AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1037990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037990 MtrunA17_Chr7g0275091 94.083 169 5 2 2 168 3 168 1.09e-115 324
Msa1037990 MtrunA17_Chr8g0338561 33.951 162 82 5 6 165 8 146 2.55e-19 79.3
Msa1037990 MtrunA17_Chr7g0234391 29.885 174 85 9 4 168 6 151 1.09e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037990 AT5G18310.2 36.747 166 91 4 5 165 11 167 2.69e-21 85.5
Msa1037990 AT5G48500.1 33.728 169 90 6 3 163 9 163 2.24e-17 75.5
Msa1037990 AT5G18310.3 32.886 149 86 4 22 165 1 140 4.52e-11 58.2

Find 73 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAACTTACATCCATATT+TGG 0.155608 7_1:+74759028 None:intergenic
GTTTCAAAGTATTGAGTTAT+TGG 0.194110 7_1:+74758857 None:intergenic
TCTCATTCACCATAACATTT+TGG 0.210593 7_1:+74758255 None:intergenic
TTCTTGTTCATTTGCTTCCT+TGG 0.212136 7_1:+74758173 None:intergenic
AAATAGGTGGTGTGGGTTAA+AGG 0.216772 7_1:+74759278 None:intergenic
TTGCATTCTTAAATTTAATT+TGG 0.223613 7_1:-74757696 Msa1037990:three_prime_UTR
TATCCTTGTCTAAGGTTTCT+TGG 0.252675 7_1:-74759194 Msa1037990:five_prime_UTR
TTTCACTTTACCACTTATAA+AGG 0.266645 7_1:+74759724 None:intergenic
TGTTCCACCAATTGTCTCTA+TGG 0.270167 7_1:-74759480 Msa1037990:five_prime_UTR
AGATCTTCATCAACAGGTTT+TGG 0.271957 7_1:+74758113 None:intergenic
TTGATTTAAGAATCCAAATA+TGG 0.274014 7_1:-74759041 Msa1037990:exon
ATTTAATTTGGCGTTCAATT+TGG 0.282147 7_1:-74757684 Msa1037990:three_prime_UTR
GGAATTAATATCCTTGTCTA+AGG 0.291001 7_1:-74759202 Msa1037990:five_prime_UTR
GTATGACCTATATCTGAAAA+AGG 0.310995 7_1:+74759651 None:intergenic
AAATACCAGCATTTGGAAAC+TGG 0.315626 7_1:-74758898 Msa1037990:CDS
ATGTGTAGGCAACAAGGAAT+AGG 0.352813 7_1:-74758289 Msa1037990:intron
ATCCTTGTCTAAGGTTTCTT+GGG 0.356743 7_1:-74759193 Msa1037990:five_prime_UTR
TAACTAGTAAGATAAGAAAT+TGG 0.357173 7_1:+74759510 None:intergenic
TTTATCTATAAATTCTGCTC+AGG 0.367775 7_1:-74759224 Msa1037990:five_prime_UTR
TTATAGAGATCTTCATCAAC+AGG 0.392468 7_1:+74758107 None:intergenic
GGGTTTCATTTCCAAGTGTC+TGG 0.396397 7_1:-74757934 Msa1037990:CDS
AGTGGTCAAATACCAGCATT+TGG 0.401490 7_1:-74758905 Msa1037990:CDS
GGAAGTCTCGTTGGTTGTAA+TGG 0.406598 7_1:+74758134 None:intergenic
TTTACCACTTATAAAGGAAA+TGG 0.407130 7_1:+74759730 None:intergenic
ATTCGTTACAGTTCTTCATC+TGG 0.411701 7_1:-74758815 Msa1037990:CDS
AAGGAAGTACCAAAATGTTA+TGG 0.457410 7_1:-74758264 Msa1037990:CDS
TAAAATTCCATAGAGACAAT+TGG 0.458838 7_1:+74759473 None:intergenic
ATTCCTATTACCTTTCGAAC+TGG 0.463662 7_1:+74758716 None:intergenic
AGCTACTTCGCACAACTAAG+AGG 0.477902 7_1:-74758073 Msa1037990:CDS
TTAGTTGTGCGAAGTAGCTC+AGG 0.482904 7_1:+74758077 None:intergenic
AAATCCCAGTTTCCAAATGC+TGG 0.494534 7_1:+74758893 None:intergenic
TTTGAAACTGCAAGACAAGC+TGG 0.494930 7_1:-74758842 Msa1037990:CDS
AACGCTAACGCATGTTGTGC+TGG 0.495224 7_1:-74757810 Msa1037990:three_prime_UTR
AGCAGCAGGCACCAGACACT+TGG 0.496535 7_1:+74757923 None:intergenic
AGGGAAAGTGTACGACGTAA+TGG 0.509693 7_1:-74758201 Msa1037990:CDS
TGTGTAGGCAACAAGGAATA+GGG 0.512863 7_1:-74758288 Msa1037990:intron
CTGCTGCTTGTGTTTCATGA+GGG 0.515777 7_1:-74757908 Msa1037990:exon
AGCAGAGTAAATAGGTGGTG+TGG 0.517706 7_1:+74759270 None:intergenic
GGGGCCATTTCCTTTATAAG+TGG 0.525842 7_1:-74759734 Msa1037990:five_prime_UTR
AATTTGGCGTTCAATTTGGT+CGG 0.529177 7_1:-74757680 Msa1037990:three_prime_UTR
CCTGCTGCTTGTGTTTCATG+AGG 0.531196 7_1:-74757909 Msa1037990:exon
AGCATAGCATAGTGAAGTGT+GGG 0.535923 7_1:+74759598 None:intergenic
AATACCAGCATTTGGAAACT+GGG 0.537114 7_1:-74758897 Msa1037990:CDS
AATTGGTAAGGTAGTTGAGT+GGG 0.540202 7_1:+74759527 None:intergenic
TTATAAGTGGTAAAGTGAAA+CGG 0.556213 7_1:-74759721 Msa1037990:five_prime_UTR
AGTAAGATAAGAAATTGGTA+AGG 0.556251 7_1:+74759515 None:intergenic
TTATCTATAAATTCTGCTCA+GGG 0.556336 7_1:-74759223 Msa1037990:five_prime_UTR
GCAGAGTAAATAGGTGGTGT+GGG 0.556723 7_1:+74759271 None:intergenic
GTCTTAACATAACACATGCC+TGG 0.569162 7_1:-74759424 Msa1037990:five_prime_UTR
GTGAAGTGTGGGTGACAAGT+TGG 0.576469 7_1:+74759609 None:intergenic
CCTCATGAAACACAAGCAGC+AGG 0.582533 7_1:+74757909 None:intergenic
TATGAAGACAGAGAAAAGAA+AGG 0.595355 7_1:+74759309 None:intergenic
TAATAAGAAACCAGTTCGAA+AGG 0.596559 7_1:-74758726 Msa1037990:intron
GTTTCTATAATCAATCACTA+AGG 0.600084 7_1:-74757870 Msa1037990:three_prime_UTR
GCTGCACGAACATGAACGTA+AGG 0.605636 7_1:+74758782 None:intergenic
TAGCATAGCATAGTGAAGTG+TGG 0.606373 7_1:+74759597 None:intergenic
AATTCCATAGAGACAATTGG+TGG 0.608381 7_1:+74759476 None:intergenic
AAGGAAGCAAATGAACAAGA+AGG 0.611603 7_1:-74758171 Msa1037990:CDS
TAATAGGAATGGAAGAGAAG+TGG 0.615162 7_1:-74758923 Msa1037990:intron
TGAACATGAGAAAGCAGCAA+GGG 0.619686 7_1:-74758220 Msa1037990:CDS
GTTGTGCGAAGTAGCTCAGG+AGG 0.623117 7_1:+74758080 None:intergenic
GCTACTTCGCACAACTAAGA+GGG 0.636297 7_1:-74758072 Msa1037990:intron
AAATTGGTAAGGTAGTTGAG+TGG 0.645836 7_1:+74759526 None:intergenic
AGGCAACAAGGAATAGGGAA+AGG 0.648026 7_1:-74758283 Msa1037990:CDS
ATGAACATGAGAAAGCAGCA+AGG 0.652015 7_1:-74758221 Msa1037990:CDS
TTCCACACAGAGATTCATGA+GGG 0.652324 7_1:-74759754 Msa1037990:five_prime_UTR
TTCCCAAGAAACCTTAGACA+AGG 0.655191 7_1:+74759191 None:intergenic
ACGACGTAATGGAACATCCA+AGG 0.662179 7_1:-74758190 Msa1037990:CDS
GTTGTTATGTGTAGGCAACA+AGG 0.682654 7_1:-74758295 Msa1037990:intron
ATTCCACACAGAGATTCATG+AGG 0.687240 7_1:-74759755 Msa1037990:five_prime_UTR
TTGTGCGAAGTAGCTCAGGA+GGG 0.688459 7_1:+74758081 None:intergenic
GCCCCTCATGAATCTCTGTG+TGG 0.705399 7_1:+74759752 None:intergenic
TCCACACAGAGATTCATGAG+GGG 0.729718 7_1:-74759753 Msa1037990:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTAAGAACAAAAA+CGG + chr7_1:74758143-74758162 None:intergenic 10.0%
!! ATTATTATTAAGAACAAAAA+CGG + chr7_1:74758143-74758162 None:intergenic 10.0%
!! TTATTATTAAGAACAAAAAC+GGG + chr7_1:74758142-74758161 None:intergenic 15.0%
!! AAAAAAGAAATAAAAAAGAC+AGG + chr7_1:74758383-74758402 None:intergenic 15.0%
!!! AGTAGTACAAAAATAATTTT+TGG - chr7_1:74759187-74759206 Msa1037990:five_prime_UTR 15.0%
!! TTGCATTCTTAAATTTAATT+TGG - chr7_1:74759843-74759862 Msa1037990:five_prime_UTR 15.0%
!! TTATTATTAAGAACAAAAAC+GGG + chr7_1:74758142-74758161 None:intergenic 15.0%
!! AAAAAAGAAATAAAAAAGAC+AGG + chr7_1:74758383-74758402 None:intergenic 15.0%
!!! AGTAGTACAAAAATAATTTT+TGG - chr7_1:74759187-74759206 Msa1037990:five_prime_UTR 15.0%
!! TTGCATTCTTAAATTTAATT+TGG - chr7_1:74759843-74759862 Msa1037990:five_prime_UTR 15.0%
!!! AGTTACAAAACTTTTTCAAT+GGG + chr7_1:74757752-74757771 None:intergenic 20.0%
!!! AAGTTACAAAACTTTTTCAA+TGG + chr7_1:74757753-74757772 None:intergenic 20.0%
!! TAACTAGTAAGATAAGAAAT+TGG + chr7_1:74758032-74758051 None:intergenic 20.0%
!! TTGATTTAAGAATCCAAATA+TGG - chr7_1:74758498-74758517 Msa1037990:intron 20.0%
!! AATAAACTTACATCCATATT+TGG + chr7_1:74758514-74758533 None:intergenic 20.0%
!!! TAATGTTTGTTGTTGTTAAT+AGG - chr7_1:74758600-74758619 Msa1037990:intron 20.0%
!! AAGAACAAGAAAAAACAAAA+AGG + chr7_1:74758851-74758870 None:intergenic 20.0%
!! AAAGTTGTAAGGTTAAAATT+TGG + chr7_1:74758890-74758909 None:intergenic 20.0%
!!! CTATTTTTTTATTTCCTAGT+GGG - chr7_1:74759159-74759178 Msa1037990:five_prime_UTR 20.0%
!!! GTACAAAAATAATTTTTGGT+TGG - chr7_1:74759191-74759210 Msa1037990:five_prime_UTR 20.0%
!! ATTAACAACATTTCAAATCA+CGG + chr7_1:74759546-74759565 None:intergenic 20.0%
!!! ACTAAGGAAGTTTAATTTTT+TGG - chr7_1:74759685-74759704 Msa1037990:five_prime_UTR 20.0%
!!! AGTTACAAAACTTTTTCAAT+GGG + chr7_1:74757752-74757771 None:intergenic 20.0%
!!! AAGTTACAAAACTTTTTCAA+TGG + chr7_1:74757753-74757772 None:intergenic 20.0%
!! TAACTAGTAAGATAAGAAAT+TGG + chr7_1:74758032-74758051 None:intergenic 20.0%
!! TTGATTTAAGAATCCAAATA+TGG - chr7_1:74758498-74758517 Msa1037990:intron 20.0%
!! AATAAACTTACATCCATATT+TGG + chr7_1:74758514-74758533 None:intergenic 20.0%
!!! TAATGTTTGTTGTTGTTAAT+AGG - chr7_1:74758600-74758619 Msa1037990:intron 20.0%
!! AAGAACAAGAAAAAACAAAA+AGG + chr7_1:74758851-74758870 None:intergenic 20.0%
!! AAAGTTGTAAGGTTAAAATT+TGG + chr7_1:74758890-74758909 None:intergenic 20.0%
!!! CTATTTTTTTATTTCCTAGT+GGG - chr7_1:74759159-74759178 Msa1037990:five_prime_UTR 20.0%
!!! GTACAAAAATAATTTTTGGT+TGG - chr7_1:74759191-74759210 Msa1037990:five_prime_UTR 20.0%
!! ATTAACAACATTTCAAATCA+CGG + chr7_1:74759546-74759565 None:intergenic 20.0%
!!! ACTAAGGAAGTTTAATTTTT+TGG - chr7_1:74759685-74759704 Msa1037990:five_prime_UTR 20.0%
!!! AAAACTTTTTCAATGGGAAA+GGG + chr7_1:74757746-74757765 None:intergenic 25.0%
! TTTACCACTTATAAAGGAAA+TGG + chr7_1:74757812-74757831 None:intergenic 25.0%
! TTTCACTTTACCACTTATAA+AGG + chr7_1:74757818-74757837 None:intergenic 25.0%
! TTATAAGTGGTAAAGTGAAA+CGG - chr7_1:74757818-74757837 Msa1037990:three_prime_UTR 25.0%
! AGTAAGATAAGAAATTGGTA+AGG + chr7_1:74758027-74758046 None:intergenic 25.0%
! TAAAATTCCATAGAGACAAT+TGG + chr7_1:74758069-74758088 None:intergenic 25.0%
!!! GGAATTTTAGTAGTAGTAAA+AGG - chr7_1:74758080-74758099 Msa1037990:CDS 25.0%
! TGAAAAAAAGCAGAGTAAAT+AGG + chr7_1:74758280-74758299 None:intergenic 25.0%
! TTTATCTATAAATTCTGCTC+AGG - chr7_1:74758315-74758334 Msa1037990:intron 25.0%
! TTATCTATAAATTCTGCTCA+GGG - chr7_1:74758316-74758335 Msa1037990:intron 25.0%
! TTGTTGTGTCTTACAAAAAT+GGG + chr7_1:74758430-74758449 None:intergenic 25.0%
!! TTTGTTGTGTCTTACAAAAA+TGG + chr7_1:74758431-74758450 None:intergenic 25.0%
! AACAAAAACACTAGAAGAAA+CGG - chr7_1:74758445-74758464 Msa1037990:intron 25.0%
!!! TTTGTTGTTGTTAATAGGAA+TGG - chr7_1:74758605-74758624 Msa1037990:intron 25.0%
!!! GTTTCAAAGTATTGAGTTAT+TGG + chr7_1:74758685-74758704 None:intergenic 25.0%
! CAATGATTATGAAAGTTGTA+AGG + chr7_1:74758901-74758920 None:intergenic 25.0%
!! TGAGTTAGATTTTTCATTTG+AGG + chr7_1:74758933-74758952 None:intergenic 25.0%
!!! ACTATTTACTCTGAAATTTG+TGG - chr7_1:74759032-74759051 Msa1037990:intron 25.0%
! CATCACATTATTAACCATAT+GGG + chr7_1:74759101-74759120 None:intergenic 25.0%
! AATAATGTGATGGTTAAGAA+AGG - chr7_1:74759109-74759128 Msa1037990:five_prime_UTR 25.0%
! CCACTAGGAAATAAAAAAAT+AGG + chr7_1:74759161-74759180 None:intergenic 25.0%
!!! CCTATTTTTTTATTTCCTAG+TGG - chr7_1:74759158-74759177 Msa1037990:five_prime_UTR 25.0%
! TATATGATGTTGTTATGTGT+AGG - chr7_1:74759236-74759255 Msa1037990:five_prime_UTR 25.0%
! TTTGTGCAGAAAAAAATGTT+GGG - chr7_1:74759585-74759604 Msa1037990:five_prime_UTR 25.0%
! GTTTCTATAATCAATCACTA+AGG - chr7_1:74759669-74759688 Msa1037990:five_prime_UTR 25.0%
!!! ATTTAATTTGGCGTTCAATT+TGG - chr7_1:74759855-74759874 Msa1037990:five_prime_UTR 25.0%
!!! AAAACTTTTTCAATGGGAAA+GGG + chr7_1:74757746-74757765 None:intergenic 25.0%
! TTTACCACTTATAAAGGAAA+TGG + chr7_1:74757812-74757831 None:intergenic 25.0%
! TTTCACTTTACCACTTATAA+AGG + chr7_1:74757818-74757837 None:intergenic 25.0%
! TTATAAGTGGTAAAGTGAAA+CGG - chr7_1:74757818-74757837 Msa1037990:three_prime_UTR 25.0%
! AGTAAGATAAGAAATTGGTA+AGG + chr7_1:74758027-74758046 None:intergenic 25.0%
! TAAAATTCCATAGAGACAAT+TGG + chr7_1:74758069-74758088 None:intergenic 25.0%
!!! GGAATTTTAGTAGTAGTAAA+AGG - chr7_1:74758080-74758099 Msa1037990:CDS 25.0%
! TGAAAAAAAGCAGAGTAAAT+AGG + chr7_1:74758280-74758299 None:intergenic 25.0%
! TTTATCTATAAATTCTGCTC+AGG - chr7_1:74758315-74758334 Msa1037990:intron 25.0%
! TTATCTATAAATTCTGCTCA+GGG - chr7_1:74758316-74758335 Msa1037990:intron 25.0%
! TTGTTGTGTCTTACAAAAAT+GGG + chr7_1:74758430-74758449 None:intergenic 25.0%
!! TTTGTTGTGTCTTACAAAAA+TGG + chr7_1:74758431-74758450 None:intergenic 25.0%
! AACAAAAACACTAGAAGAAA+CGG - chr7_1:74758445-74758464 Msa1037990:intron 25.0%
!!! TTTGTTGTTGTTAATAGGAA+TGG - chr7_1:74758605-74758624 Msa1037990:intron 25.0%
!!! GTTTCAAAGTATTGAGTTAT+TGG + chr7_1:74758685-74758704 None:intergenic 25.0%
! CAATGATTATGAAAGTTGTA+AGG + chr7_1:74758901-74758920 None:intergenic 25.0%
!! TGAGTTAGATTTTTCATTTG+AGG + chr7_1:74758933-74758952 None:intergenic 25.0%
!!! ACTATTTACTCTGAAATTTG+TGG - chr7_1:74759032-74759051 Msa1037990:intron 25.0%
! CATCACATTATTAACCATAT+GGG + chr7_1:74759101-74759120 None:intergenic 25.0%
! AATAATGTGATGGTTAAGAA+AGG - chr7_1:74759109-74759128 Msa1037990:five_prime_UTR 25.0%
! CCACTAGGAAATAAAAAAAT+AGG + chr7_1:74759161-74759180 None:intergenic 25.0%
!!! CCTATTTTTTTATTTCCTAG+TGG - chr7_1:74759158-74759177 Msa1037990:five_prime_UTR 25.0%
! TATATGATGTTGTTATGTGT+AGG - chr7_1:74759236-74759255 Msa1037990:five_prime_UTR 25.0%
! TTTGTGCAGAAAAAAATGTT+GGG - chr7_1:74759585-74759604 Msa1037990:five_prime_UTR 25.0%
! GTTTCTATAATCAATCACTA+AGG - chr7_1:74759669-74759688 Msa1037990:five_prime_UTR 25.0%
!!! ATTTAATTTGGCGTTCAATT+TGG - chr7_1:74759855-74759874 Msa1037990:five_prime_UTR 25.0%
!!! CAAAACTTTTTCAATGGGAA+AGG + chr7_1:74757747-74757766 None:intergenic 30.0%
!!! TCTAAGCCTTTTTCAGATAT+AGG - chr7_1:74757882-74757901 Msa1037990:three_prime_UTR 30.0%
GTATGACCTATATCTGAAAA+AGG + chr7_1:74757891-74757910 None:intergenic 30.0%
TATGAAGACAGAGAAAAGAA+AGG + chr7_1:74758233-74758252 None:intergenic 30.0%
AAAAAAGCAGAGTAAATAGG+TGG + chr7_1:74758277-74758296 None:intergenic 30.0%
GGAATTAATATCCTTGTCTA+AGG - chr7_1:74758337-74758356 Msa1037990:intron 30.0%
ATAAAAAAGACAGGAAGATG+TGG + chr7_1:74758374-74758393 None:intergenic 30.0%
TAATAAGAAACCAGTTCGAA+AGG - chr7_1:74758813-74758832 Msa1037990:CDS 30.0%
CCATCACATTATTAACCATA+TGG + chr7_1:74759102-74759121 None:intergenic 30.0%
CCATATGGTTAATAATGTGA+TGG - chr7_1:74759099-74759118 Msa1037990:five_prime_UTR 30.0%
!! AAGGAAGTACCAAAATGTTA+TGG - chr7_1:74759275-74759294 Msa1037990:five_prime_UTR 30.0%
! TCTCATTCACCATAACATTT+TGG + chr7_1:74759287-74759306 None:intergenic 30.0%
TTATAGAGATCTTCATCAAC+AGG + chr7_1:74759435-74759454 None:intergenic 30.0%
GTTTGTGCAGAAAAAAATGT+TGG - chr7_1:74759584-74759603 Msa1037990:five_prime_UTR 30.0%
!!! CAAAACTTTTTCAATGGGAA+AGG + chr7_1:74757747-74757766 None:intergenic 30.0%
!!! TCTAAGCCTTTTTCAGATAT+AGG - chr7_1:74757882-74757901 Msa1037990:three_prime_UTR 30.0%
GTATGACCTATATCTGAAAA+AGG + chr7_1:74757891-74757910 None:intergenic 30.0%
TATGAAGACAGAGAAAAGAA+AGG + chr7_1:74758233-74758252 None:intergenic 30.0%
AAAAAAGCAGAGTAAATAGG+TGG + chr7_1:74758277-74758296 None:intergenic 30.0%
GGAATTAATATCCTTGTCTA+AGG - chr7_1:74758337-74758356 Msa1037990:intron 30.0%
ATAAAAAAGACAGGAAGATG+TGG + chr7_1:74758374-74758393 None:intergenic 30.0%
TAATAAGAAACCAGTTCGAA+AGG - chr7_1:74758813-74758832 Msa1037990:CDS 30.0%
CCATCACATTATTAACCATA+TGG + chr7_1:74759102-74759121 None:intergenic 30.0%
CCATATGGTTAATAATGTGA+TGG - chr7_1:74759099-74759118 Msa1037990:five_prime_UTR 30.0%
!! AAGGAAGTACCAAAATGTTA+TGG - chr7_1:74759275-74759294 Msa1037990:five_prime_UTR 30.0%
! TCTCATTCACCATAACATTT+TGG + chr7_1:74759287-74759306 None:intergenic 30.0%
TTATAGAGATCTTCATCAAC+AGG + chr7_1:74759435-74759454 None:intergenic 30.0%
GTTTGTGCAGAAAAAAATGT+TGG - chr7_1:74759584-74759603 Msa1037990:five_prime_UTR 30.0%
!!! TCATGTTTTTTCGAGCATAC+TGG + chr7_1:74757692-74757711 None:intergenic 35.0%
AATTGGTAAGGTAGTTGAGT+GGG + chr7_1:74758015-74758034 None:intergenic 35.0%
AAATTGGTAAGGTAGTTGAG+TGG + chr7_1:74758016-74758035 None:intergenic 35.0%
AATTCCATAGAGACAATTGG+TGG + chr7_1:74758066-74758085 None:intergenic 35.0%
AGAGAAAAACAGAATCAGGA+GGG + chr7_1:74758175-74758194 None:intergenic 35.0%
AAGAGAAAAACAGAATCAGG+AGG + chr7_1:74758176-74758195 None:intergenic 35.0%
CAGAAGAGAAAAACAGAATC+AGG + chr7_1:74758179-74758198 None:intergenic 35.0%
! TATCCTTGTCTAAGGTTTCT+TGG - chr7_1:74758345-74758364 Msa1037990:intron 35.0%
! ATCCTTGTCTAAGGTTTCTT+GGG - chr7_1:74758346-74758365 Msa1037990:intron 35.0%
! TGGGGTTGAGAACTTTTTAA+AGG + chr7_1:74758407-74758426 None:intergenic 35.0%
TGTGTCTTACAAAAATGGGT+GGG + chr7_1:74758426-74758445 None:intergenic 35.0%
TTGTGTCTTACAAAAATGGG+TGG + chr7_1:74758427-74758446 None:intergenic 35.0%
TAATAGGAATGGAAGAGAAG+TGG - chr7_1:74758616-74758635 Msa1037990:intron 35.0%
AAATACCAGCATTTGGAAAC+TGG - chr7_1:74758641-74758660 Msa1037990:intron 35.0%
AATACCAGCATTTGGAAACT+GGG - chr7_1:74758642-74758661 Msa1037990:intron 35.0%
ATTCGTTACAGTTCTTCATC+TGG - chr7_1:74758724-74758743 Msa1037990:intron 35.0%
AAACCAGTTCGAAAGGTAAT+AGG - chr7_1:74758820-74758839 Msa1037990:CDS 35.0%
ATTCCTATTACCTTTCGAAC+TGG + chr7_1:74758826-74758845 None:intergenic 35.0%
TTCTTGTTCATTTGCTTCCT+TGG + chr7_1:74759369-74759388 None:intergenic 35.0%
AAGGAAGCAAATGAACAAGA+AGG - chr7_1:74759368-74759387 Msa1037990:five_prime_UTR 35.0%
! AGATCTTCATCAACAGGTTT+TGG + chr7_1:74759429-74759448 None:intergenic 35.0%
AATTTGGCGTTCAATTTGGT+CGG - chr7_1:74759859-74759878 Msa1037990:five_prime_UTR 35.0%
!!! TCATGTTTTTTCGAGCATAC+TGG + chr7_1:74757692-74757711 None:intergenic 35.0%
AATTGGTAAGGTAGTTGAGT+GGG + chr7_1:74758015-74758034 None:intergenic 35.0%
AAATTGGTAAGGTAGTTGAG+TGG + chr7_1:74758016-74758035 None:intergenic 35.0%
AATTCCATAGAGACAATTGG+TGG + chr7_1:74758066-74758085 None:intergenic 35.0%
AGAGAAAAACAGAATCAGGA+GGG + chr7_1:74758175-74758194 None:intergenic 35.0%
AAGAGAAAAACAGAATCAGG+AGG + chr7_1:74758176-74758195 None:intergenic 35.0%
CAGAAGAGAAAAACAGAATC+AGG + chr7_1:74758179-74758198 None:intergenic 35.0%
! TATCCTTGTCTAAGGTTTCT+TGG - chr7_1:74758345-74758364 Msa1037990:intron 35.0%
! ATCCTTGTCTAAGGTTTCTT+GGG - chr7_1:74758346-74758365 Msa1037990:intron 35.0%
! TGGGGTTGAGAACTTTTTAA+AGG + chr7_1:74758407-74758426 None:intergenic 35.0%
TGTGTCTTACAAAAATGGGT+GGG + chr7_1:74758426-74758445 None:intergenic 35.0%
TTGTGTCTTACAAAAATGGG+TGG + chr7_1:74758427-74758446 None:intergenic 35.0%
TAATAGGAATGGAAGAGAAG+TGG - chr7_1:74758616-74758635 Msa1037990:intron 35.0%
AAATACCAGCATTTGGAAAC+TGG - chr7_1:74758641-74758660 Msa1037990:intron 35.0%
AATACCAGCATTTGGAAACT+GGG - chr7_1:74758642-74758661 Msa1037990:intron 35.0%
ATTCGTTACAGTTCTTCATC+TGG - chr7_1:74758724-74758743 Msa1037990:intron 35.0%
AAACCAGTTCGAAAGGTAAT+AGG - chr7_1:74758820-74758839 Msa1037990:CDS 35.0%
ATTCCTATTACCTTTCGAAC+TGG + chr7_1:74758826-74758845 None:intergenic 35.0%
TTCTTGTTCATTTGCTTCCT+TGG + chr7_1:74759369-74759388 None:intergenic 35.0%
AAGGAAGCAAATGAACAAGA+AGG - chr7_1:74759368-74759387 Msa1037990:five_prime_UTR 35.0%
! AGATCTTCATCAACAGGTTT+TGG + chr7_1:74759429-74759448 None:intergenic 35.0%
AATTTGGCGTTCAATTTGGT+CGG - chr7_1:74759859-74759878 Msa1037990:five_prime_UTR 35.0%
ATTCCACACAGAGATTCATG+AGG - chr7_1:74757784-74757803 Msa1037990:three_prime_UTR 40.0%
TTCCACACAGAGATTCATGA+GGG - chr7_1:74757785-74757804 Msa1037990:three_prime_UTR 40.0%
AGCATAGCATAGTGAAGTGT+GGG + chr7_1:74757944-74757963 None:intergenic 40.0%
TAGCATAGCATAGTGAAGTG+TGG + chr7_1:74757945-74757964 None:intergenic 40.0%
TGTTCCACCAATTGTCTCTA+TGG - chr7_1:74758059-74758078 Msa1037990:intron 40.0%
GTCTTAACATAACACATGCC+TGG - chr7_1:74758115-74758134 Msa1037990:CDS 40.0%
TTAAGAACAAAAACGGGACC+AGG + chr7_1:74758136-74758155 None:intergenic 40.0%
! AAATAGGTGGTGTGGGTTAA+AGG + chr7_1:74758264-74758283 None:intergenic 40.0%
TTCCCAAGAAACCTTAGACA+AGG + chr7_1:74758351-74758370 None:intergenic 40.0%
GTGTCTTACAAAAATGGGTG+GGG + chr7_1:74758425-74758444 None:intergenic 40.0%
AGTGGTCAAATACCAGCATT+TGG - chr7_1:74758634-74758653 Msa1037990:intron 40.0%
AAATCCCAGTTTCCAAATGC+TGG + chr7_1:74758649-74758668 None:intergenic 40.0%
! TTTGAAACTGCAAGACAAGC+TGG - chr7_1:74758697-74758716 Msa1037990:intron 40.0%
GTTGTTATGTGTAGGCAACA+AGG - chr7_1:74759244-74759263 Msa1037990:five_prime_UTR 40.0%
ATGTGTAGGCAACAAGGAAT+AGG - chr7_1:74759250-74759269 Msa1037990:five_prime_UTR 40.0%
TGTGTAGGCAACAAGGAATA+GGG - chr7_1:74759251-74759270 Msa1037990:five_prime_UTR 40.0%
ATGAACATGAGAAAGCAGCA+AGG - chr7_1:74759318-74759337 Msa1037990:five_prime_UTR 40.0%
TGAACATGAGAAAGCAGCAA+GGG - chr7_1:74759319-74759338 Msa1037990:five_prime_UTR 40.0%
ATTCCACACAGAGATTCATG+AGG - chr7_1:74757784-74757803 Msa1037990:three_prime_UTR 40.0%
TTCCACACAGAGATTCATGA+GGG - chr7_1:74757785-74757804 Msa1037990:three_prime_UTR 40.0%
AGCATAGCATAGTGAAGTGT+GGG + chr7_1:74757944-74757963 None:intergenic 40.0%
TAGCATAGCATAGTGAAGTG+TGG + chr7_1:74757945-74757964 None:intergenic 40.0%
TGTTCCACCAATTGTCTCTA+TGG - chr7_1:74758059-74758078 Msa1037990:intron 40.0%
GTCTTAACATAACACATGCC+TGG - chr7_1:74758115-74758134 Msa1037990:CDS 40.0%
TTAAGAACAAAAACGGGACC+AGG + chr7_1:74758136-74758155 None:intergenic 40.0%
! AAATAGGTGGTGTGGGTTAA+AGG + chr7_1:74758264-74758283 None:intergenic 40.0%
TTCCCAAGAAACCTTAGACA+AGG + chr7_1:74758351-74758370 None:intergenic 40.0%
GTGTCTTACAAAAATGGGTG+GGG + chr7_1:74758425-74758444 None:intergenic 40.0%
AGTGGTCAAATACCAGCATT+TGG - chr7_1:74758634-74758653 Msa1037990:intron 40.0%
AAATCCCAGTTTCCAAATGC+TGG + chr7_1:74758649-74758668 None:intergenic 40.0%
! TTTGAAACTGCAAGACAAGC+TGG - chr7_1:74758697-74758716 Msa1037990:intron 40.0%
GTTGTTATGTGTAGGCAACA+AGG - chr7_1:74759244-74759263 Msa1037990:five_prime_UTR 40.0%
ATGTGTAGGCAACAAGGAAT+AGG - chr7_1:74759250-74759269 Msa1037990:five_prime_UTR 40.0%
TGTGTAGGCAACAAGGAATA+GGG - chr7_1:74759251-74759270 Msa1037990:five_prime_UTR 40.0%
ATGAACATGAGAAAGCAGCA+AGG - chr7_1:74759318-74759337 Msa1037990:five_prime_UTR 40.0%
TGAACATGAGAAAGCAGCAA+GGG - chr7_1:74759319-74759338 Msa1037990:five_prime_UTR 40.0%
TCCACACAGAGATTCATGAG+GGG - chr7_1:74757786-74757805 Msa1037990:three_prime_UTR 45.0%
GGGGCCATTTCCTTTATAAG+TGG - chr7_1:74757805-74757824 Msa1037990:three_prime_UTR 45.0%
GCAGAGTAAATAGGTGGTGT+GGG + chr7_1:74758271-74758290 None:intergenic 45.0%
AGCAGAGTAAATAGGTGGTG+TGG + chr7_1:74758272-74758291 None:intergenic 45.0%
ACGAGTCATGATGACCCATA+TGG - chr7_1:74759084-74759103 Msa1037990:five_prime_UTR 45.0%
TGTACTACTACTAGCCCACT+AGG + chr7_1:74759176-74759195 None:intergenic 45.0%
AGGCAACAAGGAATAGGGAA+AGG - chr7_1:74759256-74759275 Msa1037990:five_prime_UTR 45.0%
! AGGGAAAGTGTACGACGTAA+TGG - chr7_1:74759338-74759357 Msa1037990:five_prime_UTR 45.0%
! ACGACGTAATGGAACATCCA+AGG - chr7_1:74759349-74759368 Msa1037990:five_prime_UTR 45.0%
! GGAAGTCTCGTTGGTTGTAA+TGG + chr7_1:74759408-74759427 None:intergenic 45.0%
!!! ACAGGTTTTGGAAGTCTCGT+TGG + chr7_1:74759417-74759436 None:intergenic 45.0%
TTAGTTGTGCGAAGTAGCTC+AGG + chr7_1:74759465-74759484 None:intergenic 45.0%
AGCTACTTCGCACAACTAAG+AGG - chr7_1:74759466-74759485 Msa1037990:five_prime_UTR 45.0%
GCTACTTCGCACAACTAAGA+GGG - chr7_1:74759467-74759486 Msa1037990:five_prime_UTR 45.0%
GGGTTTCATTTCCAAGTGTC+TGG - chr7_1:74759605-74759624 Msa1037990:five_prime_UTR 45.0%
! CTGCTGCTTGTGTTTCATGA+GGG - chr7_1:74759631-74759650 Msa1037990:five_prime_UTR 45.0%
TCCACACAGAGATTCATGAG+GGG - chr7_1:74757786-74757805 Msa1037990:three_prime_UTR 45.0%
GGGGCCATTTCCTTTATAAG+TGG - chr7_1:74757805-74757824 Msa1037990:three_prime_UTR 45.0%
GCAGAGTAAATAGGTGGTGT+GGG + chr7_1:74758271-74758290 None:intergenic 45.0%
AGCAGAGTAAATAGGTGGTG+TGG + chr7_1:74758272-74758291 None:intergenic 45.0%
ACGAGTCATGATGACCCATA+TGG - chr7_1:74759084-74759103 Msa1037990:five_prime_UTR 45.0%
TGTACTACTACTAGCCCACT+AGG + chr7_1:74759176-74759195 None:intergenic 45.0%
AGGCAACAAGGAATAGGGAA+AGG - chr7_1:74759256-74759275 Msa1037990:five_prime_UTR 45.0%
! AGGGAAAGTGTACGACGTAA+TGG - chr7_1:74759338-74759357 Msa1037990:five_prime_UTR 45.0%
! ACGACGTAATGGAACATCCA+AGG - chr7_1:74759349-74759368 Msa1037990:five_prime_UTR 45.0%
! GGAAGTCTCGTTGGTTGTAA+TGG + chr7_1:74759408-74759427 None:intergenic 45.0%
!!! ACAGGTTTTGGAAGTCTCGT+TGG + chr7_1:74759417-74759436 None:intergenic 45.0%
TTAGTTGTGCGAAGTAGCTC+AGG + chr7_1:74759465-74759484 None:intergenic 45.0%
AGCTACTTCGCACAACTAAG+AGG - chr7_1:74759466-74759485 Msa1037990:five_prime_UTR 45.0%
GCTACTTCGCACAACTAAGA+GGG - chr7_1:74759467-74759486 Msa1037990:five_prime_UTR 45.0%
GGGTTTCATTTCCAAGTGTC+TGG - chr7_1:74759605-74759624 Msa1037990:five_prime_UTR 45.0%
! CTGCTGCTTGTGTTTCATGA+GGG - chr7_1:74759631-74759650 Msa1037990:five_prime_UTR 45.0%
!!! TTTTATTTATTTCATATTTA+TGG + chr7_1:74757718-74757737 None:intergenic 5.0%
!!! TTTTATTTATTTCATATTTA+TGG + chr7_1:74757718-74757737 None:intergenic 5.0%
GTGAAGTGTGGGTGACAAGT+TGG + chr7_1:74757933-74757952 None:intergenic 50.0%
GCTGCACGAACATGAACGTA+AGG + chr7_1:74758760-74758779 None:intergenic 50.0%
TTGTGCGAAGTAGCTCAGGA+GGG + chr7_1:74759461-74759480 None:intergenic 50.0%
CTTCGCACAACTAAGAGGGT+TGG - chr7_1:74759471-74759490 Msa1037990:five_prime_UTR 50.0%
CCTCATGAAACACAAGCAGC+AGG + chr7_1:74759633-74759652 None:intergenic 50.0%
! CCTGCTGCTTGTGTTTCATG+AGG - chr7_1:74759630-74759649 Msa1037990:five_prime_UTR 50.0%
AACGCTAACGCATGTTGTGC+TGG - chr7_1:74759729-74759748 Msa1037990:five_prime_UTR 50.0%
GTGAAGTGTGGGTGACAAGT+TGG + chr7_1:74757933-74757952 None:intergenic 50.0%
GCTGCACGAACATGAACGTA+AGG + chr7_1:74758760-74758779 None:intergenic 50.0%
TTGTGCGAAGTAGCTCAGGA+GGG + chr7_1:74759461-74759480 None:intergenic 50.0%
CTTCGCACAACTAAGAGGGT+TGG - chr7_1:74759471-74759490 Msa1037990:five_prime_UTR 50.0%
CCTCATGAAACACAAGCAGC+AGG + chr7_1:74759633-74759652 None:intergenic 50.0%
! CCTGCTGCTTGTGTTTCATG+AGG - chr7_1:74759630-74759649 Msa1037990:five_prime_UTR 50.0%
AACGCTAACGCATGTTGTGC+TGG - chr7_1:74759729-74759748 Msa1037990:five_prime_UTR 50.0%
GCCCCTCATGAATCTCTGTG+TGG + chr7_1:74757790-74757809 None:intergenic 55.0%
GTTGTGCGAAGTAGCTCAGG+AGG + chr7_1:74759462-74759481 None:intergenic 55.0%
GCCCCTCATGAATCTCTGTG+TGG + chr7_1:74757790-74757809 None:intergenic 55.0%
GTTGTGCGAAGTAGCTCAGG+AGG + chr7_1:74759462-74759481 None:intergenic 55.0%
AGCAGCAGGCACCAGACACT+TGG + chr7_1:74759619-74759638 None:intergenic 60.0%
AGCAGCAGGCACCAGACACT+TGG + chr7_1:74759619-74759638 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74757669 74759892 74757669 ID=Msa1037990;Name=Msa1037990
chr7_1 mRNA 74757669 74759892 74757669 ID=Msa1037990-mRNA-1;Parent=Msa1037990;Name=Msa1037990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=848|1|1|1|1|1|4|242|168
chr7_1 exon 74757669 74757967 74757669 ID=Msa1037990-mRNA-1:exon:18907;Parent=Msa1037990-mRNA-1
chr7_1 exon 74758073 74758303 74758073 ID=Msa1037990-mRNA-1:exon:18906;Parent=Msa1037990-mRNA-1
chr7_1 exon 74758727 74758939 74758727 ID=Msa1037990-mRNA-1:exon:18905;Parent=Msa1037990-mRNA-1
chr7_1 exon 74759039 74759892 74759039 ID=Msa1037990-mRNA-1:exon:18904;Parent=Msa1037990-mRNA-1
chr7_1 five_prime_UTR 74759045 74759892 74759045 ID=Msa1037990-mRNA-1:five_prime_utr;Parent=Msa1037990-mRNA-1
chr7_1 CDS 74759039 74759044 74759039 ID=Msa1037990-mRNA-1:cds;Parent=Msa1037990-mRNA-1
chr7_1 CDS 74758727 74758939 74758727 ID=Msa1037990-mRNA-1:cds;Parent=Msa1037990-mRNA-1
chr7_1 CDS 74758073 74758303 74758073 ID=Msa1037990-mRNA-1:cds;Parent=Msa1037990-mRNA-1
chr7_1 CDS 74757911 74757967 74757911 ID=Msa1037990-mRNA-1:cds;Parent=Msa1037990-mRNA-1
chr7_1 three_prime_UTR 74757669 74757910 74757669 ID=Msa1037990-mRNA-1:three_prime_utr;Parent=Msa1037990-mRNA-1
Gene Sequence

>Msa1037990

ATGGATGAATGGAAGAGAAGTGGTCAAATACCAGCATTTGGAAACTGGGATTTTGCAAATGAGTTACCAATAACTCAATACTTTGAAACTGCAAGACAAGCTGGTTTGATTCGTTACAGTTCTTCATCTGGTGAAAGTGATCCTTACGTTCATGTTCGTGCAGCAGAACATGATCTTTATGCTGTTTCTGTTGATTATAATAAGAAACCAGTTCGAAAGGCAACAAGGAATAGGGAAAGGAAGTACCAAAATGTTATGGTGAATGAGAAAGAAACAACAATGAACATGAGAAAGCAGCAAGGGAAAGTGTACGACGTAATGGAACATCCAAGGAAGCAAATGAACAAGAAGGTACATGTTAGTGCTCCATTACAACCAACGAGACTTCCAAAACCTGTTGATGAAGATCTCTATAAGATCCCTCCTGAGCTACTTCGCACAACTAAGAGGAAAAAAATGTTGGGTTTCATTTCCAAGTGTCTGGTGCCTGCTGCTTGTGTTTCATGA
Protein sequence

>Msa1037990

MDEWKRSGQIPAFGNWDFANELPITQYFETARQAGLIRYSSSSGESDPYVHVRAAEHDLYAVSVDYNKKPVRKATRNRERKYQNVMVNEKETTMNMRKQQGKVYDVMEHPRKQMNKKVHVSAPLQPTRLPKPVDEDLYKIPPELLRTTKRKKMLGFISKCLVPAACVS*