AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412330 MtrunA17_Chr5g0398491 95.930 172 7 0 1 172 1 172 3.14e-121 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412330 AT4G22830.1 81.905 105 19 0 63 167 82 186 1.51e-60 186
Msa1412330 AT4G22830.2 82.692 104 18 0 64 167 91 194 4.16e-60 186

Find 63 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCCTTCTTCATATAAA+AGG 0.122173 tig0023889:-8397 Msa1412340:intron
ATTTGACGGAAACGGGATTT+TGG 0.159414 tig0023889:-4056 None:intergenic
ATGGCTTTGGTGTGGCAATA+TGG 0.236845 tig0023889:+4402 Msa1412330:CDS
CAAGCGGCACTAACTGTTAT+AGG 0.288834 tig0023889:+7932 Msa1412330:CDS
CTCTTGAATTTGACGGAAAC+GGG 0.296168 tig0023889:-4063 None:intergenic
TGGCAATATGGGGAGAAATC+TGG 0.321722 tig0023889:+4414 Msa1412330:CDS
AAGCTTGGAAGGGTCTTTCC+TGG 0.322451 tig0023889:+4442 Msa1412330:CDS
TCAATCTAATATTGCAAGTT+GGG 0.342782 tig0023889:-3921 None:intergenic
TGGCTTTGGTGTGGCAATAT+GGG 0.345301 tig0023889:+4403 Msa1412330:CDS
AATAACAGTAGCTATCGATT+TGG 0.348207 tig0023889:+4091 Msa1412330:CDS
CGCGGGATGATTTATATATC+CGG 0.376834 tig0023889:-7982 Msa1412340:intron
ATGCACTGTCTTTGCCCACT+TGG 0.377337 tig0023889:+4218 Msa1412330:CDS
TTGTAAATCAGTAAAAGATT+AGG 0.381733 tig0023889:-8075 Msa1412340:intron
ACTCTTGAATTTGACGGAAA+CGG 0.400641 tig0023889:-4064 None:intergenic
TGATCTTATCTGTGTAACTT+TGG 0.404034 tig0023889:+8162 Msa1412330:three_prime_UTR
TTGAAAACTCTTGAATTTGA+CGG 0.404161 tig0023889:-4070 None:intergenic
TTCAATCTAATATTGCAAGT+TGG 0.416584 tig0023889:-3922 None:intergenic
AAGGATTATAGCTATGGCTT+TGG 0.426099 tig0023889:+4389 Msa1412330:intron
AGCTTGGAAGGGTCTTTCCT+GGG 0.439797 tig0023889:+4443 Msa1412330:CDS
AAGTGGGATAGACCAGCTTT+CGG 0.451603 tig0023889:-4124 None:intergenic
GGCAATATGGGGAGAAATCT+GGG 0.453113 tig0023889:+4415 Msa1412330:CDS
TGCACTGTCTTTGCCCACTT+GGG 0.453403 tig0023889:+4219 Msa1412330:CDS
TTTGCCTTCTTCATATAAAA+GGG 0.458042 tig0023889:-8396 Msa1412340:intron
GAAGGGTCTTTCCTGGGGCA+TGG 0.465621 tig0023889:+4449 Msa1412330:CDS
TTGACATTGACAAATAATAC+AGG 0.469573 tig0023889:-8262 Msa1412340:intron
TTTCTACAACGTTGAGGAAG+TGG 0.473835 tig0023889:-4141 None:intergenic
TTGTTGTAGGTACCTCTACT+TGG 0.477528 tig0023889:+5401 Msa1412330:intron
AGAAATCTGGGCATGAAGCT+TGG 0.487427 tig0023889:+4427 Msa1412330:CDS
TTAATGTATCAGTATGCAGT+TGG 0.496794 tig0023889:-8228 Msa1412340:intron
CAAAATTATTCAGTGACAGA+TGG 0.507531 tig0023889:+8095 Msa1412330:three_prime_UTR
TTGTAGGTACCTCTACTTGG+TGG 0.514763 tig0023889:+5404 Msa1412330:intron
ATGTCTCCAGCGTCGTTGAA+TGG 0.515806 tig0023889:+4248 Msa1412330:CDS
CAACGTGGCTGCAGCAGCCA+TGG 0.517662 tig0023889:-4005 None:intergenic
ATCTGGGCATGAAGCTTGGA+AGG 0.518052 tig0023889:+4431 Msa1412330:CDS
AATATTCTCAGAGCTTTCGC+GGG 0.537497 tig0023889:-7999 Msa1412340:intron
GGAACCTTAAAACCGAAAGC+TGG 0.539599 tig0023889:+4112 Msa1412330:CDS
AAATATTCTCAGAGCTTTCG+CGG 0.544529 tig0023889:-8000 Msa1412340:intron
TCTTGAAGTTCAAGTTGAAG+TGG 0.545704 tig0023889:-4187 None:intergenic
TAAGATCAAAAGCAACATCA+AGG 0.554859 tig0023889:-8147 Msa1412340:intron
CAATGTGCATAGCCGCATAC+CGG 0.555634 tig0023889:+7963 Msa1412330:CDS
CAATCTAATATTGCAAGTTG+GGG 0.558435 tig0023889:-3920 None:intergenic
GCTTGGAAGGGTCTTTCCTG+GGG 0.562740 tig0023889:+4444 Msa1412330:CDS
TTGACAAATAATACAGGGAA+AGG 0.566224 tig0023889:-8256 Msa1412340:intron
TTCTACAACGTTGAGGAAGT+GGG 0.570080 tig0023889:-4140 None:intergenic
TATGCAGTTGGATTCTCTAG+TGG 0.587306 tig0023889:-8216 Msa1412340:intron
GGCTTTGGTGTGGCAATATG+GGG 0.589415 tig0023889:+4404 Msa1412330:CDS
AGTGGGCAAAGACAGTGCAT+TGG 0.590819 tig0023889:-4215 None:intergenic
TTGATACCATTCAACGACGC+TGG 0.597431 tig0023889:-4254 None:intergenic
TTATAACTCTGACTCCCTTG+AGG 0.597717 tig0023889:+5457 Msa1412330:CDS
GGCAAAGACAGTGCATTGGA+TGG 0.598751 tig0023889:-4211 None:intergenic
TATTAGATTGAACATGTCGA+TGG 0.599266 tig0023889:+3933 Msa1412330:five_prime_UTR
AAAAGGCTTTCTCACCTCAA+GGG 0.622988 tig0023889:-5471 None:intergenic
GGAGACATGAACAGCCCAAG+TGG 0.630578 tig0023889:-4233 None:intergenic
CAAAATGCTCCACCAAGTAG+AGG 0.635947 tig0023889:-5413 None:intergenic
AAGTTGTTTCTACAACGTTG+AGG 0.647322 tig0023889:-4147 None:intergenic
TTATAGCTATGGCTTTGGTG+TGG 0.649963 tig0023889:+4394 Msa1412330:CDS
AGAAGGAAGTAGCAAAACCA+TGG 0.662724 tig0023889:+3988 Msa1412330:exon
AAGTGGAAGTTGAATGTACG+AGG 0.666941 tig0023889:-4170 None:intergenic
TCTGGGCATGAAGCTTGGAA+GGG 0.672398 tig0023889:+4432 Msa1412330:CDS
GAGACATGAACAGCCCAAGT+GGG 0.672772 tig0023889:-4232 None:intergenic
TGATTTATATATCCGGTATG+CGG 0.678633 tig0023889:-7975 Msa1412340:intron
GGTATTGGTAGCTCTTCAAG+CGG 0.681354 tig0023889:+7916 Msa1412330:intron
TGACATTGACAAATAATACA+GGG 0.685502 tig0023889:-8261 Msa1412340:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAAAAAAAAAAA+AGG + tig0023889:4370-4389 Msa1412330:intron 0.0%
!!! TTTTTTTTTAATTTATTTTT+TGG - tig0023889:5187-5206 None:intergenic 0.0%
!!! ATTTTACTGTTATTATTATT+AGG + tig0023889:4506-4525 Msa1412330:intron 10.0%
!!! AAAAAATTGATTTATCATTT+TGG + tig0023889:5202-5221 Msa1412330:intron 10.0%
!!! AAAAATTGATTTATCATTTT+GGG + tig0023889:5203-5222 Msa1412330:intron 10.0%
!!! ATATAAATAATCTCTTTTTA+TGG - tig0023889:6231-6250 None:intergenic 10.0%
!!! TTAAAGACATTTTAAATATG+TGG - tig0023889:4976-4995 None:intergenic 15.0%
!!! AAAATTGATTTATCATTTTG+GGG + tig0023889:5204-5223 Msa1412330:intron 15.0%
!!! TACAATTTGTTTCATTAATT+TGG + tig0023889:6816-6835 Msa1412330:intron 15.0%
!! TATATATAATATCAGTACAA+TGG - tig0023889:7682-7701 Msa1412340:intron 15.0%
!!! AATACAGAAAATTTGTTTTT+TGG + tig0023889:7712-7731 Msa1412330:intron 15.0%
!! TTAAAATACTAGAGTAGTAT+TGG - tig0023889:4334-4353 None:intergenic 20.0%
!! AAAAAAAAGGATTATAGCTA+TGG + tig0023889:4383-4402 Msa1412330:intron 20.0%
!! TAAAAAATTGAGTATAGTTG+AGG + tig0023889:4554-4573 Msa1412330:intron 20.0%
!! TCATGTATATACAATTTGAA+TGG + tig0023889:4795-4814 Msa1412330:intron 20.0%
!! TACAACAATTAGATAACATA+GGG - tig0023889:5389-5408 None:intergenic 20.0%
!!! ATAATCTCTTTTTATGGAAT+TGG - tig0023889:6225-6244 None:intergenic 20.0%
!! TTTATATTCATTGTCATGAT+AGG + tig0023889:6244-6263 Msa1412330:intron 20.0%
!!! CTTAGGTATAATATAGATTT+TGG - tig0023889:6503-6522 Msa1412340:intron 20.0%
!! CAAAATCTATATTATACCTA+AGG + tig0023889:6501-6520 Msa1412330:intron 20.0%
!!! TAACAGTTTTAATTTCATGA+AGG - tig0023889:6581-6600 Msa1412340:intron 20.0%
!!! AAATAAGAATGATGTTTTTG+TGG - tig0023889:6704-6723 Msa1412340:intron 20.0%
!!! GTTTTTTTTTCTTTTTCTGA+AGG - tig0023889:6917-6936 Msa1412340:intron 20.0%
!! AAAGAAAAAAAAACTTCTGT+AGG + tig0023889:6923-6942 Msa1412330:intron 20.0%
!! TATGACTATAATACAAAATG+TGG + tig0023889:7180-7199 Msa1412330:intron 20.0%
!!! AATTATTAGTTTTCCTTCAA+TGG - tig0023889:7376-7395 Msa1412340:intron 20.0%
!! ACTAATAATTAAAGACGAAA+TGG + tig0023889:7386-7405 Msa1412330:intron 20.0%
!! CTAATAATTAAAGACGAAAT+GGG + tig0023889:7387-7406 Msa1412330:intron 20.0%
!! TTGTAAATCAGTAAAAGATT+AGG - tig0023889:8078-8097 Msa1412340:intron 20.0%
! TCAATCTAATATTGCAAGTT+GGG - tig0023889:3924-3943 None:intergenic 25.0%
! TTCAATCTAATATTGCAAGT+TGG - tig0023889:3925-3944 None:intergenic 25.0%
! TTGAAAACTCTTGAATTTGA+CGG - tig0023889:4073-4092 None:intergenic 25.0%
!! TCAAAATTGCGTTTGATTTA+TGG - tig0023889:4717-4736 None:intergenic 25.0%
!! ATTTTGAACGTCATTAACTA+TGG + tig0023889:4730-4749 Msa1412330:intron 25.0%
! TTATATTCATTAATCACCAC+CGG + tig0023889:4944-4963 Msa1412330:intron 25.0%
! TTTAAATATGTGGTTACATC+CGG - tig0023889:4966-4985 None:intergenic 25.0%
! GTATCTAAACATTATACGTT+TGG - tig0023889:5114-5133 None:intergenic 25.0%
! CTACAACAATTAGATAACAT+AGG - tig0023889:5390-5409 None:intergenic 25.0%
! CTATGTTATCTAATTGTTGT+AGG + tig0023889:5388-5407 Msa1412330:intron 25.0%
! TTAATAGATGTTCTGTATAG+AGG - tig0023889:5499-5518 None:intergenic 25.0%
!!! ATTTCGGCTTTAAATATGAA+CGG - tig0023889:5554-5573 None:intergenic 25.0%
! TTATACAAGAAGATCCATTT+CGG - tig0023889:5570-5589 None:intergenic 25.0%
! ATTGAATTTGGACAAAATGA+GGG + tig0023889:5923-5942 Msa1412330:intron 25.0%
! CATCATATAAGTGTTTATCA+TGG - tig0023889:6099-6118 None:intergenic 25.0%
! ATCTATATTATACCTAAGGT+TGG + tig0023889:6505-6524 Msa1412330:intron 25.0%
! TCTATATTATACCTAAGGTT+GGG + tig0023889:6506-6525 Msa1412330:intron 25.0%
! AATGAGTGAATGATTGTAAA+AGG + tig0023889:6529-6548 Msa1412330:intron 25.0%
!!! TTTTGTAACTTGCTTCTTTT+TGG + tig0023889:6667-6686 Msa1412330:intron 25.0%
!!! TTGAACAGTTTCTTTTTTCT+TGG + tig0023889:6728-6747 Msa1412330:intron 25.0%
! ATTCAATTCCTCAAATTACT+TGG - tig0023889:6797-6816 Msa1412340:intron 25.0%
!!! TTTACCTTAGATTTTGAGAA+TGG - tig0023889:6859-6878 Msa1412340:intron 25.0%
! AAAAAAAACTTCTGTAGGTT+TGG + tig0023889:6928-6947 Msa1412330:intron 25.0%
! TATAATACAAAATGTGGCTT+AGG + tig0023889:7186-7205 Msa1412330:intron 25.0%
! TAATACATTGGTATACCAAA+TGG - tig0023889:7474-7493 Msa1412340:intron 25.0%
! ATTTGGTATACCAATGTATT+AGG + tig0023889:7473-7492 Msa1412330:intron 25.0%
!!! AGATTTTAGCACAATATGTA+CGG - tig0023889:7836-7855 Msa1412340:intron 25.0%
! AATCTGATTGAATGTGAAAT+AGG + tig0023889:7851-7870 Msa1412330:intron 25.0%
! ATCTGATTGAATGTGAAATA+GGG + tig0023889:7852-7871 Msa1412330:intron 25.0%
! TGACATTGACAAATAATACA+GGG - tig0023889:8264-8283 Msa1412340:intron 25.0%
! TTGACATTGACAAATAATAC+AGG - tig0023889:8265-8284 Msa1412340:intron 25.0%
CAATCTAATATTGCAAGTTG+GGG - tig0023889:3923-3942 None:intergenic 30.0%
TATTAGATTGAACATGTCGA+TGG + tig0023889:3933-3952 Msa1412330:five_prime_UTR 30.0%
GAGTTATCTGAAAAAACAAG+AGG + tig0023889:3962-3981 Msa1412330:five_prime_UTR 30.0%
! AATAACAGTAGCTATCGATT+TGG + tig0023889:4091-4110 Msa1412330:CDS 30.0%
! TTTAACTTATCCGTTCTATC+TGG + tig0023889:4284-4303 Msa1412330:intron 30.0%
AAGTCCTACATTTCTTGTAA+AGG + tig0023889:4624-4643 Msa1412330:intron 30.0%
TCTTCCTTTACAAGAAATGT+AGG - tig0023889:4631-4650 None:intergenic 30.0%
ACATTTCTTGTAAAGGAAGA+AGG + tig0023889:4631-4650 Msa1412330:intron 30.0%
! CGTCATTAACTATGGTTTTT+AGG + tig0023889:4738-4757 Msa1412330:intron 30.0%
AATCGTGATTAATGACATGT+AGG + tig0023889:4851-4870 Msa1412330:intron 30.0%
ATCGTGATTAATGACATGTA+GGG + tig0023889:4852-4871 Msa1412330:intron 30.0%
ACTACATTTGCAATTGCAAA+TGG - tig0023889:5351-5370 None:intergenic 30.0%
TGTTCTGTATAGAGGAAAAA+AGG - tig0023889:5491-5510 None:intergenic 30.0%
! ACTACTAGAATTGTTGATTG+AGG + tig0023889:5525-5544 Msa1412330:intron 30.0%
! CTACTAGAATTGTTGATTGA+GGG + tig0023889:5526-5545 Msa1412330:intron 30.0%
! GTTCATATTTAAAGCCGAAA+TGG + tig0023889:5553-5572 Msa1412330:intron 30.0%
ATGTTGAGAGAAAATCATTC+AGG - tig0023889:5638-5657 None:intergenic 30.0%
! TGTCATGAATTTGTTCCATA+AGG - tig0023889:5782-5801 None:intergenic 30.0%
TAAACAACACCTGAAAGAAT+AGG - tig0023889:5852-5871 None:intergenic 30.0%
GATTGAATTTGGACAAAATG+AGG + tig0023889:5922-5941 Msa1412330:intron 30.0%
CATTTAGGGGACATTTAAAT+TGG + tig0023889:5961-5980 Msa1412330:intron 30.0%
AAATCTGGTCTATTAGGAAT+TGG + tig0023889:6166-6185 Msa1412330:intron 30.0%
GCAAAATTCTGAATGTATTG+TGG - tig0023889:6298-6317 None:intergenic 30.0%
AGTGAATGATTGTAAAAGGA+AGG + tig0023889:6533-6552 Msa1412330:intron 30.0%
!! ATGTTTTTGTGGTGGTTAAT+TGG - tig0023889:6693-6712 Msa1412340:intron 30.0%
!! TAAGAATGATGTTTTTGTGG+TGG - tig0023889:6701-6720 Msa1412340:intron 30.0%
!! ATTTTGAGAATGGTTAGAGA+TGG - tig0023889:6849-6868 Msa1412340:intron 30.0%
CTAACCATTCTCAAAATCTA+AGG + tig0023889:6852-6871 Msa1412330:intron 30.0%
!! GATAAGTTTGCTGTGTTTAA+AGG + tig0023889:7210-7229 Msa1412330:intron 30.0%
AAACTAAGACTGTAAGTTAG+TGG + tig0023889:7316-7335 Msa1412330:intron 30.0%
AGTCTACATTCAGATAGAAA+GGG - tig0023889:7419-7438 Msa1412340:intron 30.0%
AAGTCTACATTCAGATAGAA+AGG - tig0023889:7420-7439 Msa1412340:intron 30.0%
TTAGAAACAAAACTGCCATT+TGG + tig0023889:7456-7475 Msa1412330:intron 30.0%
TGCAATCATAATGTCTTCTA+TGG + tig0023889:7750-7769 Msa1412330:intron 30.0%
TCTGATTGAATGTGAAATAG+GGG + tig0023889:7853-7872 Msa1412330:intron 30.0%
GGTTCTGCATATGAAATTAA+TGG + tig0023889:7874-7893 Msa1412330:intron 30.0%
TTGAAATGAATTGCAGGTAT+TGG + tig0023889:7901-7920 Msa1412330:intron 30.0%
TGATTTATATATCCGGTATG+CGG - tig0023889:7978-7997 Msa1412340:intron 30.0%
CAAAATTATTCAGTGACAGA+TGG + tig0023889:8095-8114 Msa1412330:three_prime_UTR 30.0%
TAAGATCAAAAGCAACATCA+AGG - tig0023889:8150-8169 Msa1412340:intron 30.0%
TGATCTTATCTGTGTAACTT+TGG + tig0023889:8162-8181 Msa1412330:three_prime_UTR 30.0%
TTAATGTATCAGTATGCAGT+TGG - tig0023889:8231-8250 Msa1412340:intron 30.0%
TTGACAAATAATACAGGGAA+AGG - tig0023889:8259-8278 Msa1412340:intron 30.0%
!! ATTTTGGGAGTAGAACAACA+TGG - tig0023889:4043-4062 None:intergenic 35.0%
ACTCTTGAATTTGACGGAAA+CGG - tig0023889:4067-4086 None:intergenic 35.0%
!! AAGTTGTTTCTACAACGTTG+AGG - tig0023889:4150-4169 None:intergenic 35.0%
!! TCTTGAAGTTCAAGTTGAAG+TGG - tig0023889:4190-4209 None:intergenic 35.0%
! TACTAGAGTACCAGATAGAA+CGG - tig0023889:4297-4316 None:intergenic 35.0%
AAGGATTATAGCTATGGCTT+TGG + tig0023889:4389-4408 Msa1412330:intron 35.0%
GTTGAGGTAGTTCAAATTGT+TGG + tig0023889:4570-4589 Msa1412330:intron 35.0%
!! GTTCAAATTGTTGGTGTTGT+TGG + tig0023889:4579-4598 Msa1412330:intron 35.0%
ACCAACCAAGACTATATACA+TGG + tig0023889:4656-4675 Msa1412330:intron 35.0%
! TCCATGTATATAGTCTTGGT+TGG - tig0023889:4660-4679 None:intergenic 35.0%
AGAGTCCATGTATATAGTCT+TGG - tig0023889:4664-4683 None:intergenic 35.0%
TGATTAATGACATGTAGGGA+CGG + tig0023889:4856-4875 Msa1412330:intron 35.0%
AGCAAATTTCGACAACAATC+TGG - tig0023889:5003-5022 None:intergenic 35.0%
GCGCTTAAACACTATACATT+CGG + tig0023889:5263-5282 Msa1412330:intron 35.0%
TTGTCACAAAACACCATGAA+TGG + tig0023889:5596-5615 Msa1412330:intron 35.0%
!! AATTTGCTTTTAAGCTCCAG+CGG - tig0023889:5817-5836 None:intergenic 35.0%
ATGCTCTTACCTATTCTTTC+AGG + tig0023889:5840-5859 Msa1412330:intron 35.0%
TGTTTATCATGGAGAGCTTA+TGG - tig0023889:6088-6107 None:intergenic 35.0%
AATGCCAAATGGTCAAAATC+TGG + tig0023889:6151-6170 Msa1412330:intron 35.0%
!! TAGACCAGATTTTGACCATT+TGG - tig0023889:6158-6177 None:intergenic 35.0%
TGGTCAAAATCTGGTCTATT+AGG + tig0023889:6160-6179 Msa1412330:intron 35.0%
TGGTCTATTAGGAATTGGAT+TGG + tig0023889:6171-6190 Msa1412330:intron 35.0%
!! TGTGATGAGATTTTGATCAG+AGG - tig0023889:6202-6221 None:intergenic 35.0%
CAATTGTTGACAGCAAAAGA+TGG - tig0023889:6418-6437 None:intergenic 35.0%
ACAGCATCAACAACAACAAA+AGG - tig0023889:6472-6491 Msa1412340:intron 35.0%
ACAACCAATTCAGACATTGT+AGG + tig0023889:6769-6788 Msa1412330:intron 35.0%
TGTAGGTACCAAGTAATTTG+AGG + tig0023889:6786-6805 Msa1412330:intron 35.0%
CCTAGATTGTCTAAAAAGGA+TGG - tig0023889:7106-7125 Msa1412340:intron 35.0%
! CCATCCTTTTTAGACAATCT+AGG + tig0023889:7103-7122 Msa1412330:intron 35.0%
GAGGTATGTAACTAGAGAAT+GGG + tig0023889:7277-7296 Msa1412330:intron 35.0%
GACTGTAAGTTAGTGGAAAT+TGG + tig0023889:7323-7342 Msa1412330:intron 35.0%
GTCTACATTCAGATAGAAAG+GGG - tig0023889:7418-7437 Msa1412340:intron 35.0%
! GATTCGACAAAGTTTTACGT+TGG - tig0023889:7569-7588 Msa1412340:intron 35.0%
TTTGTCGAATCTCTATGACA+TGG + tig0023889:7578-7597 Msa1412330:intron 35.0%
ACATGGACCAAATACGATTA+TGG + tig0023889:7595-7614 Msa1412330:intron 35.0%
AATGGTATACAACAACAACC+AGG - tig0023889:7664-7683 Msa1412340:intron 35.0%
TTCTTGTTGCATGAGAACAA+TGG + tig0023889:7802-7821 Msa1412330:intron 35.0%
!!! GGCTTTTTGAAATGAATTGC+AGG + tig0023889:7895-7914 Msa1412330:intron 35.0%
AAATATTCTCAGAGCTTTCG+CGG - tig0023889:8003-8022 Msa1412340:intron 35.0%
GAAAAAACAAGAGGCCAAGA+AGG + tig0023889:3971-3990 Msa1412330:five_prime_UTR 40.0%
!! TGGTTTTGCTACTTCCTTCT+TGG - tig0023889:3988-4007 None:intergenic 40.0%
AGAAGGAAGTAGCAAAACCA+TGG + tig0023889:3988-4007 Msa1412330:exon 40.0%
!! TGGTTTTGCTAAGTACAACG+TGG - tig0023889:4023-4042 None:intergenic 40.0%
! TTTGACGGAAACGGGATTTT+GGG - tig0023889:4058-4077 None:intergenic 40.0%
! ATTTGACGGAAACGGGATTT+TGG - tig0023889:4059-4078 None:intergenic 40.0%
CTCTTGAATTTGACGGAAAC+GGG - tig0023889:4066-4085 None:intergenic 40.0%
! TAGACCAGCTTTCGGTTTTA+AGG - tig0023889:4119-4138 None:intergenic 40.0%
TTCTACAACGTTGAGGAAGT+GGG - tig0023889:4143-4162 None:intergenic 40.0%
TTTCTACAACGTTGAGGAAG+TGG - tig0023889:4144-4163 None:intergenic 40.0%
AAGTGGAAGTTGAATGTACG+AGG - tig0023889:4173-4192 None:intergenic 40.0%
!! TTATAGCTATGGCTTTGGTG+TGG + tig0023889:4394-4413 Msa1412330:CDS 40.0%
TAAAAAACTTACCATGCCCC+AGG - tig0023889:4463-4482 None:intergenic 40.0%
AAATATGTGGTTACATCCGG+TGG - tig0023889:4963-4982 None:intergenic 40.0%
!! ACTCTAGAGCTAGTCTTGTA+TGG + tig0023889:5081-5100 Msa1412330:intron 40.0%
GTAGCAGAGAAATACTTGCT+TGG - tig0023889:5297-5316 None:intergenic 40.0%
AGCAAGTATTTCTCTGCTAC+TGG + tig0023889:5297-5316 Msa1412330:intron 40.0%
TTGTTGTAGGTACCTCTACT+TGG + tig0023889:5401-5420 Msa1412330:intron 40.0%
TTATAACTCTGACTCCCTTG+AGG + tig0023889:5457-5476 Msa1412330:CDS 40.0%
AAAAGGCTTTCTCACCTCAA+GGG - tig0023889:5474-5493 None:intergenic 40.0%
AAAAAGGCTTTCTCACCTCA+AGG - tig0023889:5475-5494 None:intergenic 40.0%
CAAAACACCATGAATGGCTA+CGG + tig0023889:5602-5621 Msa1412330:intron 40.0%
AAAACTTCCGTAGCCATTCA+TGG - tig0023889:5612-5631 None:intergenic 40.0%
! CATTTTACTTGTCGCAGCAA+TGG + tig0023889:5667-5686 Msa1412330:intron 40.0%
GTGCAAGAAAAAGCAAAGCA+CGG + tig0023889:5886-5905 Msa1412330:intron 40.0%
TGCAAGAAAAAGCAAAGCAC+GGG + tig0023889:5887-5906 Msa1412330:intron 40.0%
TCAGGTAGAGGTTGCATTTA+GGG + tig0023889:5947-5966 Msa1412330:intron 40.0%
AACAGTATCACGAGTGCTTA+TGG - tig0023889:6008-6027 None:intergenic 40.0%
TTAGACAGCATATGAAGGAC+TGG - tig0023889:6127-6146 None:intergenic 40.0%
! TCGCTTTAGACAGCATATGA+AGG - tig0023889:6132-6151 None:intergenic 40.0%
! TGTCTAAAGCGAATGCCAAA+TGG + tig0023889:6140-6159 Msa1412330:intron 40.0%
ACAAAGCAAAGCTGAAAGCT+GGG + tig0023889:6318-6337 Msa1412330:intron 40.0%
TCACAACTAGGCAAATGAGA+TGG - tig0023889:6353-6372 None:intergenic 40.0%
CTCATTTGCCTAGTTGTGAA+AGG + tig0023889:6354-6373 Msa1412330:intron 40.0%
ATTTGCCTAGTTGTGAAAGG+CGG + tig0023889:6357-6376 Msa1412330:intron 40.0%
GCGGTTGGAGTTGAAATTAT+TGG + tig0023889:6376-6395 Msa1412330:intron 40.0%
AACAATTGTTGCCATCACCA+AGG + tig0023889:6430-6449 Msa1412330:intron 40.0%
ACAACAAAAGGAGGAGAAAC+CGG - tig0023889:6460-6479 Msa1412340:CDS 40.0%
GCATCAACAACAACAAAAGG+AGG - tig0023889:6469-6488 Msa1412340:intron 40.0%
ATTCACTCATTCCCAACCTT+AGG - tig0023889:6520-6539 Msa1412340:intron 40.0%
GGTACCTACAATGTCTGAAT+TGG - tig0023889:6776-6795 Msa1412340:intron 40.0%
ACTTCTGTAGGTTTGGATAC+AGG + tig0023889:6935-6954 Msa1412330:intron 40.0%
CAAAACTCTAGCACAGTTGT+CGG - tig0023889:6977-6996 Msa1412340:intron 40.0%
AAAAAGGATGGTGAGAGATG+TGG - tig0023889:7094-7113 Msa1412340:intron 40.0%
CAGGCCTAGATTGTCTAAAA+AGG - tig0023889:7110-7129 Msa1412340:intron 40.0%
ACTAGCACAGTTGAACAATC+AGG - tig0023889:7129-7148 Msa1412340:intron 40.0%
!! GGACATGGTTGATGAAAGAA+GGG - tig0023889:7253-7272 Msa1412340:intron 40.0%
!! AGGACATGGTTGATGAAAGA+AGG - tig0023889:7254-7273 Msa1412340:intron 40.0%
CTTTCATCAACCATGTCCTA+TGG + tig0023889:7255-7274 Msa1412330:intron 40.0%
TTACATACCTCCATAGGACA+TGG - tig0023889:7268-7287 Msa1412340:intron 40.0%
CTCTAGTTACATACCTCCAT+AGG - tig0023889:7274-7293 Msa1412340:intron 40.0%
! GGAGGTATGTAACTAGAGAA+TGG + tig0023889:7276-7295 Msa1412330:intron 40.0%
CAAGGCTATGCCTAATACAT+TGG - tig0023889:7486-7505 Msa1412340:intron 40.0%
TCTTCTTTCATCCTTGGCTT+GGG - tig0023889:7524-7543 Msa1412340:intron 40.0%
AAGCCAAGGATGAAAGAAGA+GGG + tig0023889:7524-7543 Msa1412330:intron 40.0%
TGAAAGAAGAGGGTTGTGTT+AGG + tig0023889:7534-7553 Msa1412330:intron 40.0%
GATTGCGCCATAATCGTATT+TGG - tig0023889:7605-7624 Msa1412340:intron 40.0%
! CTTTTCCCACTTAGTTGGAT+CGG - tig0023889:7640-7659 Msa1412340:intron 40.0%
CGCGGGATGATTTATATATC+CGG - tig0023889:7985-8004 Msa1412340:intron 40.0%
AATATTCTCAGAGCTTTCGC+GGG - tig0023889:8002-8021 Msa1412340:intron 40.0%
TATGCAGTTGGATTCTCTAG+TGG - tig0023889:8219-8238 Msa1412340:intron 40.0%
GGAACCTTAAAACCGAAAGC+TGG + tig0023889:4112-4131 Msa1412330:CDS 45.0%
AAGTGGGATAGACCAGCTTT+CGG - tig0023889:4127-4146 None:intergenic 45.0%
TTGATACCATTCAACGACGC+TGG - tig0023889:4257-4276 None:intergenic 45.0%
!! ATGGCTTTGGTGTGGCAATA+TGG + tig0023889:4402-4421 Msa1412330:CDS 45.0%
!! TGGCTTTGGTGTGGCAATAT+GGG + tig0023889:4403-4422 Msa1412330:CDS 45.0%
TGGCAATATGGGGAGAAATC+TGG + tig0023889:4414-4433 Msa1412330:CDS 45.0%
GGCAATATGGGGAGAAATCT+GGG + tig0023889:4415-4434 Msa1412330:CDS 45.0%
AGAAATCTGGGCATGAAGCT+TGG + tig0023889:4427-4446 Msa1412330:CDS 45.0%
!! GACTAGCTCTAGAGTAGCAA+TGG - tig0023889:5076-5095 None:intergenic 45.0%
ACACACACAGAGATGCAAAG+AGG - tig0023889:5237-5256 None:intergenic 45.0%
TTGTAGGTACCTCTACTTGG+TGG + tig0023889:5404-5423 Msa1412330:intron 45.0%
CAAAATGCTCCACCAAGTAG+AGG - tig0023889:5416-5435 None:intergenic 45.0%
! GAGCATTTTGTGCATGCACA+TGG + tig0023889:5426-5445 Msa1412330:CDS 45.0%
TCAACAACGTCTCGACCTTA+TGG + tig0023889:5764-5783 Msa1412330:intron 45.0%
GACAGTTTAAACTAAGCCGC+TGG + tig0023889:5798-5817 Msa1412330:intron 45.0%
GCAAGAAAAAGCAAAGCACG+GGG + tig0023889:5888-5907 Msa1412330:intron 45.0%
TTTGGACAAAATGAGGGCTC+AGG + tig0023889:5929-5948 Msa1412330:intron 45.0%
CTCAGGTAGAGGTTGCATTT+AGG + tig0023889:5946-5965 Msa1412330:intron 45.0%
CAGGTAGAGGTTGCATTTAG+GGG + tig0023889:5948-5967 Msa1412330:intron 45.0%
TCACGAGTGCTTATGGTAGT+AGG - tig0023889:6001-6020 None:intergenic 45.0%
CATTGTCATGATAGGCAGCT+TGG + tig0023889:6252-6271 Msa1412330:intron 45.0%
CACAAAGCAAAGCTGAAAGC+TGG + tig0023889:6317-6336 Msa1412330:intron 45.0%
CAGAAACAACACACTTCTGC+AGG + tig0023889:6887-6906 Msa1412330:intron 45.0%
GCACAGTTGTCGGAATCTTA+TGG - tig0023889:6967-6986 Msa1412340:intron 45.0%
GAAGGGATAACTATCTGCAC+AGG - tig0023889:7236-7255 Msa1412340:intron 45.0%
TCATCAACCATGTCCTATGG+AGG + tig0023889:7258-7277 Msa1412330:intron 45.0%
CTCTTCTTTCATCCTTGGCT+TGG - tig0023889:7525-7544 Msa1412340:intron 45.0%
CAAGCCAAGGATGAAAGAAG+AGG + tig0023889:7523-7542 Msa1412330:intron 45.0%
CAACCCTCTTCTTTCATCCT+TGG - tig0023889:7530-7549 Msa1412340:intron 45.0%
! AAGTTTTACGTTGGCCGTTG+AGG - tig0023889:7560-7579 Msa1412340:intron 45.0%
ACTTAGTTGGATCGGCTACA+TGG - tig0023889:7632-7651 Msa1412340:intron 45.0%
ATGTAGCCGATCCAACTAAG+TGG + tig0023889:7631-7650 Msa1412330:intron 45.0%
TGTAGCCGATCCAACTAAGT+GGG + tig0023889:7632-7651 Msa1412330:intron 45.0%
CGATCCAACTAAGTGGGAAA+AGG + tig0023889:7638-7657 Msa1412330:intron 45.0%
!! GGTATTGGTAGCTCTTCAAG+CGG + tig0023889:7916-7935 Msa1412330:intron 45.0%
CAAGCGGCACTAACTGTTAT+AGG + tig0023889:7932-7951 Msa1412330:CDS 45.0%
!!! TCTTTTTTTTTTTTTTTTTT+TGG + tig0023889:4910-4929 Msa1412330:intron 5.0%
!!! AATTTAAAATAAATGAAAAA+AGG - tig0023889:8329-8348 Msa1412340:intron 5.0%
GGCAAAGACAGTGCATTGGA+TGG - tig0023889:4214-4233 None:intergenic 50.0%
AGTGGGCAAAGACAGTGCAT+TGG - tig0023889:4218-4237 None:intergenic 50.0%
ATGCACTGTCTTTGCCCACT+TGG + tig0023889:4218-4237 Msa1412330:CDS 50.0%
TGCACTGTCTTTGCCCACTT+GGG + tig0023889:4219-4238 Msa1412330:CDS 50.0%
GAGACATGAACAGCCCAAGT+GGG - tig0023889:4235-4254 None:intergenic 50.0%
ATGTCTCCAGCGTCGTTGAA+TGG + tig0023889:4248-4267 Msa1412330:CDS 50.0%
! GGCTTTGGTGTGGCAATATG+GGG + tig0023889:4404-4423 Msa1412330:CDS 50.0%
ATCTGGGCATGAAGCTTGGA+AGG + tig0023889:4431-4450 Msa1412330:CDS 50.0%
TCTGGGCATGAAGCTTGGAA+GGG + tig0023889:4432-4451 Msa1412330:CDS 50.0%
AAGCTTGGAAGGGTCTTTCC+TGG + tig0023889:4442-4461 Msa1412330:CDS 50.0%
AGCTTGGAAGGGTCTTTCCT+GGG + tig0023889:4443-4462 Msa1412330:CDS 50.0%
AGAAAAAGCAAAGCACGGGG+TGG + tig0023889:5891-5910 Msa1412330:intron 50.0%
GAAAAAGCAAAGCACGGGGT+GGG + tig0023889:5892-5911 Msa1412330:intron 50.0%
AAAAAGCAAAGCACGGGGTG+GGG + tig0023889:5893-5912 Msa1412330:intron 50.0%
CAAAATGAGGGCTCAGGTAG+AGG + tig0023889:5935-5954 Msa1412330:intron 50.0%
TGTCATGATAGGCAGCTTGG+TGG + tig0023889:6255-6274 Msa1412330:intron 50.0%
! ATAGGCAGCTTGGTGGATGT+TGG + tig0023889:6262-6281 Msa1412330:intron 50.0%
CAAAGCTGAAAGCTGGGCTT+TGG + tig0023889:6324-6343 Msa1412330:intron 50.0%
TCCAACCGCCTTTCACAACT+AGG - tig0023889:6365-6384 None:intergenic 50.0%
ATTGTTGCCATCACCAAGGC+CGG + tig0023889:6434-6453 Msa1412330:intron 50.0%
CCTTCAATGGTCGTAGACAG+AGG - tig0023889:7363-7382 Msa1412340:intron 50.0%
CCTCTGTCTACGACCATTGA+AGG + tig0023889:7360-7379 Msa1412330:intron 50.0%
!! TTTCATCCTTGGCTTGGGAC+AGG - tig0023889:7519-7538 Msa1412340:intron 50.0%
AGGGTTGTGTTAGGCCTCAA+CGG + tig0023889:7543-7562 Msa1412330:intron 50.0%
! CAGGCCTTTTCCCACTTAGT+TGG - tig0023889:7645-7664 Msa1412340:intron 50.0%
CAACTAAGTGGGAAAAGGCC+TGG + tig0023889:7643-7662 Msa1412330:intron 50.0%
CAATGTGCATAGCCGCATAC+CGG + tig0023889:7963-7982 Msa1412330:CDS 50.0%
GGAGACATGAACAGCCCAAG+TGG - tig0023889:4236-4255 None:intergenic 55.0%
GCTTGGAAGGGTCTTTCCTG+GGG + tig0023889:4444-4463 Msa1412330:CDS 55.0%
AAAAGCAAAGCACGGGGTGG+GGG + tig0023889:5894-5913 Msa1412330:intron 55.0%
TGGGGGGGCAGGATTGAATT+TGG + tig0023889:5911-5930 Msa1412330:intron 55.0%
! GCAGCTTGGTGGATGTTGGT+TGG + tig0023889:6266-6285 Msa1412330:intron 55.0%
GCCTAGTTGTGAAAGGCGGT+TGG + tig0023889:6361-6380 Msa1412330:intron 55.0%
CAAAAGGAGGAGAAACCGGC+CGG - tig0023889:6456-6475 Msa1412340:CDS 55.0%
GAAGGGTCTTTCCTGGGGCA+TGG + tig0023889:4449-4468 Msa1412330:CDS 60.0%
AAAGCAAAGCACGGGGTGGG+GGG + tig0023889:5895-5914 Msa1412330:intron 60.0%
GGGACAGGCTACGCATAGCA+AGG - tig0023889:7504-7523 Msa1412340:intron 60.0%
CAACGTGGCTGCAGCAGCCA+TGG - tig0023889:4008-4027 None:intergenic 65.0%
AAGCAAAGCACGGGGTGGGG+GGG + tig0023889:5896-5915 Msa1412330:intron 65.0%
TTGCCATCACCAAGGCCGGC+CGG + tig0023889:6438-6457 Msa1412330:intron 65.0%
AAACCGGCCGGCCTTGGTGA+TGG - tig0023889:6444-6463 Msa1412340:CDS 65.0%
GCGTAGCCTGTCCCAAGCCA+AGG + tig0023889:7510-7529 Msa1412330:intron 65.0%
GAGGAGAAACCGGCCGGCCT+TGG - tig0023889:6450-6469 Msa1412340:CDS 70.0%
AAAGCACGGGGTGGGGGGGC+AGG + tig0023889:5900-5919 Msa1412330:intron 75.0%
Chromosome Type Strat End Strand Name
tig0023889 gene 3920 8410 3920 ID=Msa1412330;Name=Msa1412330
tig0023889 mRNA 3920 8410 3920 ID=Msa1412330-mRNA-1;Parent=Msa1412330;Name=Msa1412330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|0.66|1|4|386|172
tig0023889 exon 3920 4269 3920 ID=Msa1412330-mRNA-1:exon:20557;Parent=Msa1412330-mRNA-1
tig0023889 exon 4392 4470 4392 ID=Msa1412330-mRNA-1:exon:20558;Parent=Msa1412330-mRNA-1
tig0023889 exon 5410 5478 5410 ID=Msa1412330-mRNA-1:exon:20559;Parent=Msa1412330-mRNA-1
tig0023889 exon 7917 8410 7917 ID=Msa1412330-mRNA-1:exon:20560;Parent=Msa1412330-mRNA-1
tig0023889 five_prime_UTR 3920 4006 3920 ID=Msa1412330-mRNA-1:five_prime_utr;Parent=Msa1412330-mRNA-1
tig0023889 CDS 4007 4269 4007 ID=Msa1412330-mRNA-1:cds;Parent=Msa1412330-mRNA-1
tig0023889 CDS 4392 4470 4392 ID=Msa1412330-mRNA-1:cds;Parent=Msa1412330-mRNA-1
tig0023889 CDS 5410 5478 5410 ID=Msa1412330-mRNA-1:cds;Parent=Msa1412330-mRNA-1
tig0023889 CDS 7917 8024 7917 ID=Msa1412330-mRNA-1:cds;Parent=Msa1412330-mRNA-1
tig0023889 three_prime_UTR 8025 8410 8025 ID=Msa1412330-mRNA-1:three_prime_utr;Parent=Msa1412330-mRNA-1
Gene Sequence

>Msa1412330

ATGGCTGCTGCAGCCACGTTGTACTTAGCAAAACCATGTTGTTCTACTCCCAAAATCCCGTTTCCGTCAAATTCAAGAGTTTTCAATAACAGTAGCTATCGATTTGGAACCTTAAAACCGAAAGCTGGTCTATCCCACTTCCTCAACGTTGTAGAAACAACTTCCTCGTACATTCAACTTCCACTTCAACTTGAACTTCAAGAACCATCCAATGCACTGTCTTTGCCCACTTGGGCTGTTCATGTCTCCAGCGTCGTTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATATGGGGAGAAATCTGGGCATGAAGCTTGGAAGGGTCTTTCCTGGGGCATGGTACCTCTACTTGGTGGAGCATTTTGTGCATGCACATGGCATTTCTTTTATAACTCTGACTCCCTTGAGGTATTGGTAGCTCTTCAAGCGGCACTAACTGTTATAGGTAATATAACAATGTGCATAGCCGCATACCGGATATATAAATCATCCCGCGAAAGCTCTGAGAATATTTGA

Protein sequence

>Msa1412330

MAAAATLYLAKPCCSTPKIPFPSNSRVFNNSSYRFGTLKPKAGLSHFLNVVETTSSYIQLPLQLELQEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGHEAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTVIGNITMCIAAYRIYKSSRESSENI*