AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833200 MtrunA17_Chr5g0398491 95.930 172 7 0 1 172 1 172 3.14e-121 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833200 AT4G22830.1 81.905 105 19 0 63 167 82 186 1.51e-60 186
Msa0833200 AT4G22830.2 82.692 104 18 0 64 167 91 194 4.16e-60 186

Find 63 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCCTTCTTCATATAAA+AGG 0.122173 5_4:-6363589 None:intergenic
ATTTGACGGAAACGGGATTT+TGG 0.159414 5_4:-6359238 None:intergenic
ATGGCTTTGGTGTGGCAATA+TGG 0.236845 5_4:+6359589 Msa0833200:CDS
CAAGCGGCACTAACTGTTAT+AGG 0.288834 5_4:+6363124 Msa0833200:CDS
CTCTTGAATTTGACGGAAAC+GGG 0.296168 5_4:-6359245 None:intergenic
TGGCAATATGGGGAGAAATC+TGG 0.321722 5_4:+6359601 Msa0833200:CDS
AAGCTTGGAAGGGTCTTTCC+TGG 0.322451 5_4:+6359629 Msa0833200:CDS
TCAATCTAATATTGCAAGTT+GGG 0.342782 5_4:-6359103 None:intergenic
TGGCTTTGGTGTGGCAATAT+GGG 0.345301 5_4:+6359590 Msa0833200:CDS
AATAACAGTAGCTATCGATT+TGG 0.348207 5_4:+6359273 Msa0833200:CDS
CGCGGGATGATTTATATATC+CGG 0.376834 5_4:-6363174 None:intergenic
ATGCACTGTCTTTGCCCACT+TGG 0.377337 5_4:+6359400 Msa0833200:CDS
TTGTAAATCAGTAAAAGATT+AGG 0.381733 5_4:-6363267 None:intergenic
ACTCTTGAATTTGACGGAAA+CGG 0.400641 5_4:-6359246 None:intergenic
TGATCTTATCTGTGTAACTT+TGG 0.404034 5_4:+6363354 Msa0833200:three_prime_UTR
TTGAAAACTCTTGAATTTGA+CGG 0.404161 5_4:-6359252 None:intergenic
TTCAATCTAATATTGCAAGT+TGG 0.416584 5_4:-6359104 None:intergenic
AAGGATTATAGCTATGGCTT+TGG 0.426099 5_4:+6359576 Msa0833200:intron
AGCTTGGAAGGGTCTTTCCT+GGG 0.439797 5_4:+6359630 Msa0833200:CDS
AAGTGGGATAGACCAGCTTT+CGG 0.451603 5_4:-6359306 None:intergenic
GGCAATATGGGGAGAAATCT+GGG 0.453113 5_4:+6359602 Msa0833200:CDS
TGCACTGTCTTTGCCCACTT+GGG 0.453403 5_4:+6359401 Msa0833200:CDS
TTTGCCTTCTTCATATAAAA+GGG 0.458042 5_4:-6363588 None:intergenic
GAAGGGTCTTTCCTGGGGCA+TGG 0.465621 5_4:+6359636 Msa0833200:CDS
TTGACATTGACAAATAATAC+AGG 0.469573 5_4:-6363454 None:intergenic
TTTCTACAACGTTGAGGAAG+TGG 0.473835 5_4:-6359323 None:intergenic
TTGTTGTAGGTACCTCTACT+TGG 0.477528 5_4:+6360587 Msa0833200:intron
AGAAATCTGGGCATGAAGCT+TGG 0.487427 5_4:+6359614 Msa0833200:CDS
TTAATGTATCAGTATGCAGT+TGG 0.496794 5_4:-6363420 None:intergenic
CAAAATTATTCAGTGACAGA+TGG 0.507531 5_4:+6363287 Msa0833200:three_prime_UTR
TTGTAGGTACCTCTACTTGG+TGG 0.514763 5_4:+6360590 Msa0833200:intron
ATGTCTCCAGCGTCGTTGAA+TGG 0.515806 5_4:+6359430 Msa0833200:CDS
CAACGTGGCTGCAGCAGCCA+TGG 0.517662 5_4:-6359187 None:intergenic
ATCTGGGCATGAAGCTTGGA+AGG 0.518052 5_4:+6359618 Msa0833200:CDS
AATATTCTCAGAGCTTTCGC+GGG 0.537497 5_4:-6363191 None:intergenic
GGAACCTTAAAACCGAAAGC+TGG 0.539599 5_4:+6359294 Msa0833200:CDS
AAATATTCTCAGAGCTTTCG+CGG 0.544529 5_4:-6363192 None:intergenic
TCTTGAAGTTCAAGTTGAAG+TGG 0.545704 5_4:-6359369 None:intergenic
TAAGATCAAAAGCAACATCA+AGG 0.554859 5_4:-6363339 None:intergenic
CAATGTGCATAGCCGCATAC+CGG 0.555634 5_4:+6363155 Msa0833200:CDS
CAATCTAATATTGCAAGTTG+GGG 0.558435 5_4:-6359102 None:intergenic
GCTTGGAAGGGTCTTTCCTG+GGG 0.562740 5_4:+6359631 Msa0833200:CDS
TTGACAAATAATACAGGGAA+AGG 0.566224 5_4:-6363448 None:intergenic
TTCTACAACGTTGAGGAAGT+GGG 0.570080 5_4:-6359322 None:intergenic
TATGCAGTTGGATTCTCTAG+TGG 0.587306 5_4:-6363408 None:intergenic
GGCTTTGGTGTGGCAATATG+GGG 0.589415 5_4:+6359591 Msa0833200:CDS
AGTGGGCAAAGACAGTGCAT+TGG 0.590819 5_4:-6359397 None:intergenic
TTGATACCATTCAACGACGC+TGG 0.597431 5_4:-6359436 None:intergenic
TTATAACTCTGACTCCCTTG+AGG 0.597717 5_4:+6360643 Msa0833200:CDS
GGCAAAGACAGTGCATTGGA+TGG 0.598751 5_4:-6359393 None:intergenic
TATTAGATTGAACATGTCGA+TGG 0.599266 5_4:+6359115 Msa0833200:five_prime_UTR
AAAAGGCTTTCTCACCTCAA+GGG 0.622988 5_4:-6360657 None:intergenic
GGAGACATGAACAGCCCAAG+TGG 0.630578 5_4:-6359415 None:intergenic
CAAAATGCTCCACCAAGTAG+AGG 0.635947 5_4:-6360599 None:intergenic
AAGTTGTTTCTACAACGTTG+AGG 0.647322 5_4:-6359329 None:intergenic
TTATAGCTATGGCTTTGGTG+TGG 0.649963 5_4:+6359581 Msa0833200:CDS
AGAAGGAAGTAGCAAAACCA+TGG 0.662724 5_4:+6359170 Msa0833200:exon
AAGTGGAAGTTGAATGTACG+AGG 0.666941 5_4:-6359352 None:intergenic
TCTGGGCATGAAGCTTGGAA+GGG 0.672398 5_4:+6359619 Msa0833200:CDS
GAGACATGAACAGCCCAAGT+GGG 0.672772 5_4:-6359414 None:intergenic
TGATTTATATATCCGGTATG+CGG 0.678633 5_4:-6363167 None:intergenic
GGTATTGGTAGCTCTTCAAG+CGG 0.681354 5_4:+6363108 Msa0833200:intron
TGACATTGACAAATAATACA+GGG 0.685502 5_4:-6363453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAAAAAAAAAAAA+AGG + chr5_4:6359557-6359576 Msa0833200:intron 0.0%
!!! TTTTTTTTTAATTTATTTTT+TGG - chr5_4:6360374-6360393 None:intergenic 0.0%
!!! ATTTTACTGTTATTATTATT+AGG + chr5_4:6359693-6359712 Msa0833200:intron 10.0%
!!! ATTCATTCTTTTTTTTTTTT+TGG + chr5_4:6360097-6360116 Msa0833200:intron 10.0%
!!! AAAAAATTGATTTATCATTT+TGG + chr5_4:6360388-6360407 Msa0833200:intron 10.0%
!!! AAAAATTGATTTATCATTTT+GGG + chr5_4:6360389-6360408 Msa0833200:intron 10.0%
!!! ATATAAATAATCTCTTTTTA+TGG - chr5_4:6361427-6361446 None:intergenic 10.0%
!!! TTAAAGACATTTTAAATATG+TGG - chr5_4:6360163-6360182 None:intergenic 15.0%
!!! AAAATTGATTTATCATTTTG+GGG + chr5_4:6360390-6360409 Msa0833200:intron 15.0%
!!! TACAATTTGTTTCATTAATT+TGG + chr5_4:6362004-6362023 Msa0833200:intron 15.0%
!!! TTTTTTTTTTCTTTTTCTGA+AGG - chr5_4:6362105-6362124 None:intergenic 15.0%
!!! AATACAGAAAATTTGTTTTT+TGG + chr5_4:6362904-6362923 Msa0833200:intron 15.0%
!! TTAAAATACTAGAGTAGTAT+TGG - chr5_4:6359517-6359536 None:intergenic 20.0%
!! AAAAAAAAGGATTATAGCTA+TGG + chr5_4:6359570-6359589 Msa0833200:intron 20.0%
!! TAAAAAATTGAGTATAGTTG+AGG + chr5_4:6359741-6359760 Msa0833200:intron 20.0%
!! ATATTTGAACACAATTTGAA+TGG + chr5_4:6359988-6360007 Msa0833200:intron 20.0%
!! TACAACAATTAGATAACATA+GGG - chr5_4:6360575-6360594 None:intergenic 20.0%
!!! ATAATCTCTTTTTATGGAAT+TGG - chr5_4:6361421-6361440 None:intergenic 20.0%
!! TTTATATTCATTGTCATGAT+AGG + chr5_4:6361440-6361459 Msa0833200:intron 20.0%
!!! CTTAGGTATAATATAGATTT+TGG - chr5_4:6361699-6361718 None:intergenic 20.0%
!! CAAAATCTATATTATACCTA+AGG + chr5_4:6361697-6361716 Msa0833200:intron 20.0%
!!! TAACAGTTTTAATTTCATGA+AGG - chr5_4:6361777-6361796 None:intergenic 20.0%
!!! AAATAAGAATGATGTTTTTG+TGG - chr5_4:6361894-6361913 None:intergenic 20.0%
!!! TTTTAAACAGTTTCTTTTCT+TGG + chr5_4:6361916-6361935 Msa0833200:intron 20.0%
!! AAGAAAAAAAAAACTTCTGT+AGG + chr5_4:6362112-6362131 Msa0833200:intron 20.0%
!! TATGACTATAATACAAAATG+TGG + chr5_4:6362369-6362388 Msa0833200:intron 20.0%
!!! AATTATTAGTTTTCCTTCAA+TGG - chr5_4:6362565-6362584 None:intergenic 20.0%
!! ACTAATAATTAAAGACGAAA+TGG + chr5_4:6362575-6362594 Msa0833200:intron 20.0%
!! CTAATAATTAAAGACGAAAT+GGG + chr5_4:6362576-6362595 Msa0833200:intron 20.0%
!! TATATATAATAGCAGTACAA+TGG - chr5_4:6362870-6362889 None:intergenic 20.0%
!! TTGTAAATCAGTAAAAGATT+AGG - chr5_4:6363270-6363289 None:intergenic 20.0%
! TCAATCTAATATTGCAAGTT+GGG - chr5_4:6359106-6359125 None:intergenic 25.0%
! TTCAATCTAATATTGCAAGT+TGG - chr5_4:6359107-6359126 None:intergenic 25.0%
! TTGAAAACTCTTGAATTTGA+CGG - chr5_4:6359255-6359274 None:intergenic 25.0%
!! TCAAAATTGCGTTTGATTTA+TGG - chr5_4:6359904-6359923 None:intergenic 25.0%
!! ATTTTGAACGTCATTAACTA+TGG + chr5_4:6359917-6359936 Msa0833200:intron 25.0%
! TTATATTCATTAATCACCAC+CGG + chr5_4:6360131-6360150 Msa0833200:intron 25.0%
! TTTAAATATGTGGTTACATC+CGG - chr5_4:6360153-6360172 None:intergenic 25.0%
! GTATCTAAACATTATACGTT+TGG - chr5_4:6360301-6360320 None:intergenic 25.0%
! CTACAACAATTAGATAACAT+AGG - chr5_4:6360576-6360595 None:intergenic 25.0%
! CTATGTTATCTAATTGTTGT+AGG + chr5_4:6360574-6360593 Msa0833200:intron 25.0%
! TTAATAGATGTTCTGTATAG+AGG - chr5_4:6360685-6360704 None:intergenic 25.0%
!!! ATTTCGGCTTTAAATATGAA+CGG - chr5_4:6360740-6360759 None:intergenic 25.0%
!! TTCATATTTAAAGCCGAAAT+GGG + chr5_4:6360740-6360759 Msa0833200:intron 25.0%
! TAAACAACACTTGAAAGAAT+AGG - chr5_4:6361039-6361058 None:intergenic 25.0%
! ATTGAATTTGGTCAAAATGA+GGG + chr5_4:6361119-6361138 Msa0833200:intron 25.0%
! CATCATATAAGTGTTTATCA+TGG - chr5_4:6361295-6361314 None:intergenic 25.0%
! ATCTATATTATACCTAAGGT+TGG + chr5_4:6361701-6361720 Msa0833200:intron 25.0%
! TCTATATTATACCTAAGGTT+GGG + chr5_4:6361702-6361721 Msa0833200:intron 25.0%
!!! TTTTGTAACTTGCTTCTTTT+TGG + chr5_4:6361857-6361876 Msa0833200:intron 25.0%
! ATTCAATTCCTCAAATTACT+TGG - chr5_4:6361985-6362004 None:intergenic 25.0%
!!! TTTACCTTAGATTTTGAGAA+TGG - chr5_4:6362047-6362066 None:intergenic 25.0%
! AAAAAAAACTTCTGTAGGTT+TGG + chr5_4:6362117-6362136 Msa0833200:intron 25.0%
! TATAATACAAAATGTGGCTT+AGG + chr5_4:6362375-6362394 Msa0833200:intron 25.0%
! TAATACATTGGTATACCAAA+TGG - chr5_4:6362663-6362682 None:intergenic 25.0%
! ATTTGGTATACCAATGTATT+AGG + chr5_4:6362662-6362681 Msa0833200:intron 25.0%
!!! AGATTTTAGCACAATATGTA+CGG - chr5_4:6363028-6363047 None:intergenic 25.0%
! AATCTGATTGAATGTGAAAT+AGG + chr5_4:6363043-6363062 Msa0833200:intron 25.0%
! ATCTGATTGAATGTGAAATA+GGG + chr5_4:6363044-6363063 Msa0833200:intron 25.0%
! TGACATTGACAAATAATACA+GGG - chr5_4:6363456-6363475 None:intergenic 25.0%
! TTGACATTGACAAATAATAC+AGG - chr5_4:6363457-6363476 None:intergenic 25.0%
CAATCTAATATTGCAAGTTG+GGG - chr5_4:6359105-6359124 None:intergenic 30.0%
TATTAGATTGAACATGTCGA+TGG + chr5_4:6359115-6359134 Msa0833200:five_prime_UTR 30.0%
GAGTTATCTGAAAAAACAAG+AGG + chr5_4:6359144-6359163 Msa0833200:five_prime_UTR 30.0%
! AATAACAGTAGCTATCGATT+TGG + chr5_4:6359273-6359292 Msa0833200:CDS 30.0%
! TTTAACTTATCCGTTCTATC+TGG + chr5_4:6359466-6359485 Msa0833200:intron 30.0%
AAGTCCTACATTTCTTGTAA+AGG + chr5_4:6359811-6359830 Msa0833200:intron 30.0%
TCTTCCTTTACAAGAAATGT+AGG - chr5_4:6359818-6359837 None:intergenic 30.0%
ACATTTCTTGTAAAGGAAGA+AGG + chr5_4:6359818-6359837 Msa0833200:intron 30.0%
! CGTCATTAACTATGGTTTTT+AGG + chr5_4:6359925-6359944 Msa0833200:intron 30.0%
ATCGTGATTAATGACATGTA+TGG + chr5_4:6360045-6360064 Msa0833200:intron 30.0%
TGATTAATGACATGTATGGA+CGG + chr5_4:6360049-6360068 Msa0833200:intron 30.0%
ACTACATTTGCAATTGCAAA+TGG - chr5_4:6360537-6360556 None:intergenic 30.0%
TGTTCTGTATAGAGGAAAAA+AGG - chr5_4:6360677-6360696 None:intergenic 30.0%
! ACTACTAGAATTGTTGATTG+AGG + chr5_4:6360711-6360730 Msa0833200:intron 30.0%
! CTACTAGAATTGTTGATTGA+GGG + chr5_4:6360712-6360731 Msa0833200:intron 30.0%
! GTTCATATTTAAAGCCGAAA+TGG + chr5_4:6360739-6360758 Msa0833200:intron 30.0%
TTATACAAGAAGACCCATTT+CGG - chr5_4:6360756-6360775 None:intergenic 30.0%
ATGTTGAGAGAAAATCATTC+AGG - chr5_4:6360825-6360844 None:intergenic 30.0%
! TGTCATGAATTTGTTCCATA+AGG - chr5_4:6360969-6360988 None:intergenic 30.0%
GATTGAATTTGGTCAAAATG+AGG + chr5_4:6361118-6361137 Msa0833200:intron 30.0%
CATTTAGGGGACATTTAAAT+TGG + chr5_4:6361157-6361176 Msa0833200:intron 30.0%
AAATCTGGTCTATTAGGAAT+TGG + chr5_4:6361362-6361381 Msa0833200:intron 30.0%
GCAAAATTCTGAATGTATTG+TGG - chr5_4:6361494-6361513 None:intergenic 30.0%
AATGAGTGAATGATCGTAAA+AGG + chr5_4:6361725-6361744 Msa0833200:intron 30.0%
!! ATGTTTTTGTGGTGGTTAAT+TGG - chr5_4:6361883-6361902 None:intergenic 30.0%
!! TAAGAATGATGTTTTTGTGG+TGG - chr5_4:6361891-6361910 None:intergenic 30.0%
!! ATTTTGAGAATGGTTAGAGA+TGG - chr5_4:6362037-6362056 None:intergenic 30.0%
CTAACCATTCTCAAAATCTA+AGG + chr5_4:6362040-6362059 Msa0833200:intron 30.0%
!! GATAAGTTTGCTGTGTTTAA+AGG + chr5_4:6362399-6362418 Msa0833200:intron 30.0%
AAACTAAGACTGTAAGTTAG+TGG + chr5_4:6362505-6362524 Msa0833200:intron 30.0%
AGTCTACATTCAGATAGAAA+GGG - chr5_4:6362608-6362627 None:intergenic 30.0%
AAGTCTACATTCAGATAGAA+AGG - chr5_4:6362609-6362628 None:intergenic 30.0%
TTAGAAACAAAACTGCCATT+TGG + chr5_4:6362645-6362664 Msa0833200:intron 30.0%
TGCAATCATAATGTCTTCTA+TGG + chr5_4:6362942-6362961 Msa0833200:intron 30.0%
TCTGATTGAATGTGAAATAG+GGG + chr5_4:6363045-6363064 Msa0833200:intron 30.0%
GGTTCTGCATATGAAATTAA+TGG + chr5_4:6363066-6363085 Msa0833200:intron 30.0%
TTGAAATGAATTGCAGGTAT+TGG + chr5_4:6363093-6363112 Msa0833200:intron 30.0%
TGATTTATATATCCGGTATG+CGG - chr5_4:6363170-6363189 None:intergenic 30.0%
CAAAATTATTCAGTGACAGA+TGG + chr5_4:6363287-6363306 Msa0833200:three_prime_UTR 30.0%
TAAGATCAAAAGCAACATCA+AGG - chr5_4:6363342-6363361 None:intergenic 30.0%
TGATCTTATCTGTGTAACTT+TGG + chr5_4:6363354-6363373 Msa0833200:three_prime_UTR 30.0%
TTAATGTATCAGTATGCAGT+TGG - chr5_4:6363423-6363442 None:intergenic 30.0%
TTGACAAATAATACAGGGAA+AGG - chr5_4:6363451-6363470 None:intergenic 30.0%
!! ATTTTGGGAGTAGAACAACA+TGG - chr5_4:6359225-6359244 None:intergenic 35.0%
ACTCTTGAATTTGACGGAAA+CGG - chr5_4:6359249-6359268 None:intergenic 35.0%
!! AAGTTGTTTCTACAACGTTG+AGG - chr5_4:6359332-6359351 None:intergenic 35.0%
!! TCTTGAAGTTCAAGTTGAAG+TGG - chr5_4:6359372-6359391 None:intergenic 35.0%
! TACTAGAGTACCAGATAGAA+CGG - chr5_4:6359479-6359498 None:intergenic 35.0%
AAGGATTATAGCTATGGCTT+TGG + chr5_4:6359576-6359595 Msa0833200:intron 35.0%
GTTGAGGTAGTTCAAATTGT+TGG + chr5_4:6359757-6359776 Msa0833200:intron 35.0%
!! GTTCAAATTGTTGGTGTTGT+TGG + chr5_4:6359766-6359785 Msa0833200:intron 35.0%
ACCAACCAAGACTATATACA+TGG + chr5_4:6359843-6359862 Msa0833200:intron 35.0%
! TCCATGTATATAGTCTTGGT+TGG - chr5_4:6359847-6359866 None:intergenic 35.0%
AGAGTCCATGTATATAGTCT+TGG - chr5_4:6359851-6359870 None:intergenic 35.0%
AGCAAATTTCGACAACAATC+TGG - chr5_4:6360190-6360209 None:intergenic 35.0%
GCGCTTAAACACTATACATT+CGG + chr5_4:6360449-6360468 Msa0833200:intron 35.0%
TTGTCACAAAACACCATGAA+TGG + chr5_4:6360782-6360801 Msa0833200:intron 35.0%
!! AATTTGCTTTTAAGCTCCAG+CGG - chr5_4:6361004-6361023 None:intergenic 35.0%
TGTTTATCATGGAGAGCTTA+TGG - chr5_4:6361284-6361303 None:intergenic 35.0%
AATGCCAAATGGTCAAAATC+TGG + chr5_4:6361347-6361366 Msa0833200:intron 35.0%
!! TAGACCAGATTTTGACCATT+TGG - chr5_4:6361354-6361373 None:intergenic 35.0%
TGGTCAAAATCTGGTCTATT+AGG + chr5_4:6361356-6361375 Msa0833200:intron 35.0%
TGGTCTATTAGGAATTGGAT+TGG + chr5_4:6361367-6361386 Msa0833200:intron 35.0%
!! TGTGATGAGATTTTGATCAG+AGG - chr5_4:6361398-6361417 None:intergenic 35.0%
CAATTGTTGACAGCAAAAGA+TGG - chr5_4:6361614-6361633 None:intergenic 35.0%
ACAGCATCAACAACAACAAA+AGG - chr5_4:6361668-6361687 None:intergenic 35.0%
AGTGAATGATCGTAAAAGGA+AGG + chr5_4:6361729-6361748 Msa0833200:intron 35.0%
ACAACCAATTCAGACATTGT+AGG + chr5_4:6361957-6361976 Msa0833200:intron 35.0%
TGTAGGTACCAAGTAATTTG+AGG + chr5_4:6361974-6361993 Msa0833200:intron 35.0%
CCTAGATTGTCTAAAAAGGA+TGG - chr5_4:6362295-6362314 None:intergenic 35.0%
! CCATCCTTTTTAGACAATCT+AGG + chr5_4:6362292-6362311 Msa0833200:intron 35.0%
GAGGTATGTAACTAGAGAAT+GGG + chr5_4:6362466-6362485 Msa0833200:intron 35.0%
GACTGTAAGTTAGTGGAAAT+TGG + chr5_4:6362512-6362531 Msa0833200:intron 35.0%
GTCTACATTCAGATAGAAAG+GGG - chr5_4:6362607-6362626 None:intergenic 35.0%
! GATTCGACAAAGTTTTACGT+TGG - chr5_4:6362757-6362776 None:intergenic 35.0%
TTTGTCGAATCTCTATGACA+TGG + chr5_4:6362766-6362785 Msa0833200:intron 35.0%
ACATGGACCAAATACGATTA+TGG + chr5_4:6362783-6362802 Msa0833200:intron 35.0%
AATGGTATACAACAACAACC+AGG - chr5_4:6362852-6362871 None:intergenic 35.0%
TTCTTGTTGCATGAGAACAA+TGG + chr5_4:6362994-6363013 Msa0833200:intron 35.0%
!!! GGCTTTTTGAAATGAATTGC+AGG + chr5_4:6363087-6363106 Msa0833200:intron 35.0%
AAATATTCTCAGAGCTTTCG+CGG - chr5_4:6363195-6363214 None:intergenic 35.0%
GAAAAAACAAGAGGCCAAGA+AGG + chr5_4:6359153-6359172 Msa0833200:five_prime_UTR 40.0%
!! TGGTTTTGCTACTTCCTTCT+TGG - chr5_4:6359170-6359189 None:intergenic 40.0%
AGAAGGAAGTAGCAAAACCA+TGG + chr5_4:6359170-6359189 Msa0833200:exon 40.0%
!! TGGTTTTGCTAAGTACAACG+TGG - chr5_4:6359205-6359224 None:intergenic 40.0%
! TTTGACGGAAACGGGATTTT+GGG - chr5_4:6359240-6359259 None:intergenic 40.0%
! ATTTGACGGAAACGGGATTT+TGG - chr5_4:6359241-6359260 None:intergenic 40.0%
CTCTTGAATTTGACGGAAAC+GGG - chr5_4:6359248-6359267 None:intergenic 40.0%
! TAGACCAGCTTTCGGTTTTA+AGG - chr5_4:6359301-6359320 None:intergenic 40.0%
TTCTACAACGTTGAGGAAGT+GGG - chr5_4:6359325-6359344 None:intergenic 40.0%
TTTCTACAACGTTGAGGAAG+TGG - chr5_4:6359326-6359345 None:intergenic 40.0%
AAGTGGAAGTTGAATGTACG+AGG - chr5_4:6359355-6359374 None:intergenic 40.0%
!! TTATAGCTATGGCTTTGGTG+TGG + chr5_4:6359581-6359600 Msa0833200:CDS 40.0%
TAAAAAACTTACCATGCCCC+AGG - chr5_4:6359650-6359669 None:intergenic 40.0%
AAATATGTGGTTACATCCGG+TGG - chr5_4:6360150-6360169 None:intergenic 40.0%
!! ACTCTAGAGCTAGTCTTGTA+TGG + chr5_4:6360268-6360287 Msa0833200:intron 40.0%
GTAGCAGAGAAATACTTGCT+TGG - chr5_4:6360483-6360502 None:intergenic 40.0%
AGCAAGTATTTCTCTGCTAC+TGG + chr5_4:6360483-6360502 Msa0833200:intron 40.0%
TTGTTGTAGGTACCTCTACT+TGG + chr5_4:6360587-6360606 Msa0833200:intron 40.0%
TTATAACTCTGACTCCCTTG+AGG + chr5_4:6360643-6360662 Msa0833200:CDS 40.0%
AAAAGGCTTTCTCACCTCAA+GGG - chr5_4:6360660-6360679 None:intergenic 40.0%
AAAAAGGCTTTCTCACCTCA+AGG - chr5_4:6360661-6360680 None:intergenic 40.0%
CAAAACACCATGAATGGCTA+CGG + chr5_4:6360788-6360807 Msa0833200:intron 40.0%
! CATTTTACTTGTCGCAGCAA+TGG + chr5_4:6360854-6360873 Msa0833200:intron 40.0%
GTGCAAGAAAAAGCAAAGCA+CGG + chr5_4:6361073-6361092 Msa0833200:intron 40.0%
TGCAAGAAAAAGCAAAGCAC+GGG + chr5_4:6361074-6361093 Msa0833200:intron 40.0%
TCAGGTAGAGGTTGCATTTA+GGG + chr5_4:6361143-6361162 Msa0833200:intron 40.0%
AACAGTATCACGAGTGCTTA+TGG - chr5_4:6361204-6361223 None:intergenic 40.0%
TTAGACAGCATATGAAGGAC+TGG - chr5_4:6361323-6361342 None:intergenic 40.0%
! TCGCTTTAGACAGCATATGA+AGG - chr5_4:6361328-6361347 None:intergenic 40.0%
! TGTCTAAAGCGAATGCCAAA+TGG + chr5_4:6361336-6361355 Msa0833200:intron 40.0%
ACAAAGCAAAGCTGAAAGCT+GGG + chr5_4:6361514-6361533 Msa0833200:intron 40.0%
CTCATTTGCCTAGTTGTGAA+AGG + chr5_4:6361550-6361569 Msa0833200:intron 40.0%
ATTTGCCTAGTTGTGAAAGG+CGG + chr5_4:6361553-6361572 Msa0833200:intron 40.0%
GCGGTTGGAGTTGAAATTAT+TGG + chr5_4:6361572-6361591 Msa0833200:intron 40.0%
AACAATTGTTGCCATCACCA+AGG + chr5_4:6361626-6361645 Msa0833200:intron 40.0%
ACAACAAAAGGAGGAGAAAC+CGG - chr5_4:6361656-6361675 None:intergenic 40.0%
GCATCAACAACAACAAAAGG+AGG - chr5_4:6361665-6361684 None:intergenic 40.0%
ATTCACTCATTCCCAACCTT+AGG - chr5_4:6361716-6361735 None:intergenic 40.0%
GGTACCTACAATGTCTGAAT+TGG - chr5_4:6361964-6361983 None:intergenic 40.0%
ACTTCTGTAGGTTTGGATAC+AGG + chr5_4:6362124-6362143 Msa0833200:intron 40.0%
CAAAACTCTAGCACAGTTGT+CGG - chr5_4:6362166-6362185 None:intergenic 40.0%
AAAAAGGATGGTGAGAGATG+TGG - chr5_4:6362283-6362302 None:intergenic 40.0%
CAGGCCTAGATTGTCTAAAA+AGG - chr5_4:6362299-6362318 None:intergenic 40.0%
ACTAGCACAGTTGAACAATC+AGG - chr5_4:6362318-6362337 None:intergenic 40.0%
!! GGACATGGTTGATGAAAGAA+GGG - chr5_4:6362442-6362461 None:intergenic 40.0%
!! AGGACATGGTTGATGAAAGA+AGG - chr5_4:6362443-6362462 None:intergenic 40.0%
CTTTCATCAACCATGTCCTA+TGG + chr5_4:6362444-6362463 Msa0833200:intron 40.0%
TTACATACCTCCATAGGACA+TGG - chr5_4:6362457-6362476 None:intergenic 40.0%
CTCTAGTTACATACCTCCAT+AGG - chr5_4:6362463-6362482 None:intergenic 40.0%
! GGAGGTATGTAACTAGAGAA+TGG + chr5_4:6362465-6362484 Msa0833200:intron 40.0%
CAAGGCTATGCCTAATACAT+TGG - chr5_4:6362675-6362694 None:intergenic 40.0%
TGAAAGAAGAGGGTTGTGTT+AGG + chr5_4:6362722-6362741 Msa0833200:intron 40.0%
GATTGCGCCATAATCGTATT+TGG - chr5_4:6362793-6362812 None:intergenic 40.0%
!! CTTTTCCCACTAAGTTGGAT+CGG - chr5_4:6362828-6362847 None:intergenic 40.0%
CGCGGGATGATTTATATATC+CGG - chr5_4:6363177-6363196 None:intergenic 40.0%
AATATTCTCAGAGCTTTCGC+GGG - chr5_4:6363194-6363213 None:intergenic 40.0%
TATGCAGTTGGATTCTCTAG+TGG - chr5_4:6363411-6363430 None:intergenic 40.0%
GGAACCTTAAAACCGAAAGC+TGG + chr5_4:6359294-6359313 Msa0833200:CDS 45.0%
AAGTGGGATAGACCAGCTTT+CGG - chr5_4:6359309-6359328 None:intergenic 45.0%
TTGATACCATTCAACGACGC+TGG - chr5_4:6359439-6359458 None:intergenic 45.0%
!! ATGGCTTTGGTGTGGCAATA+TGG + chr5_4:6359589-6359608 Msa0833200:CDS 45.0%
!! TGGCTTTGGTGTGGCAATAT+GGG + chr5_4:6359590-6359609 Msa0833200:CDS 45.0%
TGGCAATATGGGGAGAAATC+TGG + chr5_4:6359601-6359620 Msa0833200:CDS 45.0%
GGCAATATGGGGAGAAATCT+GGG + chr5_4:6359602-6359621 Msa0833200:CDS 45.0%
AGAAATCTGGGCATGAAGCT+TGG + chr5_4:6359614-6359633 Msa0833200:CDS 45.0%
!! GACTAGCTCTAGAGTAGCAA+TGG - chr5_4:6360263-6360282 None:intergenic 45.0%
ACACACACAGAGATGCAAAG+AGG - chr5_4:6360423-6360442 None:intergenic 45.0%
TTGTAGGTACCTCTACTTGG+TGG + chr5_4:6360590-6360609 Msa0833200:intron 45.0%
CAAAATGCTCCACCAAGTAG+AGG - chr5_4:6360602-6360621 None:intergenic 45.0%
! GAGCATTTTGTGCATGCACA+TGG + chr5_4:6360612-6360631 Msa0833200:CDS 45.0%
AAACCTTCCGTAGCCATTCA+TGG - chr5_4:6360798-6360817 None:intergenic 45.0%
TCAACAACGTCTCGACCTTA+TGG + chr5_4:6360951-6360970 Msa0833200:intron 45.0%
GACAGTTTAAACTAAGCCGC+TGG + chr5_4:6360985-6361004 Msa0833200:intron 45.0%
GCAAGAAAAAGCAAAGCACG+GGG + chr5_4:6361075-6361094 Msa0833200:intron 45.0%
TTTGGTCAAAATGAGGGCTC+AGG + chr5_4:6361125-6361144 Msa0833200:intron 45.0%
CTCAGGTAGAGGTTGCATTT+AGG + chr5_4:6361142-6361161 Msa0833200:intron 45.0%
CAGGTAGAGGTTGCATTTAG+GGG + chr5_4:6361144-6361163 Msa0833200:intron 45.0%
TCACGAGTGCTTATGGTAGT+AGG - chr5_4:6361197-6361216 None:intergenic 45.0%
CATTGTCATGATAGGCAGCT+TGG + chr5_4:6361448-6361467 Msa0833200:intron 45.0%
CACAAAGCAAAGCTGAAAGC+TGG + chr5_4:6361513-6361532 Msa0833200:intron 45.0%
CAGAAACAACACACTTCTGC+AGG + chr5_4:6362075-6362094 Msa0833200:intron 45.0%
GCACAGTTGTCGGAATCTTA+TGG - chr5_4:6362156-6362175 None:intergenic 45.0%
GAAGGGATAACTATCTGCAC+AGG - chr5_4:6362425-6362444 None:intergenic 45.0%
TCATCAACCATGTCCTATGG+AGG + chr5_4:6362447-6362466 Msa0833200:intron 45.0%
! CCTTCAATGGTCTTAGACAG+AGG - chr5_4:6362552-6362571 None:intergenic 45.0%
! CCTCTGTCTAAGACCATTGA+AGG + chr5_4:6362549-6362568 Msa0833200:intron 45.0%
ACAACCCTCTTCTTTCATCC+GGG - chr5_4:6362719-6362738 None:intergenic 45.0%
CACAACCCTCTTCTTTCATC+CGG - chr5_4:6362720-6362739 None:intergenic 45.0%
! AAGTTTTACGTTGGCCGTTG+AGG - chr5_4:6362748-6362767 None:intergenic 45.0%
! ACTAAGTTGGATCGGCTACA+TGG - chr5_4:6362820-6362839 None:intergenic 45.0%
ATGTAGCCGATCCAACTTAG+TGG + chr5_4:6362819-6362838 Msa0833200:intron 45.0%
TGTAGCCGATCCAACTTAGT+GGG + chr5_4:6362820-6362839 Msa0833200:intron 45.0%
CGATCCAACTTAGTGGGAAA+AGG + chr5_4:6362826-6362845 Msa0833200:intron 45.0%
!! GGTATTGGTAGCTCTTCAAG+CGG + chr5_4:6363108-6363127 Msa0833200:intron 45.0%
CAAGCGGCACTAACTGTTAT+AGG + chr5_4:6363124-6363143 Msa0833200:CDS 45.0%
!!! AATTTAAAATAAATGAAAAA+AGG - chr5_4:6363521-6363540 None:intergenic 5.0%
GGCAAAGACAGTGCATTGGA+TGG - chr5_4:6359396-6359415 None:intergenic 50.0%
AGTGGGCAAAGACAGTGCAT+TGG - chr5_4:6359400-6359419 None:intergenic 50.0%
ATGCACTGTCTTTGCCCACT+TGG + chr5_4:6359400-6359419 Msa0833200:CDS 50.0%
TGCACTGTCTTTGCCCACTT+GGG + chr5_4:6359401-6359420 Msa0833200:CDS 50.0%
GAGACATGAACAGCCCAAGT+GGG - chr5_4:6359417-6359436 None:intergenic 50.0%
ATGTCTCCAGCGTCGTTGAA+TGG + chr5_4:6359430-6359449 Msa0833200:CDS 50.0%
! GGCTTTGGTGTGGCAATATG+GGG + chr5_4:6359591-6359610 Msa0833200:CDS 50.0%
ATCTGGGCATGAAGCTTGGA+AGG + chr5_4:6359618-6359637 Msa0833200:CDS 50.0%
TCTGGGCATGAAGCTTGGAA+GGG + chr5_4:6359619-6359638 Msa0833200:CDS 50.0%
AAGCTTGGAAGGGTCTTTCC+TGG + chr5_4:6359629-6359648 Msa0833200:CDS 50.0%
AGCTTGGAAGGGTCTTTCCT+GGG + chr5_4:6359630-6359649 Msa0833200:CDS 50.0%
ACACCATGAATGGCTACGGA+AGG + chr5_4:6360792-6360811 Msa0833200:intron 50.0%
AGAAAAAGCAAAGCACGGGG+TGG + chr5_4:6361078-6361097 Msa0833200:intron 50.0%
GAAAAAGCAAAGCACGGGGT+GGG + chr5_4:6361079-6361098 Msa0833200:intron 50.0%
AAAAAGCAAAGCACGGGGTG+GGG + chr5_4:6361080-6361099 Msa0833200:intron 50.0%
CAAAATGAGGGCTCAGGTAG+AGG + chr5_4:6361131-6361150 Msa0833200:intron 50.0%
TGTCATGATAGGCAGCTTGG+TGG + chr5_4:6361451-6361470 Msa0833200:intron 50.0%
! ATAGGCAGCTTGGTGGATGT+TGG + chr5_4:6361458-6361477 Msa0833200:intron 50.0%
CAAAGCTGAAAGCTGGGCTT+TGG + chr5_4:6361520-6361539 Msa0833200:intron 50.0%
TCCAACCGCCTTTCACAACT+AGG - chr5_4:6361561-6361580 None:intergenic 50.0%
ATTGTTGCCATCACCAAGGC+CGG + chr5_4:6361630-6361649 Msa0833200:intron 50.0%
CTCTTCTTTCATCCGGGCTT+GGG - chr5_4:6362713-6362732 None:intergenic 50.0%
CAAGCCCGGATGAAAGAAGA+GGG + chr5_4:6362712-6362731 Msa0833200:intron 50.0%
AGGGTTGTGTTAGGCCTCAA+CGG + chr5_4:6362731-6362750 Msa0833200:intron 50.0%
! CAGGCCTTTTCCCACTAAGT+TGG - chr5_4:6362833-6362852 None:intergenic 50.0%
CAACTTAGTGGGAAAAGGCC+TGG + chr5_4:6362831-6362850 Msa0833200:intron 50.0%
CAATGTGCATAGCCGCATAC+CGG + chr5_4:6363155-6363174 Msa0833200:CDS 50.0%
GGAGACATGAACAGCCCAAG+TGG - chr5_4:6359418-6359437 None:intergenic 55.0%
GCTTGGAAGGGTCTTTCCTG+GGG + chr5_4:6359631-6359650 Msa0833200:CDS 55.0%
AAAAGCAAAGCACGGGGTGG+GGG + chr5_4:6361081-6361100 Msa0833200:intron 55.0%
GGTGGGGGCAGGATTGAATT+TGG + chr5_4:6361107-6361126 Msa0833200:intron 55.0%
! GCAGCTTGGTGGATGTTGGT+TGG + chr5_4:6361462-6361481 Msa0833200:intron 55.0%
GCCTAGTTGTGAAAGGCGGT+TGG + chr5_4:6361557-6361576 Msa0833200:intron 55.0%
CAAAAGGAGGAGAAACCGGC+CGG - chr5_4:6361652-6361671 None:intergenic 55.0%
CCTCTTCTTTCATCCGGGCT+TGG - chr5_4:6362714-6362733 None:intergenic 55.0%
CCAAGCCCGGATGAAAGAAG+AGG + chr5_4:6362711-6362730 Msa0833200:intron 55.0%
GAAGGGTCTTTCCTGGGGCA+TGG + chr5_4:6359636-6359655 Msa0833200:CDS 60.0%
AAAGCAAAGCACGGGGTGGG+GGG + chr5_4:6361082-6361101 Msa0833200:intron 60.0%
GGGACAGGCTACGCATAGCA+AGG - chr5_4:6362693-6362712 None:intergenic 60.0%
CTTTCATCCGGGCTTGGGAC+AGG - chr5_4:6362708-6362727 None:intergenic 60.0%
CAACGTGGCTGCAGCAGCCA+TGG - chr5_4:6359190-6359209 None:intergenic 65.0%
AAGCAAAGCACGGGGTGGGG+GGG + chr5_4:6361083-6361102 Msa0833200:intron 65.0%
TTGCCATCACCAAGGCCGGC+CGG + chr5_4:6361634-6361653 Msa0833200:intron 65.0%
AAACCGGCCGGCCTTGGTGA+TGG - chr5_4:6361640-6361659 None:intergenic 65.0%
TGCGTAGCCTGTCCCAAGCC+CGG + chr5_4:6362698-6362717 Msa0833200:intron 65.0%
AGCAAAGCACGGGGTGGGGG+GGG + chr5_4:6361084-6361103 Msa0833200:intron 70.0%
GAGGAGAAACCGGCCGGCCT+TGG - chr5_4:6361646-6361665 None:intergenic 70.0%
GCAAAGCACGGGGTGGGGGG+GGG + chr5_4:6361085-6361104 Msa0833200:intron 75.0%
CAAAGCACGGGGTGGGGGGG+GGG + chr5_4:6361086-6361105 Msa0833200:intron 75.0%
! AGCACGGGGTGGGGGGGGGG+TGG + chr5_4:6361089-6361108 Msa0833200:intron 85.0%
! GCACGGGGTGGGGGGGGGGT+GGG + chr5_4:6361090-6361109 Msa0833200:intron 85.0%
! CACGGGGTGGGGGGGGGGTG+GGG + chr5_4:6361091-6361110 Msa0833200:intron 85.0%
! ACGGGGTGGGGGGGGGGTGG+GGG + chr5_4:6361092-6361111 Msa0833200:intron 85.0%
! GGTGGGGGGGGGGTGGGGGC+AGG + chr5_4:6361096-6361115 Msa0833200:intron 90.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6359102 6363602 6359102 ID=Msa0833200;Name=Msa0833200
chr5_4 mRNA 6359102 6363602 6359102 ID=Msa0833200-mRNA-1;Parent=Msa0833200;Name=Msa0833200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|0.66|1|4|386|172
chr5_4 exon 6359102 6359451 6359102 ID=Msa0833200-mRNA-1:exon:2739;Parent=Msa0833200-mRNA-1
chr5_4 exon 6359579 6359657 6359579 ID=Msa0833200-mRNA-1:exon:2740;Parent=Msa0833200-mRNA-1
chr5_4 exon 6360596 6360664 6360596 ID=Msa0833200-mRNA-1:exon:2741;Parent=Msa0833200-mRNA-1
chr5_4 exon 6363109 6363602 6363109 ID=Msa0833200-mRNA-1:exon:2742;Parent=Msa0833200-mRNA-1
chr5_4 five_prime_UTR 6359102 6359188 6359102 ID=Msa0833200-mRNA-1:five_prime_utr;Parent=Msa0833200-mRNA-1
chr5_4 CDS 6359189 6359451 6359189 ID=Msa0833200-mRNA-1:cds;Parent=Msa0833200-mRNA-1
chr5_4 CDS 6359579 6359657 6359579 ID=Msa0833200-mRNA-1:cds;Parent=Msa0833200-mRNA-1
chr5_4 CDS 6360596 6360664 6360596 ID=Msa0833200-mRNA-1:cds;Parent=Msa0833200-mRNA-1
chr5_4 CDS 6363109 6363216 6363109 ID=Msa0833200-mRNA-1:cds;Parent=Msa0833200-mRNA-1
chr5_4 three_prime_UTR 6363217 6363602 6363217 ID=Msa0833200-mRNA-1:three_prime_utr;Parent=Msa0833200-mRNA-1
Gene Sequence

>Msa0833200

ATGGCTGCTGCAGCCACGTTGTACTTAGCAAAACCATGTTGTTCTACTCCCAAAATCCCGTTTCCGTCAAATTCAAGAGTTTTCAATAACAGTAGCTATCGATTTGGAACCTTAAAACCGAAAGCTGGTCTATCCCACTTCCTCAACGTTGTAGAAACAACTTCCTCGTACATTCAACTTCCACTTCAACTTGAACTTCAAGAACCATCCAATGCACTGTCTTTGCCCACTTGGGCTGTTCATGTCTCCAGCGTCGTTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATATGGGGAGAAATCTGGGCATGAAGCTTGGAAGGGTCTTTCCTGGGGCATGGTACCTCTACTTGGTGGAGCATTTTGTGCATGCACATGGCATTTCTTTTATAACTCTGACTCCCTTGAGGTATTGGTAGCTCTTCAAGCGGCACTAACTGTTATAGGTAATATAACAATGTGCATAGCCGCATACCGGATATATAAATCATCCCGCGAAAGCTCTGAGAATATTTGA

Protein sequence

>Msa0833200

MAAAATLYLAKPCCSTPKIPFPSNSRVFNNSSYRFGTLKPKAGLSHFLNVVETTSSYIQLPLQLELQEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGHEAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTVIGNITMCIAAYRIYKSSRESSENI*