AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753590 MtrunA17_Chr5g0398491 95.930 172 7 0 1 172 1 172 3.14e-121 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753590 AT4G22830.1 81.905 105 19 0 63 167 82 186 1.51e-60 186
Msa0753590 AT4G22830.2 82.692 104 18 0 64 167 91 194 4.16e-60 186

Find 63 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCCTTCTTCATATAAA+AGG 0.122173 5_2:-7226656 None:intergenic
ATTTGACGGAAACGGGATTT+TGG 0.159414 5_2:-7222307 None:intergenic
ATGGCTTTGGTGTGGCAATA+TGG 0.236845 5_2:+7222658 Msa0753590:CDS
CAAGCGGCACTAACTGTTAT+AGG 0.288834 5_2:+7226191 Msa0753590:CDS
CTCTTGAATTTGACGGAAAC+GGG 0.296168 5_2:-7222314 None:intergenic
TGGCAATATGGGGAGAAATC+TGG 0.321722 5_2:+7222670 Msa0753590:CDS
AAGCTTGGAAGGGTCTTTCC+TGG 0.322451 5_2:+7222698 Msa0753590:CDS
TTAATCTAATATTGCAAGTT+GGG 0.340380 5_2:-7222172 None:intergenic
TGGCTTTGGTGTGGCAATAT+GGG 0.345301 5_2:+7222659 Msa0753590:CDS
AATAACAGTAGCTATCGATT+TGG 0.348207 5_2:+7222342 Msa0753590:CDS
CGCGGGATGATTTATATATC+CGG 0.376834 5_2:-7226241 None:intergenic
ATGCACTGTCTTTGCCCACT+TGG 0.377337 5_2:+7222469 Msa0753590:CDS
TTGTAAATCAGTAAAAGATT+AGG 0.381733 5_2:-7226334 None:intergenic
ACTCTTGAATTTGACGGAAA+CGG 0.400641 5_2:-7222315 None:intergenic
TGATCTTATCTGTGTAACTT+TGG 0.404034 5_2:+7226421 Msa0753590:three_prime_UTR
TTGAAAACTCTTGAATTTGA+CGG 0.404161 5_2:-7222321 None:intergenic
TTTAATCTAATATTGCAAGT+TGG 0.423227 5_2:-7222173 None:intergenic
AAGGATTATAGCTATGGCTT+TGG 0.426099 5_2:+7222645 Msa0753590:intron
AGCTTGGAAGGGTCTTTCCT+GGG 0.439797 5_2:+7222699 Msa0753590:CDS
AAGTGGGATAGACCAGCTTT+CGG 0.451603 5_2:-7222375 None:intergenic
GGCAATATGGGGAGAAATCT+GGG 0.453113 5_2:+7222671 Msa0753590:CDS
TGCACTGTCTTTGCCCACTT+GGG 0.453403 5_2:+7222470 Msa0753590:CDS
TTTGCCTTCTTCATATAAAA+GGG 0.458042 5_2:-7226655 None:intergenic
GAAGGGTCTTTCCTGGGGCA+TGG 0.465621 5_2:+7222705 Msa0753590:CDS
TTGACATTGACAAATAATAC+AGG 0.469573 5_2:-7226521 None:intergenic
TTTCTACAACGTTGAGGAAG+TGG 0.473835 5_2:-7222392 None:intergenic
TTGTTGTAGGTACCTCTACT+TGG 0.477528 5_2:+7223656 Msa0753590:intron
AGAAATCTGGGCATGAAGCT+TGG 0.487427 5_2:+7222683 Msa0753590:CDS
TTAATGTATCAGTATGCAGT+TGG 0.496794 5_2:-7226487 None:intergenic
CAAAATTATTCAGTGACAGA+TGG 0.507531 5_2:+7226354 Msa0753590:three_prime_UTR
TTGTAGGTACCTCTACTTGG+TGG 0.514763 5_2:+7223659 Msa0753590:intron
ATGTCTCCAGCGTCGTTGAA+TGG 0.515806 5_2:+7222499 Msa0753590:CDS
ATCTGGGCATGAAGCTTGGA+AGG 0.518052 5_2:+7222687 Msa0753590:CDS
CAACGTAGCTGCAGCAGCCA+TGG 0.520101 5_2:-7222256 None:intergenic
TAATCTAATATTGCAAGTTG+GGG 0.530020 5_2:-7222171 None:intergenic
AATATTCTCAGAGCTTTCGC+GGG 0.537497 5_2:-7226258 None:intergenic
GGAACCTTAAAACCGAAAGC+TGG 0.539599 5_2:+7222363 Msa0753590:CDS
AAATATTCTCAGAGCTTTCG+CGG 0.544529 5_2:-7226259 None:intergenic
TCTTGAAGTTCAAGTTGAAG+TGG 0.545704 5_2:-7222438 None:intergenic
TAAGATCAAAAGCAACATCA+AGG 0.554859 5_2:-7226406 None:intergenic
CAATGTGCATAGCCGCATAC+CGG 0.555634 5_2:+7226222 Msa0753590:CDS
GCTTGGAAGGGTCTTTCCTG+GGG 0.562740 5_2:+7222700 Msa0753590:CDS
TTGACAAATAATACAGGGAA+AGG 0.566224 5_2:-7226515 None:intergenic
TTCTACAACGTTGAGGAAGT+GGG 0.570080 5_2:-7222391 None:intergenic
TATGCAGTTGGATTCTCTAG+TGG 0.587306 5_2:-7226475 None:intergenic
GGCTTTGGTGTGGCAATATG+GGG 0.589415 5_2:+7222660 Msa0753590:CDS
TATTAGATTAAACATGTCGA+TGG 0.590652 5_2:+7222184 Msa0753590:five_prime_UTR
AGTGGGCAAAGACAGTGCAT+TGG 0.590819 5_2:-7222466 None:intergenic
TTGATACCATTCAACGACGC+TGG 0.597431 5_2:-7222505 None:intergenic
TTATAACTCTGACTCCCTTG+AGG 0.597717 5_2:+7223712 Msa0753590:CDS
GGCAAAGACAGTGCATTGGA+TGG 0.598751 5_2:-7222462 None:intergenic
AAAAGGCTTTCTCACCTCAA+GGG 0.622988 5_2:-7223726 None:intergenic
GGAGACATGAACAGCCCAAG+TGG 0.630578 5_2:-7222484 None:intergenic
CAAAATGCTCCACCAAGTAG+AGG 0.635947 5_2:-7223668 None:intergenic
AAGTTGTTTCTACAACGTTG+AGG 0.647322 5_2:-7222398 None:intergenic
TTATAGCTATGGCTTTGGTG+TGG 0.649963 5_2:+7222650 Msa0753590:CDS
AGAAGGAAGTAGCAAAACCA+TGG 0.662724 5_2:+7222239 Msa0753590:exon
AAGTGGAAGTTGAATGTACG+AGG 0.666941 5_2:-7222421 None:intergenic
TCTGGGCATGAAGCTTGGAA+GGG 0.672398 5_2:+7222688 Msa0753590:CDS
GAGACATGAACAGCCCAAGT+GGG 0.672772 5_2:-7222483 None:intergenic
TGATTTATATATCCGGTATG+CGG 0.678633 5_2:-7226234 None:intergenic
GGTATTGGTAGCTCTTCAAG+CGG 0.681354 5_2:+7226175 Msa0753590:intron
TGACATTGACAAATAATACA+GGG 0.685502 5_2:-7226520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATAAAAAAAAAAAA+AGG + chr5_2:7222626-7222645 Msa0753590:intron 0.0%
!!! TTTTTTTTTAATTTATTTTT+TGG - chr5_2:7223443-7223462 None:intergenic 0.0%
!!! ATTTTACTGTTATTATTATT+AGG + chr5_2:7222762-7222781 Msa0753590:intron 10.0%
!!! ATTCATTCTTTTTTTTTTTT+TGG + chr5_2:7223166-7223185 Msa0753590:intron 10.0%
!!! AAAAAATTGATTTATCATTT+TGG + chr5_2:7223457-7223476 Msa0753590:intron 10.0%
!!! AAAAATTGATTTATCATTTT+GGG + chr5_2:7223458-7223477 Msa0753590:intron 10.0%
!!! ATATAAATAATCTCTTTTTA+TGG - chr5_2:7224494-7224513 None:intergenic 10.0%
!!! TTAAAGACATTTTAAATATG+TGG - chr5_2:7223232-7223251 None:intergenic 15.0%
!!! AAAATTGATTTATCATTTTG+GGG + chr5_2:7223459-7223478 Msa0753590:intron 15.0%
!!! TACAATTTGTTTCATTAATT+TGG + chr5_2:7225071-7225090 Msa0753590:intron 15.0%
!!! TTTTTTTTTTCTTTTTCTGA+AGG - chr5_2:7225172-7225191 None:intergenic 15.0%
!!! AATACAGAAAATTTGTTTTT+TGG + chr5_2:7225971-7225990 Msa0753590:intron 15.0%
!! TTAATCTAATATTGCAAGTT+GGG - chr5_2:7222175-7222194 None:intergenic 20.0%
!! TTTAATCTAATATTGCAAGT+TGG - chr5_2:7222176-7222195 None:intergenic 20.0%
!! TTAAAATACTAGAGTAGTAT+TGG - chr5_2:7222589-7222608 None:intergenic 20.0%
!! AAAAAAAAGGATTATAGCTA+TGG + chr5_2:7222639-7222658 Msa0753590:intron 20.0%
!! TAAAAAATTGAGTATAGTTG+AGG + chr5_2:7222810-7222829 Msa0753590:intron 20.0%
!! ATATTTGAACACAATTTGAA+TGG + chr5_2:7223057-7223076 Msa0753590:intron 20.0%
!! TACAACAATTAGATAACATA+GGG - chr5_2:7223644-7223663 None:intergenic 20.0%
!!! ATAATCTCTTTTTATGGAAT+TGG - chr5_2:7224488-7224507 None:intergenic 20.0%
!! TTTATATTCATTGTCATGAT+AGG + chr5_2:7224507-7224526 Msa0753590:intron 20.0%
!!! CTTAGGTATAATATAGATTT+TGG - chr5_2:7224766-7224785 None:intergenic 20.0%
!! CAAAATCTATATTATACCTA+AGG + chr5_2:7224764-7224783 Msa0753590:intron 20.0%
!!! TAACAGTTTTAATTTCATGA+AGG - chr5_2:7224844-7224863 None:intergenic 20.0%
!!! AAATAAGAATGATGTTTTTG+TGG - chr5_2:7224961-7224980 None:intergenic 20.0%
!!! TTTTAAACAGTTTCTTTTCT+TGG + chr5_2:7224983-7225002 Msa0753590:intron 20.0%
!! AAGAAAAAAAAAACTTCTGT+AGG + chr5_2:7225179-7225198 Msa0753590:intron 20.0%
!! TATGACTATAATACAAAATG+TGG + chr5_2:7225436-7225455 Msa0753590:intron 20.0%
!!! AATTATTAGTTTTCCTTCAA+TGG - chr5_2:7225632-7225651 None:intergenic 20.0%
!! ACTAATAATTAAAGACGAAA+TGG + chr5_2:7225642-7225661 Msa0753590:intron 20.0%
!! CTAATAATTAAAGACGAAAT+GGG + chr5_2:7225643-7225662 Msa0753590:intron 20.0%
!! TATATATAATAGCAGTACAA+TGG - chr5_2:7225937-7225956 None:intergenic 20.0%
!! TTGTAAATCAGTAAAAGATT+AGG - chr5_2:7226337-7226356 None:intergenic 20.0%
! TAATCTAATATTGCAAGTTG+GGG - chr5_2:7222174-7222193 None:intergenic 25.0%
! TATTAGATTAAACATGTCGA+TGG + chr5_2:7222184-7222203 Msa0753590:five_prime_UTR 25.0%
! TTGAAAACTCTTGAATTTGA+CGG - chr5_2:7222324-7222343 None:intergenic 25.0%
!! TCAAAATTGCGTTTGATTTA+TGG - chr5_2:7222973-7222992 None:intergenic 25.0%
!! ATTTTGAACGTCATTAACTA+TGG + chr5_2:7222986-7223005 Msa0753590:intron 25.0%
! TTATATTCATTAATCACCAC+CGG + chr5_2:7223200-7223219 Msa0753590:intron 25.0%
! TTTAAATATGTGGTTACATC+CGG - chr5_2:7223222-7223241 None:intergenic 25.0%
! GTATCTAAACATTATACGTT+TGG - chr5_2:7223370-7223389 None:intergenic 25.0%
! CTACAACAATTAGATAACAT+AGG - chr5_2:7223645-7223664 None:intergenic 25.0%
! CTATGTTATCTAATTGTTGT+AGG + chr5_2:7223643-7223662 Msa0753590:intron 25.0%
! TTAATAGATGTTCTGTATAG+AGG - chr5_2:7223754-7223773 None:intergenic 25.0%
!!! ATTTCGGCTTTAAATATGAA+CGG - chr5_2:7223809-7223828 None:intergenic 25.0%
!! TTCATATTTAAAGCCGAAAT+GGG + chr5_2:7223809-7223828 Msa0753590:intron 25.0%
! TAAACAACACTTGAAAGAAT+AGG - chr5_2:7224108-7224127 None:intergenic 25.0%
! ATTGAATTTGGTCAAAATGA+GGG + chr5_2:7224186-7224205 Msa0753590:intron 25.0%
! CATCATATAAGTGTTTATCA+TGG - chr5_2:7224362-7224381 None:intergenic 25.0%
! ATCTATATTATACCTAAGGT+TGG + chr5_2:7224768-7224787 Msa0753590:intron 25.0%
! TCTATATTATACCTAAGGTT+GGG + chr5_2:7224769-7224788 Msa0753590:intron 25.0%
!!! TTTTGTAACTTGCTTCTTTT+TGG + chr5_2:7224924-7224943 Msa0753590:intron 25.0%
! ATTCAATTCCTCAAATTACT+TGG - chr5_2:7225052-7225071 None:intergenic 25.0%
!!! TTTACCTTAGATTTTGAGAA+TGG - chr5_2:7225114-7225133 None:intergenic 25.0%
! AAAAAAAACTTCTGTAGGTT+TGG + chr5_2:7225184-7225203 Msa0753590:intron 25.0%
! TATAATACAAAATGTGGCTT+AGG + chr5_2:7225442-7225461 Msa0753590:intron 25.0%
! TAATACATTGGTATACCAAA+TGG - chr5_2:7225730-7225749 None:intergenic 25.0%
! ATTTGGTATACCAATGTATT+AGG + chr5_2:7225729-7225748 Msa0753590:intron 25.0%
!!! AGATTTTAGCACAATATGTA+CGG - chr5_2:7226095-7226114 None:intergenic 25.0%
! AATCTGATTGAATGTGAAAT+AGG + chr5_2:7226110-7226129 Msa0753590:intron 25.0%
! ATCTGATTGAATGTGAAATA+GGG + chr5_2:7226111-7226130 Msa0753590:intron 25.0%
! TGACATTGACAAATAATACA+GGG - chr5_2:7226523-7226542 None:intergenic 25.0%
! TTGACATTGACAAATAATAC+AGG - chr5_2:7226524-7226543 None:intergenic 25.0%
GAGTTATCTGAAAAAACAAG+AGG + chr5_2:7222213-7222232 Msa0753590:five_prime_UTR 30.0%
! AATAACAGTAGCTATCGATT+TGG + chr5_2:7222342-7222361 Msa0753590:CDS 30.0%
! TTTAACTTATCCGTTCTATC+TGG + chr5_2:7222535-7222554 Msa0753590:intron 30.0%
AAGTCCTACATTTCTTGTAA+AGG + chr5_2:7222880-7222899 Msa0753590:intron 30.0%
TCTTCCTTTACAAGAAATGT+AGG - chr5_2:7222887-7222906 None:intergenic 30.0%
ACATTTCTTGTAAAGGAAGA+AGG + chr5_2:7222887-7222906 Msa0753590:intron 30.0%
! CGTCATTAACTATGGTTTTT+AGG + chr5_2:7222994-7223013 Msa0753590:intron 30.0%
AATCGTGATTAATGACATGT+AGG + chr5_2:7223113-7223132 Msa0753590:intron 30.0%
ATCGTGATTAATGACATGTA+GGG + chr5_2:7223114-7223133 Msa0753590:intron 30.0%
ACTACATTTGCAATTGCAAA+TGG - chr5_2:7223606-7223625 None:intergenic 30.0%
TGTTCTGTATAGAGGAAAAA+AGG - chr5_2:7223746-7223765 None:intergenic 30.0%
! ACTACTAGAATTGTTGATTG+AGG + chr5_2:7223780-7223799 Msa0753590:intron 30.0%
! CTACTAGAATTGTTGATTGA+GGG + chr5_2:7223781-7223800 Msa0753590:intron 30.0%
! GTTCATATTTAAAGCCGAAA+TGG + chr5_2:7223808-7223827 Msa0753590:intron 30.0%
TTATACAAGAAGACCCATTT+CGG - chr5_2:7223825-7223844 None:intergenic 30.0%
ATGTTGAGAGAAAATCATTC+AGG - chr5_2:7223894-7223913 None:intergenic 30.0%
! TGTCATGAATTTGTTCCATA+AGG - chr5_2:7224038-7224057 None:intergenic 30.0%
GATTGAATTTGGTCAAAATG+AGG + chr5_2:7224185-7224204 Msa0753590:intron 30.0%
CATTTAGGGGACATTTAAAT+TGG + chr5_2:7224224-7224243 Msa0753590:intron 30.0%
AAATCTGGTCTATTAGGAAT+TGG + chr5_2:7224429-7224448 Msa0753590:intron 30.0%
GCAAAATTCTGAATGTATTG+TGG - chr5_2:7224561-7224580 None:intergenic 30.0%
AATGAGTGAATGATCGTAAA+AGG + chr5_2:7224792-7224811 Msa0753590:intron 30.0%
!! ATGTTTTTGTGGTGGTTAAT+TGG - chr5_2:7224950-7224969 None:intergenic 30.0%
!! TAAGAATGATGTTTTTGTGG+TGG - chr5_2:7224958-7224977 None:intergenic 30.0%
!! ATTTTGAGAATGGTTAGAGA+TGG - chr5_2:7225104-7225123 None:intergenic 30.0%
CTAACCATTCTCAAAATCTA+AGG + chr5_2:7225107-7225126 Msa0753590:intron 30.0%
!! GATAAGTTTGCTGTGTTTAA+AGG + chr5_2:7225466-7225485 Msa0753590:intron 30.0%
AAACTAAGACTGTAAGTTAG+TGG + chr5_2:7225572-7225591 Msa0753590:intron 30.0%
AGTCTACATTCAGATAGAAA+GGG - chr5_2:7225675-7225694 None:intergenic 30.0%
AAGTCTACATTCAGATAGAA+AGG - chr5_2:7225676-7225695 None:intergenic 30.0%
TTAGAAACAAAACTGCCATT+TGG + chr5_2:7225712-7225731 Msa0753590:intron 30.0%
TGCAATCATAATGTCTTCTA+TGG + chr5_2:7226009-7226028 Msa0753590:intron 30.0%
TCTGATTGAATGTGAAATAG+GGG + chr5_2:7226112-7226131 Msa0753590:intron 30.0%
GGTTCTGCATATGAAATTAA+TGG + chr5_2:7226133-7226152 Msa0753590:intron 30.0%
TTGAAATGAATTGCAGGTAT+TGG + chr5_2:7226160-7226179 Msa0753590:intron 30.0%
TGATTTATATATCCGGTATG+CGG - chr5_2:7226237-7226256 None:intergenic 30.0%
CAAAATTATTCAGTGACAGA+TGG + chr5_2:7226354-7226373 Msa0753590:three_prime_UTR 30.0%
TAAGATCAAAAGCAACATCA+AGG - chr5_2:7226409-7226428 None:intergenic 30.0%
TGATCTTATCTGTGTAACTT+TGG + chr5_2:7226421-7226440 Msa0753590:three_prime_UTR 30.0%
TTAATGTATCAGTATGCAGT+TGG - chr5_2:7226490-7226509 None:intergenic 30.0%
TTGACAAATAATACAGGGAA+AGG - chr5_2:7226518-7226537 None:intergenic 30.0%
!! ATTTTGGGAGTAGAACAACA+TGG - chr5_2:7222294-7222313 None:intergenic 35.0%
ACTCTTGAATTTGACGGAAA+CGG - chr5_2:7222318-7222337 None:intergenic 35.0%
!! AAGTTGTTTCTACAACGTTG+AGG - chr5_2:7222401-7222420 None:intergenic 35.0%
!! TCTTGAAGTTCAAGTTGAAG+TGG - chr5_2:7222441-7222460 None:intergenic 35.0%
! TACTAGAGTACCAGATAGAA+CGG - chr5_2:7222548-7222567 None:intergenic 35.0%
AAGGATTATAGCTATGGCTT+TGG + chr5_2:7222645-7222664 Msa0753590:intron 35.0%
GTTGAGGTAGTTCAAATTGT+TGG + chr5_2:7222826-7222845 Msa0753590:intron 35.0%
!! GTTCAAATTGTTGGTGTTGT+TGG + chr5_2:7222835-7222854 Msa0753590:intron 35.0%
ACCAACCAAGACTATATACA+TGG + chr5_2:7222912-7222931 Msa0753590:intron 35.0%
! TCCATGTATATAGTCTTGGT+TGG - chr5_2:7222916-7222935 None:intergenic 35.0%
AGAGTCCATGTATATAGTCT+TGG - chr5_2:7222920-7222939 None:intergenic 35.0%
TGATTAATGACATGTAGGGA+CGG + chr5_2:7223118-7223137 Msa0753590:intron 35.0%
AGCAAATTTCGACAACAATC+TGG - chr5_2:7223259-7223278 None:intergenic 35.0%
GCGCTTAAACACTATACATT+CGG + chr5_2:7223518-7223537 Msa0753590:intron 35.0%
TTGTCACAAAACACCATGAA+TGG + chr5_2:7223851-7223870 Msa0753590:intron 35.0%
!! AATTTGCTTTTAAGCTCCAG+CGG - chr5_2:7224073-7224092 None:intergenic 35.0%
TGTTTATCATGGAGAGCTTA+TGG - chr5_2:7224351-7224370 None:intergenic 35.0%
AATGCCAAATGGTCAAAATC+TGG + chr5_2:7224414-7224433 Msa0753590:intron 35.0%
!! TAGACCAGATTTTGACCATT+TGG - chr5_2:7224421-7224440 None:intergenic 35.0%
TGGTCAAAATCTGGTCTATT+AGG + chr5_2:7224423-7224442 Msa0753590:intron 35.0%
TGGTCTATTAGGAATTGGAT+TGG + chr5_2:7224434-7224453 Msa0753590:intron 35.0%
!! TGTGATGAGATTTTGATCAG+AGG - chr5_2:7224465-7224484 None:intergenic 35.0%
CAATTGTTGACAGCAAAAGA+TGG - chr5_2:7224681-7224700 None:intergenic 35.0%
ACAGCATCAACAACAACAAA+AGG - chr5_2:7224735-7224754 None:intergenic 35.0%
AGTGAATGATCGTAAAAGGA+AGG + chr5_2:7224796-7224815 Msa0753590:intron 35.0%
ACAACCAATTCAGACATTGT+AGG + chr5_2:7225024-7225043 Msa0753590:intron 35.0%
TGTAGGTACCAAGTAATTTG+AGG + chr5_2:7225041-7225060 Msa0753590:intron 35.0%
CCTAGATTGTCTAAAAAGGA+TGG - chr5_2:7225362-7225381 None:intergenic 35.0%
! CCATCCTTTTTAGACAATCT+AGG + chr5_2:7225359-7225378 Msa0753590:intron 35.0%
GAGGTATGTAACTAGAGAAT+GGG + chr5_2:7225533-7225552 Msa0753590:intron 35.0%
GACTGTAAGTTAGTGGAAAT+TGG + chr5_2:7225579-7225598 Msa0753590:intron 35.0%
GTCTACATTCAGATAGAAAG+GGG - chr5_2:7225674-7225693 None:intergenic 35.0%
! GATTCGACAAAGTTTTACGT+TGG - chr5_2:7225824-7225843 None:intergenic 35.0%
TTTGTCGAATCTCTATGACA+TGG + chr5_2:7225833-7225852 Msa0753590:intron 35.0%
ACATGGACCAAATACGATTA+TGG + chr5_2:7225850-7225869 Msa0753590:intron 35.0%
AATGGTATACAACAACAACC+AGG - chr5_2:7225919-7225938 None:intergenic 35.0%
TTCTTGTTGCATGAGAACAA+TGG + chr5_2:7226061-7226080 Msa0753590:intron 35.0%
!!! GGCTTTTTGAAATGAATTGC+AGG + chr5_2:7226154-7226173 Msa0753590:intron 35.0%
AAATATTCTCAGAGCTTTCG+CGG - chr5_2:7226262-7226281 None:intergenic 35.0%
GAAAAAACAAGAGGCCAAGA+AGG + chr5_2:7222222-7222241 Msa0753590:five_prime_UTR 40.0%
!! TGGTTTTGCTACTTCCTTCT+TGG - chr5_2:7222239-7222258 None:intergenic 40.0%
AGAAGGAAGTAGCAAAACCA+TGG + chr5_2:7222239-7222258 Msa0753590:exon 40.0%
! TTTGACGGAAACGGGATTTT+GGG - chr5_2:7222309-7222328 None:intergenic 40.0%
! ATTTGACGGAAACGGGATTT+TGG - chr5_2:7222310-7222329 None:intergenic 40.0%
CTCTTGAATTTGACGGAAAC+GGG - chr5_2:7222317-7222336 None:intergenic 40.0%
! TAGACCAGCTTTCGGTTTTA+AGG - chr5_2:7222370-7222389 None:intergenic 40.0%
TTCTACAACGTTGAGGAAGT+GGG - chr5_2:7222394-7222413 None:intergenic 40.0%
TTTCTACAACGTTGAGGAAG+TGG - chr5_2:7222395-7222414 None:intergenic 40.0%
AAGTGGAAGTTGAATGTACG+AGG - chr5_2:7222424-7222443 None:intergenic 40.0%
!! TTATAGCTATGGCTTTGGTG+TGG + chr5_2:7222650-7222669 Msa0753590:CDS 40.0%
TAAAAAACTTACCATGCCCC+AGG - chr5_2:7222719-7222738 None:intergenic 40.0%
AAATATGTGGTTACATCCGG+TGG - chr5_2:7223219-7223238 None:intergenic 40.0%
!! ACTCTAGAGCTAGTCTTGTA+TGG + chr5_2:7223337-7223356 Msa0753590:intron 40.0%
GTAGCAGAGAAATACTTGCT+TGG - chr5_2:7223552-7223571 None:intergenic 40.0%
AGCAAGTATTTCTCTGCTAC+TGG + chr5_2:7223552-7223571 Msa0753590:intron 40.0%
TTGTTGTAGGTACCTCTACT+TGG + chr5_2:7223656-7223675 Msa0753590:intron 40.0%
TTATAACTCTGACTCCCTTG+AGG + chr5_2:7223712-7223731 Msa0753590:CDS 40.0%
AAAAGGCTTTCTCACCTCAA+GGG - chr5_2:7223729-7223748 None:intergenic 40.0%
AAAAAGGCTTTCTCACCTCA+AGG - chr5_2:7223730-7223749 None:intergenic 40.0%
CAAAACACCATGAATGGCTA+CGG + chr5_2:7223857-7223876 Msa0753590:intron 40.0%
! CATTTTACTTGTCGCAGCAA+TGG + chr5_2:7223923-7223942 Msa0753590:intron 40.0%
GTGCAAGAAAAAGCAAAGCA+CGG + chr5_2:7224142-7224161 Msa0753590:intron 40.0%
TGCAAGAAAAAGCAAAGCAC+GGG + chr5_2:7224143-7224162 Msa0753590:intron 40.0%
TCAGGTAGAGGTTGCATTTA+GGG + chr5_2:7224210-7224229 Msa0753590:intron 40.0%
AACAGTATCACGAGTGCTTA+TGG - chr5_2:7224271-7224290 None:intergenic 40.0%
TTAGACAGCATATGAAGGAC+TGG - chr5_2:7224390-7224409 None:intergenic 40.0%
! TCGCTTTAGACAGCATATGA+AGG - chr5_2:7224395-7224414 None:intergenic 40.0%
! TGTCTAAAGCGAATGCCAAA+TGG + chr5_2:7224403-7224422 Msa0753590:intron 40.0%
ACAAAGCAAAGCTGAAAGCT+GGG + chr5_2:7224581-7224600 Msa0753590:intron 40.0%
CTCATTTGCCTAGTTGTGAA+AGG + chr5_2:7224617-7224636 Msa0753590:intron 40.0%
ATTTGCCTAGTTGTGAAAGG+CGG + chr5_2:7224620-7224639 Msa0753590:intron 40.0%
GCGGTTGGAGTTGAAATTAT+TGG + chr5_2:7224639-7224658 Msa0753590:intron 40.0%
AACAATTGTTGCCATCACCA+AGG + chr5_2:7224693-7224712 Msa0753590:intron 40.0%
ACAACAAAAGGAGGAGAAAC+CGG - chr5_2:7224723-7224742 None:intergenic 40.0%
GCATCAACAACAACAAAAGG+AGG - chr5_2:7224732-7224751 None:intergenic 40.0%
ATTCACTCATTCCCAACCTT+AGG - chr5_2:7224783-7224802 None:intergenic 40.0%
GGTACCTACAATGTCTGAAT+TGG - chr5_2:7225031-7225050 None:intergenic 40.0%
ACTTCTGTAGGTTTGGATAC+AGG + chr5_2:7225191-7225210 Msa0753590:intron 40.0%
CAAAACTCTAGCACAGTTGT+CGG - chr5_2:7225233-7225252 None:intergenic 40.0%
AAAAAGGATGGTGAGAGATG+AGG - chr5_2:7225350-7225369 None:intergenic 40.0%
CAGGCCTAGATTGTCTAAAA+AGG - chr5_2:7225366-7225385 None:intergenic 40.0%
ACTAGCACAGTTGAACAATC+AGG - chr5_2:7225385-7225404 None:intergenic 40.0%
!! GGACATGGTTGATGAAAGAA+GGG - chr5_2:7225509-7225528 None:intergenic 40.0%
!! AGGACATGGTTGATGAAAGA+AGG - chr5_2:7225510-7225529 None:intergenic 40.0%
CTTTCATCAACCATGTCCTA+TGG + chr5_2:7225511-7225530 Msa0753590:intron 40.0%
TTACATACCTCCATAGGACA+TGG - chr5_2:7225524-7225543 None:intergenic 40.0%
CTCTAGTTACATACCTCCAT+AGG - chr5_2:7225530-7225549 None:intergenic 40.0%
! GGAGGTATGTAACTAGAGAA+TGG + chr5_2:7225532-7225551 Msa0753590:intron 40.0%
CAAGGCTATGCCTAATACAT+TGG - chr5_2:7225742-7225761 None:intergenic 40.0%
TGAAAGAAGAGGGTTGTGTT+AGG + chr5_2:7225789-7225808 Msa0753590:intron 40.0%
GATTGCGCCATAATCGTATT+TGG - chr5_2:7225860-7225879 None:intergenic 40.0%
!! CTTTTCCCACTAAGTTGGAT+CGG - chr5_2:7225895-7225914 None:intergenic 40.0%
CGCGGGATGATTTATATATC+CGG - chr5_2:7226244-7226263 None:intergenic 40.0%
AATATTCTCAGAGCTTTCGC+GGG - chr5_2:7226261-7226280 None:intergenic 40.0%
TATGCAGTTGGATTCTCTAG+TGG - chr5_2:7226478-7226497 None:intergenic 40.0%
GGAACCTTAAAACCGAAAGC+TGG + chr5_2:7222363-7222382 Msa0753590:CDS 45.0%
AAGTGGGATAGACCAGCTTT+CGG - chr5_2:7222378-7222397 None:intergenic 45.0%
TTGATACCATTCAACGACGC+TGG - chr5_2:7222508-7222527 None:intergenic 45.0%
!! ATGGCTTTGGTGTGGCAATA+TGG + chr5_2:7222658-7222677 Msa0753590:CDS 45.0%
!! TGGCTTTGGTGTGGCAATAT+GGG + chr5_2:7222659-7222678 Msa0753590:CDS 45.0%
TGGCAATATGGGGAGAAATC+TGG + chr5_2:7222670-7222689 Msa0753590:CDS 45.0%
GGCAATATGGGGAGAAATCT+GGG + chr5_2:7222671-7222690 Msa0753590:CDS 45.0%
AGAAATCTGGGCATGAAGCT+TGG + chr5_2:7222683-7222702 Msa0753590:CDS 45.0%
!! GACTAGCTCTAGAGTAGCAA+TGG - chr5_2:7223332-7223351 None:intergenic 45.0%
ACACACACAGAGATGCAAAG+AGG - chr5_2:7223492-7223511 None:intergenic 45.0%
TTGTAGGTACCTCTACTTGG+TGG + chr5_2:7223659-7223678 Msa0753590:intron 45.0%
CAAAATGCTCCACCAAGTAG+AGG - chr5_2:7223671-7223690 None:intergenic 45.0%
! GAGCATTTTGTGCATGCACA+TGG + chr5_2:7223681-7223700 Msa0753590:CDS 45.0%
AAACCTTCCGTAGCCATTCA+TGG - chr5_2:7223867-7223886 None:intergenic 45.0%
TCAACAACGTCTCGACCTTA+TGG + chr5_2:7224020-7224039 Msa0753590:intron 45.0%
GACAGTTTAAACTAAGCCGC+TGG + chr5_2:7224054-7224073 Msa0753590:intron 45.0%
GCAAGAAAAAGCAAAGCACG+GGG + chr5_2:7224144-7224163 Msa0753590:intron 45.0%
TTTGGTCAAAATGAGGGCTC+AGG + chr5_2:7224192-7224211 Msa0753590:intron 45.0%
CTCAGGTAGAGGTTGCATTT+AGG + chr5_2:7224209-7224228 Msa0753590:intron 45.0%
CAGGTAGAGGTTGCATTTAG+GGG + chr5_2:7224211-7224230 Msa0753590:intron 45.0%
TCACGAGTGCTTATGGTAGT+AGG - chr5_2:7224264-7224283 None:intergenic 45.0%
CATTGTCATGATAGGCAGCT+TGG + chr5_2:7224515-7224534 Msa0753590:intron 45.0%
CACAAAGCAAAGCTGAAAGC+TGG + chr5_2:7224580-7224599 Msa0753590:intron 45.0%
CAGAAACAACACACTTCTGC+AGG + chr5_2:7225142-7225161 Msa0753590:intron 45.0%
GCACAGTTGTCGGAATCTTA+TGG - chr5_2:7225223-7225242 None:intergenic 45.0%
GAAGGGATAACTATCTGCAC+AGG - chr5_2:7225492-7225511 None:intergenic 45.0%
TCATCAACCATGTCCTATGG+AGG + chr5_2:7225514-7225533 Msa0753590:intron 45.0%
! CCTTCAATGGTCTTAGACAG+AGG - chr5_2:7225619-7225638 None:intergenic 45.0%
! CCTCTGTCTAAGACCATTGA+AGG + chr5_2:7225616-7225635 Msa0753590:intron 45.0%
ACAACCCTCTTCTTTCATCC+GGG - chr5_2:7225786-7225805 None:intergenic 45.0%
CACAACCCTCTTCTTTCATC+CGG - chr5_2:7225787-7225806 None:intergenic 45.0%
! AAGTTTTACGTTGGCCGTTG+AGG - chr5_2:7225815-7225834 None:intergenic 45.0%
! ACTAAGTTGGATCGGCTACA+TGG - chr5_2:7225887-7225906 None:intergenic 45.0%
ATGTAGCCGATCCAACTTAG+TGG + chr5_2:7225886-7225905 Msa0753590:intron 45.0%
TGTAGCCGATCCAACTTAGT+GGG + chr5_2:7225887-7225906 Msa0753590:intron 45.0%
CGATCCAACTTAGTGGGAAA+AGG + chr5_2:7225893-7225912 Msa0753590:intron 45.0%
!! GGTATTGGTAGCTCTTCAAG+CGG + chr5_2:7226175-7226194 Msa0753590:intron 45.0%
CAAGCGGCACTAACTGTTAT+AGG + chr5_2:7226191-7226210 Msa0753590:CDS 45.0%
!!! AATTTAAAATAAATGAAAAA+AGG - chr5_2:7226588-7226607 None:intergenic 5.0%
GGCAAAGACAGTGCATTGGA+TGG - chr5_2:7222465-7222484 None:intergenic 50.0%
AGTGGGCAAAGACAGTGCAT+TGG - chr5_2:7222469-7222488 None:intergenic 50.0%
ATGCACTGTCTTTGCCCACT+TGG + chr5_2:7222469-7222488 Msa0753590:CDS 50.0%
TGCACTGTCTTTGCCCACTT+GGG + chr5_2:7222470-7222489 Msa0753590:CDS 50.0%
GAGACATGAACAGCCCAAGT+GGG - chr5_2:7222486-7222505 None:intergenic 50.0%
ATGTCTCCAGCGTCGTTGAA+TGG + chr5_2:7222499-7222518 Msa0753590:CDS 50.0%
! GGCTTTGGTGTGGCAATATG+GGG + chr5_2:7222660-7222679 Msa0753590:CDS 50.0%
ATCTGGGCATGAAGCTTGGA+AGG + chr5_2:7222687-7222706 Msa0753590:CDS 50.0%
TCTGGGCATGAAGCTTGGAA+GGG + chr5_2:7222688-7222707 Msa0753590:CDS 50.0%
AAGCTTGGAAGGGTCTTTCC+TGG + chr5_2:7222698-7222717 Msa0753590:CDS 50.0%
AGCTTGGAAGGGTCTTTCCT+GGG + chr5_2:7222699-7222718 Msa0753590:CDS 50.0%
ACACCATGAATGGCTACGGA+AGG + chr5_2:7223861-7223880 Msa0753590:intron 50.0%
AGAAAAAGCAAAGCACGGGG+TGG + chr5_2:7224147-7224166 Msa0753590:intron 50.0%
GAAAAAGCAAAGCACGGGGT+GGG + chr5_2:7224148-7224167 Msa0753590:intron 50.0%
AAAAAGCAAAGCACGGGGTG+GGG + chr5_2:7224149-7224168 Msa0753590:intron 50.0%
CAAAATGAGGGCTCAGGTAG+AGG + chr5_2:7224198-7224217 Msa0753590:intron 50.0%
TGTCATGATAGGCAGCTTGG+TGG + chr5_2:7224518-7224537 Msa0753590:intron 50.0%
! ATAGGCAGCTTGGTGGATGT+TGG + chr5_2:7224525-7224544 Msa0753590:intron 50.0%
CAAAGCTGAAAGCTGGGCTT+TGG + chr5_2:7224587-7224606 Msa0753590:intron 50.0%
TCCAACCGCCTTTCACAACT+AGG - chr5_2:7224628-7224647 None:intergenic 50.0%
ATTGTTGCCATCACCAAGGC+CGG + chr5_2:7224697-7224716 Msa0753590:intron 50.0%
CTCTTCTTTCATCCGGGCTT+GGG - chr5_2:7225780-7225799 None:intergenic 50.0%
CAAGCCCGGATGAAAGAAGA+GGG + chr5_2:7225779-7225798 Msa0753590:intron 50.0%
AGGGTTGTGTTAGGCCTCAA+CGG + chr5_2:7225798-7225817 Msa0753590:intron 50.0%
! CAGGCCTTTTCCCACTAAGT+TGG - chr5_2:7225900-7225919 None:intergenic 50.0%
CAACTTAGTGGGAAAAGGCC+TGG + chr5_2:7225898-7225917 Msa0753590:intron 50.0%
CAATGTGCATAGCCGCATAC+CGG + chr5_2:7226222-7226241 Msa0753590:CDS 50.0%
GGAGACATGAACAGCCCAAG+TGG - chr5_2:7222487-7222506 None:intergenic 55.0%
GCTTGGAAGGGTCTTTCCTG+GGG + chr5_2:7222700-7222719 Msa0753590:CDS 55.0%
AAAAGCAAAGCACGGGGTGG+GGG + chr5_2:7224150-7224169 Msa0753590:intron 55.0%
GGTGGGGGCAGGATTGAATT+TGG + chr5_2:7224174-7224193 Msa0753590:intron 55.0%
! GCAGCTTGGTGGATGTTGGT+TGG + chr5_2:7224529-7224548 Msa0753590:intron 55.0%
GCCTAGTTGTGAAAGGCGGT+TGG + chr5_2:7224624-7224643 Msa0753590:intron 55.0%
CAAAAGGAGGAGAAACCGGC+CGG - chr5_2:7224719-7224738 None:intergenic 55.0%
CCTCTTCTTTCATCCGGGCT+TGG - chr5_2:7225781-7225800 None:intergenic 55.0%
CCAAGCCCGGATGAAAGAAG+AGG + chr5_2:7225778-7225797 Msa0753590:intron 55.0%
CAACGTAGCTGCAGCAGCCA+TGG - chr5_2:7222259-7222278 None:intergenic 60.0%
GAAGGGTCTTTCCTGGGGCA+TGG + chr5_2:7222705-7222724 Msa0753590:CDS 60.0%
AAAGCAAAGCACGGGGTGGG+GGG + chr5_2:7224151-7224170 Msa0753590:intron 60.0%
GGGACAGGCTACGCATAGCA+AGG - chr5_2:7225760-7225779 None:intergenic 60.0%
CTTTCATCCGGGCTTGGGAC+AGG - chr5_2:7225775-7225794 None:intergenic 60.0%
AAGCAAAGCACGGGGTGGGG+GGG + chr5_2:7224152-7224171 Msa0753590:intron 65.0%
TTGCCATCACCAAGGCCGGC+CGG + chr5_2:7224701-7224720 Msa0753590:intron 65.0%
AAACCGGCCGGCCTTGGTGA+TGG - chr5_2:7224707-7224726 None:intergenic 65.0%
TGCGTAGCCTGTCCCAAGCC+CGG + chr5_2:7225765-7225784 Msa0753590:intron 65.0%
AGCAAAGCACGGGGTGGGGG+GGG + chr5_2:7224153-7224172 Msa0753590:intron 70.0%
GAGGAGAAACCGGCCGGCCT+TGG - chr5_2:7224713-7224732 None:intergenic 70.0%
AAAGCACGGGGTGGGGGGGG+TGG + chr5_2:7224156-7224175 Msa0753590:intron 75.0%
AAGCACGGGGTGGGGGGGGT+GGG + chr5_2:7224157-7224176 Msa0753590:intron 75.0%
! AGCACGGGGTGGGGGGGGTG+GGG + chr5_2:7224158-7224177 Msa0753590:intron 80.0%
! GCACGGGGTGGGGGGGGTGG+GGG + chr5_2:7224159-7224178 Msa0753590:intron 85.0%
! GGGGTGGGGGGGGTGGGGGC+AGG + chr5_2:7224163-7224182 Msa0753590:intron 90.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 7222171 7226669 7222171 ID=Msa0753590;Name=Msa0753590
chr5_2 mRNA 7222171 7226669 7222171 ID=Msa0753590-mRNA-1;Parent=Msa0753590;Name=Msa0753590-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|0.66|1|4|386|172
chr5_2 exon 7222171 7222520 7222171 ID=Msa0753590-mRNA-1:exon:3215;Parent=Msa0753590-mRNA-1
chr5_2 exon 7222648 7222726 7222648 ID=Msa0753590-mRNA-1:exon:3216;Parent=Msa0753590-mRNA-1
chr5_2 exon 7223665 7223733 7223665 ID=Msa0753590-mRNA-1:exon:3217;Parent=Msa0753590-mRNA-1
chr5_2 exon 7226176 7226669 7226176 ID=Msa0753590-mRNA-1:exon:3218;Parent=Msa0753590-mRNA-1
chr5_2 five_prime_UTR 7222171 7222257 7222171 ID=Msa0753590-mRNA-1:five_prime_utr;Parent=Msa0753590-mRNA-1
chr5_2 CDS 7222258 7222520 7222258 ID=Msa0753590-mRNA-1:cds;Parent=Msa0753590-mRNA-1
chr5_2 CDS 7222648 7222726 7222648 ID=Msa0753590-mRNA-1:cds;Parent=Msa0753590-mRNA-1
chr5_2 CDS 7223665 7223733 7223665 ID=Msa0753590-mRNA-1:cds;Parent=Msa0753590-mRNA-1
chr5_2 CDS 7226176 7226283 7226176 ID=Msa0753590-mRNA-1:cds;Parent=Msa0753590-mRNA-1
chr5_2 three_prime_UTR 7226284 7226669 7226284 ID=Msa0753590-mRNA-1:three_prime_utr;Parent=Msa0753590-mRNA-1
Gene Sequence

>Msa0753590

ATGGCTGCTGCAGCTACGTTGTACTTAGCAAAACCATGTTGTTCTACTCCCAAAATCCCGTTTCCGTCAAATTCAAGAGTTTTCAATAACAGTAGCTATCGATTTGGAACCTTAAAACCGAAAGCTGGTCTATCCCACTTCCTCAACGTTGTAGAAACAACTTCCTCGTACATTCAACTTCCACTTCAACTTGAACTTCAAGAACCATCCAATGCACTGTCTTTGCCCACTTGGGCTGTTCATGTCTCCAGCGTCGTTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATATGGGGAGAAATCTGGGCATGAAGCTTGGAAGGGTCTTTCCTGGGGCATGGTACCTCTACTTGGTGGAGCATTTTGTGCATGCACATGGCATTTCTTTTATAACTCTGACTCCCTTGAGGTATTGGTAGCTCTTCAAGCGGCACTAACTGTTATAGGTAATATAACAATGTGCATAGCCGCATACCGGATATATAAATCATCCCGCGAAAGCTCTGAGAATATTTGA

Protein sequence

>Msa0753590

MAAAATLYLAKPCCSTPKIPFPSNSRVFNNSSYRFGTLKPKAGLSHFLNVVETTSSYIQLPLQLELQEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGHEAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTVIGNITMCIAAYRIYKSSRESSENI*