AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130060 MtrunA17_Chr7g0275091 92.982 171 5 3 2 170 3 168 9.51e-114 320
Msa1130060 MtrunA17_Chr8g0338561 33.537 164 82 5 6 167 8 146 5.52e-19 78.6
Msa1130060 MtrunA17_Chr7g0234391 30.682 176 83 9 4 170 6 151 4.20e-14 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130060 AT5G18310.2 34.463 177 82 5 5 167 11 167 3.24e-21 85.5
Msa1130060 AT5G18310.1 34.969 163 72 5 5 167 11 139 1.58e-20 82.8
Msa1130060 AT5G48500.1 32.164 171 92 6 3 165 9 163 4.34e-16 72.0
Msa1130060 AT5G18310.3 30.625 160 77 5 22 167 1 140 5.70e-11 57.8

Find 71 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAACTTACATCCATATT+TGG 0.155608 7_3:+82136699 None:intergenic
TTGATTTCCTTTATTCAATT+TGG 0.191566 7_3:-82135344 Msa1130060:three_prime_UTR
GTTTCAAAGTATTGAGTTAT+TGG 0.194110 7_3:+82136528 None:intergenic
TCTCATTCACCATAACATTT+TGG 0.210593 7_3:+82135933 None:intergenic
TTCTTGTTCATTTGCTTCCT+TGG 0.212136 7_3:+82135845 None:intergenic
TTGCATTCTTAAATTTAATT+TGG 0.223613 7_3:-82135369 Msa1130060:three_prime_UTR
AAATAGGTGGTGTGGGTTAA+AGG 0.229403 7_3:+82136949 None:intergenic
TATCCTTGTCTAAGGTTTCT+TGG 0.252675 7_3:-82136865 Msa1130060:five_prime_UTR
TGTTCCACCAATTGTCTCTA+TGG 0.262731 7_3:-82137149 Msa1130060:five_prime_UTR
TTTCACTTTACCACTTATAA+AGG 0.266645 7_3:+82137380 None:intergenic
AGATCTTCATCAACAGGTTT+TGG 0.271957 7_3:+82135785 None:intergenic
TTGATTTAAGAATCCAAATA+TGG 0.274014 7_3:-82136712 Msa1130060:exon
GGAATTAATATCCTTGTCTA+AGG 0.291001 7_3:-82136873 Msa1130060:five_prime_UTR
TAACTAGCAAGGTGAGAAAT+TGG 0.324683 7_3:+82137179 None:intergenic
AGTGGTCAAATACCAGCTTT+TGG 0.338641 7_3:-82136576 Msa1130060:CDS
ATGTGTAGGCAACAAGGAAT+AGG 0.352813 7_3:-82135967 Msa1130060:intron
ATCCTTGTCTAAGGTTTCTT+GGG 0.356743 7_3:-82136864 Msa1130060:five_prime_UTR
TTATAGAGATCTTCATCAAC+AGG 0.392468 7_3:+82135779 None:intergenic
GGGTTTCATTTCCAAGTGTC+TGG 0.396397 7_3:-82135604 Msa1130060:CDS
TTTATCTATAAATTCTGCTC+AGG 0.404094 7_3:-82136895 Msa1130060:five_prime_UTR
GGAAGTCTCGTTGGTTGTAA+TGG 0.406598 7_3:+82135806 None:intergenic
TTTACCACTTATAAAGGAAA+TGG 0.407130 7_3:+82137386 None:intergenic
ATTCGTTACAGTTCTTCATC+TGG 0.411701 7_3:-82136486 Msa1130060:CDS
GCACCGACCAAATTGAATAA+AGG 0.418258 7_3:+82135337 None:intergenic
GTGGTTGTTACCTTTCGAAC+TGG 0.453480 7_3:+82136387 None:intergenic
AAGGAAGTACCAAAATGTTA+TGG 0.457410 7_3:-82135942 Msa1130060:CDS
TAAAATTCCATAGAGACAAT+TGG 0.458838 7_3:+82137142 None:intergenic
AGCTACTTCGCACAACTAAG+AGG 0.477902 7_3:-82135745 Msa1130060:CDS
TTAGTTGTGCGAAGTAGCTC+AGG 0.482904 7_3:+82135749 None:intergenic
AATTGGTGAGGTAGTTGAGT+GGG 0.488381 7_3:+82137196 None:intergenic
AGAGTATGACCTATCTGAAA+AGG 0.494840 7_3:+82137307 None:intergenic
TTTGAAACTGCAAGACAAGC+TGG 0.494930 7_3:-82136513 Msa1130060:CDS
AACGCTAACGCATGTTGTGC+TGG 0.495224 7_3:-82135484 Msa1130060:three_prime_UTR
AGCAGCAGGCACCAGACACT+TGG 0.496535 7_3:+82135593 None:intergenic
AAATCCCAGTTTCCAAAAGC+TGG 0.500624 7_3:+82136564 None:intergenic
AGCAAAGTAAATAGGTGGTG+TGG 0.507212 7_3:+82136941 None:intergenic
AGGGAAAGTGTACGACGTAA+TGG 0.509693 7_3:-82135873 Msa1130060:CDS
TGTGTAGGCAACAAGGAATA+GGG 0.512863 7_3:-82135966 Msa1130060:intron
CTGCTGCTTGTGTTTCATGA+GGG 0.515777 7_3:-82135578 Msa1130060:exon
AGCATAGCATAGTGAAGTGT+GGG 0.523916 7_3:+82137257 None:intergenic
GGGGCCATTTCCTTTATAAG+TGG 0.525842 7_3:-82137390 Msa1130060:five_prime_UTR
TTATCTATAAATTCTGCTCA+GGG 0.527319 7_3:-82136894 Msa1130060:five_prime_UTR
GCAAAGTAAATAGGTGGTGT+GGG 0.529788 7_3:+82136942 None:intergenic
CCTGCTGCTTGTGTTTCATG+AGG 0.531196 7_3:-82135579 Msa1130060:exon
TTATAAGTGGTAAAGTGAAA+CGG 0.556213 7_3:-82137377 Msa1130060:five_prime_UTR
GTCTTAACATAACACATGCC+TGG 0.569162 7_3:-82137093 Msa1130060:five_prime_UTR
GTGAAGTGTGGGTGACAAGT+TGG 0.576469 7_3:+82137268 None:intergenic
AAGCATAGCATAGTGAAGTG+TGG 0.582160 7_3:+82137256 None:intergenic
CCTCATGAAACACAAGCAGC+AGG 0.582533 7_3:+82135579 None:intergenic
TATGAAGACAGAGAAAAGAA+AGG 0.595355 7_3:+82136980 None:intergenic
TAATAAGAAACCAGTTCGAA+AGG 0.596559 7_3:-82136397 Msa1130060:intron
GTTTCTATAATCAATCACTA+AGG 0.600084 7_3:-82135540 Msa1130060:three_prime_UTR
GCTGCACGAACATGAACGTA+AGG 0.605636 7_3:+82136453 None:intergenic
AATTCCATAGAGACAATTGG+TGG 0.608381 7_3:+82137145 None:intergenic
TTTGTTATGTGTAGGCAACA+AGG 0.611013 7_3:-82135973 Msa1130060:intron
AAGGAAGCAAATGAACAAGA+AGG 0.611603 7_3:-82135843 Msa1130060:CDS
TGAACATGAGAAAGCAGCAA+GGG 0.621624 7_3:-82135892 Msa1130060:CDS
GTTGTGCGAAGTAGCTCAGG+AGG 0.623117 7_3:+82135752 None:intergenic
TGATAGGAATGGAAGAGAAG+TGG 0.624220 7_3:-82136594 Msa1130060:intron
GCTACTTCGCACAACTAAGA+GGG 0.636297 7_3:-82135744 Msa1130060:intron
AGGCAACAAGGAATAGGGAA+AGG 0.648026 7_3:-82135961 Msa1130060:CDS
ATGAACATGAGAAAGCAGCA+AGG 0.652015 7_3:-82135893 Msa1130060:CDS
TTCCACACAGAGATTCATGA+GGG 0.652324 7_3:-82137410 Msa1130060:five_prime_UTR
TTCCCAAGAAACCTTAGACA+AGG 0.655191 7_3:+82136862 None:intergenic
ACGACGTAATGGAACATCCA+AGG 0.662179 7_3:-82135862 Msa1130060:CDS
ATTCCACACAGAGATTCATG+AGG 0.687240 7_3:-82137411 Msa1130060:five_prime_UTR
TTGTGCGAAGTAGCTCAGGA+GGG 0.688459 7_3:+82135753 None:intergenic
AGCAAGGTGAGAAATTGGTG+AGG 0.700064 7_3:+82137184 None:intergenic
GCCCCTCATGAATCTCTGTG+TGG 0.705399 7_3:+82137408 None:intergenic
TCCACACAGAGATTCATGAG+GGG 0.729718 7_3:-82137409 Msa1130060:five_prime_UTR
AAATTGGTGAGGTAGTTGAG+TGG 0.736563 7_3:+82137195 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTATTTACTAGT+GGG - chr7_3:82136813-82136832 Msa1130060:five_prime_UTR 10.0%
!!! TATTTTATTTATTTACTAGT+GGG - chr7_3:82136813-82136832 Msa1130060:five_prime_UTR 10.0%
!! AAAAAAGAAATAAAAAAGAC+AGG + chr7_3:82136043-82136062 None:intergenic 15.0%
!! CACTAGTAAATAAATAAAAT+AGG + chr7_3:82136814-82136833 None:intergenic 15.0%
!!! CTATTTTATTTATTTACTAG+TGG - chr7_3:82136812-82136831 Msa1130060:five_prime_UTR 15.0%
!!! AGTAGTACAAAAATAATTTT+TGG - chr7_3:82136841-82136860 Msa1130060:five_prime_UTR 15.0%
!! TTGCATTCTTAAATTTAATT+TGG - chr7_3:82137501-82137520 Msa1130060:five_prime_UTR 15.0%
!! AAAAAAGAAATAAAAAAGAC+AGG + chr7_3:82136043-82136062 None:intergenic 15.0%
!! CACTAGTAAATAAATAAAAT+AGG + chr7_3:82136814-82136833 None:intergenic 15.0%
!!! CTATTTTATTTATTTACTAG+TGG - chr7_3:82136812-82136831 Msa1130060:five_prime_UTR 15.0%
!!! AGTAGTACAAAAATAATTTT+TGG - chr7_3:82136841-82136860 Msa1130060:five_prime_UTR 15.0%
!! TTGCATTCTTAAATTTAATT+TGG - chr7_3:82137501-82137520 Msa1130060:five_prime_UTR 15.0%
!!! AGTTACAAAACTTTTTCAAT+GGG + chr7_3:82135427-82135446 None:intergenic 20.0%
!!! AAGTTACAAAACTTTTTCAA+TGG + chr7_3:82135428-82135447 None:intergenic 20.0%
!! AACAAAAATAATAACTAGCA+AGG + chr7_3:82135705-82135724 None:intergenic 20.0%
!! TGAAAAAAAGCAAAGTAAAT+AGG + chr7_3:82135940-82135959 None:intergenic 20.0%
!! TTGATTTAAGAATCCAAATA+TGG - chr7_3:82136158-82136177 Msa1130060:intron 20.0%
!! AATAAACTTACATCCATATT+TGG + chr7_3:82136174-82136193 None:intergenic 20.0%
!! AAGAACAAGAAAAAACAAAA+AGG + chr7_3:82136508-82136527 None:intergenic 20.0%
!! AAAGTTGTAAGGTTAAAATT+TGG + chr7_3:82136547-82136566 None:intergenic 20.0%
!!! GTACAAAAATAATTTTTGGT+TGG - chr7_3:82136845-82136864 Msa1130060:five_prime_UTR 20.0%
!!! TTATATGATTTGTTATGTGT+AGG - chr7_3:82136889-82136908 Msa1130060:five_prime_UTR 20.0%
!! ATTAACAACATTTCAAATCA+CGG + chr7_3:82137207-82137226 None:intergenic 20.0%
!!! ACTAAGGAAGTTTAATTTTT+TGG - chr7_3:82137346-82137365 Msa1130060:five_prime_UTR 20.0%
!! TTGATTTCCTTTATTCAATT+TGG - chr7_3:82137526-82137545 Msa1130060:five_prime_UTR 20.0%
!! TGATTTCCTTTATTCAATTT+GGG - chr7_3:82137527-82137546 Msa1130060:five_prime_UTR 20.0%
!!! AGTTACAAAACTTTTTCAAT+GGG + chr7_3:82135427-82135446 None:intergenic 20.0%
!!! AAGTTACAAAACTTTTTCAA+TGG + chr7_3:82135428-82135447 None:intergenic 20.0%
!! AACAAAAATAATAACTAGCA+AGG + chr7_3:82135705-82135724 None:intergenic 20.0%
!! TGAAAAAAAGCAAAGTAAAT+AGG + chr7_3:82135940-82135959 None:intergenic 20.0%
!! TTGATTTAAGAATCCAAATA+TGG - chr7_3:82136158-82136177 Msa1130060:intron 20.0%
!! AATAAACTTACATCCATATT+TGG + chr7_3:82136174-82136193 None:intergenic 20.0%
!! AAGAACAAGAAAAAACAAAA+AGG + chr7_3:82136508-82136527 None:intergenic 20.0%
!! AAAGTTGTAAGGTTAAAATT+TGG + chr7_3:82136547-82136566 None:intergenic 20.0%
!!! GTACAAAAATAATTTTTGGT+TGG - chr7_3:82136845-82136864 Msa1130060:five_prime_UTR 20.0%
!!! TTATATGATTTGTTATGTGT+AGG - chr7_3:82136889-82136908 Msa1130060:five_prime_UTR 20.0%
!! ATTAACAACATTTCAAATCA+CGG + chr7_3:82137207-82137226 None:intergenic 20.0%
!!! ACTAAGGAAGTTTAATTTTT+TGG - chr7_3:82137346-82137365 Msa1130060:five_prime_UTR 20.0%
!!! AAAACTTTTTCAATGGGAAA+GGG + chr7_3:82135421-82135440 None:intergenic 25.0%
! TTTACCACTTATAAAGGAAA+TGG + chr7_3:82135487-82135506 None:intergenic 25.0%
! TTTCACTTTACCACTTATAA+AGG + chr7_3:82135493-82135512 None:intergenic 25.0%
! TTATAAGTGGTAAAGTGAAA+CGG - chr7_3:82135493-82135512 Msa1130060:three_prime_UTR 25.0%
! TAAAATTCCATAGAGACAAT+TGG + chr7_3:82135731-82135750 None:intergenic 25.0%
!!! GGAATTTTAGTAGTAGTAAA+AGG - chr7_3:82135742-82135761 Msa1130060:intron 25.0%
! TATGAGAAGAACAACAAAAA+CGG + chr7_3:82135805-82135824 None:intergenic 25.0%
! AAAAAAGCAAAGTAAATAGG+TGG + chr7_3:82135937-82135956 None:intergenic 25.0%
! TTTATCTATAAATTCTGCTC+AGG - chr7_3:82135975-82135994 Msa1130060:intron 25.0%
! TTATCTATAAATTCTGCTCA+GGG - chr7_3:82135976-82135995 Msa1130060:intron 25.0%
! TTGTTGTGTCTTACAAAAAT+GGG + chr7_3:82136090-82136109 None:intergenic 25.0%
!! TTTGTTGTGTCTTACAAAAA+TGG + chr7_3:82136091-82136110 None:intergenic 25.0%
! AACAAAAACACTAGAAGAAA+CGG - chr7_3:82136105-82136124 Msa1130060:intron 25.0%
!!! TAATGTTTGTTGTTGTTGAT+AGG - chr7_3:82136260-82136279 Msa1130060:intron 25.0%
!!! GTTTCAAAGTATTGAGTTAT+TGG + chr7_3:82136345-82136364 None:intergenic 25.0%
! AACAAGAAAAAACAAAAAGG+TGG + chr7_3:82136505-82136524 None:intergenic 25.0%
! CAATGATTATGAAAGTTGTA+AGG + chr7_3:82136558-82136577 None:intergenic 25.0%
!! TGAGTTAGATTTTTCATTTG+AGG + chr7_3:82136590-82136609 None:intergenic 25.0%
!!! ACTATTTACTCTGAAATTTG+TGG - chr7_3:82136689-82136708 Msa1130060:intron 25.0%
! CATCACATTATTAACCATAT+GGG + chr7_3:82136754-82136773 None:intergenic 25.0%
! TTTGTGCAGAAAAAAATGTT+GGG - chr7_3:82137246-82137265 Msa1130060:five_prime_UTR 25.0%
! GTTTCTATAATCAATCACTA+AGG - chr7_3:82137330-82137349 Msa1130060:five_prime_UTR 25.0%
!!! AAAACTTTTTCAATGGGAAA+GGG + chr7_3:82135421-82135440 None:intergenic 25.0%
! TTTACCACTTATAAAGGAAA+TGG + chr7_3:82135487-82135506 None:intergenic 25.0%
! TTTCACTTTACCACTTATAA+AGG + chr7_3:82135493-82135512 None:intergenic 25.0%
! TTATAAGTGGTAAAGTGAAA+CGG - chr7_3:82135493-82135512 Msa1130060:three_prime_UTR 25.0%
! TAAAATTCCATAGAGACAAT+TGG + chr7_3:82135731-82135750 None:intergenic 25.0%
!!! GGAATTTTAGTAGTAGTAAA+AGG - chr7_3:82135742-82135761 Msa1130060:intron 25.0%
! TATGAGAAGAACAACAAAAA+CGG + chr7_3:82135805-82135824 None:intergenic 25.0%
! AAAAAAGCAAAGTAAATAGG+TGG + chr7_3:82135937-82135956 None:intergenic 25.0%
! TTTATCTATAAATTCTGCTC+AGG - chr7_3:82135975-82135994 Msa1130060:intron 25.0%
! TTATCTATAAATTCTGCTCA+GGG - chr7_3:82135976-82135995 Msa1130060:intron 25.0%
! TTGTTGTGTCTTACAAAAAT+GGG + chr7_3:82136090-82136109 None:intergenic 25.0%
!! TTTGTTGTGTCTTACAAAAA+TGG + chr7_3:82136091-82136110 None:intergenic 25.0%
! AACAAAAACACTAGAAGAAA+CGG - chr7_3:82136105-82136124 Msa1130060:intron 25.0%
!!! TAATGTTTGTTGTTGTTGAT+AGG - chr7_3:82136260-82136279 Msa1130060:intron 25.0%
!!! GTTTCAAAGTATTGAGTTAT+TGG + chr7_3:82136345-82136364 None:intergenic 25.0%
! AACAAGAAAAAACAAAAAGG+TGG + chr7_3:82136505-82136524 None:intergenic 25.0%
! CAATGATTATGAAAGTTGTA+AGG + chr7_3:82136558-82136577 None:intergenic 25.0%
!! TGAGTTAGATTTTTCATTTG+AGG + chr7_3:82136590-82136609 None:intergenic 25.0%
!!! ACTATTTACTCTGAAATTTG+TGG - chr7_3:82136689-82136708 Msa1130060:intron 25.0%
! CATCACATTATTAACCATAT+GGG + chr7_3:82136754-82136773 None:intergenic 25.0%
! TTTGTGCAGAAAAAAATGTT+GGG - chr7_3:82137246-82137265 Msa1130060:five_prime_UTR 25.0%
! GTTTCTATAATCAATCACTA+AGG - chr7_3:82137330-82137349 Msa1130060:five_prime_UTR 25.0%
!!! CAAAACTTTTTCAATGGGAA+AGG + chr7_3:82135422-82135441 None:intergenic 30.0%
ATGAGAAGAACAACAAAAAC+GGG + chr7_3:82135804-82135823 None:intergenic 30.0%
AGAAGAGAAAAACAGAATCA+GGG + chr7_3:82135838-82135857 None:intergenic 30.0%
TATGAAGACAGAGAAAAGAA+AGG + chr7_3:82135893-82135912 None:intergenic 30.0%
GGAATTAATATCCTTGTCTA+AGG - chr7_3:82135997-82136016 Msa1130060:intron 30.0%
ATAAAAAAGACAGGAAGATG+TGG + chr7_3:82136034-82136053 None:intergenic 30.0%
!! TTTGTTGTTGTTGATAGGAA+TGG - chr7_3:82136265-82136284 Msa1130060:intron 30.0%
TAATAAGAAACCAGTTCGAA+AGG - chr7_3:82136473-82136492 Msa1130060:CDS 30.0%
CCATCACATTATTAACCATA+TGG + chr7_3:82136755-82136774 None:intergenic 30.0%
CCATATGGTTAATAATGTGA+TGG - chr7_3:82136752-82136771 Msa1130060:five_prime_UTR 30.0%
AATAATGTGATGGTTGAGAA+AGG - chr7_3:82136762-82136781 Msa1130060:five_prime_UTR 30.0%
!! AAGGAAGTACCAAAATGTTA+TGG - chr7_3:82136928-82136947 Msa1130060:five_prime_UTR 30.0%
! TCTCATTCACCATAACATTT+TGG + chr7_3:82136940-82136959 None:intergenic 30.0%
TTATAGAGATCTTCATCAAC+AGG + chr7_3:82137094-82137113 None:intergenic 30.0%
GTTTGTGCAGAAAAAAATGT+TGG - chr7_3:82137245-82137264 Msa1130060:five_prime_UTR 30.0%
!!! CAAAACTTTTTCAATGGGAA+AGG + chr7_3:82135422-82135441 None:intergenic 30.0%
ATGAGAAGAACAACAAAAAC+GGG + chr7_3:82135804-82135823 None:intergenic 30.0%
AGAAGAGAAAAACAGAATCA+GGG + chr7_3:82135838-82135857 None:intergenic 30.0%
TATGAAGACAGAGAAAAGAA+AGG + chr7_3:82135893-82135912 None:intergenic 30.0%
GGAATTAATATCCTTGTCTA+AGG - chr7_3:82135997-82136016 Msa1130060:intron 30.0%
ATAAAAAAGACAGGAAGATG+TGG + chr7_3:82136034-82136053 None:intergenic 30.0%
!! TTTGTTGTTGTTGATAGGAA+TGG - chr7_3:82136265-82136284 Msa1130060:intron 30.0%
TAATAAGAAACCAGTTCGAA+AGG - chr7_3:82136473-82136492 Msa1130060:CDS 30.0%
CCATCACATTATTAACCATA+TGG + chr7_3:82136755-82136774 None:intergenic 30.0%
CCATATGGTTAATAATGTGA+TGG - chr7_3:82136752-82136771 Msa1130060:five_prime_UTR 30.0%
AATAATGTGATGGTTGAGAA+AGG - chr7_3:82136762-82136781 Msa1130060:five_prime_UTR 30.0%
!! AAGGAAGTACCAAAATGTTA+TGG - chr7_3:82136928-82136947 Msa1130060:five_prime_UTR 30.0%
! TCTCATTCACCATAACATTT+TGG + chr7_3:82136940-82136959 None:intergenic 30.0%
TTATAGAGATCTTCATCAAC+AGG + chr7_3:82137094-82137113 None:intergenic 30.0%
GTTTGTGCAGAAAAAAATGT+TGG - chr7_3:82137245-82137264 Msa1130060:five_prime_UTR 30.0%
!!! TCATGTTTTTTCGAGCATAC+TGG + chr7_3:82135367-82135386 None:intergenic 35.0%
! CATTCTAAGCCTTTTCAGAT+AGG - chr7_3:82135554-82135573 Msa1130060:three_prime_UTR 35.0%
AGAGTATGACCTATCTGAAA+AGG + chr7_3:82135566-82135585 None:intergenic 35.0%
TAACTAGCAAGGTGAGAAAT+TGG + chr7_3:82135694-82135713 None:intergenic 35.0%
AATTCCATAGAGACAATTGG+TGG + chr7_3:82135728-82135747 None:intergenic 35.0%
CAGAAGAGAAAAACAGAATC+AGG + chr7_3:82135839-82135858 None:intergenic 35.0%
! TATCCTTGTCTAAGGTTTCT+TGG - chr7_3:82136005-82136024 Msa1130060:intron 35.0%
! ATCCTTGTCTAAGGTTTCTT+GGG - chr7_3:82136006-82136025 Msa1130060:intron 35.0%
! TGGGGTTGAGAACTTTTTAA+AGG + chr7_3:82136067-82136086 None:intergenic 35.0%
TGTGTCTTACAAAAATGGGT+GGG + chr7_3:82136086-82136105 None:intergenic 35.0%
TTGTGTCTTACAAAAATGGG+TGG + chr7_3:82136087-82136106 None:intergenic 35.0%
!! AAATACCAGCTTTTGGAAAC+TGG - chr7_3:82136301-82136320 Msa1130060:intron 35.0%
!! AATACCAGCTTTTGGAAACT+GGG - chr7_3:82136302-82136321 Msa1130060:intron 35.0%
ATTCGTTACAGTTCTTCATC+TGG - chr7_3:82136384-82136403 Msa1130060:intron 35.0%
! TTTGTTATGTGTAGGCAACA+AGG - chr7_3:82136897-82136916 Msa1130060:five_prime_UTR 35.0%
TTCTTGTTCATTTGCTTCCT+TGG + chr7_3:82137028-82137047 None:intergenic 35.0%
AAGGAAGCAAATGAACAAGA+AGG - chr7_3:82137027-82137046 Msa1130060:five_prime_UTR 35.0%
! AGATCTTCATCAACAGGTTT+TGG + chr7_3:82137088-82137107 None:intergenic 35.0%
!!! TCATGTTTTTTCGAGCATAC+TGG + chr7_3:82135367-82135386 None:intergenic 35.0%
! CATTCTAAGCCTTTTCAGAT+AGG - chr7_3:82135554-82135573 Msa1130060:three_prime_UTR 35.0%
AGAGTATGACCTATCTGAAA+AGG + chr7_3:82135566-82135585 None:intergenic 35.0%
TAACTAGCAAGGTGAGAAAT+TGG + chr7_3:82135694-82135713 None:intergenic 35.0%
AATTCCATAGAGACAATTGG+TGG + chr7_3:82135728-82135747 None:intergenic 35.0%
CAGAAGAGAAAAACAGAATC+AGG + chr7_3:82135839-82135858 None:intergenic 35.0%
! TATCCTTGTCTAAGGTTTCT+TGG - chr7_3:82136005-82136024 Msa1130060:intron 35.0%
! ATCCTTGTCTAAGGTTTCTT+GGG - chr7_3:82136006-82136025 Msa1130060:intron 35.0%
! TGGGGTTGAGAACTTTTTAA+AGG + chr7_3:82136067-82136086 None:intergenic 35.0%
TGTGTCTTACAAAAATGGGT+GGG + chr7_3:82136086-82136105 None:intergenic 35.0%
TTGTGTCTTACAAAAATGGG+TGG + chr7_3:82136087-82136106 None:intergenic 35.0%
!! AAATACCAGCTTTTGGAAAC+TGG - chr7_3:82136301-82136320 Msa1130060:intron 35.0%
!! AATACCAGCTTTTGGAAACT+GGG - chr7_3:82136302-82136321 Msa1130060:intron 35.0%
ATTCGTTACAGTTCTTCATC+TGG - chr7_3:82136384-82136403 Msa1130060:intron 35.0%
! TTTGTTATGTGTAGGCAACA+AGG - chr7_3:82136897-82136916 Msa1130060:five_prime_UTR 35.0%
TTCTTGTTCATTTGCTTCCT+TGG + chr7_3:82137028-82137047 None:intergenic 35.0%
AAGGAAGCAAATGAACAAGA+AGG - chr7_3:82137027-82137046 Msa1130060:five_prime_UTR 35.0%
! AGATCTTCATCAACAGGTTT+TGG + chr7_3:82137088-82137107 None:intergenic 35.0%
ATTCCACACAGAGATTCATG+AGG - chr7_3:82135459-82135478 Msa1130060:three_prime_UTR 40.0%
TTCCACACAGAGATTCATGA+GGG - chr7_3:82135460-82135479 Msa1130060:three_prime_UTR 40.0%
AGCATAGCATAGTGAAGTGT+GGG + chr7_3:82135616-82135635 None:intergenic 40.0%
AAGCATAGCATAGTGAAGTG+TGG + chr7_3:82135617-82135636 None:intergenic 40.0%
AATTGGTGAGGTAGTTGAGT+GGG + chr7_3:82135677-82135696 None:intergenic 40.0%
AAATTGGTGAGGTAGTTGAG+TGG + chr7_3:82135678-82135697 None:intergenic 40.0%
TGTTCCACCAATTGTCTCTA+TGG - chr7_3:82135721-82135740 Msa1130060:intron 40.0%
GTCTTAACATAACACATGCC+TGG - chr7_3:82135777-82135796 Msa1130060:CDS 40.0%
! AAATAGGTGGTGTGGGTTAA+AGG + chr7_3:82135924-82135943 None:intergenic 40.0%
GCAAAGTAAATAGGTGGTGT+GGG + chr7_3:82135931-82135950 None:intergenic 40.0%
AGCAAAGTAAATAGGTGGTG+TGG + chr7_3:82135932-82135951 None:intergenic 40.0%
TTCCCAAGAAACCTTAGACA+AGG + chr7_3:82136011-82136030 None:intergenic 40.0%
GTGTCTTACAAAAATGGGTG+GGG + chr7_3:82136085-82136104 None:intergenic 40.0%
TGATAGGAATGGAAGAGAAG+TGG - chr7_3:82136276-82136295 Msa1130060:intron 40.0%
! AGTGGTCAAATACCAGCTTT+TGG - chr7_3:82136294-82136313 Msa1130060:intron 40.0%
AAATCCCAGTTTCCAAAAGC+TGG + chr7_3:82136309-82136328 None:intergenic 40.0%
! TTTGAAACTGCAAGACAAGC+TGG - chr7_3:82136357-82136376 Msa1130060:intron 40.0%
ATGTGTAGGCAACAAGGAAT+AGG - chr7_3:82136903-82136922 Msa1130060:five_prime_UTR 40.0%
TGTGTAGGCAACAAGGAATA+GGG - chr7_3:82136904-82136923 Msa1130060:five_prime_UTR 40.0%
ATGAACATGAGAAAGCAGCA+AGG - chr7_3:82136977-82136996 Msa1130060:five_prime_UTR 40.0%
TGAACATGAGAAAGCAGCAA+GGG - chr7_3:82136978-82136997 Msa1130060:five_prime_UTR 40.0%
ATTCCACACAGAGATTCATG+AGG - chr7_3:82135459-82135478 Msa1130060:three_prime_UTR 40.0%
TTCCACACAGAGATTCATGA+GGG - chr7_3:82135460-82135479 Msa1130060:three_prime_UTR 40.0%
AGCATAGCATAGTGAAGTGT+GGG + chr7_3:82135616-82135635 None:intergenic 40.0%
AAGCATAGCATAGTGAAGTG+TGG + chr7_3:82135617-82135636 None:intergenic 40.0%
AATTGGTGAGGTAGTTGAGT+GGG + chr7_3:82135677-82135696 None:intergenic 40.0%
AAATTGGTGAGGTAGTTGAG+TGG + chr7_3:82135678-82135697 None:intergenic 40.0%
TGTTCCACCAATTGTCTCTA+TGG - chr7_3:82135721-82135740 Msa1130060:intron 40.0%
GTCTTAACATAACACATGCC+TGG - chr7_3:82135777-82135796 Msa1130060:CDS 40.0%
! AAATAGGTGGTGTGGGTTAA+AGG + chr7_3:82135924-82135943 None:intergenic 40.0%
GCAAAGTAAATAGGTGGTGT+GGG + chr7_3:82135931-82135950 None:intergenic 40.0%
AGCAAAGTAAATAGGTGGTG+TGG + chr7_3:82135932-82135951 None:intergenic 40.0%
TTCCCAAGAAACCTTAGACA+AGG + chr7_3:82136011-82136030 None:intergenic 40.0%
GTGTCTTACAAAAATGGGTG+GGG + chr7_3:82136085-82136104 None:intergenic 40.0%
TGATAGGAATGGAAGAGAAG+TGG - chr7_3:82136276-82136295 Msa1130060:intron 40.0%
! AGTGGTCAAATACCAGCTTT+TGG - chr7_3:82136294-82136313 Msa1130060:intron 40.0%
AAATCCCAGTTTCCAAAAGC+TGG + chr7_3:82136309-82136328 None:intergenic 40.0%
! TTTGAAACTGCAAGACAAGC+TGG - chr7_3:82136357-82136376 Msa1130060:intron 40.0%
ATGTGTAGGCAACAAGGAAT+AGG - chr7_3:82136903-82136922 Msa1130060:five_prime_UTR 40.0%
TGTGTAGGCAACAAGGAATA+GGG - chr7_3:82136904-82136923 Msa1130060:five_prime_UTR 40.0%
ATGAACATGAGAAAGCAGCA+AGG - chr7_3:82136977-82136996 Msa1130060:five_prime_UTR 40.0%
TGAACATGAGAAAGCAGCAA+GGG - chr7_3:82136978-82136997 Msa1130060:five_prime_UTR 40.0%
TCCACACAGAGATTCATGAG+GGG - chr7_3:82135461-82135480 Msa1130060:three_prime_UTR 45.0%
GGGGCCATTTCCTTTATAAG+TGG - chr7_3:82135480-82135499 Msa1130060:three_prime_UTR 45.0%
AGCAAGGTGAGAAATTGGTG+AGG + chr7_3:82135689-82135708 None:intergenic 45.0%
AGAACAACAAAAACGGGACC+AGG + chr7_3:82135798-82135817 None:intergenic 45.0%
GTGGTTGTTACCTTTCGAAC+TGG + chr7_3:82136486-82136505 None:intergenic 45.0%
ACGAGTCATGATGACCCATA+TGG - chr7_3:82136737-82136756 Msa1130060:five_prime_UTR 45.0%
AGGCAACAAGGAATAGGGAA+AGG - chr7_3:82136909-82136928 Msa1130060:five_prime_UTR 45.0%
! AGGGAAAGTGTACGACGTAA+TGG - chr7_3:82136997-82137016 Msa1130060:five_prime_UTR 45.0%
! ACGACGTAATGGAACATCCA+AGG - chr7_3:82137008-82137027 Msa1130060:five_prime_UTR 45.0%
! GGAAGTCTCGTTGGTTGTAA+TGG + chr7_3:82137067-82137086 None:intergenic 45.0%
!!! ACAGGTTTTGGAAGTCTCGT+TGG + chr7_3:82137076-82137095 None:intergenic 45.0%
TTAGTTGTGCGAAGTAGCTC+AGG + chr7_3:82137124-82137143 None:intergenic 45.0%
AGCTACTTCGCACAACTAAG+AGG - chr7_3:82137125-82137144 Msa1130060:five_prime_UTR 45.0%
GCTACTTCGCACAACTAAGA+GGG - chr7_3:82137126-82137145 Msa1130060:five_prime_UTR 45.0%
GGGTTTCATTTCCAAGTGTC+TGG - chr7_3:82137266-82137285 Msa1130060:five_prime_UTR 45.0%
! CTGCTGCTTGTGTTTCATGA+GGG - chr7_3:82137292-82137311 Msa1130060:five_prime_UTR 45.0%
TCCACACAGAGATTCATGAG+GGG - chr7_3:82135461-82135480 Msa1130060:three_prime_UTR 45.0%
GGGGCCATTTCCTTTATAAG+TGG - chr7_3:82135480-82135499 Msa1130060:three_prime_UTR 45.0%
AGCAAGGTGAGAAATTGGTG+AGG + chr7_3:82135689-82135708 None:intergenic 45.0%
AGAACAACAAAAACGGGACC+AGG + chr7_3:82135798-82135817 None:intergenic 45.0%
GTGGTTGTTACCTTTCGAAC+TGG + chr7_3:82136486-82136505 None:intergenic 45.0%
ACGAGTCATGATGACCCATA+TGG - chr7_3:82136737-82136756 Msa1130060:five_prime_UTR 45.0%
AGGCAACAAGGAATAGGGAA+AGG - chr7_3:82136909-82136928 Msa1130060:five_prime_UTR 45.0%
! AGGGAAAGTGTACGACGTAA+TGG - chr7_3:82136997-82137016 Msa1130060:five_prime_UTR 45.0%
! ACGACGTAATGGAACATCCA+AGG - chr7_3:82137008-82137027 Msa1130060:five_prime_UTR 45.0%
! GGAAGTCTCGTTGGTTGTAA+TGG + chr7_3:82137067-82137086 None:intergenic 45.0%
!!! ACAGGTTTTGGAAGTCTCGT+TGG + chr7_3:82137076-82137095 None:intergenic 45.0%
TTAGTTGTGCGAAGTAGCTC+AGG + chr7_3:82137124-82137143 None:intergenic 45.0%
AGCTACTTCGCACAACTAAG+AGG - chr7_3:82137125-82137144 Msa1130060:five_prime_UTR 45.0%
GCTACTTCGCACAACTAAGA+GGG - chr7_3:82137126-82137145 Msa1130060:five_prime_UTR 45.0%
GGGTTTCATTTCCAAGTGTC+TGG - chr7_3:82137266-82137285 Msa1130060:five_prime_UTR 45.0%
! CTGCTGCTTGTGTTTCATGA+GGG - chr7_3:82137292-82137311 Msa1130060:five_prime_UTR 45.0%
!!! TTTTATTTATTTCATATTTA+TGG + chr7_3:82135393-82135412 None:intergenic 5.0%
!!! TTTTATTTATTTCATATTTA+TGG + chr7_3:82135393-82135412 None:intergenic 5.0%
GTGAAGTGTGGGTGACAAGT+TGG + chr7_3:82135605-82135624 None:intergenic 50.0%
GCTGCACGAACATGAACGTA+AGG + chr7_3:82136420-82136439 None:intergenic 50.0%
TTGTGCGAAGTAGCTCAGGA+GGG + chr7_3:82137120-82137139 None:intergenic 50.0%
CTTCGCACAACTAAGAGGGT+TGG - chr7_3:82137130-82137149 Msa1130060:five_prime_UTR 50.0%
CCTCATGAAACACAAGCAGC+AGG + chr7_3:82137294-82137313 None:intergenic 50.0%
! CCTGCTGCTTGTGTTTCATG+AGG - chr7_3:82137291-82137310 Msa1130060:five_prime_UTR 50.0%
AACGCTAACGCATGTTGTGC+TGG - chr7_3:82137386-82137405 Msa1130060:five_prime_UTR 50.0%
GTGAAGTGTGGGTGACAAGT+TGG + chr7_3:82135605-82135624 None:intergenic 50.0%
GCTGCACGAACATGAACGTA+AGG + chr7_3:82136420-82136439 None:intergenic 50.0%
TTGTGCGAAGTAGCTCAGGA+GGG + chr7_3:82137120-82137139 None:intergenic 50.0%
CTTCGCACAACTAAGAGGGT+TGG - chr7_3:82137130-82137149 Msa1130060:five_prime_UTR 50.0%
CCTCATGAAACACAAGCAGC+AGG + chr7_3:82137294-82137313 None:intergenic 50.0%
! CCTGCTGCTTGTGTTTCATG+AGG - chr7_3:82137291-82137310 Msa1130060:five_prime_UTR 50.0%
AACGCTAACGCATGTTGTGC+TGG - chr7_3:82137386-82137405 Msa1130060:five_prime_UTR 50.0%
GCCCCTCATGAATCTCTGTG+TGG + chr7_3:82135465-82135484 None:intergenic 55.0%
GTTGTGCGAAGTAGCTCAGG+AGG + chr7_3:82137121-82137140 None:intergenic 55.0%
GCCCCTCATGAATCTCTGTG+TGG + chr7_3:82135465-82135484 None:intergenic 55.0%
GTTGTGCGAAGTAGCTCAGG+AGG + chr7_3:82137121-82137140 None:intergenic 55.0%
AGCAGCAGGCACCAGACACT+TGG + chr7_3:82137280-82137299 None:intergenic 60.0%
AGCAGCAGGCACCAGACACT+TGG + chr7_3:82137280-82137299 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82135344 82137548 82135344 ID=Msa1130060;Name=Msa1130060
chr7_3 mRNA 82135344 82137548 82135344 ID=Msa1130060-mRNA-1;Parent=Msa1130060;Name=Msa1130060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=833|1|1|1|1|1|4|237|170
chr7_3 exon 82135344 82135637 82135344 ID=Msa1130060-mRNA-1:exon:24140;Parent=Msa1130060-mRNA-1
chr7_3 exon 82135745 82135981 82135745 ID=Msa1130060-mRNA-1:exon:24139;Parent=Msa1130060-mRNA-1
chr7_3 exon 82136398 82136610 82136398 ID=Msa1130060-mRNA-1:exon:24138;Parent=Msa1130060-mRNA-1
chr7_3 exon 82136710 82137548 82136710 ID=Msa1130060-mRNA-1:exon:24137;Parent=Msa1130060-mRNA-1
chr7_3 five_prime_UTR 82136716 82137548 82136716 ID=Msa1130060-mRNA-1:five_prime_utr;Parent=Msa1130060-mRNA-1
chr7_3 CDS 82136710 82136715 82136710 ID=Msa1130060-mRNA-1:cds;Parent=Msa1130060-mRNA-1
chr7_3 CDS 82136398 82136610 82136398 ID=Msa1130060-mRNA-1:cds;Parent=Msa1130060-mRNA-1
chr7_3 CDS 82135745 82135981 82135745 ID=Msa1130060-mRNA-1:cds;Parent=Msa1130060-mRNA-1
chr7_3 CDS 82135581 82135637 82135581 ID=Msa1130060-mRNA-1:cds;Parent=Msa1130060-mRNA-1
chr7_3 three_prime_UTR 82135344 82135580 82135344 ID=Msa1130060-mRNA-1:three_prime_utr;Parent=Msa1130060-mRNA-1
Gene Sequence

>Msa1130060

ATGGATGAATGGAAGAGAAGTGGTCAAATACCAGCTTTTGGAAACTGGGATTTTGCAAATGAGTTACCAATAACTCAATACTTTGAAACTGCAAGACAAGCTGGTTTGATTCGTTACAGTTCTTCATCTGGTGAAAGTGATCCTTACGTTCATGTTCGTGCAGCAGAACATGATCTTTATGCTGTTTCTGTTGATTATAATAAGAAACCAGTTCGAAAGGCAACAAGGAATAGGGAAAGGAAGTACCAAAATGTTATGGTGAATGAGAAAGAAACAACAATGAACATGAACATGAGAAAGCAGCAAGGGAAAGTGTACGACGTAATGGAACATCCAAGGAAGCAAATGAACAAGAAGGTACATGTTAGTGCTCCATTACAACCAACGAGACTTCCAAAACCTGTTGATGAAGATCTCTATAAGATCCCTCCTGAGCTACTTCGCACAACTAAGAGGAAAAAAATGTTGGGTTTCATTTCCAAGTGTCTGGTGCCTGCTGCTTGTGTTTCATGA

Protein sequence

>Msa1130060

MDEWKRSGQIPAFGNWDFANELPITQYFETARQAGLIRYSSSSGESDPYVHVRAAEHDLYAVSVDYNKKPVRKATRNRERKYQNVMVNEKETTMNMNMRKQQGKVYDVMEHPRKQMNKKVHVSAPLQPTRLPKPVDEDLYKIPPELLRTTKRKKMLGFISKCLVPAACVS*