1122660	MtrunA17_Chr3g0130061	56.277	231	100	1	1	231	129	358	5.17e-100	295
Msa1122660	MtrunA17_Chr2g0314271	50.649	231	113	1	1	231	125	354	7.72e-88	263
Msa1122660	MtrunA17_Chr2g0307521	41.395	215	120	4	4	217	139	348	7.03e-51	169
Msa1122660	MtrunA17_Chr7g0218181	40.845	213	120	4	4	215	143	350	7.17e-51	169
Msa1122660	MtrunA17_Chr1g0163611	40.517	232	129	7	4	231	144	370	1.05e-50	169
Msa1122660	MtrunA17_Chr7g0218301	41.589	214	119	4	3	215	150	358	1.19e-50	169
Msa1122660	MtrunA17_Chr1g0163621	40.343	233	132	5	2	231	156	384	2.45e-50	168
Msa1122660	MtrunA17_Chr7g0218271	41.204	216	121	4	1	215	148	358	9.55e-50	166
Msa1122660	MtrunA17_Chr1g0163601	40.000	220	127	4	4	222	144	359	8.62e-49	164
Msa1122660	MtrunA17_Chr7g0218131	39.352	216	125	4	1	215	143	353	4.36e-47	159
Msa1122660	MtrunA17_Chr1g0200491	38.140	215	129	3	1	215	145	355	1.14e-46	158
Msa1122660	MtrunA17_Chr3g0128011	37.004	227	138	5	1	227	191	412	1.57e-46	159
Msa1122660	MtrunA17_Chr8g0367441	39.623	212	124	4	1	212	151	358	8.88e-46	156
Msa1122660	MtrunA17_Chr7g0218211	38.785	214	125	4	3	215	144	352	1.34e-45	155
Msa1122660	MtrunA17_Chr5g0448091	35.965	228	142	4	4	231	140	363	1.12e-44	153
Msa1122660	MtrunA17_Chr7g0276411	38.140	215	129	4	1	215	136	346	6.38e-44	151
Msa1122660	MtrunA17_Chr8g0345851	36.283	226	134	5	1	220	64	285	6.59e-44	149
Msa1122660	MtrunA17_Chr7g0218261	37.788	217	131	3	1	217	141	353	1.12e-43	150
Msa1122660	MtrunA17_Chr7g0276401	35.217	230	145	4	2	231	150	375	7.88e-43	148
Msa1122660	MtrunA17_Chr8g0367491	35.349	215	135	4	1	215	150	360	2.20e-42	147
Msa1122660	MtrunA17_Chr8g0367451	37.500	216	131	4	1	216	150	361	3.54e-41	144
Msa1122660	MtrunA17_Chr3g0085201	36.889	225	133	4	8	228	138	357	4.60e-40	140
Msa1122660	MtrunA17_Chr8g0367381	39.344	183	108	3	18	200	148	327	1.01e-39	139
Msa1122660	MtrunA17_Chr3g0085211	36.493	211	129	3	3	213	146	351	4.43e-39	138
Msa1122660	MtrunA17_Chr8g0367501	36.279	215	133	4	1	215	137	347	2.36e-38	137
Msa1122660	MtrunA17_Chr6g0482291	39.024	164	89	3	49	212	5	157	7.53e-35	122
Msa1122660	MtrunA17_Chr4g0022021	39.175	194	108	6	39	228	178	365	4.25e-33	122
Msa1122660	MtrunA17_Chr4g0021981	36.458	192	114	6	40	228	179	365	1.78e-29	113
Msa1122660	MtrunA17_Chr3g0121301	30.973	226	152	4	4	227	134	357	4.84e-27	106
Msa1122660	MtrunA17_Chr1g0188391	30.806	211	137	5	24	230	155	360	6.08e-26	103
Msa1122660	MtrunA17_Chr4g0046531	31.579	209	136	4	25	230	513	717	1.30e-25	104
Msa1122660	MtrunA17_Chr4g0046531	31.472	197	128	4	25	218	151	343	2.02e-22	95.5
Msa1122660	MtrunA17_Chr7g0223241	31.553	206	134	4	26	228	146	347	2.59e-25	101
Msa1122660	MtrunA17_Chr4g0046361	30.357	224	147	5	12	230	141	360	1.78e-24	99.4
Msa1122660	MtrunA17_Chr8g0367401	49.462	93	46	1	39	131	19	110	1.86e-24	94.7
Msa1122660	MtrunA17_Chr5g0432251	31.193	218	141	6	1	213	128	341	9.55e-24	97.4
Msa1122660	MtrunA17_Chr5g0432261	30.876	217	130	6	1	213	109	309	1.09e-22	94.4
Msa1122660	MtrunA17_Chr1g0188371	32.065	184	117	5	40	219	169	348	5.03e-22	93.2
Msa1122660	MtrunA17_Chr7g0223231	30.542	203	134	4	29	228	149	347	5.52e-22	92.4
Msa1122660	MtrunA17_Chr4g0040621	29.741	232	154	6	2	228	139	366	2.02e-21	91.3
Msa1122660	MtrunA17_Chr5g0432241	32.967	182	109	6	39	213	167	342	3.66e-21	90.5
Msa1122660	MtrunA17_Chr4g0046341	29.911	224	148	5	12	230	144	363	1.98e-20	88.6
Msa1122660	MtrunA17_Chr5g0432211	29.091	220	143	7	1	213	114	327	2.35e-20	88.2
Msa1122660	MtrunA17_Chr4g0014681	30.851	188	123	4	8	190	139	324	3.75e-20	87.8
Msa1122660	MtrunA17_Chr4g0014561	30.851	188	123	4	8	190	139	324	9.09e-20	86.7
Msa1122660	MtrunA17_Chr5g0432301	30.137	219	140	7	1	212	129	341	2.29e-19	85.5
Msa1122660	MtrunA17_Chr7g0219161	29.947	187	123	4	29	212	157	338	2.71e-19	85.1
Msa1122660	MtrunA17_Chr7g0219141	32.370	173	105	6	63	230	191	356	6.75e-19	84.0
Msa1122660	MtrunA17_Chr1g0170941	51.948	77	36	1	53	129	1	76	1.98e-18	77.0
Msa1122660	MtrunA17_Chr4g0014641	29.255	188	126	4	8	190	139	324	1.03e-17	80.9
Msa1122660	MtrunA17_Chr4g0014661	30.645	186	122	4	12	192	137	320	9.67e-17	78.2
Msa1122660	MtrunA17_Chr8g0367421	39.785	93	38	1	39	131	19	93	2.43e-14	67.4
Msa1122660	MtrunA17_Chr7g0219171	29.630	135	88	3	99	230	117	247	6.30e-14	68.9
Msa1122660	MtrunA17_Chr4g0014591	32.143	140	91	3	12	149	137	274	6.56e-14	70.1
Msa1122660	MtrunA17_Chr8g0367471	46.667	60	31	1	54	113	10	68	3.32e-13	63.5
Msa1122660	MtrunA17_Chr8g0367461	35.106	94	59	2	120	213	3	94	4.07e-13	63.9
Msa1122660	MtrunA17_Chr4g0014601	33.077	130	83	3	12	138	137	265	2.61e-12	64.7
Msa1122660	MtrunA17_Chr1g0170951	42.424	66	36	1	147	212	23	86	7.04e-12	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122660	AT3G53140.1	51.082	231	112	1	1	231	130	359	1.15e-86	261
Msa1122660	AT5G54160.1	40.566	212	122	4	1	212	135	342	3.13e-49	165
Msa1122660	AT1G33030.1	36.404	228	142	3	4	231	126	350	3.60e-43	149
Msa1122660	AT1G51990.1	35.111	225	141	5	4	227	137	357	9.01e-43	148
Msa1122660	AT1G51990.2	34.667	225	142	5	4	227	137	357	1.45e-41	145
Msa1122660	AT1G77520.1	32.900	231	150	5	2	231	155	381	5.59e-36	130
Msa1122660	AT5G53810.1	36.239	218	132	7	1	216	151	363	1.16e-33	124
Msa1122660	AT1G77530.1	35.565	239	135	9	1	231	154	381	2.42e-33	124
Msa1122660	AT5G37170.2	33.333	231	146	7	6	231	7	234	5.35e-33	119
Msa1122660	AT5G37170.1	36.082	194	119	5	40	231	144	334	2.43e-31	117
Msa1122660	AT5G37170.3	37.430	179	107	5	55	231	11	186	5.02e-31	113
Msa1122660	AT1G63140.2	32.035	231	154	3	1	231	154	381	9.11e-31	117
Msa1122660	AT1G63140.4	32.035	231	154	3	1	231	174	401	9.95e-31	117
Msa1122660	AT1G62900.1	34.197	193	125	2	39	231	15	205	9.57e-30	110
Msa1122660	AT1G21100.1	34.802	227	143	4	1	227	147	368	9.65e-30	114
Msa1122660	AT1G21130.1	34.802	227	143	4	1	227	147	368	2.47e-29	113
Msa1122660	AT1G21110.1	34.802	227	143	4	1	227	147	368	3.43e-29	112
Msa1122660	AT1G21120.1	34.361	227	144	4	1	227	147	368	2.06e-28	110
Msa1122660	AT1G21120.2	34.361	227	144	4	1	227	195	416	3.73e-28	110
Msa1122660	AT1G76790.1	34.375	224	140	6	1	223	139	356	1.61e-26	105
Msa1122660	AT4G35150.1	36.250	160	91	6	63	214	151	307	7.45e-21	89.4
Msa1122660	AT1G33030.3	37.121	132	82	1	4	135	126	256	8.51e-20	85.9
Msa1122660	AT1G33030.2	37.500	128	79	1	4	131	126	252	1.13e-18	82.4
Msa1122660	AT4G35160.1	30.252	238	148	8	4	227	144	377	1.25e-18	84.0
Msa1122660	AT1G63140.1	35.878	131	82	2	1	131	174	302	2.84e-16	76.6
Msa1122660	AT1G21130.2	41.985	131	73	2	1	131	147	274	1.17e-15	74.7

Find 84 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATGCACTTGCAACAATTTC+GGG	0.208479	7_3:-73107337	None:intergenic
AATAGTTAATAAGGATAATT+TGG	0.212935	7_3:+73108781	Msa1122660:three_prime_UTR
TGTTCCATATAATCTTATTT+TGG	0.230280	7_3:+73108525	Msa1122660:three_prime_UTR
AAAACCAAAATAAGATTATA+TGG	0.250414	7_3:-73108529	None:intergenic
AAACTAACCAATAGTTAATA+AGG	0.261463	7_3:+73108772	Msa1122660:three_prime_UTR
GGATGCACTTGCAACAATTT+CGG	0.264494	7_3:-73107338	None:intergenic
CATTTCTTTGCAGATTATAA+TGG	0.291703	7_3:+73107273	Msa1122660:CDS
TTGATTCCCTTGCTAATGTT+TGG	0.298354	7_3:-73107304	None:intergenic
CCACTTGCAGTGGTTGTGTT+TGG	0.298953	7_3:+73108148	Msa1122660:intron
CACTTGCAGTGGTTGTGTTT+GGG	0.301970	7_3:+73108149	Msa1122660:intron
GTAGTGTGCAGAGTATTAAT+TGG	0.305171	7_3:-73108730	None:intergenic
AAATTATCCTTATTAACTAT+TGG	0.314472	7_3:-73108779	None:intergenic
GATGAACTTTGACCTTTATC+AGG	0.326389	7_3:-73108057	None:intergenic
CTGGTTCCCCGTTCACCTTT+CGG	0.327183	7_3:-73107099	None:intergenic
GCCACTGAGTTTGTTCCTCC+TGG	0.367726	7_3:+73108025	Msa1122660:CDS
AACCATTCCGAAAGGTGAAC+GGG	0.369706	7_3:+73107092	Msa1122660:CDS
TGATTCCCTTGCTAATGTTT+GGG	0.371395	7_3:-73107303	None:intergenic
AAACAGCTGGGTGTGGCTGC+TGG	0.376698	7_3:+73108374	Msa1122660:CDS
GAATTGCCATCGCACTCTTC+CGG	0.392975	7_3:+73108208	Msa1122660:CDS
TTTCGGAATGGTTCTGTGGA+TGG	0.400183	7_3:-73107082	None:intergenic
AACTAGTATACCTGGGAGTT+GGG	0.411741	7_3:-73107359	None:intergenic
GTGCTTTCGTCCGTCACCTC+TGG	0.424029	7_3:-73108266	None:intergenic
AAACTAGTATACCTGGGAGT+TGG	0.430030	7_3:-73107360	None:intergenic
GGTCCTCAACCACGTCCTTA+AGG	0.435556	7_3:-73107060	None:intergenic
TGGAGACGCTATCCTGATAA+AGG	0.450510	7_3:+73108045	Msa1122660:CDS
AGTCTTTCAGATTGAATAAG+TGG	0.452614	7_3:+73108466	Msa1122660:three_prime_UTR
TGAAAAGGAGTTCAAACAGC+TGG	0.457935	7_3:+73108361	Msa1122660:CDS
TTCGGAATGGTTCTGTGGAT+GGG	0.463389	7_3:-73107081	None:intergenic
TATTGCATTGGAAACTGAAA+GGG	0.474373	7_3:-73108680	None:intergenic
TCTCCTTAAGGACGTGGTTG+AGG	0.475785	7_3:+73107057	Msa1122660:CDS
TCCCCGTTCACCTTTCGGAA+TGG	0.477319	7_3:-73107094	None:intergenic
AGCAAAACATAGAACTGAAA+AGG	0.478672	7_3:+73108346	Msa1122660:CDS
TTTACGTAAAAGTCATGTGC+TGG	0.488023	7_3:-73107118	None:intergenic
AGTGGATGTCAGAGGCAATA+CGG	0.490770	7_3:+73107249	Msa1122660:CDS
CATCGCACTCTTCCGGCGCA+TGG	0.492823	7_3:+73108215	Msa1122660:CDS
TCCGTCACCTCTGGCAGCAC+AGG	0.497598	7_3:-73108257	None:intergenic
GAATCATACGATGGGTTTCG+TGG	0.501624	7_3:+73107214	Msa1122660:CDS
TCGTGGTGTGGAAACTTTAG+TGG	0.510458	7_3:+73107231	Msa1122660:CDS
GAGAGTAACATTTGCTTGAG+TGG	0.515398	7_3:+73108888	Msa1122660:three_prime_UTR
ACTTATTCAATCTGAAAGAC+TGG	0.518427	7_3:-73108464	None:intergenic
GTCTTCATGATGACCATGTA+CGG	0.525468	7_3:+73108317	Msa1122660:CDS
TCCTGTGCTGCCAGAGGTGA+CGG	0.530070	7_3:+73108256	Msa1122660:CDS
CACCTTTCGGAATGGTTCTG+TGG	0.531270	7_3:-73107086	None:intergenic
GTAACATTTGCTTGAGTGGT+GGG	0.532868	7_3:+73108892	Msa1122660:three_prime_UTR
GTGTGCAGAGTATTAATTGG+AGG	0.535983	7_3:-73108727	None:intergenic
GGACGAAAGCACCAGGTCAA+AGG	0.536548	7_3:+73108277	Msa1122660:CDS
GTGGATGTCAGAGGCAATAC+GGG	0.539319	7_3:+73107250	Msa1122660:CDS
CTGGCCTCTCCTTAAGGACG+TGG	0.540481	7_3:+73107051	Msa1122660:CDS
TTTATCAGGATAGCGTCTCC+AGG	0.543527	7_3:-73108043	None:intergenic
GGTCAAAGGCTTTGCTAGGT+GGG	0.544296	7_3:+73108291	Msa1122660:CDS
ATACGATGGGTTTCGTGGTG+TGG	0.545668	7_3:+73107219	Msa1122660:CDS
ATTATAAGTTTGCCATGCGC+CGG	0.546826	7_3:-73108227	None:intergenic
TTATTGCATTGGAAACTGAA+AGG	0.548694	7_3:-73108681	None:intergenic
CAGTGGCATCACCACCAACA+TGG	0.551519	7_3:-73108009	None:intergenic
CACGTCCTTAAGGAGAGGCC+AGG	0.564870	7_3:-73107050	None:intergenic
AGTAACATTTGCTTGAGTGG+TGG	0.565567	7_3:+73108891	Msa1122660:three_prime_UTR
ATTGAATAAGTGGAGCATGT+TGG	0.574143	7_3:+73108476	Msa1122660:three_prime_UTR
TAAATTCCCAAACATTAGCA+AGG	0.576073	7_3:+73107297	Msa1122660:CDS
GGAGTTCAAACAGCTGGGTG+TGG	0.577947	7_3:+73108367	Msa1122660:CDS
TATATAGGCATAACCCATGT+TGG	0.581114	7_3:+73107995	Msa1122660:intron
AGGTGACGGACGAAAGCACC+AGG	0.581942	7_3:+73108270	Msa1122660:CDS
GAAAAGGAGTTCAAACAGCT+GGG	0.589404	7_3:+73108362	Msa1122660:CDS
AGGTCAAAGGCTTTGCTAGG+TGG	0.592128	7_3:+73108290	Msa1122660:CDS
GCAAGTGCATCCCAACTCCC+AGG	0.592348	7_3:+73107349	Msa1122660:CDS
ACCTAGCAAAGCCTTTGACC+TGG	0.598918	7_3:-73108288	None:intergenic
GAACCATTCCGAAAGGTGAA+CGG	0.599486	7_3:+73107091	Msa1122660:CDS
TCTTCATGATGACCATGTAC+GGG	0.603036	7_3:+73108318	Msa1122660:CDS
ATAGGCATAACCCATGTTGG+TGG	0.606921	7_3:+73107998	Msa1122660:intron
ACCAGGTCAAAGGCTTTGCT+AGG	0.608746	7_3:+73108287	Msa1122660:CDS
TAACATTTGCTTGAGTGGTG+GGG	0.622263	7_3:+73108893	Msa1122660:three_prime_UTR
TGTGCAGAGTATTAATTGGA+GGG	0.627382	7_3:-73108726	None:intergenic
CATGCGCCGGAAGAGTGCGA+TGG	0.635476	7_3:-73108214	None:intergenic
AAATTCCCAAACATTAGCAA+GGG	0.640329	7_3:+73107298	Msa1122660:CDS
AGTGGCATCACCACCAACAT+GGG	0.643457	7_3:-73108008	None:intergenic
AATGTAGTACAAGTATGATG+AGG	0.653093	7_3:+73108186	Msa1122660:CDS
TCAACCACGTCCTTAAGGAG+AGG	0.660229	7_3:-73107055	None:intergenic
ATCCACAGAACCATTCCGAA+AGG	0.665367	7_3:+73107084	Msa1122660:CDS
GAAACTTTAGTGGATGTCAG+AGG	0.681953	7_3:+73107241	Msa1122660:CDS
GATTGTTGTAGCGAGTACGT+TGG	0.683334	7_3:+73108498	Msa1122660:three_prime_UTR
ACCATTCCGAAAGGTGAACG+GGG	0.685128	7_3:+73107093	Msa1122660:CDS
ATGCACTTGCAACAATTTCG+GGG	0.690506	7_3:-73107336	None:intergenic
TTGTGATCCTGTGCTGCCAG+AGG	0.692848	7_3:+73108250	Msa1122660:CDS
ATCAGGATAGCGTCTCCAGG+AGG	0.718508	7_3:-73108040	None:intergenic
TCCAGGAGGAACAAACTCAG+TGG	0.725727	7_3:-73108026	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GGTTATTATTATTATTTTTT+CGG	+	chr7_3:73107574-73107593	Msa1122660:intron	10.0%
!!	GAATAAATTAAAAAAAATTG+AGG	-	chr7_3:73108930-73108949	None:intergenic	10.0%
!!!	GGTTATTATTATTATTTTTT+CGG	+	chr7_3:73107574-73107593	Msa1122660:intron	10.0%
!!	GAATAAATTAAAAAAAATTG+AGG	-	chr7_3:73108930-73108949	None:intergenic	10.0%
!!!	TAAAAATTCGTTTTTACAAA+AGG	+	chr7_3:73107536-73107555	Msa1122660:intron	15.0%
!!!	AAGTGTTGTTAATTTTTTTA+GGG	+	chr7_3:73107620-73107639	Msa1122660:intron	15.0%
!!	AAAATATTTGCAAGTATATA+TGG	-	chr7_3:73107942-73107961	None:intergenic	15.0%
!!	AAAACCAAAATAAGATTATA+TGG	-	chr7_3:73108532-73108551	None:intergenic	15.0%
!!!	TAGTTTTAAAAGTAATACTT+TGG	-	chr7_3:73108758-73108777	None:intergenic	15.0%
!!	AAATTATCCTTATTAACTAT+TGG	-	chr7_3:73108782-73108801	None:intergenic	15.0%
!!	AATAGTTAATAAGGATAATT+TGG	+	chr7_3:73108781-73108800	Msa1122660:three_prime_UTR	15.0%
!!!	TAAAAATTCGTTTTTACAAA+AGG	+	chr7_3:73107536-73107555	Msa1122660:intron	15.0%
!!!	AAGTGTTGTTAATTTTTTTA+GGG	+	chr7_3:73107620-73107639	Msa1122660:intron	15.0%
!!	AAAATATTTGCAAGTATATA+TGG	-	chr7_3:73107942-73107961	None:intergenic	15.0%
!!	AAAACCAAAATAAGATTATA+TGG	-	chr7_3:73108532-73108551	None:intergenic	15.0%
!!!	TAGTTTTAAAAGTAATACTT+TGG	-	chr7_3:73108758-73108777	None:intergenic	15.0%
!!	AAATTATCCTTATTAACTAT+TGG	-	chr7_3:73108782-73108801	None:intergenic	15.0%
!!	AATAGTTAATAAGGATAATT+TGG	+	chr7_3:73108781-73108800	Msa1122660:three_prime_UTR	15.0%
!!!	TTGTTTAACAAAGCTTTTAT+TGG	+	chr7_3:73107160-73107179	Msa1122660:CDS	20.0%
!!!	GAAGTGTTGTTAATTTTTTT+AGG	+	chr7_3:73107619-73107638	Msa1122660:intron	20.0%
!!!	AACCGCTTATTTTTTTTTTT+AGG	+	chr7_3:73107804-73107823	Msa1122660:intron	20.0%
!!!	ACCGCTTATTTTTTTTTTTA+GGG	+	chr7_3:73107805-73107824	Msa1122660:intron	20.0%
!!	TACACTTATACTTAAAAGTA+GGG	-	chr7_3:73107874-73107893	None:intergenic	20.0%
!!	ATACACTTATACTTAAAAGT+AGG	-	chr7_3:73107875-73107894	None:intergenic	20.0%
!!	CATAATCATATTGCATATAT+AGG	+	chr7_3:73107980-73107999	Msa1122660:intron	20.0%
!!!	ATAACGTTTTTAATTCAAGT+GGG	-	chr7_3:73108082-73108101	None:intergenic	20.0%
!!!	TATAACGTTTTTAATTCAAG+TGG	-	chr7_3:73108083-73108102	None:intergenic	20.0%
!!!	TGTTCCATATAATCTTATTT+TGG	+	chr7_3:73108525-73108544	Msa1122660:three_prime_UTR	20.0%
!!	AGAAAAAGTTATTATTGCAT+TGG	-	chr7_3:73108695-73108714	None:intergenic	20.0%
!!	AAACTAACCAATAGTTAATA+AGG	+	chr7_3:73108772-73108791	Msa1122660:three_prime_UTR	20.0%
!!	ATTAAAAAAAATTGAGGTGT+GGG	-	chr7_3:73108924-73108943	None:intergenic	20.0%
!!	AATTAAAAAAAATTGAGGTG+TGG	-	chr7_3:73108925-73108944	None:intergenic	20.0%
!!!	TTGTTTAACAAAGCTTTTAT+TGG	+	chr7_3:73107160-73107179	Msa1122660:CDS	20.0%
!!!	GAAGTGTTGTTAATTTTTTT+AGG	+	chr7_3:73107619-73107638	Msa1122660:intron	20.0%
!!!	AACCGCTTATTTTTTTTTTT+AGG	+	chr7_3:73107804-73107823	Msa1122660:intron	20.0%
!!!	ACCGCTTATTTTTTTTTTTA+GGG	+	chr7_3:73107805-73107824	Msa1122660:intron	20.0%
!!	TACACTTATACTTAAAAGTA+GGG	-	chr7_3:73107874-73107893	None:intergenic	20.0%
!!	ATACACTTATACTTAAAAGT+AGG	-	chr7_3:73107875-73107894	None:intergenic	20.0%
!!	CATAATCATATTGCATATAT+AGG	+	chr7_3:73107980-73107999	Msa1122660:intron	20.0%
!!!	ATAACGTTTTTAATTCAAGT+GGG	-	chr7_3:73108082-73108101	None:intergenic	20.0%
!!!	TATAACGTTTTTAATTCAAG+TGG	-	chr7_3:73108083-73108102	None:intergenic	20.0%
!!!	TGTTCCATATAATCTTATTT+TGG	+	chr7_3:73108525-73108544	Msa1122660:three_prime_UTR	20.0%
!!	AGAAAAAGTTATTATTGCAT+TGG	-	chr7_3:73108695-73108714	None:intergenic	20.0%
!!	AAACTAACCAATAGTTAATA+AGG	+	chr7_3:73108772-73108791	Msa1122660:three_prime_UTR	20.0%
!!	ATTAAAAAAAATTGAGGTGT+GGG	-	chr7_3:73108924-73108943	None:intergenic	20.0%
!!	AATTAAAAAAAATTGAGGTG+TGG	-	chr7_3:73108925-73108944	None:intergenic	20.0%
!!	AACTTCTCTAAAAAATGGAA+TGG	-	chr7_3:73107191-73107210	None:intergenic	25.0%
!!!	TCCATTTTTTAGAGAAGTTT+TGG	+	chr7_3:73107192-73107211	Msa1122660:CDS	25.0%
!!	TCCAAAACTTCTCTAAAAAA+TGG	-	chr7_3:73107196-73107215	None:intergenic	25.0%
!	CATTTCTTTGCAGATTATAA+TGG	+	chr7_3:73107273-73107292	Msa1122660:CDS	25.0%
!!!	ACTTTAAAACTAGTATACCT+GGG	-	chr7_3:73107369-73107388	None:intergenic	25.0%
!!!	TACTTTAAAACTAGTATACC+TGG	-	chr7_3:73107370-73107389	None:intergenic	25.0%
!!!	CGATGTAGATATTTTTAGAT+TGG	+	chr7_3:73107390-73107409	Msa1122660:intron	25.0%
!!	TAATAATAAAGCCCTCATTT+TGG	-	chr7_3:73107505-73107524	None:intergenic	25.0%
!!!	AAATTCGTTTTTACAAAAGG+TGG	+	chr7_3:73107539-73107558	Msa1122660:intron	25.0%
!	CCCCTAAAAAAAAAAATAAG+CGG	-	chr7_3:73107809-73107828	None:intergenic	25.0%
!!!	CCGCTTATTTTTTTTTTTAG+GGG	+	chr7_3:73107806-73107825	Msa1122660:intron	25.0%
!!!	AAACGACACTTATTTTGAAA+CGG	+	chr7_3:73108864-73108883	Msa1122660:three_prime_UTR	25.0%
!!	AACTTCTCTAAAAAATGGAA+TGG	-	chr7_3:73107191-73107210	None:intergenic	25.0%
!!!	TCCATTTTTTAGAGAAGTTT+TGG	+	chr7_3:73107192-73107211	Msa1122660:CDS	25.0%
!!	TCCAAAACTTCTCTAAAAAA+TGG	-	chr7_3:73107196-73107215	None:intergenic	25.0%
!	CATTTCTTTGCAGATTATAA+TGG	+	chr7_3:73107273-73107292	Msa1122660:CDS	25.0%
!!!	ACTTTAAAACTAGTATACCT+GGG	-	chr7_3:73107369-73107388	None:intergenic	25.0%
!!!	TACTTTAAAACTAGTATACC+TGG	-	chr7_3:73107370-73107389	None:intergenic	25.0%
!!!	CGATGTAGATATTTTTAGAT+TGG	+	chr7_3:73107390-73107409	Msa1122660:intron	25.0%
!!	TAATAATAAAGCCCTCATTT+TGG	-	chr7_3:73107505-73107524	None:intergenic	25.0%
!!!	AAATTCGTTTTTACAAAAGG+TGG	+	chr7_3:73107539-73107558	Msa1122660:intron	25.0%
!	CCCCTAAAAAAAAAAATAAG+CGG	-	chr7_3:73107809-73107828	None:intergenic	25.0%
!!!	CCGCTTATTTTTTTTTTTAG+GGG	+	chr7_3:73107806-73107825	Msa1122660:intron	25.0%
!!!	AAACGACACTTATTTTGAAA+CGG	+	chr7_3:73108864-73108883	Msa1122660:three_prime_UTR	25.0%
!!!	AAGTTTTGGAATCATACGAT+GGG	+	chr7_3:73107206-73107225	Msa1122660:CDS	30.0%
	TAAATTCCCAAACATTAGCA+AGG	+	chr7_3:73107297-73107316	Msa1122660:CDS	30.0%
	AAATTCCCAAACATTAGCAA+GGG	+	chr7_3:73107298-73107317	Msa1122660:CDS	30.0%
!	TTATTAGGTTGCCTTATGTT+TGG	+	chr7_3:73107843-73107862	Msa1122660:intron	30.0%
!	TATTAGGTTGCCTTATGTTT+GGG	+	chr7_3:73107844-73107863	Msa1122660:intron	30.0%
	CTTATACTTAAAAGTAGGGT+CGG	-	chr7_3:73107870-73107889	None:intergenic	30.0%
	AATTAATATTCCACTTGCAG+TGG	+	chr7_3:73108138-73108157	Msa1122660:intron	30.0%
	AATGTAGTACAAGTATGATG+AGG	+	chr7_3:73108186-73108205	Msa1122660:CDS	30.0%
	AGCAAAACATAGAACTGAAA+AGG	+	chr7_3:73108346-73108365	Msa1122660:CDS	30.0%
!	TGATGCATACATGACATTTT+TGG	+	chr7_3:73108424-73108443	Msa1122660:CDS	30.0%
	ACTTATTCAATCTGAAAGAC+TGG	-	chr7_3:73108467-73108486	None:intergenic	30.0%
	AGTCTTTCAGATTGAATAAG+TGG	+	chr7_3:73108466-73108485	Msa1122660:three_prime_UTR	30.0%
	TATTGCATTGGAAACTGAAA+GGG	-	chr7_3:73108683-73108702	None:intergenic	30.0%
	TTATTGCATTGGAAACTGAA+AGG	-	chr7_3:73108684-73108703	None:intergenic	30.0%
!!!	AAGTTTTGGAATCATACGAT+GGG	+	chr7_3:73107206-73107225	Msa1122660:CDS	30.0%
	TAAATTCCCAAACATTAGCA+AGG	+	chr7_3:73107297-73107316	Msa1122660:CDS	30.0%
	AAATTCCCAAACATTAGCAA+GGG	+	chr7_3:73107298-73107317	Msa1122660:CDS	30.0%
!	TTATTAGGTTGCCTTATGTT+TGG	+	chr7_3:73107843-73107862	Msa1122660:intron	30.0%
!	TATTAGGTTGCCTTATGTTT+GGG	+	chr7_3:73107844-73107863	Msa1122660:intron	30.0%
	CTTATACTTAAAAGTAGGGT+CGG	-	chr7_3:73107870-73107889	None:intergenic	30.0%
	AATTAATATTCCACTTGCAG+TGG	+	chr7_3:73108138-73108157	Msa1122660:intron	30.0%
	AATGTAGTACAAGTATGATG+AGG	+	chr7_3:73108186-73108205	Msa1122660:CDS	30.0%
	AGCAAAACATAGAACTGAAA+AGG	+	chr7_3:73108346-73108365	Msa1122660:CDS	30.0%
!	TGATGCATACATGACATTTT+TGG	+	chr7_3:73108424-73108443	Msa1122660:CDS	30.0%
	ACTTATTCAATCTGAAAGAC+TGG	-	chr7_3:73108467-73108486	None:intergenic	30.0%
	AGTCTTTCAGATTGAATAAG+TGG	+	chr7_3:73108466-73108485	Msa1122660:three_prime_UTR	30.0%
	TATTGCATTGGAAACTGAAA+GGG	-	chr7_3:73108683-73108702	None:intergenic	30.0%
	TTATTGCATTGGAAACTGAA+AGG	-	chr7_3:73108684-73108703	None:intergenic	30.0%
	TTTACGTAAAAGTCATGTGC+TGG	-	chr7_3:73107121-73107140	None:intergenic	35.0%
!!!	GAAGTTTTGGAATCATACGA+TGG	+	chr7_3:73107205-73107224	Msa1122660:CDS	35.0%
	TGATTCCCTTGCTAATGTTT+GGG	-	chr7_3:73107306-73107325	None:intergenic	35.0%
	TTGATTCCCTTGCTAATGTT+TGG	-	chr7_3:73107307-73107326	None:intergenic	35.0%
	TAAGTACTTGGCATTTAAGC+AGG	+	chr7_3:73107444-73107463	Msa1122660:intron	35.0%
	AAGTACTTGGCATTTAAGCA+GGG	+	chr7_3:73107445-73107464	Msa1122660:intron	35.0%
!!!	CTCATTTTGGTGTTTGCTTT+GGG	-	chr7_3:73107492-73107511	None:intergenic	35.0%
	CAAAGCAAACACCAAAATGA+GGG	+	chr7_3:73107491-73107510	Msa1122660:intron	35.0%
!	AAAAGGTGGTAGTGTTGTTA+TGG	+	chr7_3:73107553-73107572	Msa1122660:intron	35.0%
	CATATCGATATCTAGCAGAA+TGG	-	chr7_3:73107768-73107787	None:intergenic	35.0%
!!!	TTTTTTAGGGGTCTAAAGCA+AGG	+	chr7_3:73107818-73107837	Msa1122660:intron	35.0%
!!	TTTTTAGGGGTCTAAAGCAA+GGG	+	chr7_3:73107819-73107838	Msa1122660:intron	35.0%
!	GTCTAAAGCAAGGGTTTATT+AGG	+	chr7_3:73107828-73107847	Msa1122660:intron	35.0%
	TATATAGGCATAACCCATGT+TGG	+	chr7_3:73107995-73108014	Msa1122660:intron	35.0%
	GATGAACTTTGACCTTTATC+AGG	-	chr7_3:73108060-73108079	None:intergenic	35.0%
!!!	TTTTGGAGTATCACAAGTAG+CGG	+	chr7_3:73108441-73108460	Msa1122660:CDS	35.0%
	ATTGAATAAGTGGAGCATGT+TGG	+	chr7_3:73108476-73108495	Msa1122660:three_prime_UTR	35.0%
!!	AAGCGACACTCATTTTGAAA+CGG	-	chr7_3:73108628-73108647	None:intergenic	35.0%
!	TGTGCAGAGTATTAATTGGA+GGG	-	chr7_3:73108729-73108748	None:intergenic	35.0%
!	GTAGTGTGCAGAGTATTAAT+TGG	-	chr7_3:73108733-73108752	None:intergenic	35.0%
	TTTACGTAAAAGTCATGTGC+TGG	-	chr7_3:73107121-73107140	None:intergenic	35.0%
!!!	GAAGTTTTGGAATCATACGA+TGG	+	chr7_3:73107205-73107224	Msa1122660:CDS	35.0%
	TGATTCCCTTGCTAATGTTT+GGG	-	chr7_3:73107306-73107325	None:intergenic	35.0%
	TTGATTCCCTTGCTAATGTT+TGG	-	chr7_3:73107307-73107326	None:intergenic	35.0%
	TAAGTACTTGGCATTTAAGC+AGG	+	chr7_3:73107444-73107463	Msa1122660:intron	35.0%
	AAGTACTTGGCATTTAAGCA+GGG	+	chr7_3:73107445-73107464	Msa1122660:intron	35.0%
!!!	CTCATTTTGGTGTTTGCTTT+GGG	-	chr7_3:73107492-73107511	None:intergenic	35.0%
	CAAAGCAAACACCAAAATGA+GGG	+	chr7_3:73107491-73107510	Msa1122660:intron	35.0%
!	AAAAGGTGGTAGTGTTGTTA+TGG	+	chr7_3:73107553-73107572	Msa1122660:intron	35.0%
	CATATCGATATCTAGCAGAA+TGG	-	chr7_3:73107768-73107787	None:intergenic	35.0%
!!!	TTTTTTAGGGGTCTAAAGCA+AGG	+	chr7_3:73107818-73107837	Msa1122660:intron	35.0%
!!	TTTTTAGGGGTCTAAAGCAA+GGG	+	chr7_3:73107819-73107838	Msa1122660:intron	35.0%
!	GTCTAAAGCAAGGGTTTATT+AGG	+	chr7_3:73107828-73107847	Msa1122660:intron	35.0%
	TATATAGGCATAACCCATGT+TGG	+	chr7_3:73107995-73108014	Msa1122660:intron	35.0%
	GATGAACTTTGACCTTTATC+AGG	-	chr7_3:73108060-73108079	None:intergenic	35.0%
!!!	TTTTGGAGTATCACAAGTAG+CGG	+	chr7_3:73108441-73108460	Msa1122660:CDS	35.0%
	ATTGAATAAGTGGAGCATGT+TGG	+	chr7_3:73108476-73108495	Msa1122660:three_prime_UTR	35.0%
!!	AAGCGACACTCATTTTGAAA+CGG	-	chr7_3:73108628-73108647	None:intergenic	35.0%
!	TGTGCAGAGTATTAATTGGA+GGG	-	chr7_3:73108729-73108748	None:intergenic	35.0%
!	GTAGTGTGCAGAGTATTAAT+TGG	-	chr7_3:73108733-73108752	None:intergenic	35.0%
!	GAAACTTTAGTGGATGTCAG+AGG	+	chr7_3:73107241-73107260	Msa1122660:CDS	40.0%
	ATGCACTTGCAACAATTTCG+GGG	-	chr7_3:73107339-73107358	None:intergenic	40.0%
	GATGCACTTGCAACAATTTC+GGG	-	chr7_3:73107340-73107359	None:intergenic	40.0%
	GGATGCACTTGCAACAATTT+CGG	-	chr7_3:73107341-73107360	None:intergenic	40.0%
	AACTAGTATACCTGGGAGTT+GGG	-	chr7_3:73107362-73107381	None:intergenic	40.0%
	AAACTAGTATACCTGGGAGT+TGG	-	chr7_3:73107363-73107382	None:intergenic	40.0%
	GTACGTGACTGTTAAGTACT+TGG	+	chr7_3:73107432-73107451	Msa1122660:intron	40.0%
!!!	CCTCATTTTGGTGTTTGCTT+TGG	-	chr7_3:73107493-73107512	None:intergenic	40.0%
	CCAAAGCAAACACCAAAATG+AGG	+	chr7_3:73107490-73107509	Msa1122660:intron	40.0%
	AACGAACATGTGTAAGTCCT+AGG	-	chr7_3:73107717-73107736	None:intergenic	40.0%
	ATTATAAGTTTGCCATGCGC+CGG	-	chr7_3:73108230-73108249	None:intergenic	40.0%
	GTCTTCATGATGACCATGTA+CGG	+	chr7_3:73108317-73108336	Msa1122660:CDS	40.0%
	TCTTCATGATGACCATGTAC+GGG	+	chr7_3:73108318-73108337	Msa1122660:CDS	40.0%
!!	TTTTGCTTTTGACCCGTACA+TGG	-	chr7_3:73108333-73108352	None:intergenic	40.0%
	TGAAAAGGAGTTCAAACAGC+TGG	+	chr7_3:73108361-73108380	Msa1122660:CDS	40.0%
	GAAAAGGAGTTCAAACAGCT+GGG	+	chr7_3:73108362-73108381	Msa1122660:CDS	40.0%
!!!	GACACTCATTTTGAAACGGA+TGG	-	chr7_3:73108624-73108643	None:intergenic	40.0%
!	GTGTGCAGAGTATTAATTGG+AGG	-	chr7_3:73108730-73108749	None:intergenic	40.0%
	GAGAGTAACATTTGCTTGAG+TGG	+	chr7_3:73108888-73108907	Msa1122660:three_prime_UTR	40.0%
	AGTAACATTTGCTTGAGTGG+TGG	+	chr7_3:73108891-73108910	Msa1122660:three_prime_UTR	40.0%
	GTAACATTTGCTTGAGTGGT+GGG	+	chr7_3:73108892-73108911	Msa1122660:three_prime_UTR	40.0%
	TAACATTTGCTTGAGTGGTG+GGG	+	chr7_3:73108893-73108912	Msa1122660:three_prime_UTR	40.0%
!	GAAACTTTAGTGGATGTCAG+AGG	+	chr7_3:73107241-73107260	Msa1122660:CDS	40.0%
	ATGCACTTGCAACAATTTCG+GGG	-	chr7_3:73107339-73107358	None:intergenic	40.0%
	GATGCACTTGCAACAATTTC+GGG	-	chr7_3:73107340-73107359	None:intergenic	40.0%
	GGATGCACTTGCAACAATTT+CGG	-	chr7_3:73107341-73107360	None:intergenic	40.0%
	AACTAGTATACCTGGGAGTT+GGG	-	chr7_3:73107362-73107381	None:intergenic	40.0%
	AAACTAGTATACCTGGGAGT+TGG	-	chr7_3:73107363-73107382	None:intergenic	40.0%
	GTACGTGACTGTTAAGTACT+TGG	+	chr7_3:73107432-73107451	Msa1122660:intron	40.0%
!!!	CCTCATTTTGGTGTTTGCTT+TGG	-	chr7_3:73107493-73107512	None:intergenic	40.0%
	CCAAAGCAAACACCAAAATG+AGG	+	chr7_3:73107490-73107509	Msa1122660:intron	40.0%
	AACGAACATGTGTAAGTCCT+AGG	-	chr7_3:73107717-73107736	None:intergenic	40.0%
	ATTATAAGTTTGCCATGCGC+CGG	-	chr7_3:73108230-73108249	None:intergenic	40.0%
	GTCTTCATGATGACCATGTA+CGG	+	chr7_3:73108317-73108336	Msa1122660:CDS	40.0%
	TCTTCATGATGACCATGTAC+GGG	+	chr7_3:73108318-73108337	Msa1122660:CDS	40.0%
!!	TTTTGCTTTTGACCCGTACA+TGG	-	chr7_3:73108333-73108352	None:intergenic	40.0%
	TGAAAAGGAGTTCAAACAGC+TGG	+	chr7_3:73108361-73108380	Msa1122660:CDS	40.0%
	GAAAAGGAGTTCAAACAGCT+GGG	+	chr7_3:73108362-73108381	Msa1122660:CDS	40.0%
!!!	GACACTCATTTTGAAACGGA+TGG	-	chr7_3:73108624-73108643	None:intergenic	40.0%
!	GTGTGCAGAGTATTAATTGG+AGG	-	chr7_3:73108730-73108749	None:intergenic	40.0%
	GAGAGTAACATTTGCTTGAG+TGG	+	chr7_3:73108888-73108907	Msa1122660:three_prime_UTR	40.0%
	AGTAACATTTGCTTGAGTGG+TGG	+	chr7_3:73108891-73108910	Msa1122660:three_prime_UTR	40.0%
	GTAACATTTGCTTGAGTGGT+GGG	+	chr7_3:73108892-73108911	Msa1122660:three_prime_UTR	40.0%
	TAACATTTGCTTGAGTGGTG+GGG	+	chr7_3:73108893-73108912	Msa1122660:three_prime_UTR	40.0%
!	TTCGGAATGGTTCTGTGGAT+GGG	-	chr7_3:73107084-73107103	None:intergenic	45.0%
!	TTTCGGAATGGTTCTGTGGA+TGG	-	chr7_3:73107085-73107104	None:intergenic	45.0%
	ATCCACAGAACCATTCCGAA+AGG	+	chr7_3:73107084-73107103	Msa1122660:CDS	45.0%
	GAACCATTCCGAAAGGTGAA+CGG	+	chr7_3:73107091-73107110	Msa1122660:CDS	45.0%
	AACCATTCCGAAAGGTGAAC+GGG	+	chr7_3:73107092-73107111	Msa1122660:CDS	45.0%
!	GAATCATACGATGGGTTTCG+TGG	+	chr7_3:73107214-73107233	Msa1122660:CDS	45.0%
	TCGTGGTGTGGAAACTTTAG+TGG	+	chr7_3:73107231-73107250	Msa1122660:CDS	45.0%
	AGTGGATGTCAGAGGCAATA+CGG	+	chr7_3:73107249-73107268	Msa1122660:CDS	45.0%
	ACTTGGCATTTAAGCAGGGT+CGG	+	chr7_3:73107449-73107468	Msa1122660:intron	45.0%
	GGTCGGCACAATAAATTGTG+AGG	+	chr7_3:73107466-73107485	Msa1122660:intron	45.0%
!	CTAGGTTGAAGACACTGTGA+AGG	-	chr7_3:73107699-73107718	None:intergenic	45.0%
	CTTCACAGTGTCTTCAACCT+AGG	+	chr7_3:73107697-73107716	Msa1122660:intron	45.0%
	ATAGGCATAACCCATGTTGG+TGG	+	chr7_3:73107998-73108017	Msa1122660:intron	45.0%
	TTTATCAGGATAGCGTCTCC+AGG	-	chr7_3:73108046-73108065	None:intergenic	45.0%
	TGGAGACGCTATCCTGATAA+AGG	+	chr7_3:73108045-73108064	Msa1122660:CDS	45.0%
	CACTTGCAGTGGTTGTGTTT+GGG	+	chr7_3:73108149-73108168	Msa1122660:intron	45.0%
	GATTGTTGTAGCGAGTACGT+TGG	+	chr7_3:73108498-73108517	Msa1122660:three_prime_UTR	45.0%
!	TTCGGAATGGTTCTGTGGAT+GGG	-	chr7_3:73107084-73107103	None:intergenic	45.0%
!	TTTCGGAATGGTTCTGTGGA+TGG	-	chr7_3:73107085-73107104	None:intergenic	45.0%
	ATCCACAGAACCATTCCGAA+AGG	+	chr7_3:73107084-73107103	Msa1122660:CDS	45.0%
	GAACCATTCCGAAAGGTGAA+CGG	+	chr7_3:73107091-73107110	Msa1122660:CDS	45.0%
	AACCATTCCGAAAGGTGAAC+GGG	+	chr7_3:73107092-73107111	Msa1122660:CDS	45.0%
!	GAATCATACGATGGGTTTCG+TGG	+	chr7_3:73107214-73107233	Msa1122660:CDS	45.0%
	TCGTGGTGTGGAAACTTTAG+TGG	+	chr7_3:73107231-73107250	Msa1122660:CDS	45.0%
	AGTGGATGTCAGAGGCAATA+CGG	+	chr7_3:73107249-73107268	Msa1122660:CDS	45.0%
	ACTTGGCATTTAAGCAGGGT+CGG	+	chr7_3:73107449-73107468	Msa1122660:intron	45.0%
	GGTCGGCACAATAAATTGTG+AGG	+	chr7_3:73107466-73107485	Msa1122660:intron	45.0%
!	CTAGGTTGAAGACACTGTGA+AGG	-	chr7_3:73107699-73107718	None:intergenic	45.0%
	CTTCACAGTGTCTTCAACCT+AGG	+	chr7_3:73107697-73107716	Msa1122660:intron	45.0%
	ATAGGCATAACCCATGTTGG+TGG	+	chr7_3:73107998-73108017	Msa1122660:intron	45.0%
	TTTATCAGGATAGCGTCTCC+AGG	-	chr7_3:73108046-73108065	None:intergenic	45.0%
	TGGAGACGCTATCCTGATAA+AGG	+	chr7_3:73108045-73108064	Msa1122660:CDS	45.0%
	CACTTGCAGTGGTTGTGTTT+GGG	+	chr7_3:73108149-73108168	Msa1122660:intron	45.0%
	GATTGTTGTAGCGAGTACGT+TGG	+	chr7_3:73108498-73108517	Msa1122660:three_prime_UTR	45.0%
	TCAACCACGTCCTTAAGGAG+AGG	-	chr7_3:73107058-73107077	None:intergenic	50.0%
	TCTCCTTAAGGACGTGGTTG+AGG	+	chr7_3:73107057-73107076	Msa1122660:CDS	50.0%
!	CACCTTTCGGAATGGTTCTG+TGG	-	chr7_3:73107089-73107108	None:intergenic	50.0%
	ACCATTCCGAAAGGTGAACG+GGG	+	chr7_3:73107093-73107112	Msa1122660:CDS	50.0%
!	ATACGATGGGTTTCGTGGTG+TGG	+	chr7_3:73107219-73107238	Msa1122660:CDS	50.0%
	GTGGATGTCAGAGGCAATAC+GGG	+	chr7_3:73107250-73107269	Msa1122660:CDS	50.0%
	AGTGGCATCACCACCAACAT+GGG	-	chr7_3:73108011-73108030	None:intergenic	50.0%
	TCCAGGAGGAACAAACTCAG+TGG	-	chr7_3:73108029-73108048	None:intergenic	50.0%
	CCAAACACAACCACTGCAAG+TGG	-	chr7_3:73108151-73108170	None:intergenic	50.0%
	CCACTTGCAGTGGTTGTGTT+TGG	+	chr7_3:73108148-73108167	Msa1122660:intron	50.0%
	GAATTGCCATCGCACTCTTC+CGG	+	chr7_3:73108208-73108227	Msa1122660:CDS	50.0%
	ACCAGGTCAAAGGCTTTGCT+AGG	+	chr7_3:73108287-73108306	Msa1122660:CDS	50.0%
	ACCTAGCAAAGCCTTTGACC+TGG	-	chr7_3:73108291-73108310	None:intergenic	50.0%
	AGGTCAAAGGCTTTGCTAGG+TGG	+	chr7_3:73108290-73108309	Msa1122660:CDS	50.0%
	GGTCAAAGGCTTTGCTAGGT+GGG	+	chr7_3:73108291-73108310	Msa1122660:CDS	50.0%
	TCAACCACGTCCTTAAGGAG+AGG	-	chr7_3:73107058-73107077	None:intergenic	50.0%
	TCTCCTTAAGGACGTGGTTG+AGG	+	chr7_3:73107057-73107076	Msa1122660:CDS	50.0%
!	CACCTTTCGGAATGGTTCTG+TGG	-	chr7_3:73107089-73107108	None:intergenic	50.0%
	ACCATTCCGAAAGGTGAACG+GGG	+	chr7_3:73107093-73107112	Msa1122660:CDS	50.0%
!	ATACGATGGGTTTCGTGGTG+TGG	+	chr7_3:73107219-73107238	Msa1122660:CDS	50.0%
	GTGGATGTCAGAGGCAATAC+GGG	+	chr7_3:73107250-73107269	Msa1122660:CDS	50.0%
	AGTGGCATCACCACCAACAT+GGG	-	chr7_3:73108011-73108030	None:intergenic	50.0%
	TCCAGGAGGAACAAACTCAG+TGG	-	chr7_3:73108029-73108048	None:intergenic	50.0%
	CCAAACACAACCACTGCAAG+TGG	-	chr7_3:73108151-73108170	None:intergenic	50.0%
	CCACTTGCAGTGGTTGTGTT+TGG	+	chr7_3:73108148-73108167	Msa1122660:intron	50.0%
	GAATTGCCATCGCACTCTTC+CGG	+	chr7_3:73108208-73108227	Msa1122660:CDS	50.0%
	ACCAGGTCAAAGGCTTTGCT+AGG	+	chr7_3:73108287-73108306	Msa1122660:CDS	50.0%
	ACCTAGCAAAGCCTTTGACC+TGG	-	chr7_3:73108291-73108310	None:intergenic	50.0%
	AGGTCAAAGGCTTTGCTAGG+TGG	+	chr7_3:73108290-73108309	Msa1122660:CDS	50.0%
	GGTCAAAGGCTTTGCTAGGT+GGG	+	chr7_3:73108291-73108310	Msa1122660:CDS	50.0%
	AGCATGCGTATATGAGGGCC+TGG	+	chr7_3:73107032-73107051	Msa1122660:exon	55.0%
	GGTCCTCAACCACGTCCTTA+AGG	-	chr7_3:73107063-73107082	None:intergenic	55.0%
	TCCCCGTTCACCTTTCGGAA+TGG	-	chr7_3:73107097-73107116	None:intergenic	55.0%
	CTGGTTCCCCGTTCACCTTT+CGG	-	chr7_3:73107102-73107121	None:intergenic	55.0%
	GTAGGGTCGGCCCAAACATA+AGG	-	chr7_3:73107857-73107876	None:intergenic	55.0%
	CAGTGGCATCACCACCAACA+TGG	-	chr7_3:73108012-73108031	None:intergenic	55.0%
!	GCCACTGAGTTTGTTCCTCC+TGG	+	chr7_3:73108025-73108044	Msa1122660:CDS	55.0%
	ATCAGGATAGCGTCTCCAGG+AGG	-	chr7_3:73108043-73108062	None:intergenic	55.0%
	TTGTGATCCTGTGCTGCCAG+AGG	+	chr7_3:73108250-73108269	Msa1122660:CDS	55.0%
!!	GGACGAAAGCACCAGGTCAA+AGG	+	chr7_3:73108277-73108296	Msa1122660:CDS	55.0%
	GGAGTTCAAACAGCTGGGTG+TGG	+	chr7_3:73108367-73108386	Msa1122660:CDS	55.0%
	AGCATGCGTATATGAGGGCC+TGG	+	chr7_3:73107032-73107051	Msa1122660:exon	55.0%
	GGTCCTCAACCACGTCCTTA+AGG	-	chr7_3:73107063-73107082	None:intergenic	55.0%
	TCCCCGTTCACCTTTCGGAA+TGG	-	chr7_3:73107097-73107116	None:intergenic	55.0%
	CTGGTTCCCCGTTCACCTTT+CGG	-	chr7_3:73107102-73107121	None:intergenic	55.0%
	GTAGGGTCGGCCCAAACATA+AGG	-	chr7_3:73107857-73107876	None:intergenic	55.0%
	CAGTGGCATCACCACCAACA+TGG	-	chr7_3:73108012-73108031	None:intergenic	55.0%
!	GCCACTGAGTTTGTTCCTCC+TGG	+	chr7_3:73108025-73108044	Msa1122660:CDS	55.0%
	ATCAGGATAGCGTCTCCAGG+AGG	-	chr7_3:73108043-73108062	None:intergenic	55.0%
	TTGTGATCCTGTGCTGCCAG+AGG	+	chr7_3:73108250-73108269	Msa1122660:CDS	55.0%
!!	GGACGAAAGCACCAGGTCAA+AGG	+	chr7_3:73108277-73108296	Msa1122660:CDS	55.0%
	GGAGTTCAAACAGCTGGGTG+TGG	+	chr7_3:73108367-73108386	Msa1122660:CDS	55.0%
	CACGTCCTTAAGGAGAGGCC+AGG	-	chr7_3:73107053-73107072	None:intergenic	60.0%
	CTGGCCTCTCCTTAAGGACG+TGG	+	chr7_3:73107051-73107070	Msa1122660:CDS	60.0%
	GCAAGTGCATCCCAACTCCC+AGG	+	chr7_3:73107349-73107368	Msa1122660:CDS	60.0%
	TCCTGTGCTGCCAGAGGTGA+CGG	+	chr7_3:73108256-73108275	Msa1122660:CDS	60.0%
	GTGCTTTCGTCCGTCACCTC+TGG	-	chr7_3:73108269-73108288	None:intergenic	60.0%
!!	AGGTGACGGACGAAAGCACC+AGG	+	chr7_3:73108270-73108289	Msa1122660:CDS	60.0%
	AAACAGCTGGGTGTGGCTGC+TGG	+	chr7_3:73108374-73108393	Msa1122660:CDS	60.0%
	CACGTCCTTAAGGAGAGGCC+AGG	-	chr7_3:73107053-73107072	None:intergenic	60.0%
	CTGGCCTCTCCTTAAGGACG+TGG	+	chr7_3:73107051-73107070	Msa1122660:CDS	60.0%
	GCAAGTGCATCCCAACTCCC+AGG	+	chr7_3:73107349-73107368	Msa1122660:CDS	60.0%
	TCCTGTGCTGCCAGAGGTGA+CGG	+	chr7_3:73108256-73108275	Msa1122660:CDS	60.0%
	GTGCTTTCGTCCGTCACCTC+TGG	-	chr7_3:73108269-73108288	None:intergenic	60.0%
!!	AGGTGACGGACGAAAGCACC+AGG	+	chr7_3:73108270-73108289	Msa1122660:CDS	60.0%
	AAACAGCTGGGTGTGGCTGC+TGG	+	chr7_3:73108374-73108393	Msa1122660:CDS	60.0%
	GAGGGCCTGGCCTCTCCTTA+AGG	+	chr7_3:73107045-73107064	Msa1122660:CDS	65.0%
!	CATGCGCCGGAAGAGTGCGA+TGG	-	chr7_3:73108217-73108236	None:intergenic	65.0%
	CATCGCACTCTTCCGGCGCA+TGG	+	chr7_3:73108215-73108234	Msa1122660:CDS	65.0%
	TCCGTCACCTCTGGCAGCAC+AGG	-	chr7_3:73108260-73108279	None:intergenic	65.0%
	GAGGGCCTGGCCTCTCCTTA+AGG	+	chr7_3:73107045-73107064	Msa1122660:CDS	65.0%
!	CATGCGCCGGAAGAGTGCGA+TGG	-	chr7_3:73108217-73108236	None:intergenic	65.0%
	CATCGCACTCTTCCGGCGCA+TGG	+	chr7_3:73108215-73108234	Msa1122660:CDS	65.0%
	TCCGTCACCTCTGGCAGCAC+AGG	-	chr7_3:73108260-73108279	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	73107032	73108973	73107032	ID=Msa1122660;Name=Msa1122660
chr7_3	mRNA	73107032	73108973	73107032	ID=Msa1122660-mRNA-1;Parent=Msa1122660;Name=Msa1122660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=11\|1\|1\|1\|1\|1\|3\|513\|231
chr7_3	exon	73107032	73107370	73107032	ID=Msa1122660-mRNA-1:exon:19133;Parent=Msa1122660-mRNA-1
chr7_3	exon	73108002	73108066	73108002	ID=Msa1122660-mRNA-1:exon:19134;Parent=Msa1122660-mRNA-1
chr7_3	exon	73108158	73108973	73108158	ID=Msa1122660-mRNA-1:exon:19135;Parent=Msa1122660-mRNA-1
chr7_3	five_prime_UTR	73107032	73107042	73107032	ID=Msa1122660-mRNA-1:five_prime_utr;Parent=Msa1122660-mRNA-1
chr7_3	CDS	73107043	73107370	73107043	ID=Msa1122660-mRNA-1:cds;Parent=Msa1122660-mRNA-1
chr7_3	CDS	73108002	73108066	73108002	ID=Msa1122660-mRNA-1:cds;Parent=Msa1122660-mRNA-1
chr7_3	CDS	73108158	73108460	73108158	ID=Msa1122660-mRNA-1:cds;Parent=Msa1122660-mRNA-1
chr7_3	three_prime_UTR	73108461	73108973	73108461	ID=Msa1122660-mRNA-1:three_prime_utr;Parent=Msa1122660-mRNA-1

Gene Sequence

>Msa1122660

ATGAGGGCCTGGCCTCTCCTTAAGGACGTGGTTGAGGACCCATCCACAGAACCATTCCGAAAGGTGAACGGGGAACCAGCACATGACTTTTACGTAAAATATCGAGAACAAATGAAGTTGTTTAACAAAGCTTTTATTGGAATGACCATTCCATTTTTTAGAGAAGTTTTGGAATCATACGATGGGTTTCGTGGTGTGGAAACTTTAGTGGATGTCAGAGGCAATACGGGCATTTCTTTGCAGATTATAATGGCTAAATTCCCAAACATTAGCAAGGGAATCAACTTTGATCTCCCCGAAATTGTTGCAAGTGCATCCCAACTCCCAGGCATAACCCATGTTGGTGGTGATGCCACTGAGTTTGTTCCTCCTGGAGACGCTATCCTGATAAAGTGGTTGTGTTTGGGTCTGTCAGATGAACAATGTAGTACAAGTATGATGAGGAATTGCCATCGCACTCTTCCGGCGCATGGCAAACTTATAATTTGTGATCCTGTGCTGCCAGAGGTGACGGACGAAAGCACCAGGTCAAAGGCTTTGCTAGGTGGGAATGTCTTCATGATGACCATGTACGGGTCAAAAGCAAAACATAGAACTGAAAAGGAGTTCAAACAGCTGGGTGTGGCTGCTGGTTTTTCGAAGTTAAGTGCTTTCTATGTTGATGCATACATGACATTTTTGGAGTATCACAAGTAG

Protein sequence

>Msa1122660

MRAWPLLKDVVEDPSTEPFRKVNGEPAHDFYVKYREQMKLFNKAFIGMTIPFFREVLESYDGFRGVETLVDVRGNTGISLQIIMAKFPNISKGINFDLPEIVASASQLPGITHVGGDATEFVPPGDAILIKWLCLGLSDEQCSTSMMRNCHRTLPAHGKLIICDPVLPEVTDESTRSKALLGGNVFMMTMYGSKAKHRTEKEFKQLGVAAGFSKLSAFYVDAYMTFLEYHK*