AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095890 MtrunA17_Chr5g0398491 95.930 172 7 0 1 172 1 172 3.14e-121 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095890 AT4G22830.1 81.905 105 19 0 63 167 82 186 1.51e-60 186
Msa0095890 AT4G22830.2 82.692 104 18 0 64 167 91 194 4.16e-60 186

Find 63 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCCTTCTTCATATAAA+AGG 0.122173 1_3:-1303263 None:intergenic
ATTTGACGGAAACGGGATTT+TGG 0.159414 1_3:-1298919 None:intergenic
ATGGCTTTGGTGTGGCAATA+TGG 0.236845 1_3:+1299268 Msa0095890:CDS
CAAGCGGCACTAACTGTTAT+AGG 0.288834 1_3:+1302798 Msa0095890:CDS
CTCTTGAATTTGACGGAAAC+GGG 0.296168 1_3:-1298926 None:intergenic
TGGCAATATGGGGAGAAATC+TGG 0.321722 1_3:+1299280 Msa0095890:CDS
AAGCTTGGAAGGGTCTTTCC+TGG 0.322451 1_3:+1299308 Msa0095890:CDS
TCAATCTAATATTGCAAGTT+GGG 0.342782 1_3:-1298784 None:intergenic
TGGCTTTGGTGTGGCAATAT+GGG 0.345301 1_3:+1299269 Msa0095890:CDS
AATAACAGTAGCTATCGATT+TGG 0.348207 1_3:+1298954 Msa0095890:CDS
CGCGGGATGATTTATATATC+CGG 0.376834 1_3:-1302848 None:intergenic
ATGCACTGTCTTTGCCCACT+TGG 0.377337 1_3:+1299081 Msa0095890:CDS
TTGTAAATCAGTAAAAGATT+AGG 0.381733 1_3:-1302941 None:intergenic
ACTCTTGAATTTGACGGAAA+CGG 0.400641 1_3:-1298927 None:intergenic
TGATCTTATCTGTGTAACTT+TGG 0.404034 1_3:+1303028 Msa0095890:three_prime_UTR
TTGAAAACTCTTGAATTTGA+CGG 0.404161 1_3:-1298933 None:intergenic
TTCAATCTAATATTGCAAGT+TGG 0.416584 1_3:-1298785 None:intergenic
AAGGATTATAGCTATGGCTT+TGG 0.426099 1_3:+1299255 Msa0095890:intron
AGCTTGGAAGGGTCTTTCCT+GGG 0.439797 1_3:+1299309 Msa0095890:CDS
AAGTGGGATAGACCAGCTTT+CGG 0.451603 1_3:-1298987 None:intergenic
GGCAATATGGGGAGAAATCT+GGG 0.453113 1_3:+1299281 Msa0095890:CDS
TGCACTGTCTTTGCCCACTT+GGG 0.453403 1_3:+1299082 Msa0095890:CDS
TTTGCCTTCTTCATATAAAA+GGG 0.458042 1_3:-1303262 None:intergenic
GAAGGGTCTTTCCTGGGGCA+TGG 0.465621 1_3:+1299315 Msa0095890:CDS
TTGACATTGACAAATAATAC+AGG 0.469573 1_3:-1303128 None:intergenic
TTTCTACAACGTTGAGGAAG+TGG 0.473835 1_3:-1299004 None:intergenic
TTGTTGTAGGTACCTCTACT+TGG 0.477528 1_3:+1300268 Msa0095890:intron
AGAAATCTGGGCATGAAGCT+TGG 0.487427 1_3:+1299293 Msa0095890:CDS
TTAATGTATCAGTATGCAGT+TGG 0.496794 1_3:-1303094 None:intergenic
CAAAATTATTCAGTGACAGA+TGG 0.507531 1_3:+1302961 Msa0095890:three_prime_UTR
TTGTAGGTACCTCTACTTGG+TGG 0.514763 1_3:+1300271 Msa0095890:intron
ATGTCTCCAGCGTCGTTGAA+TGG 0.515806 1_3:+1299111 Msa0095890:CDS
CAACGTGGCTGCAGCAGCCA+TGG 0.517662 1_3:-1298868 None:intergenic
ATCTGGGCATGAAGCTTGGA+AGG 0.518052 1_3:+1299297 Msa0095890:CDS
AATATTCTCAGAGCTTTCGC+GGG 0.537497 1_3:-1302865 None:intergenic
GGAACCTTAAAACCGAAAGC+TGG 0.539599 1_3:+1298975 Msa0095890:CDS
AAATATTCTCAGAGCTTTCG+CGG 0.544529 1_3:-1302866 None:intergenic
TCTTGAAGTTCAAGTTGAAG+TGG 0.545704 1_3:-1299050 None:intergenic
TAAGATCAAAAGCAACATCA+AGG 0.554859 1_3:-1303013 None:intergenic
CAATGTGCATAGCCGCATAC+CGG 0.555634 1_3:+1302829 Msa0095890:CDS
CAATCTAATATTGCAAGTTG+GGG 0.558435 1_3:-1298783 None:intergenic
GCTTGGAAGGGTCTTTCCTG+GGG 0.562740 1_3:+1299310 Msa0095890:CDS
TTGACAAATAATACAGGGAA+AGG 0.566224 1_3:-1303122 None:intergenic
TTCTACAACGTTGAGGAAGT+GGG 0.570080 1_3:-1299003 None:intergenic
TATGCAGTTGGATTCTCTAG+TGG 0.587306 1_3:-1303082 None:intergenic
GGCTTTGGTGTGGCAATATG+GGG 0.589415 1_3:+1299270 Msa0095890:CDS
AGTGGGCAAAGACAGTGCAT+TGG 0.590819 1_3:-1299078 None:intergenic
TTATAACTCTGACTCCCTTG+AGG 0.597717 1_3:+1300324 Msa0095890:CDS
GGCAAAGACAGTGCATTGGA+TGG 0.598751 1_3:-1299074 None:intergenic
TATTAGATTGAACATGTCGA+TGG 0.599266 1_3:+1298796 Msa0095890:five_prime_UTR
TTGATACCATTCAACGACGC+TGG 0.610070 1_3:-1299117 None:intergenic
AAAAGGCTTTCTCACCTCAA+GGG 0.622988 1_3:-1300338 None:intergenic
GGAGACATGAACAGCCCAAG+TGG 0.630578 1_3:-1299096 None:intergenic
CAAAATGCTCCACCAAGTAG+AGG 0.635947 1_3:-1300280 None:intergenic
AAGTTGTTTCTACAACGTTG+AGG 0.647322 1_3:-1299010 None:intergenic
TTATAGCTATGGCTTTGGTG+TGG 0.649963 1_3:+1299260 Msa0095890:CDS
AGAAGGAAGTAGCAAAACCA+TGG 0.662724 1_3:+1298851 Msa0095890:exon
AAGTGGAAGTTGAATGTACG+AGG 0.666941 1_3:-1299033 None:intergenic
TCTGGGCATGAAGCTTGGAA+GGG 0.672398 1_3:+1299298 Msa0095890:CDS
GAGACATGAACAGCCCAAGT+GGG 0.672772 1_3:-1299095 None:intergenic
TGATTTATATATCCGGTATG+CGG 0.678633 1_3:-1302841 None:intergenic
GGTATTGGTAGCTCTTCAAG+CGG 0.681354 1_3:+1302782 Msa0095890:intron
TGACATTGACAAATAATACA+GGG 0.685502 1_3:-1303127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAAAAAAAAAAAA+AGG + chr1_3:1299236-1299255 Msa0095890:intron 0.0%
!!! TTTTTTTTTAATTTATTTTT+TGG - chr1_3:1300054-1300073 None:intergenic 0.0%
!!! ATTTTACTGTTATTATTATT+AGG + chr1_3:1299372-1299391 Msa0095890:intron 10.0%
!!! AAAAAATTGATTTATCATTT+TGG + chr1_3:1300069-1300088 Msa0095890:intron 10.0%
!!! AAAAATTGATTTATCATTTT+GGG + chr1_3:1300070-1300089 Msa0095890:intron 10.0%
!!! ATATAAATAATCTCTTTTTA+TGG - chr1_3:1301099-1301118 None:intergenic 10.0%
!!! TTAAAGACATTTTAAATATG+TGG - chr1_3:1299843-1299862 None:intergenic 15.0%
!!! AAAATTGATTTATCATTTTG+GGG + chr1_3:1300071-1300090 Msa0095890:intron 15.0%
!!! TACAATTTGTTTCATTAATT+TGG + chr1_3:1301682-1301701 Msa0095890:intron 15.0%
!!! TTTTTTTTTTCTTTTTCTGA+AGG - chr1_3:1301783-1301802 None:intergenic 15.0%
!! TATATATAATATCAGTACAA+TGG - chr1_3:1302548-1302567 None:intergenic 15.0%
!!! AATACAGAAAATTTGTTTTT+TGG + chr1_3:1302578-1302597 Msa0095890:intron 15.0%
!! TTAAAATACTAGAGTAGTAT+TGG - chr1_3:1299198-1299217 None:intergenic 20.0%
!! AAAAAAAAGGATTATAGCTA+TGG + chr1_3:1299249-1299268 Msa0095890:intron 20.0%
!! TAAAAAATTGAGTATAGTTG+AGG + chr1_3:1299420-1299439 Msa0095890:intron 20.0%
!! TCATGTATATACAATTTGAA+TGG + chr1_3:1299661-1299680 Msa0095890:intron 20.0%
!! TACAACAATTAGATAACATA+GGG - chr1_3:1300256-1300275 None:intergenic 20.0%
!!! ATAATCTCTTTTTATGGAAT+TGG - chr1_3:1301093-1301112 None:intergenic 20.0%
!! TTTATATTCATTGTCATGAT+AGG + chr1_3:1301112-1301131 Msa0095890:intron 20.0%
!!! CTTAGGTATAATATAGATTT+TGG - chr1_3:1301371-1301390 None:intergenic 20.0%
!! CAAAATCTATATTATACCTA+AGG + chr1_3:1301369-1301388 Msa0095890:intron 20.0%
!!! TAACAGTTTTAATTTCATGA+AGG - chr1_3:1301449-1301468 None:intergenic 20.0%
!!! AAATAAGAATGATGTTTTTG+TGG - chr1_3:1301572-1301591 None:intergenic 20.0%
!! AAGAAAAAAAAAACTTCTGT+AGG + chr1_3:1301790-1301809 Msa0095890:intron 20.0%
!! TATGACTATAATACAAAATG+TGG + chr1_3:1302047-1302066 Msa0095890:intron 20.0%
!!! AATTATTAGTTTTCCTTCAA+TGG - chr1_3:1302243-1302262 None:intergenic 20.0%
!! ACTAATAATTAAAGACGAAA+TGG + chr1_3:1302253-1302272 Msa0095890:intron 20.0%
!! CTAATAATTAAAGACGAAAT+GGG + chr1_3:1302254-1302273 Msa0095890:intron 20.0%
!! TTGTAAATCAGTAAAAGATT+AGG - chr1_3:1302944-1302963 None:intergenic 20.0%
! TCAATCTAATATTGCAAGTT+GGG - chr1_3:1298787-1298806 None:intergenic 25.0%
! TTCAATCTAATATTGCAAGT+TGG - chr1_3:1298788-1298807 None:intergenic 25.0%
! TTGAAAACTCTTGAATTTGA+CGG - chr1_3:1298936-1298955 None:intergenic 25.0%
!! TCAAAATTGCGTTTGATTTA+TGG - chr1_3:1299583-1299602 None:intergenic 25.0%
!! ATTTTGAACGTCATTAACTA+TGG + chr1_3:1299596-1299615 Msa0095890:intron 25.0%
! TTATATTCATTAATCACCAC+CGG + chr1_3:1299811-1299830 Msa0095890:intron 25.0%
! TTTAAATATGTGGTTACATC+CGG - chr1_3:1299833-1299852 None:intergenic 25.0%
! GTATCTAAACATTATACGTT+TGG - chr1_3:1299981-1300000 None:intergenic 25.0%
! CTACAACAATTAGATAACAT+AGG - chr1_3:1300257-1300276 None:intergenic 25.0%
! CTATGTTATCTAATTGTTGT+AGG + chr1_3:1300255-1300274 Msa0095890:intron 25.0%
! TTAATAGATGTTCTGTATAG+AGG - chr1_3:1300366-1300385 None:intergenic 25.0%
!!! ATTTCGGCTTTAAATATGAA+CGG - chr1_3:1300421-1300440 None:intergenic 25.0%
! TTATACAAGAAGATCCATTT+CGG - chr1_3:1300437-1300456 None:intergenic 25.0%
! ATTGAATTTGGACAAAATGA+GGG + chr1_3:1300791-1300810 Msa0095890:intron 25.0%
! CATCATATAAGTGTTTATCA+TGG - chr1_3:1300967-1300986 None:intergenic 25.0%
! ATCTATATTATACCTAAGGT+TGG + chr1_3:1301373-1301392 Msa0095890:intron 25.0%
! TCTATATTATACCTAAGGTT+GGG + chr1_3:1301374-1301393 Msa0095890:intron 25.0%
! AATGAGTGAATGATTGTAAA+AGG + chr1_3:1301397-1301416 Msa0095890:intron 25.0%
!!! TTTTGTAACTTGCTTCTTTT+TGG + chr1_3:1301535-1301554 Msa0095890:intron 25.0%
!! TTTTGAACAGTTTCTTTTCT+TGG + chr1_3:1301594-1301613 Msa0095890:intron 25.0%
! ATTCAATTCCTCAAATTACT+TGG - chr1_3:1301663-1301682 None:intergenic 25.0%
!!! TTTACCTTAGATTTTGAGAA+TGG - chr1_3:1301725-1301744 None:intergenic 25.0%
! AAAAAAAACTTCTGTAGGTT+TGG + chr1_3:1301795-1301814 Msa0095890:intron 25.0%
! TATAATACAAAATGTGGCTT+AGG + chr1_3:1302053-1302072 Msa0095890:intron 25.0%
! TAATACATTGGTATACCAAA+TGG - chr1_3:1302341-1302360 None:intergenic 25.0%
! ATTTGGTATACCAATGTATT+AGG + chr1_3:1302340-1302359 Msa0095890:intron 25.0%
!!! AGATTTTAGCACAATATGTA+CGG - chr1_3:1302702-1302721 None:intergenic 25.0%
! AATCTGATTGAATGTGAAAT+AGG + chr1_3:1302717-1302736 Msa0095890:intron 25.0%
! ATCTGATTGAATGTGAAATA+GGG + chr1_3:1302718-1302737 Msa0095890:intron 25.0%
! TGACATTGACAAATAATACA+GGG - chr1_3:1303130-1303149 None:intergenic 25.0%
! TTGACATTGACAAATAATAC+AGG - chr1_3:1303131-1303150 None:intergenic 25.0%
CAATCTAATATTGCAAGTTG+GGG - chr1_3:1298786-1298805 None:intergenic 30.0%
TATTAGATTGAACATGTCGA+TGG + chr1_3:1298796-1298815 Msa0095890:five_prime_UTR 30.0%
GAGTTATCTGAAAAAACAAG+AGG + chr1_3:1298825-1298844 Msa0095890:five_prime_UTR 30.0%
! AATAACAGTAGCTATCGATT+TGG + chr1_3:1298954-1298973 Msa0095890:CDS 30.0%
! TTTAACTTATCCGTTCTATC+TGG + chr1_3:1299147-1299166 Msa0095890:intron 30.0%
AAGTCCTACATTTCTTGTAA+AGG + chr1_3:1299490-1299509 Msa0095890:intron 30.0%
TCTTCCTTTACAAGAAATGT+AGG - chr1_3:1299497-1299516 None:intergenic 30.0%
ACATTTCTTGTAAAGGAAGA+AGG + chr1_3:1299497-1299516 Msa0095890:intron 30.0%
! CGTCATTAACTATGGTTTTT+AGG + chr1_3:1299604-1299623 Msa0095890:intron 30.0%
AATCGTGATTAATGACATGT+AGG + chr1_3:1299717-1299736 Msa0095890:intron 30.0%
ATCGTGATTAATGACATGTA+GGG + chr1_3:1299718-1299737 Msa0095890:intron 30.0%
ACTACATTTGCAATTGCAAA+TGG - chr1_3:1300218-1300237 None:intergenic 30.0%
TGTTCTGTATAGAGGAAAAA+AGG - chr1_3:1300358-1300377 None:intergenic 30.0%
! ACTACTAGAATTGTTGATTG+AGG + chr1_3:1300392-1300411 Msa0095890:intron 30.0%
! CTACTAGAATTGTTGATTGA+GGG + chr1_3:1300393-1300412 Msa0095890:intron 30.0%
! GTTCATATTTAAAGCCGAAA+TGG + chr1_3:1300420-1300439 Msa0095890:intron 30.0%
ATGTTGAGAGAAAATCATTC+AGG - chr1_3:1300506-1300525 None:intergenic 30.0%
! TGTCATGAATTTGTTCCATA+AGG - chr1_3:1300650-1300669 None:intergenic 30.0%
TAAACAACACCTGAAAGAAT+AGG - chr1_3:1300720-1300739 None:intergenic 30.0%
GATTGAATTTGGACAAAATG+AGG + chr1_3:1300790-1300809 Msa0095890:intron 30.0%
CATTTAGGGGACATTTAAAT+TGG + chr1_3:1300829-1300848 Msa0095890:intron 30.0%
AAATCTGGTCTATTAGGAAT+TGG + chr1_3:1301034-1301053 Msa0095890:intron 30.0%
GCAAAATTCTGAATGTATTG+TGG - chr1_3:1301166-1301185 None:intergenic 30.0%
AGTGAATGATTGTAAAAGGA+AGG + chr1_3:1301401-1301420 Msa0095890:intron 30.0%
!! ATGTTTTTGTGGTGGTTAAT+TGG - chr1_3:1301561-1301580 None:intergenic 30.0%
!! TAAGAATGATGTTTTTGTGG+TGG - chr1_3:1301569-1301588 None:intergenic 30.0%
!! ATTTTGAGAATGGTTAGAGA+TGG - chr1_3:1301715-1301734 None:intergenic 30.0%
CTAACCATTCTCAAAATCTA+AGG + chr1_3:1301718-1301737 Msa0095890:intron 30.0%
!! GATAAGTTTGCTGTGTTTAA+AGG + chr1_3:1302077-1302096 Msa0095890:intron 30.0%
AAACTAAGACTGTAAGTTAG+TGG + chr1_3:1302183-1302202 Msa0095890:intron 30.0%
AGTCTACATTCAGATAGAAA+GGG - chr1_3:1302286-1302305 None:intergenic 30.0%
AAGTCTACATTCAGATAGAA+AGG - chr1_3:1302287-1302306 None:intergenic 30.0%
TTAGAAACAAAACTGCCATT+TGG + chr1_3:1302323-1302342 Msa0095890:intron 30.0%
TGCAATCATAATGTCTTCTA+TGG + chr1_3:1302616-1302635 Msa0095890:intron 30.0%
TCTGATTGAATGTGAAATAG+GGG + chr1_3:1302719-1302738 Msa0095890:intron 30.0%
GGTTCTGCATATGAAATTAA+TGG + chr1_3:1302740-1302759 Msa0095890:intron 30.0%
TTGAAATGAATTGCAGGTAT+TGG + chr1_3:1302767-1302786 Msa0095890:intron 30.0%
TGATTTATATATCCGGTATG+CGG - chr1_3:1302844-1302863 None:intergenic 30.0%
CAAAATTATTCAGTGACAGA+TGG + chr1_3:1302961-1302980 Msa0095890:three_prime_UTR 30.0%
TAAGATCAAAAGCAACATCA+AGG - chr1_3:1303016-1303035 None:intergenic 30.0%
TGATCTTATCTGTGTAACTT+TGG + chr1_3:1303028-1303047 Msa0095890:three_prime_UTR 30.0%
TTAATGTATCAGTATGCAGT+TGG - chr1_3:1303097-1303116 None:intergenic 30.0%
TTGACAAATAATACAGGGAA+AGG - chr1_3:1303125-1303144 None:intergenic 30.0%
!! ATTTTGGGAGTAGAACAACA+TGG - chr1_3:1298906-1298925 None:intergenic 35.0%
ACTCTTGAATTTGACGGAAA+CGG - chr1_3:1298930-1298949 None:intergenic 35.0%
!! AAGTTGTTTCTACAACGTTG+AGG - chr1_3:1299013-1299032 None:intergenic 35.0%
!! TCTTGAAGTTCAAGTTGAAG+TGG - chr1_3:1299053-1299072 None:intergenic 35.0%
! TACTAGAGTACCAGATAGAA+CGG - chr1_3:1299160-1299179 None:intergenic 35.0%
AAGGATTATAGCTATGGCTT+TGG + chr1_3:1299255-1299274 Msa0095890:intron 35.0%
GTTGAGGTAGTTCAAATTGT+TGG + chr1_3:1299436-1299455 Msa0095890:intron 35.0%
!! GTTCAAATTGTTGGTGTTGT+TGG + chr1_3:1299445-1299464 Msa0095890:intron 35.0%
ACCAACCAAGACTATATACA+TGG + chr1_3:1299522-1299541 Msa0095890:intron 35.0%
! TCCATGTATATAGTCTTGGT+TGG - chr1_3:1299526-1299545 None:intergenic 35.0%
AGAGTCCATGTATATAGTCT+TGG - chr1_3:1299530-1299549 None:intergenic 35.0%
TGATTAATGACATGTAGGGA+CGG + chr1_3:1299722-1299741 Msa0095890:intron 35.0%
AGCAAATTTCGACAACAATC+TGG - chr1_3:1299870-1299889 None:intergenic 35.0%
GCGCTTAAACACTATACATT+CGG + chr1_3:1300130-1300149 Msa0095890:intron 35.0%
TTGTCACAAAACACCATGAA+TGG + chr1_3:1300463-1300482 Msa0095890:intron 35.0%
!! AATTTGCTTTTAAGCTCCAG+CGG - chr1_3:1300685-1300704 None:intergenic 35.0%
ATGCTCTTACCTATTCTTTC+AGG + chr1_3:1300708-1300727 Msa0095890:intron 35.0%
TGTTTATCATGGAGAGCTTA+TGG - chr1_3:1300956-1300975 None:intergenic 35.0%
AATGCCAAATGGTCAAAATC+TGG + chr1_3:1301019-1301038 Msa0095890:intron 35.0%
!! TAGACCAGATTTTGACCATT+TGG - chr1_3:1301026-1301045 None:intergenic 35.0%
TGGTCAAAATCTGGTCTATT+AGG + chr1_3:1301028-1301047 Msa0095890:intron 35.0%
TGGTCTATTAGGAATTGGAT+TGG + chr1_3:1301039-1301058 Msa0095890:intron 35.0%
!! TGTGATGAGATTTTGATCAG+AGG - chr1_3:1301070-1301089 None:intergenic 35.0%
CAATTGTTGACAGCAAAAGA+TGG - chr1_3:1301286-1301305 None:intergenic 35.0%
ACAGCATCAACAACAACAAA+AGG - chr1_3:1301340-1301359 None:intergenic 35.0%
ACAACCAATTCAGACATTGT+AGG + chr1_3:1301635-1301654 Msa0095890:intron 35.0%
TGTAGGTACCAAGTAATTTG+AGG + chr1_3:1301652-1301671 Msa0095890:intron 35.0%
CCTAGATTGTCTAAAAAGGA+TGG - chr1_3:1301973-1301992 None:intergenic 35.0%
! CCATCCTTTTTAGACAATCT+AGG + chr1_3:1301970-1301989 Msa0095890:intron 35.0%
GAGGTATGTAACTAGAGAAT+GGG + chr1_3:1302144-1302163 Msa0095890:intron 35.0%
GACTGTAAGTTAGTGGAAAT+TGG + chr1_3:1302190-1302209 Msa0095890:intron 35.0%
GTCTACATTCAGATAGAAAG+GGG - chr1_3:1302285-1302304 None:intergenic 35.0%
! GATTCGACAAAGTTTTACGT+TGG - chr1_3:1302435-1302454 None:intergenic 35.0%
TTTGTCGAATCTCTATGACA+TGG + chr1_3:1302444-1302463 Msa0095890:intron 35.0%
ACATGGACCAAATACGATTA+TGG + chr1_3:1302461-1302480 Msa0095890:intron 35.0%
AATGGTATACAACAACAACC+AGG - chr1_3:1302530-1302549 None:intergenic 35.0%
TTCTTGTTGCATGAGAACAA+TGG + chr1_3:1302668-1302687 Msa0095890:intron 35.0%
!!! GGCTTTTTGAAATGAATTGC+AGG + chr1_3:1302761-1302780 Msa0095890:intron 35.0%
AAATATTCTCAGAGCTTTCG+CGG - chr1_3:1302869-1302888 None:intergenic 35.0%
GAAAAAACAAGAGGCCAAGA+AGG + chr1_3:1298834-1298853 Msa0095890:five_prime_UTR 40.0%
!! TGGTTTTGCTACTTCCTTCT+TGG - chr1_3:1298851-1298870 None:intergenic 40.0%
AGAAGGAAGTAGCAAAACCA+TGG + chr1_3:1298851-1298870 Msa0095890:exon 40.0%
!! TGGTTTTGCTAAGTACAACG+TGG - chr1_3:1298886-1298905 None:intergenic 40.0%
! TTTGACGGAAACGGGATTTT+GGG - chr1_3:1298921-1298940 None:intergenic 40.0%
! ATTTGACGGAAACGGGATTT+TGG - chr1_3:1298922-1298941 None:intergenic 40.0%
CTCTTGAATTTGACGGAAAC+GGG - chr1_3:1298929-1298948 None:intergenic 40.0%
! TAGACCAGCTTTCGGTTTTA+AGG - chr1_3:1298982-1299001 None:intergenic 40.0%
TTCTACAACGTTGAGGAAGT+GGG - chr1_3:1299006-1299025 None:intergenic 40.0%
TTTCTACAACGTTGAGGAAG+TGG - chr1_3:1299007-1299026 None:intergenic 40.0%
AAGTGGAAGTTGAATGTACG+AGG - chr1_3:1299036-1299055 None:intergenic 40.0%
!! TTATAGCTATGGCTTTGGTG+TGG + chr1_3:1299260-1299279 Msa0095890:CDS 40.0%
TAAAAAACTTACCATGCCCC+AGG - chr1_3:1299329-1299348 None:intergenic 40.0%
AAATATGTGGTTACATCCGG+TGG - chr1_3:1299830-1299849 None:intergenic 40.0%
!! ACTCTAGAGCTAGTCTTGTA+TGG + chr1_3:1299948-1299967 Msa0095890:intron 40.0%
GTAGCAGAGAAATACTTGCT+TGG - chr1_3:1300164-1300183 None:intergenic 40.0%
AGCAAGTATTTCTCTGCTAC+TGG + chr1_3:1300164-1300183 Msa0095890:intron 40.0%
TTGTTGTAGGTACCTCTACT+TGG + chr1_3:1300268-1300287 Msa0095890:intron 40.0%
TTATAACTCTGACTCCCTTG+AGG + chr1_3:1300324-1300343 Msa0095890:CDS 40.0%
AAAAGGCTTTCTCACCTCAA+GGG - chr1_3:1300341-1300360 None:intergenic 40.0%
AAAAAGGCTTTCTCACCTCA+AGG - chr1_3:1300342-1300361 None:intergenic 40.0%
CAAAACACCATGAATGGCTA+CGG + chr1_3:1300469-1300488 Msa0095890:intron 40.0%
! CATTTTACTTGTCGCAGCAA+TGG + chr1_3:1300535-1300554 Msa0095890:intron 40.0%
GTGCAAGAAAAAGCAAAGCA+CGG + chr1_3:1300754-1300773 Msa0095890:intron 40.0%
TGCAAGAAAAAGCAAAGCAC+GGG + chr1_3:1300755-1300774 Msa0095890:intron 40.0%
TCAGGTAGAGGTTGCATTTA+GGG + chr1_3:1300815-1300834 Msa0095890:intron 40.0%
AACAGTATCACGAGTGCTTA+TGG - chr1_3:1300876-1300895 None:intergenic 40.0%
TTAGACAGCATATGAAGGAC+TGG - chr1_3:1300995-1301014 None:intergenic 40.0%
! TCGCTTTAGACAGCATATGA+AGG - chr1_3:1301000-1301019 None:intergenic 40.0%
! TGTCTAAAGCGAATGCCAAA+TGG + chr1_3:1301008-1301027 Msa0095890:intron 40.0%
ACAAAGCAAAGCTGAAAGCT+GGG + chr1_3:1301186-1301205 Msa0095890:intron 40.0%
TCACAACTAGGCAAATGAGA+TGG - chr1_3:1301221-1301240 None:intergenic 40.0%
CTCATTTGCCTAGTTGTGAA+AGG + chr1_3:1301222-1301241 Msa0095890:intron 40.0%
ATTTGCCTAGTTGTGAAAGG+CGG + chr1_3:1301225-1301244 Msa0095890:intron 40.0%
GCGGTTGGAGTTGAAATTAT+TGG + chr1_3:1301244-1301263 Msa0095890:intron 40.0%
AACAATTGTTGCCATCACCA+AGG + chr1_3:1301298-1301317 Msa0095890:intron 40.0%
ACAACAAAAGGAGGAGAAAC+CGG - chr1_3:1301328-1301347 None:intergenic 40.0%
GCATCAACAACAACAAAAGG+AGG - chr1_3:1301337-1301356 None:intergenic 40.0%
ATTCACTCATTCCCAACCTT+AGG - chr1_3:1301388-1301407 None:intergenic 40.0%
GGTACCTACAATGTCTGAAT+TGG - chr1_3:1301642-1301661 None:intergenic 40.0%
ACTTCTGTAGGTTTGGATAC+AGG + chr1_3:1301802-1301821 Msa0095890:intron 40.0%
CAAAACTCTAGCACAGTTGT+CGG - chr1_3:1301844-1301863 None:intergenic 40.0%
AAAAAGGATGGTGAGAGATG+TGG - chr1_3:1301961-1301980 None:intergenic 40.0%
CAGGCCTAGATTGTCTAAAA+AGG - chr1_3:1301977-1301996 None:intergenic 40.0%
ACTAGCACAGTTGAACAATC+AGG - chr1_3:1301996-1302015 None:intergenic 40.0%
!! GGACATGGTTGATGAAAGAA+GGG - chr1_3:1302120-1302139 None:intergenic 40.0%
!! AGGACATGGTTGATGAAAGA+AGG - chr1_3:1302121-1302140 None:intergenic 40.0%
CTTTCATCAACCATGTCCTA+TGG + chr1_3:1302122-1302141 Msa0095890:intron 40.0%
TTACATACCTCCATAGGACA+TGG - chr1_3:1302135-1302154 None:intergenic 40.0%
CTCTAGTTACATACCTCCAT+AGG - chr1_3:1302141-1302160 None:intergenic 40.0%
! GGAGGTATGTAACTAGAGAA+TGG + chr1_3:1302143-1302162 Msa0095890:intron 40.0%
CAAGGCTATGCCTAATACAT+TGG - chr1_3:1302353-1302372 None:intergenic 40.0%
TGAAAGAAGAGGGTTGTGTT+AGG + chr1_3:1302400-1302419 Msa0095890:intron 40.0%
GATTGCGCCATAATCGTATT+TGG - chr1_3:1302471-1302490 None:intergenic 40.0%
! CTTTTCCCACTTAGTTGGAT+CGG - chr1_3:1302506-1302525 None:intergenic 40.0%
CGCGGGATGATTTATATATC+CGG - chr1_3:1302851-1302870 None:intergenic 40.0%
AATATTCTCAGAGCTTTCGC+GGG - chr1_3:1302868-1302887 None:intergenic 40.0%
TATGCAGTTGGATTCTCTAG+TGG - chr1_3:1303085-1303104 None:intergenic 40.0%
GGAACCTTAAAACCGAAAGC+TGG + chr1_3:1298975-1298994 Msa0095890:CDS 45.0%
AAGTGGGATAGACCAGCTTT+CGG - chr1_3:1298990-1299009 None:intergenic 45.0%
TTGATACCATTCAACGACGC+TGG - chr1_3:1299120-1299139 None:intergenic 45.0%
!! ATGGCTTTGGTGTGGCAATA+TGG + chr1_3:1299268-1299287 Msa0095890:CDS 45.0%
!! TGGCTTTGGTGTGGCAATAT+GGG + chr1_3:1299269-1299288 Msa0095890:CDS 45.0%
TGGCAATATGGGGAGAAATC+TGG + chr1_3:1299280-1299299 Msa0095890:CDS 45.0%
GGCAATATGGGGAGAAATCT+GGG + chr1_3:1299281-1299300 Msa0095890:CDS 45.0%
AGAAATCTGGGCATGAAGCT+TGG + chr1_3:1299293-1299312 Msa0095890:CDS 45.0%
!! GACTAGCTCTAGAGTAGCAA+TGG - chr1_3:1299943-1299962 None:intergenic 45.0%
ACACACACAGAGATGCAAAG+AGG - chr1_3:1300104-1300123 None:intergenic 45.0%
TTGTAGGTACCTCTACTTGG+TGG + chr1_3:1300271-1300290 Msa0095890:intron 45.0%
CAAAATGCTCCACCAAGTAG+AGG - chr1_3:1300283-1300302 None:intergenic 45.0%
! GAGCATTTTGTGCATGCACA+TGG + chr1_3:1300293-1300312 Msa0095890:CDS 45.0%
AAACCTTCCGTAGCCATTCA+TGG - chr1_3:1300479-1300498 None:intergenic 45.0%
TCAACAACGTCTCGACCTTA+TGG + chr1_3:1300632-1300651 Msa0095890:intron 45.0%
GACAGTTTAAACTAAGCCGC+TGG + chr1_3:1300666-1300685 Msa0095890:intron 45.0%
GCAAGAAAAAGCAAAGCACG+GGG + chr1_3:1300756-1300775 Msa0095890:intron 45.0%
TTTGGACAAAATGAGGGCTC+AGG + chr1_3:1300797-1300816 Msa0095890:intron 45.0%
CTCAGGTAGAGGTTGCATTT+AGG + chr1_3:1300814-1300833 Msa0095890:intron 45.0%
CAGGTAGAGGTTGCATTTAG+GGG + chr1_3:1300816-1300835 Msa0095890:intron 45.0%
TCACGAGTGCTTATGGTAGT+AGG - chr1_3:1300869-1300888 None:intergenic 45.0%
CATTGTCATGATAGGCAGCT+TGG + chr1_3:1301120-1301139 Msa0095890:intron 45.0%
CACAAAGCAAAGCTGAAAGC+TGG + chr1_3:1301185-1301204 Msa0095890:intron 45.0%
CAGAAACAACACACTTCTGC+AGG + chr1_3:1301753-1301772 Msa0095890:intron 45.0%
GCACAGTTGTCGGAATCTTA+TGG - chr1_3:1301834-1301853 None:intergenic 45.0%
GAAGGGATAACTATCTGCAC+AGG - chr1_3:1302103-1302122 None:intergenic 45.0%
TCATCAACCATGTCCTATGG+AGG + chr1_3:1302125-1302144 Msa0095890:intron 45.0%
ACAACCCTCTTCTTTCATCC+GGG - chr1_3:1302397-1302416 None:intergenic 45.0%
CACAACCCTCTTCTTTCATC+CGG - chr1_3:1302398-1302417 None:intergenic 45.0%
! AAGTTTTACGTTGGCCGTTG+AGG - chr1_3:1302426-1302445 None:intergenic 45.0%
ACTTAGTTGGATCGGCTACA+TGG - chr1_3:1302498-1302517 None:intergenic 45.0%
ATGTAGCCGATCCAACTAAG+TGG + chr1_3:1302497-1302516 Msa0095890:intron 45.0%
TGTAGCCGATCCAACTAAGT+GGG + chr1_3:1302498-1302517 Msa0095890:intron 45.0%
CGATCCAACTAAGTGGGAAA+AGG + chr1_3:1302504-1302523 Msa0095890:intron 45.0%
!! GGTATTGGTAGCTCTTCAAG+CGG + chr1_3:1302782-1302801 Msa0095890:intron 45.0%
CAAGCGGCACTAACTGTTAT+AGG + chr1_3:1302798-1302817 Msa0095890:CDS 45.0%
!!! CTTTTTTTTTTTTTTTTTTT+TGG + chr1_3:1299777-1299796 Msa0095890:intron 5.0%
!!! AATTTAAAATAAATGAAAAA+AGG - chr1_3:1303195-1303214 None:intergenic 5.0%
GGCAAAGACAGTGCATTGGA+TGG - chr1_3:1299077-1299096 None:intergenic 50.0%
AGTGGGCAAAGACAGTGCAT+TGG - chr1_3:1299081-1299100 None:intergenic 50.0%
ATGCACTGTCTTTGCCCACT+TGG + chr1_3:1299081-1299100 Msa0095890:CDS 50.0%
TGCACTGTCTTTGCCCACTT+GGG + chr1_3:1299082-1299101 Msa0095890:CDS 50.0%
GAGACATGAACAGCCCAAGT+GGG - chr1_3:1299098-1299117 None:intergenic 50.0%
ATGTCTCCAGCGTCGTTGAA+TGG + chr1_3:1299111-1299130 Msa0095890:CDS 50.0%
! GGCTTTGGTGTGGCAATATG+GGG + chr1_3:1299270-1299289 Msa0095890:CDS 50.0%
ATCTGGGCATGAAGCTTGGA+AGG + chr1_3:1299297-1299316 Msa0095890:CDS 50.0%
TCTGGGCATGAAGCTTGGAA+GGG + chr1_3:1299298-1299317 Msa0095890:CDS 50.0%
AAGCTTGGAAGGGTCTTTCC+TGG + chr1_3:1299308-1299327 Msa0095890:CDS 50.0%
AGCTTGGAAGGGTCTTTCCT+GGG + chr1_3:1299309-1299328 Msa0095890:CDS 50.0%
ACACCATGAATGGCTACGGA+AGG + chr1_3:1300473-1300492 Msa0095890:intron 50.0%
AGAAAAAGCAAAGCACGGGG+TGG + chr1_3:1300759-1300778 Msa0095890:intron 50.0%
GAAAAAGCAAAGCACGGGGT+GGG + chr1_3:1300760-1300779 Msa0095890:intron 50.0%
AAAAAGCAAAGCACGGGGTG+GGG + chr1_3:1300761-1300780 Msa0095890:intron 50.0%
CAAAATGAGGGCTCAGGTAG+AGG + chr1_3:1300803-1300822 Msa0095890:intron 50.0%
TGTCATGATAGGCAGCTTGG+TGG + chr1_3:1301123-1301142 Msa0095890:intron 50.0%
! ATAGGCAGCTTGGTGGATGT+TGG + chr1_3:1301130-1301149 Msa0095890:intron 50.0%
CAAAGCTGAAAGCTGGGCTT+TGG + chr1_3:1301192-1301211 Msa0095890:intron 50.0%
TCCAACCGCCTTTCACAACT+AGG - chr1_3:1301233-1301252 None:intergenic 50.0%
ATTGTTGCCATCACCAAGGC+CGG + chr1_3:1301302-1301321 Msa0095890:intron 50.0%
CCTTCAATGGTCGTAGACAG+AGG - chr1_3:1302230-1302249 None:intergenic 50.0%
CCTCTGTCTACGACCATTGA+AGG + chr1_3:1302227-1302246 Msa0095890:intron 50.0%
CTCTTCTTTCATCCGGGCTT+GGG - chr1_3:1302391-1302410 None:intergenic 50.0%
CAAGCCCGGATGAAAGAAGA+GGG + chr1_3:1302390-1302409 Msa0095890:intron 50.0%
AGGGTTGTGTTAGGCCTCAA+CGG + chr1_3:1302409-1302428 Msa0095890:intron 50.0%
! CAGGCCTTTTCCCACTTAGT+TGG - chr1_3:1302511-1302530 None:intergenic 50.0%
CAACTAAGTGGGAAAAGGCC+TGG + chr1_3:1302509-1302528 Msa0095890:intron 50.0%
CAATGTGCATAGCCGCATAC+CGG + chr1_3:1302829-1302848 Msa0095890:CDS 50.0%
GGAGACATGAACAGCCCAAG+TGG - chr1_3:1299099-1299118 None:intergenic 55.0%
GCTTGGAAGGGTCTTTCCTG+GGG + chr1_3:1299310-1299329 Msa0095890:CDS 55.0%
AAAAGCAAAGCACGGGGTGG+GGG + chr1_3:1300762-1300781 Msa0095890:intron 55.0%
TGGGGGGGCAGGATTGAATT+TGG + chr1_3:1300779-1300798 Msa0095890:intron 55.0%
! GCAGCTTGGTGGATGTTGGT+TGG + chr1_3:1301134-1301153 Msa0095890:intron 55.0%
GCCTAGTTGTGAAAGGCGGT+TGG + chr1_3:1301229-1301248 Msa0095890:intron 55.0%
CAAAAGGAGGAGAAACCGGC+CGG - chr1_3:1301324-1301343 None:intergenic 55.0%
CCTCTTCTTTCATCCGGGCT+TGG - chr1_3:1302392-1302411 None:intergenic 55.0%
CCAAGCCCGGATGAAAGAAG+AGG + chr1_3:1302389-1302408 Msa0095890:intron 55.0%
GAAGGGTCTTTCCTGGGGCA+TGG + chr1_3:1299315-1299334 Msa0095890:CDS 60.0%
AAAGCAAAGCACGGGGTGGG+GGG + chr1_3:1300763-1300782 Msa0095890:intron 60.0%
GGGACAGGCTACGCATAGCA+AGG - chr1_3:1302371-1302390 None:intergenic 60.0%
CTTTCATCCGGGCTTGGGAC+AGG - chr1_3:1302386-1302405 None:intergenic 60.0%
CAACGTGGCTGCAGCAGCCA+TGG - chr1_3:1298871-1298890 None:intergenic 65.0%
AAGCAAAGCACGGGGTGGGG+GGG + chr1_3:1300764-1300783 Msa0095890:intron 65.0%
TTGCCATCACCAAGGCCGGC+CGG + chr1_3:1301306-1301325 Msa0095890:intron 65.0%
AAACCGGCCGGCCTTGGTGA+TGG - chr1_3:1301312-1301331 None:intergenic 65.0%
TGCGTAGCCTGTCCCAAGCC+CGG + chr1_3:1302376-1302395 Msa0095890:intron 65.0%
GAGGAGAAACCGGCCGGCCT+TGG - chr1_3:1301318-1301337 None:intergenic 70.0%
AAAGCACGGGGTGGGGGGGC+AGG + chr1_3:1300768-1300787 Msa0095890:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1298783 1303276 1298783 ID=Msa0095890;Name=Msa0095890
chr1_3 mRNA 1298783 1303276 1298783 ID=Msa0095890-mRNA-1;Parent=Msa0095890;Name=Msa0095890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|0.66|1|4|386|172
chr1_3 exon 1298783 1299132 1298783 ID=Msa0095890-mRNA-1:exon:259;Parent=Msa0095890-mRNA-1
chr1_3 exon 1299258 1299336 1299258 ID=Msa0095890-mRNA-1:exon:260;Parent=Msa0095890-mRNA-1
chr1_3 exon 1300277 1300345 1300277 ID=Msa0095890-mRNA-1:exon:261;Parent=Msa0095890-mRNA-1
chr1_3 exon 1302783 1303276 1302783 ID=Msa0095890-mRNA-1:exon:262;Parent=Msa0095890-mRNA-1
chr1_3 five_prime_UTR 1298783 1298869 1298783 ID=Msa0095890-mRNA-1:five_prime_utr;Parent=Msa0095890-mRNA-1
chr1_3 CDS 1298870 1299132 1298870 ID=Msa0095890-mRNA-1:cds;Parent=Msa0095890-mRNA-1
chr1_3 CDS 1299258 1299336 1299258 ID=Msa0095890-mRNA-1:cds;Parent=Msa0095890-mRNA-1
chr1_3 CDS 1300277 1300345 1300277 ID=Msa0095890-mRNA-1:cds;Parent=Msa0095890-mRNA-1
chr1_3 CDS 1302783 1302890 1302783 ID=Msa0095890-mRNA-1:cds;Parent=Msa0095890-mRNA-1
chr1_3 three_prime_UTR 1302891 1303276 1302891 ID=Msa0095890-mRNA-1:three_prime_utr;Parent=Msa0095890-mRNA-1
Gene Sequence

>Msa0095890

ATGGCTGCTGCAGCCACGTTGTACTTAGCAAAACCATGTTGTTCTACTCCCAAAATCCCGTTTCCGTCAAATTCAAGAGTTTTCAATAACAGTAGCTATCGATTTGGAACCTTAAAACCGAAAGCTGGTCTATCCCACTTCCTCAACGTTGTAGAAACAACTTCCTCGTACATTCAACTTCCACTTCAACTTGAACTTCAAGAACCATCCAATGCACTGTCTTTGCCCACTTGGGCTGTTCATGTCTCCAGCGTCGTTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATATGGGGAGAAATCTGGGCATGAAGCTTGGAAGGGTCTTTCCTGGGGCATGGTACCTCTACTTGGTGGAGCATTTTGTGCATGCACATGGCATTTCTTTTATAACTCTGACTCCCTTGAGGTATTGGTAGCTCTTCAAGCGGCACTAACTGTTATAGGTAATATAACAATGTGCATAGCCGCATACCGGATATATAAATCATCCCGCGAAAGCTCTGAGAATATTTGA

Protein sequence

>Msa0095890

MAAAATLYLAKPCCSTPKIPFPSNSRVFNNSSYRFGTLKPKAGLSHFLNVVETTSSYIQLPLQLELQEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGHEAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTVIGNITMCIAAYRIYKSSRESSENI*