AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039060 MtrunA17_Chr7g0273001 92.222 540 20 1 1 540 1 518 0.0 878
Msa1039060 MtrunA17_Chr6g0460831 29.681 502 320 10 55 537 95 582 2.63e-47 173
Msa1039060 MtrunA17_Chr6g0460821 31.250 496 297 14 37 506 60 537 1.04e-42 160
Msa1039060 MtrunA17_Chr8g0344371 27.933 537 325 12 43 530 115 638 7.38e-42 159
Msa1039060 MtrunA17_Chr7g0254091 37.688 199 102 5 292 479 277 464 1.78e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039060 AT1G08960.1 64.738 553 157 7 7 540 13 546 0.0 635
Msa1039060 AT5G17860.1 31.687 486 299 9 59 530 90 556 5.58e-58 203
Msa1039060 AT1G54115.1 29.291 536 311 12 47 529 109 629 4.38e-51 185
Msa1039060 AT5G17860.2 30.625 480 277 12 59 530 90 521 1.22e-49 179
Msa1039060 AT5G17850.1 29.107 560 341 16 5 533 14 548 5.64e-46 170
Msa1039060 AT5G17850.2 29.107 560 341 16 5 533 14 548 5.64e-46 170
Msa1039060 AT3G14070.1 28.788 528 318 14 49 529 112 628 1.28e-44 167

Find 227 sgRNAs with CRISPR-Local

Find 508 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGATTGGGTTTCAAATT+AGG 0.134965 7_1:-76162078 None:intergenic
GGGATTATTTCTTCACTTCT+TGG 0.187661 7_1:+76164718 Msa1039060:three_prime_UTR
CCGGAAGCACCTGTTCTTAT+TGG 0.204430 7_1:+76164512 Msa1039060:three_prime_UTR
CGTATTAAGATTATGTTATA+TGG 0.208940 7_1:+76165080 Msa1039060:three_prime_UTR
ACAGGCAAATGCTCTGCTTT+TGG 0.211093 7_1:-76161342 None:intergenic
TCTGGATTTCGTGGATCTTT+TGG 0.240266 7_1:+76159446 Msa1039060:CDS
CACAGAGGGAAAAGAGTATT+AGG 0.243083 7_1:-76161255 None:intergenic
GATTCCGAGTGCCTAGGTTT+TGG 0.249551 7_1:+76161748 Msa1039060:CDS
TTAGGGGATAGGGGTTAGTT+AGG 0.255630 7_1:-76162060 None:intergenic
GGTCAGTGGTCAACGTAATT+TGG 0.260340 7_1:-76160772 None:intergenic
AGAGATTGGGTTTCAAATTA+GGG 0.264021 7_1:-76162077 None:intergenic
ATATTTAAAGTGCTACATTT+TGG 0.264976 7_1:-76161915 None:intergenic
GCAATGAGTTGGATTTATTA+AGG 0.281711 7_1:-76162119 None:intergenic
TTCGAAGTGAACTTAACTTT+TGG 0.297409 7_1:+76164784 Msa1039060:three_prime_UTR
AAATTAAGTTCATAGGCTTT+AGG 0.315192 7_1:-76161648 None:intergenic
ATTAGGGAGGAGGAAAACTA+TGG 0.320350 7_1:-76161238 None:intergenic
CCAATAAGAACAGGTGCTTC+CGG 0.326412 7_1:-76164512 None:intergenic
GGATTATTTCTTCACTTCTT+GGG 0.330439 7_1:+76164719 Msa1039060:three_prime_UTR
TTCGTCTCTGCTCTTGTTGT+CGG 0.331098 7_1:+76159128 Msa1039060:CDS
GATGAGGAGAATGGAGAGGG+AGG 0.338258 7_1:-76158895 None:intergenic
GAGGGAGGGGATTGAGAGGA+TGG 0.342271 7_1:-76158880 None:intergenic
GTGAATTGCCTTGAAGCTTT+AGG 0.347493 7_1:+76161423 Msa1039060:CDS
CCTTCGTTATGAGTGTGTTT+TGG 0.348369 7_1:+76161376 Msa1039060:CDS
CAACGAGATATCAAAGAGAT+TGG 0.350248 7_1:-76162091 None:intergenic
AACACCAAACTGAAATTTGT+TGG 0.351083 7_1:-76162418 None:intergenic
CATCCGGCCATTGCCATTGC+CGG 0.357339 7_1:-76161552 None:intergenic
GCAATGGCCGGATGCTTTGC+TGG 0.358095 7_1:+76161561 Msa1039060:CDS
AACAATCCATTTGGCCCACC+TGG 0.365523 7_1:-76164950 None:intergenic
TGTTGGTCTTGGAACTGCTT+TGG 0.368704 7_1:+76161602 Msa1039060:CDS
ACAAACGGCGTCGGATCAAC+GGG 0.379286 7_1:-76159179 None:intergenic
ACAATTACTATCATATCAAA+TGG 0.383408 7_1:-76160818 None:intergenic
TACTTTGACTGCACAAAACT+TGG 0.387919 7_1:+76164832 Msa1039060:three_prime_UTR
CCTCAATCTCTCTCCTAGTA+TGG 0.388430 7_1:+76158989 Msa1039060:CDS
CGACATTAGCTAAGAGCATT+TGG 0.389034 7_1:+76164594 Msa1039060:three_prime_UTR
CAATAAGAACAGGTGCTTCC+GGG 0.389839 7_1:-76164511 None:intergenic
CTTCATAGAAAGATTTAGAT+AGG 0.389924 7_1:+76161852 Msa1039060:three_prime_UTR
TTCTATATTGTTGCATTGCA+TGG 0.391207 7_1:+76164867 Msa1039060:three_prime_UTR
AAACTATTTAAGAAGAAAAC+TGG 0.396532 7_1:+76161942 Msa1039060:three_prime_UTR
TTTAACATGCTTGTTGGTCT+TGG 0.397900 7_1:+76161591 Msa1039060:CDS
CTCTCAAGCTTAGTGCTAGA+AGG 0.399250 7_1:+76164986 Msa1039060:three_prime_UTR
TATTCCAACAAATTTCAGTT+TGG 0.399670 7_1:+76162414 Msa1039060:three_prime_UTR
TGAGGAGAATGGAGAGGGAG+GGG 0.401522 7_1:-76158893 None:intergenic
GGTCAATACCGTACCGGCTT+CGG 0.402969 7_1:+76159083 Msa1039060:CDS
AAAACCTAGGCACTCGGAAT+CGG 0.406998 7_1:-76161746 None:intergenic
GAGGATTAGTGAGAGTGAAA+TGG 0.411408 7_1:-76158694 None:intergenic
TAGTGGACAAAGAGCGATAT+TGG 0.413049 7_1:-76161172 None:intergenic
ATTGAGAGGATGGGAGTTTG+AGG 0.414253 7_1:-76158870 None:intergenic
AGCTTGTTCTGTTGCCCGAC+AGG 0.414924 7_1:-76163924 None:intergenic
GGGTTTCAAATTAGGGGATA+GGG 0.416477 7_1:-76162070 None:intergenic
AAATGACCTTCAAAACTTCA+TGG 0.416645 7_1:-76162448 None:intergenic
GAGGGATTGTCAATCTTAAG+AGG 0.419753 7_1:-76161110 None:intergenic
CATTGCGATGGTGCTGGTTG+AGG 0.420449 7_1:-76161129 None:intergenic
TGTACTTGCAACAAATTTCC+AGG 0.422420 7_1:-76164487 None:intergenic
TGGATTGAATGGGGCAAGAT+GGG 0.423000 7_1:-76158815 None:intergenic
GTTACCTAGGAAAATCGTTA+TGG 0.427493 7_1:-76164380 None:intergenic
TAGGGGATAGGGGTTAGTTA+GGG 0.431453 7_1:-76162059 None:intergenic
CGGAATTACAAAAGCTGAAG+TGG 0.438591 7_1:+76164695 Msa1039060:three_prime_UTR
GCTAGAAGGTTAATACTAGA+AGG 0.445809 7_1:+76165000 Msa1039060:three_prime_UTR
TGGGTTTCAAATTAGGGGAT+AGG 0.449743 7_1:-76162071 None:intergenic
TGGAGAGGGAGGGGATTGAG+AGG 0.453858 7_1:-76158884 None:intergenic
GCATTTGCCTGTGGTGGTTG+TGG 0.453910 7_1:+76161353 Msa1039060:CDS
GATGCCGCCATTGGATTGAA+TGG 0.456465 7_1:-76158826 None:intergenic
AACGAGATATCAAAGAGATT+GGG 0.460124 7_1:-76162090 None:intergenic
ATTAAGAGAGATGGAGAGGG+AGG 0.460413 7_1:-76158747 None:intergenic
GGATGTAGAAATGGAGGATG+AGG 0.460612 7_1:-76158911 None:intergenic
AAACCTAGGCACTCGGAATC+GGG 0.460770 7_1:-76161745 None:intergenic
CTCTCTCTCCATCAGCCACT+TGG 0.461009 7_1:-76165049 None:intergenic
TTGGATTGAATGGGGCAAGA+TGG 0.462224 7_1:-76158816 None:intergenic
GGAATAAGAAAGAACTGAGT+GGG 0.463568 7_1:+76165021 Msa1039060:three_prime_UTR
AACAAACGGCGTCGGATCAA+CGG 0.463620 7_1:-76159180 None:intergenic
AGAAACCAGGTATCAAGAAC+TGG 0.465897 7_1:-76161989 None:intergenic
GTTGTTGTGATTAAGAGAGA+TGG 0.468641 7_1:-76158756 None:intergenic
ATGCCGCCATTGGATTGAAT+GGG 0.469388 7_1:-76158825 None:intergenic
AAACAATCAACTTGAAAAGA+TGG 0.469803 7_1:-76161826 None:intergenic
CCAATGTTTAACATGCTTGT+TGG 0.469958 7_1:+76161585 Msa1039060:CDS
TTGAGAGGATGGGAGTTTGA+GGG 0.470188 7_1:-76158869 None:intergenic
TCAATTCAAGAAGGCCTGTC+GGG 0.472852 7_1:+76163910 Msa1039060:three_prime_UTR
ACGAAGGCCACAACCACCAC+AGG 0.474486 7_1:-76161360 None:intergenic
ATTGCGATGGTGCTGGTTGA+GGG 0.474576 7_1:-76161128 None:intergenic
GAAGCGTGCCTAAAGCTTCA+AGG 0.475284 7_1:-76161431 None:intergenic
TAGGTCTTACCGTGCTAGCA+TGG 0.482485 7_1:+76161475 Msa1039060:CDS
CCACTAGTCAAATGATGTAA+TGG 0.483396 7_1:+76164541 Msa1039060:three_prime_UTR
GACAGGAAGCTCCCATGCCT+TGG 0.483478 7_1:-76161082 None:intergenic
AAACTGCCGCAGGCATTCCT+AGG 0.484727 7_1:+76161456 Msa1039060:CDS
AGCTTTCTTCTCTTGAAGCT+CGG 0.488783 7_1:+76162376 Msa1039060:intron
CCATTACATCATTTGACTAG+TGG 0.490989 7_1:-76164541 None:intergenic
AATTGGTTTATAAAATTGCC+CGG 0.491181 7_1:-76164905 None:intergenic
AACGTGGAAATTAAGTTCAT+AGG 0.491726 7_1:-76161655 None:intergenic
GCGAGAGATGAGAAGACGTC+GGG 0.494583 7_1:-76159047 None:intergenic
AGGAACCCAGGTGGGCCAAA+TGG 0.494754 7_1:+76164944 Msa1039060:three_prime_UTR
CACGCTTCTCAAACTGCCGC+AGG 0.495555 7_1:+76161446 Msa1039060:CDS
GAAATGGAGGATGAGGAGAA+TGG 0.496656 7_1:-76158904 None:intergenic
GAGGATGAGGAGAATGGAGA+GGG 0.497270 7_1:-76158898 None:intergenic
ACAGAGGGAAAAGAGTATTA+GGG 0.497292 7_1:-76161254 None:intergenic
AAAATCCAGTTCTTGATACC+TGG 0.497752 7_1:+76161984 Msa1039060:three_prime_UTR
TCTTTCTCTATTGAAGATTG+AGG 0.498027 7_1:+76162270 Msa1039060:three_prime_UTR
TGGAAACAACCAATAAGAAC+AGG 0.499667 7_1:-76164521 None:intergenic
TAGTTGTGACGATTGAGAAA+TGG 0.500180 7_1:-76158953 None:intergenic
GTATTAAGATTATGTTATAT+GGG 0.501904 7_1:+76165081 Msa1039060:three_prime_UTR
GGAAAAGAGTATTAGGGAGG+AGG 0.503216 7_1:-76161248 None:intergenic
GTGAGAGACGAGGAGAAACC+AGG 0.503320 7_1:-76162002 None:intergenic
CTTACTACCAGAGCATCAAA+TGG 0.503841 7_1:+76163865 Msa1039060:three_prime_UTR
GCTTACAGATTTCCAAGGCA+TGG 0.505102 7_1:+76161070 Msa1039060:intron
GTAGTTGAGGATGCCGCCAT+TGG 0.505638 7_1:-76158835 None:intergenic
AGTTGCTAAAGCTGGTCATC+CGG 0.505727 7_1:+76161533 Msa1039060:CDS
TGCAATGCAACAATATAGAA+AGG 0.507983 7_1:-76164864 None:intergenic
AGGTGGGCCAAATGGATTGT+TGG 0.510861 7_1:+76164952 Msa1039060:three_prime_UTR
AAACACACTTCTGGATTTCG+TGG 0.512701 7_1:+76159437 Msa1039060:CDS
TGGTCATCCGGCAATGGCAA+TGG 0.515868 7_1:+76161545 Msa1039060:CDS
CTGTTCCATTGCGATGGTGC+TGG 0.516010 7_1:-76161135 None:intergenic
CCATACTAGGAGAGAGATTG+AGG 0.516197 7_1:-76158989 None:intergenic
AAGAGTTCTGCGGATCTTGA+GGG 0.516492 7_1:+76159362 Msa1039060:CDS
AAAGAGTTCTGCGGATCTTG+AGG 0.517795 7_1:+76159361 Msa1039060:CDS
ACACTTCTTGCTCTCGGTAA+CGG 0.520103 7_1:+76159020 Msa1039060:CDS
AGTGTGACGGCGGCCATACT+AGG 0.520260 7_1:-76159002 None:intergenic
ATGAGGAGAATGGAGAGGGA+GGG 0.521792 7_1:-76158894 None:intergenic
AAAACTATGGGATGATTAAG+TGG 0.522490 7_1:-76161225 None:intergenic
AACAACACATCTCTAACAAA+CGG 0.524091 7_1:-76159194 None:intergenic
TTTGGGAATGGCCAATCGGA+GGG 0.524305 7_1:+76159337 Msa1039060:CDS
CATTGGTCCAGCAAAGCATC+CGG 0.524643 7_1:-76161568 None:intergenic
TGTGATTAAGAGAGATGGAG+AGG 0.527303 7_1:-76158751 None:intergenic
GGCGTCGGATCAACGGGAAA+AGG 0.530201 7_1:-76159173 None:intergenic
GCCGTCACACTTCTTGCTCT+CGG 0.531720 7_1:+76159014 Msa1039060:CDS
GGTTTCAAATTAGGGGATAG+GGG 0.533769 7_1:-76162069 None:intergenic
AGCAGAGACGAAAGCACCGG+CGG 0.534152 7_1:-76159117 None:intergenic
GTATAGCACCGAAGCCGGTA+CGG 0.535187 7_1:-76159091 None:intergenic
GAGAGGAGAGAGTATTATCA+AGG 0.536518 7_1:+76165115 Msa1039060:three_prime_UTR
CATCCGGCAATGGCAATGGC+CGG 0.540312 7_1:+76161549 Msa1039060:CDS
CTTACAGATTTCCAAGGCAT+GGG 0.541325 7_1:+76161071 Msa1039060:intron
CAATTACTATCATATCAAAT+GGG 0.541435 7_1:-76160817 None:intergenic
TCAATGACGAAGAGCAGTGC+AGG 0.542295 7_1:+76163951 Msa1039060:three_prime_UTR
ACCCCATGAGGCTTAAAAGC+AGG 0.545048 7_1:-76161701 None:intergenic
AGGTCTTACCGTGCTAGCAT+GGG 0.548021 7_1:+76161476 Msa1039060:CDS
GGGAGTCACGAGCAATGAGT+TGG 0.549283 7_1:-76162130 None:intergenic
AGGGAGGGGATTGAGAGGAT+GGG 0.549440 7_1:-76158879 None:intergenic
AGGACCAGTGTTAGGAACCC+AGG 0.550048 7_1:+76164932 Msa1039060:three_prime_UTR
GTTTATGCGTATTTGACACC+TGG 0.550987 7_1:+76164469 Msa1039060:three_prime_UTR
CGCGCCGGTCAATACCGTAC+CGG 0.551721 7_1:+76159077 Msa1039060:CDS
GGTCCCGATTCCGAGTGCCT+AGG 0.552227 7_1:+76161742 Msa1039060:CDS
TGAGTTGAGTGTGAGAGACG+AGG 0.553112 7_1:-76162012 None:intergenic
TTTCTTGTCTACAGTTACCT+AGG 0.553185 7_1:-76164393 None:intergenic
AATCTTAAGAGGGTTGAGAC+AGG 0.554164 7_1:-76161099 None:intergenic
CCCACCTGGGTTCCTAACAC+TGG 0.554568 7_1:-76164936 None:intergenic
GGGGTTGTCCAAGTGGCTGA+TGG 0.555275 7_1:+76165041 Msa1039060:three_prime_UTR
TAACTGTAGACAAGAAATGT+TGG 0.558214 7_1:+76164399 Msa1039060:three_prime_UTR
TCTCTCGCCGCTCTTCGCGC+CGG 0.558505 7_1:+76159062 Msa1039060:CDS
GTCAAATACGCATAAACTTG+TGG 0.560739 7_1:-76164463 None:intergenic
TTCAATTCAAGAAGGCCTGT+CGG 0.561563 7_1:+76163909 Msa1039060:three_prime_UTR
GAGATTGGGTTTCAAATTAG+GGG 0.562024 7_1:-76162076 None:intergenic
CATGCATACAAGAGGGCTAG+TGG 0.564229 7_1:-76161189 None:intergenic
AGAAGATGATAATGAGAGTG+AGG 0.566303 7_1:-76158713 None:intergenic
AGGAATAAGAAAGAACTGAG+TGG 0.567355 7_1:+76165020 Msa1039060:three_prime_UTR
TGAGGAATAGCAATGGAAAG+TGG 0.567770 7_1:+76164438 Msa1039060:three_prime_UTR
TTCGGTGCTATACTCTCCGC+CGG 0.569177 7_1:+76159101 Msa1039060:CDS
TGGATTTGGGAATGGCCAAT+CGG 0.570540 7_1:+76159333 Msa1039060:CDS
GTGATTAAGAGAGATGGAGA+GGG 0.571371 7_1:-76158750 None:intergenic
TCTTGCCCCATTCAATCCAA+TGG 0.576988 7_1:+76158819 Msa1039060:CDS
TGATGAGGATGTAGAAATGG+AGG 0.577881 7_1:-76158917 None:intergenic
GATGTTGCAGTTGCTAAAGC+TGG 0.582356 7_1:+76161525 Msa1039060:CDS
ATCCCCAAAACCTAGGCACT+CGG 0.583255 7_1:-76161752 None:intergenic
CTCAACCAGCACCATCGCAA+TGG 0.584181 7_1:+76161130 Msa1039060:CDS
GAAGCCGGTACGGTATTGAC+CGG 0.584215 7_1:-76159081 None:intergenic
AGGGATTGTCAATCTTAAGA+GGG 0.584931 7_1:-76161109 None:intergenic
GGTCTCTCTTAGTAATCACT+TGG 0.585616 7_1:+76161721 Msa1039060:CDS
GGATTGAATGGGGCAAGATG+GGG 0.586530 7_1:-76158814 None:intergenic
GGAGGATGAGGAGAATGGAG+AGG 0.588369 7_1:-76158899 None:intergenic
TGAATTTCCCCATGCTAGCA+CGG 0.589057 7_1:-76161484 None:intergenic
ACAATCCATTTGGCCCACCT+GGG 0.590622 7_1:-76164949 None:intergenic
GCTAGCATGGGGAAATTCAG+TGG 0.592549 7_1:+76161488 Msa1039060:CDS
ATTTGGGAATGGCCAATCGG+AGG 0.593231 7_1:+76159336 Msa1039060:CDS
TATGAACTTAATTTCCACGT+TGG 0.594331 7_1:+76161657 Msa1039060:CDS
GGAATTACAAAAGCTGAAGT+GGG 0.594798 7_1:+76164696 Msa1039060:three_prime_UTR
AATTTGTTGCAAGTACATCC+CGG 0.595795 7_1:+76164493 Msa1039060:three_prime_UTR
AAGATGGGGCGATGTTGTTG+AGG 0.596259 7_1:-76158800 None:intergenic
CTAGCATGGGGAAATTCAGT+GGG 0.597425 7_1:+76161489 Msa1039060:CDS
TAAAGCTGGTCATCCGGCAA+TGG 0.598791 7_1:+76161539 Msa1039060:CDS
TGATCATAGTAGCATCAACT+AGG 0.599086 7_1:-76160793 None:intergenic
TTAGGGAGGAGGAAAACTAT+GGG 0.599981 7_1:-76161237 None:intergenic
AGCAGAGCATTTGCCTGTGG+TGG 0.606627 7_1:+76161347 Msa1039060:CDS
GGAGAGTATAGCACCGAAGC+CGG 0.607284 7_1:-76159096 None:intergenic
TGAACACTACGGACCACAGA+GGG 0.608035 7_1:-76161269 None:intergenic
GTATTGACCGGCGCGAAGAG+CGG 0.613005 7_1:-76159069 None:intergenic
ATGAGTTACATGCATACAAG+AGG 0.615518 7_1:-76161197 None:intergenic
ATGCTAGCACGGTAAGACCT+AGG 0.615531 7_1:-76161473 None:intergenic
CCAACAAGCATGTTAAACAT+TGG 0.616677 7_1:-76161585 None:intergenic
AGACAGAATCCCCAAAACCT+AGG 0.616693 7_1:-76161759 None:intergenic
AAGAGCAGAGACGAAAGCAC+CGG 0.618004 7_1:-76159120 None:intergenic
AAAAGCATGAGGAATAGCAA+TGG 0.621608 7_1:+76164431 Msa1039060:three_prime_UTR
TGCTCTTAGCTAATGTCGTG+TGG 0.623659 7_1:-76164589 None:intergenic
GATTGAGAAATGGTGAGAAG+CGG 0.626670 7_1:-76158943 None:intergenic
GGCGAGAGATGAGAAGACGT+CGG 0.634201 7_1:-76159048 None:intergenic
ACCGAGAGCAAGAAGTGTGA+CGG 0.636921 7_1:-76159015 None:intergenic
ATTCACGAGCTCTCCAGCTG+TGG 0.642513 7_1:-76161406 None:intergenic
GGAAAATGCAGTGGTAGTTG+AGG 0.644910 7_1:-76158848 None:intergenic
TAAAATCTGTTCCATTGCGA+TGG 0.654446 7_1:-76161141 None:intergenic
TGCCCCATTCAATCCAATGG+CGG 0.655644 7_1:+76158822 Msa1039060:CDS
GAATAAGAAAGAACTGAGTG+GGG 0.657253 7_1:+76165022 Msa1039060:three_prime_UTR
AGTAGCATCAACTAGGTCAG+TGG 0.658819 7_1:-76160786 None:intergenic
GGTCTTACCGTGCTAGCATG+GGG 0.659113 7_1:+76161477 Msa1039060:CDS
TGCCGCCATTGGATTGAATG+GGG 0.659131 7_1:-76158824 None:intergenic
GAATTACAAAAGCTGAAGTG+GGG 0.665958 7_1:+76164697 Msa1039060:three_prime_UTR
AATTACAAAAGCTGAAGTGG+GGG 0.666599 7_1:+76164698 Msa1039060:three_prime_UTR
TTGAGGAGTGATCTACGAAG+AGG 0.667500 7_1:-76158783 None:intergenic
TGAGTTACATGCATACAAGA+GGG 0.668778 7_1:-76161196 None:intergenic
ACATCTCTAACAAACGGCGT+CGG 0.669340 7_1:-76159188 None:intergenic
ACTCTGCTTACAGATTTCCA+AGG 0.670878 7_1:+76161065 Msa1039060:intron
GAGGGAAAAGAGTATTAGGG+AGG 0.671135 7_1:-76161251 None:intergenic
AATACTTGTTATCTGTACCA+CGG 0.673474 7_1:-76164327 None:intergenic
ATGAACACTACGGACCACAG+AGG 0.674220 7_1:-76161270 None:intergenic
GAGTTTGAGGGAAAATGCAG+TGG 0.675343 7_1:-76158857 None:intergenic
CCAAAACACACTCATAACGA+AGG 0.680133 7_1:-76161376 None:intergenic
AAAAGCAGAGCATTTGCCTG+TGG 0.684107 7_1:+76161344 Msa1039060:CDS
CCAGTGTTAGGAACCCAGGT+GGG 0.686416 7_1:+76164936 Msa1039060:three_prime_UTR
ACTGAGTGGGGTTGTCCAAG+TGG 0.689096 7_1:+76165034 Msa1039060:three_prime_UTR
GCGCTCTTTGAATGGAACCG+TGG 0.689244 7_1:+76164310 Msa1039060:intron
GAAGCTTGTCATGAACACTA+CGG 0.689618 7_1:-76161280 None:intergenic
ATAGAACGCAACGAATCCAA+CGG 0.692109 7_1:-76159282 None:intergenic
TCGGAGGGAAAAGAGTTCTG+CGG 0.694446 7_1:+76159352 Msa1039060:CDS
GGAACTATGTGAAAAGCATG+AGG 0.695196 7_1:+76164420 Msa1039060:three_prime_UTR
GAGAGCAAGAAGTGTGACGG+CGG 0.705167 7_1:-76159012 None:intergenic
ACCAGTGTTAGGAACCCAGG+TGG 0.705970 7_1:+76164935 Msa1039060:three_prime_UTR
TATGGGTGCTGACTGCTGAG+AGG 0.708788 7_1:+76165098 Msa1039060:three_prime_UTR
AGCATGGGGAAATTCAGTGG+GGG 0.714129 7_1:+76161491 Msa1039060:CDS
GTAAGACCTAGGAATGCCTG+CGG 0.717066 7_1:-76161462 None:intergenic
TTACTAAGAGAGACCCCATG+AGG 0.728107 7_1:-76161713 None:intergenic
TAGCATGGGGAAATTCAGTG+GGG 0.756066 7_1:+76161490 Msa1039060:CDS
ATGCAATCACTATACCAACG+TGG 0.773379 7_1:-76161671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATTTTAATCATTATT+AGG - chr7_1:76160107-76160126 None:intergenic 10.0%
!! ATAATTAAATAAAATATTCC+TGG + chr7_1:76160934-76160953 Msa1039060:intron 10.0%
!! TAATTAAATAAAATATTCCT+GGG + chr7_1:76160935-76160954 Msa1039060:intron 10.0%
!!! ATTTTATAAACCAATTTTTT+AGG + chr7_1:76164912-76164931 Msa1039060:three_prime_UTR 10.0%
!!! GAATTTTCTTATATTATTGA+AGG - chr7_1:76159968-76159987 None:intergenic 15.0%
!! AATTCAATTCAAAAGATTAA+TGG + chr7_1:76160119-76160138 Msa1039060:intron 15.0%
!!! CTAGAATAATTATTTGTTTT+TGG + chr7_1:76162341-76162360 Msa1039060:intron 15.0%
!!! AATAATTATTTGTTTTTGGT+TGG + chr7_1:76162345-76162364 Msa1039060:intron 15.0%
!! TTACTAATGTAATCTTTAAT+TGG + chr7_1:76163996-76164015 Msa1039060:intron 15.0%
!! AATATGAAATACAATTGAAA+AGG - chr7_1:76164159-76164178 None:intergenic 15.0%
!! AACTATATAAATTTACATTC+TGG - chr7_1:76164265-76164284 None:intergenic 15.0%
!! GTATTAAGATTATGTTATAT+GGG + chr7_1:76165081-76165100 Msa1039060:three_prime_UTR 15.0%
!!! ATTCAAAAGATTAATGGTTT+TGG + chr7_1:76160125-76160144 Msa1039060:intron 20.0%
!!! TTTTTGATAATACAGTAATC+TGG + chr7_1:76160186-76160205 Msa1039060:intron 20.0%
!!! TTTTGATAATACAGTAATCT+GGG + chr7_1:76160187-76160206 Msa1039060:intron 20.0%
!! GAAGATAATTTGAATTTAGA+AGG + chr7_1:76160574-76160593 Msa1039060:intron 20.0%
!! TGAAAAGATTAACAAGTTAA+TGG - chr7_1:76160641-76160660 None:intergenic 20.0%
!!! TAATCTTTTCACACATAATA+TGG + chr7_1:76160650-76160669 Msa1039060:intron 20.0%
!!! AATCTTTTCACACATAATAT+GGG + chr7_1:76160651-76160670 Msa1039060:intron 20.0%
!! CAATTACTATCATATCAAAT+GGG - chr7_1:76160820-76160839 None:intergenic 20.0%
!! ACAATTACTATCATATCAAA+TGG - chr7_1:76160821-76160840 None:intergenic 20.0%
!!! ATATTTAAAGTGCTACATTT+TGG - chr7_1:76161918-76161937 None:intergenic 20.0%
!!! GTTTTCTTCTTAAATAGTTT+GGG - chr7_1:76161942-76161961 None:intergenic 20.0%
!!! AGTTTTCTTCTTAAATAGTT+TGG - chr7_1:76161943-76161962 None:intergenic 20.0%
!! AAACTATTTAAGAAGAAAAC+TGG + chr7_1:76161942-76161961 Msa1039060:three_prime_UTR 20.0%
!! TTATGAAGTATGAATGATTA+TGG + chr7_1:76162528-76162547 Msa1039060:intron 20.0%
!!! TTTTTCTACTAAATAACTAC+AGG - chr7_1:76162971-76162990 None:intergenic 20.0%
!! TGTAGTTATTTAGTAGAAAA+AGG + chr7_1:76162970-76162989 Msa1039060:intron 20.0%
!! TTGTTACATTATCTTACAAA+GGG + chr7_1:76163350-76163369 Msa1039060:intron 20.0%
!!! ATACCTGTTATTTATTATCT+AGG + chr7_1:76163755-76163774 Msa1039060:intron 20.0%
!! ATTCCTAGATAATAAATAAC+AGG - chr7_1:76163761-76163780 None:intergenic 20.0%
!! TTGAATTGATAAACAAGAAA+CGG - chr7_1:76163804-76163823 None:intergenic 20.0%
!!! ATCTTTAATTGGTTTTCTTT+TGG + chr7_1:76164007-76164026 Msa1039060:intron 20.0%
!! ATATAAATTTACATTCTGGA+TGG - chr7_1:76164261-76164280 None:intergenic 20.0%
!!! TAAAACTTTTTAGAAATGTG+TGG - chr7_1:76164756-76164775 None:intergenic 20.0%
!! CGTATTAAGATTATGTTATA+TGG + chr7_1:76165080-76165099 Msa1039060:three_prime_UTR 20.0%
!! TTTTGTGTTTTACATGGATT+TGG + chr7_1:76159319-76159338 Msa1039060:CDS 25.0%
!! TTTGTGTTTTACATGGATTT+GGG + chr7_1:76159320-76159339 Msa1039060:CDS 25.0%
!!! ACGTATTTTTTTTTTGGTAG+TGG - chr7_1:76159610-76159629 None:intergenic 25.0%
!!! AAGCACACGTATTTTTTTTT+TGG - chr7_1:76159616-76159635 None:intergenic 25.0%
! GATATAATTCATTCATAGCT+TGG + chr7_1:76159733-76159752 Msa1039060:intron 25.0%
!! GAAAAATTAGTTTACACTGA+CGG + chr7_1:76159801-76159820 Msa1039060:intron 25.0%
!! ACCTGATTTTGAATAAAACA+GGG - chr7_1:76159845-76159864 None:intergenic 25.0%
!! AACCTGATTTTGAATAAAAC+AGG - chr7_1:76159846-76159865 None:intergenic 25.0%
!!! TACTTATTAGTTAACTTGCT+TGG + chr7_1:76159889-76159908 Msa1039060:intron 25.0%
!!! TTCTAAAATTGGTTACTCAT+AGG + chr7_1:76159915-76159934 Msa1039060:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr7_1:76160223-76160242 Msa1039060:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr7_1:76160365-76160384 Msa1039060:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr7_1:76160405-76160424 None:intergenic 25.0%
! TACAACTCATCATACAAAAA+AGG - chr7_1:76160514-76160533 None:intergenic 25.0%
!! ATCTTTTCACACATAATATG+GGG + chr7_1:76160652-76160671 Msa1039060:intron 25.0%
!! GTTCTTTTTCCAATACAAAA+TGG - chr7_1:76161320-76161339 None:intergenic 25.0%
! AAATTAAGTTCATAGGCTTT+AGG - chr7_1:76161651-76161670 None:intergenic 25.0%
! AAACAATCAACTTGAAAAGA+TGG - chr7_1:76161829-76161848 None:intergenic 25.0%
! CTTCATAGAAAGATTTAGAT+AGG + chr7_1:76161852-76161871 Msa1039060:three_prime_UTR 25.0%
!!! CTACATTTTGGTTTTGAATA+TGG - chr7_1:76161906-76161925 None:intergenic 25.0%
!!! TGTATTTTAGAATGCACTAA+GGG - chr7_1:76162153-76162172 None:intergenic 25.0%
!!! TTCATTCATGCAATTTGTTT+TGG + chr7_1:76162312-76162331 Msa1039060:intron 25.0%
! TATTCCAACAAATTTCAGTT+TGG + chr7_1:76162414-76162433 Msa1039060:three_prime_UTR 25.0%
!!! TTGTGTTTTCATATTTGCTA+TGG + chr7_1:76162601-76162620 Msa1039060:intron 25.0%
! ACAGTTGAAAATATTGAACA+AGG + chr7_1:76162805-76162824 Msa1039060:intron 25.0%
! CAGTTGAAAATATTGAACAA+GGG + chr7_1:76162806-76162825 Msa1039060:intron 25.0%
! TTTCATGTCTCTTAGAATTT+GGG + chr7_1:76162995-76163014 Msa1039060:intron 25.0%
!! TGATTATTTCTTGAGAAGAT+AGG + chr7_1:76163297-76163316 Msa1039060:intron 25.0%
! CTTTGTAAGATAATGTAACA+AGG - chr7_1:76163351-76163370 None:intergenic 25.0%
! CTTGTTACATTATCTTACAA+AGG + chr7_1:76163349-76163368 Msa1039060:intron 25.0%
! TGTTACATTATCTTACAAAG+GGG + chr7_1:76163351-76163370 Msa1039060:intron 25.0%
! GATAATAAATAACAGGTATG+TGG - chr7_1:76163754-76163773 None:intergenic 25.0%
! ATGGAAAAAAGAGATGAAAA+AGG + chr7_1:76163884-76163903 Msa1039060:three_prime_UTR 25.0%
!! AAAAGGTTTTCAATTCAAGA+AGG + chr7_1:76163901-76163920 Msa1039060:three_prime_UTR 25.0%
!! TTGGTTGACCTATTTTATTA+TGG + chr7_1:76164067-76164086 Msa1039060:intron 25.0%
! TTGTTGCTCCATAATAAAAT+AGG - chr7_1:76164078-76164097 None:intergenic 25.0%
!! TGTATTTTATTGTTCTGTGT+GGG + chr7_1:76164618-76164637 Msa1039060:three_prime_UTR 25.0%
!!! ATTTCTTTGTCACTTTTACA+CGG + chr7_1:76164668-76164687 Msa1039060:three_prime_UTR 25.0%
!! TGGATGGTATATATTTTGTT+TGG + chr7_1:76164804-76164823 Msa1039060:three_prime_UTR 25.0%
!! AATTGGTTTATAAAATTGCC+CGG - chr7_1:76164908-76164927 None:intergenic 25.0%
! TTTTGATGAGGATGTAGAAA+TGG - chr7_1:76158923-76158942 None:intergenic 30.0%
AACAACACATCTCTAACAAA+CGG - chr7_1:76159197-76159216 None:intergenic 30.0%
!! TTAGTGCTGAGATTTTTCTA+TGG + chr7_1:76159255-76159274 Msa1039060:CDS 30.0%
!!! TGTTGGTTTTGTGTTTTACA+TGG + chr7_1:76159313-76159332 Msa1039060:CDS 30.0%
GAAAAAGATAAACACACTTC+TGG + chr7_1:76159428-76159447 Msa1039060:CDS 30.0%
!! ACTTTCAATTAGCTTTGTGA+TGG + chr7_1:76159484-76159503 Msa1039060:intron 30.0%
!!! AATTAGCTTTGTGATGGTTT+TGG + chr7_1:76159490-76159509 Msa1039060:intron 30.0%
! TGAAAGCACACATATATGAA+AGG - chr7_1:76159516-76159535 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr7_1:76159565-76159584 Msa1039060:intron 30.0%
!!! ATTTTTTTTTTGGTAGTGGC+CGG - chr7_1:76159606-76159625 None:intergenic 30.0%
!! TCCCTGTTTTATTCAAAATC+AGG + chr7_1:76159841-76159860 Msa1039060:intron 30.0%
!! TTGCTTGGACTTTCTAAAAT+TGG + chr7_1:76159904-76159923 Msa1039060:intron 30.0%
CATTGTTTCAAGGTTACATA+TGG - chr7_1:76160054-76160073 None:intergenic 30.0%
CATATGTAACCTTGAAACAA+TGG + chr7_1:76160052-76160071 Msa1039060:intron 30.0%
CTCAGTTATAGTAGAAAAGT+TGG + chr7_1:76160212-76160231 Msa1039060:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr7_1:76160289-76160308 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr7_1:76160290-76160309 Msa1039060:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - chr7_1:76160358-76160377 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr7_1:76160370-76160389 None:intergenic 30.0%
! CAATGAGTTGAATCCAAATA+TGG + chr7_1:76160389-76160408 Msa1039060:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr7_1:76160409-76160428 Msa1039060:intron 30.0%
TGTATGATGAGTTGTAGTAA+TGG + chr7_1:76160518-76160537 Msa1039060:intron 30.0%
CACAATCGTTATTTATGTTG+TGG + chr7_1:76160605-76160624 Msa1039060:intron 30.0%
! TCTTTTCACACATAATATGG+GGG + chr7_1:76160653-76160672 Msa1039060:intron 30.0%
ATTTAATGTCTACCGACAAA+GGG - chr7_1:76160695-76160714 None:intergenic 30.0%
TAAAGTCTACTATCACTAAG+TGG - chr7_1:76160870-76160889 None:intergenic 30.0%
TTAGTGATAGTAGACTTTAG+TGG + chr7_1:76160871-76160890 Msa1039060:intron 30.0%
!!! CCTATCTAATTTTTTTACCC+AGG - chr7_1:76160955-76160974 None:intergenic 30.0%
CCTGGGTAAAAAAATTAGAT+AGG + chr7_1:76160952-76160971 Msa1039060:intron 30.0%
! ATGGAACAGATTTTATGCAT+CGG + chr7_1:76161149-76161168 Msa1039060:CDS 30.0%
AAAACTATGGGATGATTAAG+TGG - chr7_1:76161228-76161247 None:intergenic 30.0%
! TGCATTTCTCCATTTTGTAT+TGG + chr7_1:76161308-76161327 Msa1039060:CDS 30.0%
AACGTGGAAATTAAGTTCAT+AGG - chr7_1:76161658-76161677 None:intergenic 30.0%
TATGAACTTAATTTCCACGT+TGG + chr7_1:76161657-76161676 Msa1039060:CDS 30.0%
!!! AGGCCTCTATATTGTTTTTA+TGG + chr7_1:76161785-76161804 Msa1039060:CDS 30.0%
CTGCCATAAAAACAATATAG+AGG - chr7_1:76161791-76161810 None:intergenic 30.0%
!! CAAAACTTGTGTTTTTGAAC+AGG - chr7_1:76161878-76161897 None:intergenic 30.0%
!!! ATTTTTTGCACAAAACGGAA+CGG - chr7_1:76161969-76161988 None:intergenic 30.0%
!!! ACTGGATTTTTTGCACAAAA+CGG - chr7_1:76161974-76161993 None:intergenic 30.0%
AGAGATTGGGTTTCAAATTA+GGG - chr7_1:76162080-76162099 None:intergenic 30.0%
AAGAGATTGGGTTTCAAATT+AGG - chr7_1:76162081-76162100 None:intergenic 30.0%
AACGAGATATCAAAGAGATT+GGG - chr7_1:76162093-76162112 None:intergenic 30.0%
! GCAATGAGTTGGATTTATTA+AGG - chr7_1:76162122-76162141 None:intergenic 30.0%
!!! GTGTATTTTAGAATGCACTA+AGG - chr7_1:76162154-76162173 None:intergenic 30.0%
TCTTTCTCTATTGAAGATTG+AGG + chr7_1:76162270-76162289 Msa1039060:three_prime_UTR 30.0%
AACACCAAACTGAAATTTGT+TGG - chr7_1:76162421-76162440 None:intergenic 30.0%
AAATGACCTTCAAAACTTCA+TGG - chr7_1:76162451-76162470 None:intergenic 30.0%
TGCACAAGATAATTGGAATT+TGG - chr7_1:76162692-76162711 None:intergenic 30.0%
ACAAACTTGCACAAGATAAT+TGG - chr7_1:76162699-76162718 None:intergenic 30.0%
CTTTCATGTCTCTTAGAATT+TGG + chr7_1:76162994-76163013 Msa1039060:intron 30.0%
TTAACTCATCCTTACAAAAC+TGG + chr7_1:76163024-76163043 Msa1039060:intron 30.0%
TTTAAGAGGAAACGTGTTAA+TGG - chr7_1:76163240-76163259 None:intergenic 30.0%
!!! TTTTAAGCATTGGCTTTAAG+AGG - chr7_1:76163254-76163273 None:intergenic 30.0%
! CAGGTTTTCATTTTAAGCAT+TGG - chr7_1:76163264-76163283 None:intergenic 30.0%
!! GAAGATAGGACTTGTTAATT+TGG + chr7_1:76163311-76163330 Msa1039060:intron 30.0%
!! GACTTGTTAATTTGGAGATA+CGG + chr7_1:76163319-76163338 Msa1039060:intron 30.0%
TACAGAAGATGAAAGAACAA+AGG - chr7_1:76163405-76163424 None:intergenic 30.0%
GAAATATACAAGAACGCTTT+GGG - chr7_1:76163571-76163590 None:intergenic 30.0%
TGAAATATACAAGAACGCTT+TGG - chr7_1:76163572-76163591 None:intergenic 30.0%
AAACAGAATTGTTTCAGTGA+GGG + chr7_1:76163635-76163654 Msa1039060:intron 30.0%
AGGAAATCTATAAGTAGCAA+TGG + chr7_1:76163664-76163683 Msa1039060:intron 30.0%
!! AATACTTGTTATCTGTACCA+CGG - chr7_1:76164330-76164349 None:intergenic 30.0%
TAACTGTAGACAAGAAATGT+TGG + chr7_1:76164399-76164418 Msa1039060:three_prime_UTR 30.0%
! CTGTATTTTATTGTTCTGTG+TGG + chr7_1:76164617-76164636 Msa1039060:three_prime_UTR 30.0%
! GGATTATTTCTTCACTTCTT+GGG + chr7_1:76164719-76164738 Msa1039060:three_prime_UTR 30.0%
! TTCGAAGTGAACTTAACTTT+TGG + chr7_1:76164784-76164803 Msa1039060:three_prime_UTR 30.0%
! AAGTGAACTTAACTTTTGGA+TGG + chr7_1:76164788-76164807 Msa1039060:three_prime_UTR 30.0%
TGCAATGCAACAATATAGAA+AGG - chr7_1:76164867-76164886 None:intergenic 30.0%
TTCTATATTGTTGCATTGCA+TGG + chr7_1:76164867-76164886 Msa1039060:three_prime_UTR 30.0%
TAACACTGGTCCTAAAAAAT+TGG - chr7_1:76164925-76164944 None:intergenic 30.0%
!!! AATTTTTTAGGACCAGTGTT+AGG + chr7_1:76164924-76164943 Msa1039060:three_prime_UTR 30.0%
! AGAAGATGATAATGAGAGTG+AGG - chr7_1:76158716-76158735 None:intergenic 35.0%
GTTGTTGTGATTAAGAGAGA+TGG - chr7_1:76158759-76158778 None:intergenic 35.0%
TAGTTGTGACGATTGAGAAA+TGG - chr7_1:76158956-76158975 None:intergenic 35.0%
! GCGTTCTATCTTTTCTTTGT+TGG + chr7_1:76159296-76159315 Msa1039060:CDS 35.0%
! GTTTTACATGGATTTGGGAA+TGG + chr7_1:76159325-76159344 Msa1039060:CDS 35.0%
!! ATTTCGTGGATCTTTTGGTT+CGG + chr7_1:76159451-76159470 Msa1039060:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr7_1:76159570-76159589 Msa1039060:intron 35.0%
!!! TTTTTTTTTTGGTAGTGGCC+GGG - chr7_1:76159605-76159624 None:intergenic 35.0%
ATACGTGTGCTTCATAGTTA+TGG + chr7_1:76159624-76159643 Msa1039060:intron 35.0%
TACGTGTGCTTCATAGTTAT+GGG + chr7_1:76159625-76159644 Msa1039060:intron 35.0%
!! AGGTTTGTTAAACACTTGCA+CGG + chr7_1:76159861-76159880 Msa1039060:intron 35.0%
ACATCAAATGAATAGCTCCA+AGG - chr7_1:76160078-76160097 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr7_1:76160232-76160251 Msa1039060:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr7_1:76160293-76160312 Msa1039060:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG - chr7_1:76160348-76160367 None:intergenic 35.0%
GGTATATGTTTCTCAAGTTC+TGG + chr7_1:76160539-76160558 Msa1039060:intron 35.0%
GATTTAATGTCTACCGACAA+AGG - chr7_1:76160696-76160715 None:intergenic 35.0%
TGTCGGTAGACATTAAATCA+AGG + chr7_1:76160697-76160716 Msa1039060:intron 35.0%
TGATCATAGTAGCATCAACT+AGG - chr7_1:76160796-76160815 None:intergenic 35.0%
GAAATCTGTAAGCAGAGTAT+GGG - chr7_1:76161063-76161082 None:intergenic 35.0%
AGGGATTGTCAATCTTAAGA+GGG - chr7_1:76161112-76161131 None:intergenic 35.0%
TAAAATCTGTTCCATTGCGA+TGG - chr7_1:76161144-76161163 None:intergenic 35.0%
TGAGTTACATGCATACAAGA+GGG - chr7_1:76161199-76161218 None:intergenic 35.0%
ATGAGTTACATGCATACAAG+AGG - chr7_1:76161200-76161219 None:intergenic 35.0%
!! ACAGAGGGAAAAGAGTATTA+GGG - chr7_1:76161257-76161276 None:intergenic 35.0%
CCAACAAGCATGTTAAACAT+TGG - chr7_1:76161588-76161607 None:intergenic 35.0%
CCAATGTTTAACATGCTTGT+TGG + chr7_1:76161585-76161604 Msa1039060:CDS 35.0%
! TTTAACATGCTTGTTGGTCT+TGG + chr7_1:76161591-76161610 Msa1039060:CDS 35.0%
!!! TTTTTTGCACAAAACGGAAC+GGG - chr7_1:76161968-76161987 None:intergenic 35.0%
AAAATCCAGTTCTTGATACC+TGG + chr7_1:76161984-76162003 Msa1039060:three_prime_UTR 35.0%
GAGATTGGGTTTCAAATTAG+GGG - chr7_1:76162079-76162098 None:intergenic 35.0%
CAACGAGATATCAAAGAGAT+TGG - chr7_1:76162094-76162113 None:intergenic 35.0%
TTCAAGAGAAGAAAGCTTCA+AGG - chr7_1:76162373-76162392 None:intergenic 35.0%
ATGATTCTCTCTATGCTTTC+TGG + chr7_1:76162555-76162574 Msa1039060:intron 35.0%
TGATTCTCTCTATGCTTTCT+GGG + chr7_1:76162556-76162575 Msa1039060:intron 35.0%
! TGGGTTTTCTTGCACAAATT+TGG + chr7_1:76162575-76162594 Msa1039060:intron 35.0%
!! TTTTGGTGGTATTAAGCTTG+TGG + chr7_1:76162634-76162653 Msa1039060:intron 35.0%
!! AGTTTTATGCTGAATCTGCT+TGG + chr7_1:76162731-76162750 Msa1039060:intron 35.0%
ATGTCTCTTAGAATTTGGGT+TGG + chr7_1:76162999-76163018 Msa1039060:intron 35.0%
!! CCTTAAATGCCAGTTTTGTA+AGG - chr7_1:76163036-76163055 None:intergenic 35.0%
CCTTACAAAACTGGCATTTA+AGG + chr7_1:76163033-76163052 Msa1039060:intron 35.0%
! AAAACTGGCATTTAAGGTGT+GGG + chr7_1:76163039-76163058 Msa1039060:intron 35.0%
TCCAACACTTTCATTGTGTA+GGG - chr7_1:76163137-76163156 None:intergenic 35.0%
! ACGTGTTAATGGACATTGTT+GGG - chr7_1:76163229-76163248 None:intergenic 35.0%
! AACGTGTTAATGGACATTGT+TGG - chr7_1:76163230-76163249 None:intergenic 35.0%
TAATCATCATCTCACTCTTC+AGG - chr7_1:76163283-76163302 None:intergenic 35.0%
!!! AAGGGGCTATTTTGATAACA+TGG + chr7_1:76163368-76163387 Msa1039060:intron 35.0%
!!! AGGGGCTATTTTGATAACAT+GGG + chr7_1:76163369-76163388 Msa1039060:intron 35.0%
ATCACCGAAGAAAAATGAGA+AGG - chr7_1:76163462-76163481 None:intergenic 35.0%
GAAACAGAATTGTTTCAGTG+AGG + chr7_1:76163634-76163653 Msa1039060:intron 35.0%
TTGTGGCTGTAACAATAGTT+TGG + chr7_1:76163702-76163721 Msa1039060:intron 35.0%
TAAATAACAGGTATGTGGCA+AGG - chr7_1:76163749-76163768 None:intergenic 35.0%
ACAAGAAACGGCTAAATCAT+AGG - chr7_1:76163792-76163811 None:intergenic 35.0%
!!! CTTTTTTCCATTTGATGCTC+TGG - chr7_1:76163875-76163894 None:intergenic 35.0%
! CTTTCCATAACGATTTTCCT+AGG + chr7_1:76164376-76164395 Msa1039060:three_prime_UTR 35.0%
GTTACCTAGGAAAATCGTTA+TGG - chr7_1:76164383-76164402 None:intergenic 35.0%
TTTCTTGTCTACAGTTACCT+AGG - chr7_1:76164396-76164415 None:intergenic 35.0%
! AAAAGCATGAGGAATAGCAA+TGG + chr7_1:76164431-76164450 Msa1039060:three_prime_UTR 35.0%
GTCAAATACGCATAAACTTG+TGG - chr7_1:76164466-76164485 None:intergenic 35.0%
TGTACTTGCAACAAATTTCC+AGG - chr7_1:76164490-76164509 None:intergenic 35.0%
!! AATTTGTTGCAAGTACATCC+CGG + chr7_1:76164493-76164512 Msa1039060:three_prime_UTR 35.0%
TGGAAACAACCAATAAGAAC+AGG - chr7_1:76164524-76164543 None:intergenic 35.0%
CCATTACATCATTTGACTAG+TGG - chr7_1:76164544-76164563 None:intergenic 35.0%
CCACTAGTCAAATGATGTAA+TGG + chr7_1:76164541-76164560 Msa1039060:three_prime_UTR 35.0%
GGAATTACAAAAGCTGAAGT+GGG + chr7_1:76164696-76164715 Msa1039060:three_prime_UTR 35.0%
GAATTACAAAAGCTGAAGTG+GGG + chr7_1:76164697-76164716 Msa1039060:three_prime_UTR 35.0%
AATTACAAAAGCTGAAGTGG+GGG + chr7_1:76164698-76164717 Msa1039060:three_prime_UTR 35.0%
! GGGATTATTTCTTCACTTCT+TGG + chr7_1:76164718-76164737 Msa1039060:three_prime_UTR 35.0%
TACTTTGACTGCACAAAACT+TGG + chr7_1:76164832-76164851 Msa1039060:three_prime_UTR 35.0%
! ATGGTTAAGAAGCAGTTTTC+CGG + chr7_1:76164886-76164905 Msa1039060:three_prime_UTR 35.0%
! TGTTTTGCCAACAATCCATT+TGG - chr7_1:76164962-76164981 None:intergenic 35.0%
GCTAGAAGGTTAATACTAGA+AGG + chr7_1:76165000-76165019 Msa1039060:three_prime_UTR 35.0%
AGGAATAAGAAAGAACTGAG+TGG + chr7_1:76165020-76165039 Msa1039060:three_prime_UTR 35.0%
GGAATAAGAAAGAACTGAGT+GGG + chr7_1:76165021-76165040 Msa1039060:three_prime_UTR 35.0%
GAATAAGAAAGAACTGAGTG+GGG + chr7_1:76165022-76165041 Msa1039060:three_prime_UTR 35.0%
! GAGGATTAGTGAGAGTGAAA+TGG - chr7_1:76158697-76158716 None:intergenic 40.0%
GTGATTAAGAGAGATGGAGA+GGG - chr7_1:76158753-76158772 None:intergenic 40.0%
TGTGATTAAGAGAGATGGAG+AGG - chr7_1:76158754-76158773 None:intergenic 40.0%
TGATGAGGATGTAGAAATGG+AGG - chr7_1:76158920-76158939 None:intergenic 40.0%
GATTGAGAAATGGTGAGAAG+CGG - chr7_1:76158946-76158965 None:intergenic 40.0%
! ATTTTTCTATGGCAAGCCGT+TGG + chr7_1:76159266-76159285 Msa1039060:CDS 40.0%
ATAGAACGCAACGAATCCAA+CGG - chr7_1:76159285-76159304 None:intergenic 40.0%
!! CTTTTACGACCAAAAAGCGT+CGG + chr7_1:76159397-76159416 Msa1039060:CDS 40.0%
!!! TTTTACGACCAAAAAGCGTC+GGG + chr7_1:76159398-76159417 Msa1039060:CDS 40.0%
AAACACACTTCTGGATTTCG+TGG + chr7_1:76159437-76159456 Msa1039060:CDS 40.0%
! TCTGGATTTCGTGGATCTTT+TGG + chr7_1:76159446-76159465 Msa1039060:CDS 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr7_1:76159571-76159590 Msa1039060:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr7_1:76159572-76159591 Msa1039060:intron 40.0%
!!! TTTTTTTTTGGTAGTGGCCG+GGG - chr7_1:76159604-76159623 None:intergenic 40.0%
ACGTGTGCTTCATAGTTATG+GGG + chr7_1:76159626-76159645 Msa1039060:intron 40.0%
!! GGTTTGTTAAACACTTGCAC+GGG + chr7_1:76159862-76159881 Msa1039060:intron 40.0%
TAACCTTGAAACAATGGCCT+TGG + chr7_1:76160058-76160077 Msa1039060:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr7_1:76160280-76160299 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr7_1:76160318-76160337 Msa1039060:intron 40.0%
!! ATGTTTCTCAAGTTCTGGAC+AGG + chr7_1:76160544-76160563 Msa1039060:intron 40.0%
TTTCACACATAATATGGGGG+AGG + chr7_1:76160656-76160675 Msa1039060:intron 40.0%
GACATTAAATCAAGGACAGC+TGG + chr7_1:76160705-76160724 Msa1039060:intron 40.0%
GAAATGTTATGCATCGTGTG+TGG + chr7_1:76160974-76160993 Msa1039060:intron 40.0%
GGAAATCTGTAAGCAGAGTA+TGG - chr7_1:76161064-76161083 None:intergenic 40.0%
ACTCTGCTTACAGATTTCCA+AGG + chr7_1:76161065-76161084 Msa1039060:intron 40.0%
CTTACAGATTTCCAAGGCAT+GGG + chr7_1:76161071-76161090 Msa1039060:intron 40.0%
AATCTTAAGAGGGTTGAGAC+AGG - chr7_1:76161102-76161121 None:intergenic 40.0%
GAGGGATTGTCAATCTTAAG+AGG - chr7_1:76161113-76161132 None:intergenic 40.0%
! TAGTGGACAAAGAGCGATAT+TGG - chr7_1:76161175-76161194 None:intergenic 40.0%
TTAGGGAGGAGGAAAACTAT+GGG - chr7_1:76161240-76161259 None:intergenic 40.0%
ATTAGGGAGGAGGAAAACTA+TGG - chr7_1:76161241-76161260 None:intergenic 40.0%
!! CACAGAGGGAAAAGAGTATT+AGG - chr7_1:76161258-76161277 None:intergenic 40.0%
! CTAATACTCTTTTCCCTCTG+TGG + chr7_1:76161256-76161275 Msa1039060:CDS 40.0%
GAAGCTTGTCATGAACACTA+CGG - chr7_1:76161283-76161302 None:intergenic 40.0%
CCAAAACACACTCATAACGA+AGG - chr7_1:76161379-76161398 None:intergenic 40.0%
! CCTTCGTTATGAGTGTGTTT+TGG + chr7_1:76161376-76161395 Msa1039060:CDS 40.0%
! TTTTGGATATCTACCACAGC+TGG + chr7_1:76161393-76161412 Msa1039060:CDS 40.0%
GTGAATTGCCTTGAAGCTTT+AGG + chr7_1:76161423-76161442 Msa1039060:CDS 40.0%
ATGCAATCACTATACCAACG+TGG - chr7_1:76161674-76161693 None:intergenic 40.0%
!! TTCCTGCTTTTAAGCCTCAT+GGG + chr7_1:76161699-76161718 Msa1039060:CDS 40.0%
GGTCTCTCTTAGTAATCACT+TGG + chr7_1:76161721-76161740 Msa1039060:CDS 40.0%
AGAAACCAGGTATCAAGAAC+TGG - chr7_1:76161992-76162011 None:intergenic 40.0%
!! TAGTTAGGGTTTTTCAGCTG+TGG - chr7_1:76162048-76162067 None:intergenic 40.0%
GGTTTCAAATTAGGGGATAG+GGG - chr7_1:76162072-76162091 None:intergenic 40.0%
GGGTTTCAAATTAGGGGATA+GGG - chr7_1:76162073-76162092 None:intergenic 40.0%
TGGGTTTCAAATTAGGGGAT+AGG - chr7_1:76162074-76162093 None:intergenic 40.0%
AGCTTTCTTCTCTTGAAGCT+CGG + chr7_1:76162376-76162395 Msa1039060:intron 40.0%
!! CACTCTCCATGAAGTTTTGA+AGG + chr7_1:76162442-76162461 Msa1039060:three_prime_UTR 40.0%
!! TTTTGAAGGTCATTTCCTGC+AGG + chr7_1:76162456-76162475 Msa1039060:three_prime_UTR 40.0%
!! GCTATGGTGCTAATGAGTTT+TGG + chr7_1:76162617-76162636 Msa1039060:intron 40.0%
!! ATGGTGCTAATGAGTTTTGG+TGG + chr7_1:76162620-76162639 Msa1039060:intron 40.0%
CAGAGTCATGCATATGCATA+TGG + chr7_1:76162759-76162778 Msa1039060:intron 40.0%
AGTCATGCATATGCATATGG+TGG + chr7_1:76162762-76162781 Msa1039060:intron 40.0%
GTCATGCATATGCATATGGT+GGG + chr7_1:76162763-76162782 Msa1039060:intron 40.0%
ACATCAGGACATTGGCATTT+AGG + chr7_1:76162854-76162873 Msa1039060:intron 40.0%
CATCAGGACATTGGCATTTA+GGG + chr7_1:76162855-76162874 Msa1039060:intron 40.0%
! CAAAACTGGCATTTAAGGTG+TGG + chr7_1:76163038-76163057 Msa1039060:intron 40.0%
ATTTAGTCCCACATTGCCTA+GGG - chr7_1:76163100-76163119 None:intergenic 40.0%
TTCATTGTGTAGGGTGTGAA+GGG - chr7_1:76163128-76163147 None:intergenic 40.0%
TTTCATTGTGTAGGGTGTGA+AGG - chr7_1:76163129-76163148 None:intergenic 40.0%
! ACCCTACACAATGAAAGTGT+TGG + chr7_1:76163133-76163152 Msa1039060:intron 40.0%
CTCCAACACTTTCATTGTGT+AGG - chr7_1:76163138-76163157 None:intergenic 40.0%
!! CTACACAATGAAAGTGTTGG+AGG + chr7_1:76163136-76163155 Msa1039060:intron 40.0%
GCTGCATAATTACGGCATTT+GGG - chr7_1:76163177-76163196 None:intergenic 40.0%
AGCTGCATAATTACGGCATT+TGG - chr7_1:76163178-76163197 None:intergenic 40.0%
TGCCTCTAGCTGCATAATTA+CGG - chr7_1:76163185-76163204 None:intergenic 40.0%
!! GTCGCCTTCTCATTTTTCTT+CGG + chr7_1:76163455-76163474 Msa1039060:intron 40.0%
CTGTTCAGACAGAAGGTTAT+TGG + chr7_1:76163503-76163522 Msa1039060:intron 40.0%
!! CCATTTTTGACAAAGTGACC+CGG + chr7_1:76163592-76163611 Msa1039060:intron 40.0%
TATAACTCTTCCATGATGCC+GGG - chr7_1:76163613-76163632 None:intergenic 40.0%
CTATAACTCTTCCATGATGC+CGG - chr7_1:76163614-76163633 None:intergenic 40.0%
!! GTAGCAATGGCTTTAAGACA+CGG + chr7_1:76163677-76163696 Msa1039060:intron 40.0%
GATTGCAATACCTGTCACAT+TGG - chr7_1:76163839-76163858 None:intergenic 40.0%
! CTTACTACCAGAGCATCAAA+TGG + chr7_1:76163865-76163884 Msa1039060:three_prime_UTR 40.0%
TTCAATTCAAGAAGGCCTGT+CGG + chr7_1:76163909-76163928 Msa1039060:three_prime_UTR 40.0%
AAAATAGGTCAACCAACACC+AGG - chr7_1:76164063-76164082 None:intergenic 40.0%
!!! CTTTTTCAGCGCTCTTTGAA+TGG + chr7_1:76164302-76164321 Msa1039060:intron 40.0%
! GGAACTATGTGAAAAGCATG+AGG + chr7_1:76164420-76164439 Msa1039060:three_prime_UTR 40.0%
TGAGGAATAGCAATGGAAAG+TGG + chr7_1:76164438-76164457 Msa1039060:three_prime_UTR 40.0%
GTTTATGCGTATTTGACACC+TGG + chr7_1:76164469-76164488 Msa1039060:three_prime_UTR 40.0%
!! CGACATTAGCTAAGAGCATT+TGG + chr7_1:76164594-76164613 Msa1039060:three_prime_UTR 40.0%
!!! TCTTTGTCACTTTTACACGG+TGG + chr7_1:76164671-76164690 Msa1039060:three_prime_UTR 40.0%
CGGAATTACAAAAGCTGAAG+TGG + chr7_1:76164695-76164714 Msa1039060:three_prime_UTR 40.0%
! TGGTTAAGAAGCAGTTTTCC+GGG + chr7_1:76164887-76164906 Msa1039060:three_prime_UTR 40.0%
!! GAGAGGAGAGAGTATTATCA+AGG + chr7_1:76165115-76165134 Msa1039060:three_prime_UTR 40.0%
ATTAAGAGAGATGGAGAGGG+AGG - chr7_1:76158750-76158769 None:intergenic 45.0%
TTGAGGAGTGATCTACGAAG+AGG - chr7_1:76158786-76158805 None:intergenic 45.0%
TGGATTGAATGGGGCAAGAT+GGG - chr7_1:76158818-76158837 None:intergenic 45.0%
TTGGATTGAATGGGGCAAGA+TGG - chr7_1:76158819-76158838 None:intergenic 45.0%
TCTTGCCCCATTCAATCCAA+TGG + chr7_1:76158819-76158838 Msa1039060:CDS 45.0%
ATGCCGCCATTGGATTGAAT+GGG - chr7_1:76158828-76158847 None:intergenic 45.0%
GGAAAATGCAGTGGTAGTTG+AGG - chr7_1:76158851-76158870 None:intergenic 45.0%
GAGTTTGAGGGAAAATGCAG+TGG - chr7_1:76158860-76158879 None:intergenic 45.0%
TTGAGAGGATGGGAGTTTGA+GGG - chr7_1:76158872-76158891 None:intergenic 45.0%
ATTGAGAGGATGGGAGTTTG+AGG - chr7_1:76158873-76158892 None:intergenic 45.0%
GAAATGGAGGATGAGGAGAA+TGG - chr7_1:76158907-76158926 None:intergenic 45.0%
GGATGTAGAAATGGAGGATG+AGG - chr7_1:76158914-76158933 None:intergenic 45.0%
CCATACTAGGAGAGAGATTG+AGG - chr7_1:76158992-76159011 None:intergenic 45.0%
CCTCAATCTCTCTCCTAGTA+TGG + chr7_1:76158989-76159008 Msa1039060:CDS 45.0%
ACACTTCTTGCTCTCGGTAA+CGG + chr7_1:76159020-76159039 Msa1039060:CDS 45.0%
! TTCGTCTCTGCTCTTGTTGT+CGG + chr7_1:76159128-76159147 Msa1039060:CDS 45.0%
ACATCTCTAACAAACGGCGT+CGG - chr7_1:76159191-76159210 None:intergenic 45.0%
TGGATTTGGGAATGGCCAAT+CGG + chr7_1:76159333-76159352 Msa1039060:CDS 45.0%
! AGAACTCTTTTCCCTCCGAT+TGG - chr7_1:76159351-76159370 None:intergenic 45.0%
AAAGAGTTCTGCGGATCTTG+AGG + chr7_1:76159361-76159380 Msa1039060:CDS 45.0%
AAGAGTTCTGCGGATCTTGA+GGG + chr7_1:76159362-76159381 Msa1039060:CDS 45.0%
!! CGACGCTTTTTGGTCGTAAA+AGG - chr7_1:76159399-76159418 None:intergenic 45.0%
CGTGTGCTTCATAGTTATGG+GGG + chr7_1:76159627-76159646 Msa1039060:intron 45.0%
GTGTGCTTCATAGTTATGGG+GGG + chr7_1:76159628-76159647 Msa1039060:intron 45.0%
! GATCTAAAACCAAACGCTGC+AGG + chr7_1:76160024-76160043 Msa1039060:intron 45.0%
TATGGTTAACCTGCAGCGTT+TGG - chr7_1:76160036-76160055 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr7_1:76160279-76160298 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr7_1:76160302-76160321 Msa1039060:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr7_1:76160312-76160331 Msa1039060:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_1:76160458-76160477 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_1:76160459-76160478 None:intergenic 45.0%
TAGCCAGTTGATCCCTTTGT+CGG + chr7_1:76160680-76160699 Msa1039060:intron 45.0%
GGTCAGTGGTCAACGTAATT+TGG - chr7_1:76160775-76160794 None:intergenic 45.0%
AGTAGCATCAACTAGGTCAG+TGG - chr7_1:76160789-76160808 None:intergenic 45.0%
GCTTACAGATTTCCAAGGCA+TGG + chr7_1:76161070-76161089 Msa1039060:intron 45.0%
!! GGAAAAGAGTATTAGGGAGG+AGG - chr7_1:76161251-76161270 None:intergenic 45.0%
!! GAGGGAAAAGAGTATTAGGG+AGG - chr7_1:76161254-76161273 None:intergenic 45.0%
!! AGGCAAATGCTCTGCTTTTG+GGG - chr7_1:76161343-76161362 None:intergenic 45.0%
!! CAGGCAAATGCTCTGCTTTT+GGG - chr7_1:76161344-76161363 None:intergenic 45.0%
! ACAGGCAAATGCTCTGCTTT+TGG - chr7_1:76161345-76161364 None:intergenic 45.0%
! AAAAGCAGAGCATTTGCCTG+TGG + chr7_1:76161344-76161363 Msa1039060:CDS 45.0%
TGAATTTCCCCATGCTAGCA+CGG - chr7_1:76161487-76161506 None:intergenic 45.0%
CTAGCATGGGGAAATTCAGT+GGG + chr7_1:76161489-76161508 Msa1039060:CDS 45.0%
TAGCATGGGGAAATTCAGTG+GGG + chr7_1:76161490-76161509 Msa1039060:CDS 45.0%
GATGTTGCAGTTGCTAAAGC+TGG + chr7_1:76161525-76161544 Msa1039060:CDS 45.0%
AGTTGCTAAAGCTGGTCATC+CGG + chr7_1:76161533-76161552 Msa1039060:CDS 45.0%
!! TGTTGGTCTTGGAACTGCTT+TGG + chr7_1:76161602-76161621 Msa1039060:CDS 45.0%
!! GTTCCTGCTTTTAAGCCTCA+TGG + chr7_1:76161698-76161717 Msa1039060:CDS 45.0%
!! TCCTGCTTTTAAGCCTCATG+GGG + chr7_1:76161700-76161719 Msa1039060:CDS 45.0%
TTACTAAGAGAGACCCCATG+AGG - chr7_1:76161716-76161735 None:intergenic 45.0%
AAAACCTAGGCACTCGGAAT+CGG - chr7_1:76161749-76161768 None:intergenic 45.0%
! ATTCCGAGTGCCTAGGTTTT+GGG + chr7_1:76161749-76161768 Msa1039060:CDS 45.0%
AGACAGAATCCCCAAAACCT+AGG - chr7_1:76161762-76161781 None:intergenic 45.0%
!! TTTTGGGGATTCTGTCTCGT+AGG + chr7_1:76161765-76161784 Msa1039060:CDS 45.0%
!! TAGGGGATAGGGGTTAGTTA+GGG - chr7_1:76162062-76162081 None:intergenic 45.0%
!! TTAGGGGATAGGGGTTAGTT+AGG - chr7_1:76162063-76162082 None:intergenic 45.0%
! TCACGCACTCTCTGATTTGT+TGG + chr7_1:76162484-76162503 Msa1039060:intron 45.0%
TGGTGGTATTAAGCTTGTGG+TGG + chr7_1:76162637-76162656 Msa1039060:intron 45.0%
GGTGGTATTAAGCTTGTGGT+GGG + chr7_1:76162638-76162657 Msa1039060:intron 45.0%
GTGGTATTAAGCTTGTGGTG+GGG + chr7_1:76162639-76162658 Msa1039060:intron 45.0%
! TGAGTTGAGTAGCAGACATC+AGG + chr7_1:76162839-76162858 Msa1039060:intron 45.0%
AGTAGCAGACATCAGGACAT+TGG + chr7_1:76162846-76162865 Msa1039060:intron 45.0%
GGACATTGGCATTTAGGGAA+TGG + chr7_1:76162860-76162879 Msa1039060:intron 45.0%
ACTACACATGCCATATCCCT+AGG + chr7_1:76163081-76163100 Msa1039060:intron 45.0%
GATTTAGTCCCACATTGCCT+AGG - chr7_1:76163101-76163120 None:intergenic 45.0%
TCATTGTGTAGGGTGTGAAG+GGG - chr7_1:76163127-76163146 None:intergenic 45.0%
TGCCGTAATTATGCAGCTAG+AGG + chr7_1:76163180-76163199 Msa1039060:intron 45.0%
TTTCTTCGGTGATGTCTGCA+TGG + chr7_1:76163469-76163488 Msa1039060:intron 45.0%
TTCTTCGGTGATGTCTGCAT+GGG + chr7_1:76163470-76163489 Msa1039060:intron 45.0%
TGTGAGTCTGTTCAGACAGA+AGG + chr7_1:76163496-76163515 Msa1039060:intron 45.0%
! CCGGGTCACTTTGTCAAAAA+TGG - chr7_1:76163595-76163614 None:intergenic 45.0%
CGGCATCATGGAAGAGTTAT+AGG + chr7_1:76163612-76163631 Msa1039060:intron 45.0%
TGTTTCAGTGAGGGTTGTGA+AGG + chr7_1:76163644-76163663 Msa1039060:intron 45.0%
!! GGCTTTAAGACACGGTATTG+TGG + chr7_1:76163685-76163704 Msa1039060:intron 45.0%
TCCTTGTTCTCCAATGTGAC+AGG + chr7_1:76163826-76163845 Msa1039060:intron 45.0%
ACCTGTCACATTGGAGAACA+AGG - chr7_1:76163830-76163849 None:intergenic 45.0%
TCAATTCAAGAAGGCCTGTC+GGG + chr7_1:76163910-76163929 Msa1039060:three_prime_UTR 45.0%
GAGCAGTGCAGGTATAACTT+TGG + chr7_1:76163962-76163981 Msa1039060:intron 45.0%
CAATAAGAACAGGTGCTTCC+GGG - chr7_1:76164514-76164533 None:intergenic 45.0%
CCAATAAGAACAGGTGCTTC+CGG - chr7_1:76164515-76164534 None:intergenic 45.0%
TGCTCTTAGCTAATGTCGTG+TGG - chr7_1:76164592-76164611 None:intergenic 45.0%
!!! TGTCACTTTTACACGGTGGT+CGG + chr7_1:76164675-76164694 Msa1039060:three_prime_UTR 45.0%
CTCTCAAGCTTAGTGCTAGA+AGG + chr7_1:76164986-76165005 Msa1039060:three_prime_UTR 45.0%
AAGATGGGGCGATGTTGTTG+AGG - chr7_1:76158803-76158822 None:intergenic 50.0%
GGATTGAATGGGGCAAGATG+GGG - chr7_1:76158817-76158836 None:intergenic 50.0%
TGCCCCATTCAATCCAATGG+CGG + chr7_1:76158822-76158841 Msa1039060:CDS 50.0%
TGCCGCCATTGGATTGAATG+GGG - chr7_1:76158827-76158846 None:intergenic 50.0%
GATGCCGCCATTGGATTGAA+TGG - chr7_1:76158829-76158848 None:intergenic 50.0%
ATGAGGAGAATGGAGAGGGA+GGG - chr7_1:76158897-76158916 None:intergenic 50.0%
GAGGATGAGGAGAATGGAGA+GGG - chr7_1:76158901-76158920 None:intergenic 50.0%
!! GGTGAGAAGCGGTTTTGATG+AGG - chr7_1:76158935-76158954 None:intergenic 50.0%
! ACCGAGAGCAAGAAGTGTGA+CGG - chr7_1:76159018-76159037 None:intergenic 50.0%
! AAGAGCAGAGACGAAAGCAC+CGG - chr7_1:76159123-76159142 None:intergenic 50.0%
! AACAAACGGCGTCGGATCAA+CGG - chr7_1:76159183-76159202 None:intergenic 50.0%
ATTTGGGAATGGCCAATCGG+AGG + chr7_1:76159336-76159355 Msa1039060:CDS 50.0%
TTTGGGAATGGCCAATCGGA+GGG + chr7_1:76159337-76159356 Msa1039060:CDS 50.0%
TCGGAGGGAAAAGAGTTCTG+CGG + chr7_1:76159352-76159371 Msa1039060:CDS 50.0%
! CTACAGATCCCGACGCTTTT+TGG - chr7_1:76159409-76159428 None:intergenic 50.0%
GCTCCAAGGCCATTGTTTCA+AGG - chr7_1:76160064-76160083 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr7_1:76160454-76160473 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_1:76160460-76160479 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_1:76160457-76160476 Msa1039060:intron 50.0%
CTACCGACAAAGGGATCAAC+TGG - chr7_1:76160686-76160705 None:intergenic 50.0%
AGCAGAGTATGGGATACGTC+AGG - chr7_1:76161053-76161072 None:intergenic 50.0%
!! ATTGCGATGGTGCTGGTTGA+GGG - chr7_1:76161131-76161150 None:intergenic 50.0%
CATGCATACAAGAGGGCTAG+TGG - chr7_1:76161192-76161211 None:intergenic 50.0%
TGAACACTACGGACCACAGA+GGG - chr7_1:76161272-76161291 None:intergenic 50.0%
ATGAACACTACGGACCACAG+AGG - chr7_1:76161273-76161292 None:intergenic 50.0%
!! GGCAAATGCTCTGCTTTTGG+GGG - chr7_1:76161342-76161361 None:intergenic 50.0%
GAAGCGTGCCTAAAGCTTCA+AGG - chr7_1:76161434-76161453 None:intergenic 50.0%
GTAAGACCTAGGAATGCCTG+CGG - chr7_1:76161465-76161484 None:intergenic 50.0%
ATGCTAGCACGGTAAGACCT+AGG - chr7_1:76161476-76161495 None:intergenic 50.0%
TAGGTCTTACCGTGCTAGCA+TGG + chr7_1:76161475-76161494 Msa1039060:CDS 50.0%
AGGTCTTACCGTGCTAGCAT+GGG + chr7_1:76161476-76161495 Msa1039060:CDS 50.0%
GCTAGCATGGGGAAATTCAG+TGG + chr7_1:76161488-76161507 Msa1039060:CDS 50.0%
AGCATGGGGAAATTCAGTGG+GGG + chr7_1:76161491-76161510 Msa1039060:CDS 50.0%
TAAAGCTGGTCATCCGGCAA+TGG + chr7_1:76161539-76161558 Msa1039060:CDS 50.0%
! CATTGGTCCAGCAAAGCATC+CGG - chr7_1:76161571-76161590 None:intergenic 50.0%
ACCCCATGAGGCTTAAAAGC+AGG - chr7_1:76161704-76161723 None:intergenic 50.0%
AAACCTAGGCACTCGGAATC+GGG - chr7_1:76161748-76161767 None:intergenic 50.0%
! GATTCCGAGTGCCTAGGTTT+TGG + chr7_1:76161748-76161767 Msa1039060:CDS 50.0%
! TTCCGAGTGCCTAGGTTTTG+GGG + chr7_1:76161750-76161769 Msa1039060:CDS 50.0%
ATCCCCAAAACCTAGGCACT+CGG - chr7_1:76161755-76161774 None:intergenic 50.0%
! TGAGTTGAGTGTGAGAGACG+AGG - chr7_1:76162015-76162034 None:intergenic 50.0%
TGCCATATCCCTAGGCAATG+TGG + chr7_1:76163089-76163108 Msa1039060:intron 50.0%
GCCATATCCCTAGGCAATGT+GGG + chr7_1:76163090-76163109 Msa1039060:intron 50.0%
TCCCACATTGCCTAGGGATA+TGG - chr7_1:76163094-76163113 None:intergenic 50.0%
TGGGAATTCTGCCTTCACTG+TGG - chr7_1:76163210-76163229 None:intergenic 50.0%
TCAATGACGAAGAGCAGTGC+AGG + chr7_1:76163951-76163970 Msa1039060:three_prime_UTR 50.0%
CACCAGGTGTAGCGTACATT+GGG - chr7_1:76164047-76164066 None:intergenic 50.0%
ACACCAGGTGTAGCGTACAT+TGG - chr7_1:76164048-76164067 None:intergenic 50.0%
ATGTACGCTACACCTGGTGT+TGG + chr7_1:76164048-76164067 Msa1039060:intron 50.0%
!! CCGGAAGCACCTGTTCTTAT+TGG + chr7_1:76164512-76164531 Msa1039060:three_prime_UTR 50.0%
ACAATCCATTTGGCCCACCT+GGG - chr7_1:76164952-76164971 None:intergenic 50.0%
AACAATCCATTTGGCCCACC+TGG - chr7_1:76164953-76164972 None:intergenic 50.0%
!! AGGTGGGCCAAATGGATTGT+TGG + chr7_1:76164952-76164971 Msa1039060:three_prime_UTR 50.0%
GTAGTTGAGGATGCCGCCAT+TGG - chr7_1:76158838-76158857 None:intergenic 55.0%
AGGGAGGGGATTGAGAGGAT+GGG - chr7_1:76158882-76158901 None:intergenic 55.0%
TGAGGAGAATGGAGAGGGAG+GGG - chr7_1:76158896-76158915 None:intergenic 55.0%
GATGAGGAGAATGGAGAGGG+AGG - chr7_1:76158898-76158917 None:intergenic 55.0%
GGAGGATGAGGAGAATGGAG+AGG - chr7_1:76158902-76158921 None:intergenic 55.0%
! GAGAGCAAGAAGTGTGACGG+CGG - chr7_1:76159015-76159034 None:intergenic 55.0%
GCCGTCACACTTCTTGCTCT+CGG + chr7_1:76159014-76159033 Msa1039060:CDS 55.0%
GCGAGAGATGAGAAGACGTC+GGG - chr7_1:76159050-76159069 None:intergenic 55.0%
GGCGAGAGATGAGAAGACGT+CGG - chr7_1:76159051-76159070 None:intergenic 55.0%
!! GAAGCCGGTACGGTATTGAC+CGG - chr7_1:76159084-76159103 None:intergenic 55.0%
!! GGTCAATACCGTACCGGCTT+CGG + chr7_1:76159083-76159102 Msa1039060:CDS 55.0%
! GTATAGCACCGAAGCCGGTA+CGG - chr7_1:76159094-76159113 None:intergenic 55.0%
! GGAGAGTATAGCACCGAAGC+CGG - chr7_1:76159099-76159118 None:intergenic 55.0%
!! TTCGGTGCTATACTCTCCGC+CGG + chr7_1:76159101-76159120 Msa1039060:CDS 55.0%
! ACAAACGGCGTCGGATCAAC+GGG - chr7_1:76159182-76159201 None:intergenic 55.0%
ACTCGTGAGCTGAGCTCAGT+TGG + chr7_1:76159539-76159558 Msa1039060:intron 55.0%
GTGAGCTGAGCTCAGTTGGT+TGG + chr7_1:76159543-76159562 Msa1039060:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr7_1:76160446-76160465 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr7_1:76160445-76160464 Msa1039060:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr7_1:76160446-76160465 Msa1039060:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr7_1:76160452-76160471 Msa1039060:intron 55.0%
!! CATTGCGATGGTGCTGGTTG+AGG - chr7_1:76161132-76161151 None:intergenic 55.0%
CTCAACCAGCACCATCGCAA+TGG + chr7_1:76161130-76161149 Msa1039060:CDS 55.0%
CTGTTCCATTGCGATGGTGC+TGG - chr7_1:76161138-76161157 None:intergenic 55.0%
! AGCAGAGCATTTGCCTGTGG+TGG + chr7_1:76161347-76161366 Msa1039060:CDS 55.0%
GCATTTGCCTGTGGTGGTTG+TGG + chr7_1:76161353-76161372 Msa1039060:CDS 55.0%
ATTCACGAGCTCTCCAGCTG+TGG - chr7_1:76161409-76161428 None:intergenic 55.0%
AAACTGCCGCAGGCATTCCT+AGG + chr7_1:76161456-76161475 Msa1039060:CDS 55.0%
GGTCTTACCGTGCTAGCATG+GGG + chr7_1:76161477-76161496 Msa1039060:CDS 55.0%
TGGTCATCCGGCAATGGCAA+TGG + chr7_1:76161545-76161564 Msa1039060:CDS 55.0%
GTGAGAGACGAGGAGAAACC+AGG - chr7_1:76162005-76162024 None:intergenic 55.0%
GGGAGTCACGAGCAATGAGT+TGG - chr7_1:76162133-76162152 None:intergenic 55.0%
GAGTGCGTGAAAAGACCTGC+AGG - chr7_1:76162474-76162493 None:intergenic 55.0%
TGTGTAGGGTGTGAAGGGGA+TGG - chr7_1:76163123-76163142 None:intergenic 55.0%
CTAGAGGCAGACCACAGTGA+AGG + chr7_1:76163196-76163215 Msa1039060:intron 55.0%
GACAAAGTGACCCGGCATCA+TGG + chr7_1:76163600-76163619 Msa1039060:intron 55.0%
! AGCTTGTTCTGTTGCCCGAC+AGG - chr7_1:76163927-76163946 None:intergenic 55.0%
CTCCCAATGTACGCTACACC+TGG + chr7_1:76164042-76164061 Msa1039060:intron 55.0%
GCGCTCTTTGAATGGAACCG+TGG + chr7_1:76164310-76164329 Msa1039060:intron 55.0%
AGGACCAGTGTTAGGAACCC+AGG + chr7_1:76164932-76164951 Msa1039060:three_prime_UTR 55.0%
ACCAGTGTTAGGAACCCAGG+TGG + chr7_1:76164935-76164954 Msa1039060:three_prime_UTR 55.0%
CCAGTGTTAGGAACCCAGGT+GGG + chr7_1:76164936-76164955 Msa1039060:three_prime_UTR 55.0%
ACTGAGTGGGGTTGTCCAAG+TGG + chr7_1:76165034-76165053 Msa1039060:three_prime_UTR 55.0%
CTCTCTCTCCATCAGCCACT+TGG - chr7_1:76165052-76165071 None:intergenic 55.0%
!! TATGGGTGCTGACTGCTGAG+AGG + chr7_1:76165098-76165117 Msa1039060:three_prime_UTR 55.0%
GAGGGAGGGGATTGAGAGGA+TGG - chr7_1:76158883-76158902 None:intergenic 60.0%
TGGAGAGGGAGGGGATTGAG+AGG - chr7_1:76158887-76158906 None:intergenic 60.0%
AGTGTGACGGCGGCCATACT+AGG - chr7_1:76159005-76159024 None:intergenic 60.0%
! GTATTGACCGGCGCGAAGAG+CGG - chr7_1:76159072-76159091 None:intergenic 60.0%
!! AGCAGAGACGAAAGCACCGG+CGG - chr7_1:76159120-76159139 None:intergenic 60.0%
! GGCGTCGGATCAACGGGAAA+AGG - chr7_1:76159176-76159195 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr7_1:76159584-76159603 Msa1039060:intron 60.0%
GACAGGAAGCTCCCATGCCT+TGG - chr7_1:76161085-76161104 None:intergenic 60.0%
ACGAAGGCCACAACCACCAC+AGG - chr7_1:76161363-76161382 None:intergenic 60.0%
CACGCTTCTCAAACTGCCGC+AGG + chr7_1:76161446-76161465 Msa1039060:CDS 60.0%
CATCCGGCAATGGCAATGGC+CGG + chr7_1:76161549-76161568 Msa1039060:CDS 60.0%
CATCCGGCCATTGCCATTGC+CGG - chr7_1:76161555-76161574 None:intergenic 60.0%
GCAATGGCCGGATGCTTTGC+TGG + chr7_1:76161561-76161580 Msa1039060:CDS 60.0%
CCCACCTGGGTTCCTAACAC+TGG - chr7_1:76164939-76164958 None:intergenic 60.0%
AGGAACCCAGGTGGGCCAAA+TGG + chr7_1:76164944-76164963 Msa1039060:three_prime_UTR 60.0%
GGGGTTGTCCAAGTGGCTGA+TGG + chr7_1:76165041-76165060 Msa1039060:three_prime_UTR 60.0%
! CGCGCCGGTCAATACCGTAC+CGG + chr7_1:76159077-76159096 Msa1039060:CDS 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr7_1:76159592-76159611 None:intergenic 65.0%
GGTCCCGATTCCGAGTGCCT+AGG + chr7_1:76161742-76161761 Msa1039060:CDS 65.0%
TCTCTCGCCGCTCTTCGCGC+CGG + chr7_1:76159062-76159081 Msa1039060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76158681 76165187 76158681 ID=Msa1039060;Name=Msa1039060
chr7_1 mRNA 76158681 76165187 76158681 ID=Msa1039060-mRNA-1;Parent=Msa1039060;Name=Msa1039060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.6|0.66|0.83|0.6|0.5|6|1551|540
chr7_1 exon 76158681 76159467 76158681 ID=Msa1039060-mRNA-1:exon:19657;Parent=Msa1039060-mRNA-1
chr7_1 exon 76160762 76160832 76160762 ID=Msa1039060-mRNA-1:exon:19658;Parent=Msa1039060-mRNA-1
chr7_1 exon 76161078 76162291 76161078 ID=Msa1039060-mRNA-1:exon:19659;Parent=Msa1039060-mRNA-1
chr7_1 exon 76162378 76162477 76162378 ID=Msa1039060-mRNA-1:exon:19660;Parent=Msa1039060-mRNA-1
chr7_1 exon 76163848 76163972 76163848 ID=Msa1039060-mRNA-1:exon:19661;Parent=Msa1039060-mRNA-1
chr7_1 exon 76164311 76165187 76164311 ID=Msa1039060-mRNA-1:exon:19662;Parent=Msa1039060-mRNA-1
chr7_1 CDS 76158681 76159467 76158681 ID=Msa1039060-mRNA-1:cds;Parent=Msa1039060-mRNA-1
chr7_1 CDS 76160762 76160832 76160762 ID=Msa1039060-mRNA-1:cds;Parent=Msa1039060-mRNA-1
chr7_1 CDS 76161078 76161842 76161078 ID=Msa1039060-mRNA-1:cds;Parent=Msa1039060-mRNA-1
chr7_1 three_prime_UTR 76161843 76162291 76161843 ID=Msa1039060-mRNA-1:three_prime_utr;Parent=Msa1039060-mRNA-1
chr7_1 three_prime_UTR 76162378 76162477 76162378 ID=Msa1039060-mRNA-1:three_prime_utr;Parent=Msa1039060-mRNA-1
chr7_1 three_prime_UTR 76163848 76163972 76163848 ID=Msa1039060-mRNA-1:three_prime_utr;Parent=Msa1039060-mRNA-1
chr7_1 three_prime_UTR 76164311 76165187 76164311 ID=Msa1039060-mRNA-1:three_prime_utr;Parent=Msa1039060-mRNA-1
Gene Sequence

>Msa1039060

ATGGCTTTGAAAACCATTTCACTCTCACTAATCCTCACTCTCATTATCATCTTCTTCATCACAATTCCTCCCTCTCCATCTCTCTTAATCACAACAACTTCTCCTCTTCGTAGATCACTCCTCAACAACATCGCCCCATCTTGCCCCATTCAATCCAATGGCGGCATCCTCAACTACCACTGCATTTTCCCTCAAACTCCCATCCTCTCAATCCCCTCCCTCTCCATTCTCCTCATCCTCCATTTCTACATCCTCATCAAAACCGCTTCTCACCATTTCTCAATCGTCACAACTAAACTCGCTTCTCACCTCAATCTCTCTCCTAGTATGGCCGCCGTCACACTTCTTGCTCTCGGTAACGGCTCTCCCGACGTCTTCTCATCTCTCGCCGCTCTTCGCGCCGGTCAATACCGTACCGGCTTCGGTGCTATACTCTCCGCCGGTGCTTTCGTCTCTGCTCTTGTTGTCGGCTTTGTCGCGATCTACACAGCTCCTTTTCCCGTTGATCCGACGCCGTTTGTTAGAGATGTGTTGTTCTACTTAACTGCTGCTATGTTTCTGTTTTATGTTTATCTTAGTGCTGAGATTTTTCTATGGCAAGCCGTTGGATTCGTTGCGTTCTATCTTTTCTTTGTTGGTTTTGTGTTTTACATGGATTTGGGAATGGCCAATCGGAGGGAAAAGAGTTCTGCGGATCTTGAGGGACAAATTGATTCCTTTTACGACCAAAAAGCGTCGGGATCTGTAGAAAAAGATAAACACACTTCTGGATTTCGTGGATCTTTTGACATGTTAAACCAAATTACGTTGACCACTGACCTAGTTGATGCTACTATGATCATCCCATTTGATATGATAATTTCCAAGGCATGGGAGCTTCCTGTCTCAACCCTCTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAACAGATTTTATGCATCGGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCATGTAACTCATTCGTGCCACTTAATCATCCCATAGTTTTCCTCCTCCCTAATACTCTTTTCCCTCTGTGGTCCGTAGTGTTCATGACAAGCTTCTCTCTTGCATTTCTCCATTTTGTATTGGAAAAAGAACCCCCAAAAGCAGAGCATTTGCCTGTGGTGGTTGTGGCCTTCGTTATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTCGTGAATTGCCTTGAAGCTTTAGGCACGCTTCTCAAACTGCCGCAGGCATTCCTAGGTCTTACCGTGCTAGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCGGCAATGGCAATGGCCGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACAAATATATATCCTAAAGCCTATGAACTTAATTTCCACGTTGGTATAGTGATTGCATTTGTGTTCCTGCTTTTAAGCCTCATGGGGTCTCTCTTAGTAATCACTTGGTCCCGATTCCGAGTGCCTAGGTTTTGGGGATTCTGTCTCGTAGGCCTCTATATTGTTTTTATGGCAGCGAGTTCAGCAGTAGCCATCTTTTCAAGTTGA
Protein sequence

>Msa1039060

MALKTISLSLILTLIIIFFITIPPSPSLLITTTSPLRRSLLNNIAPSCPIQSNGGILNYHCIFPQTPILSIPSLSILLILHFYILIKTASHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYTAPFPVDPTPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGMANRREKSSADLEGQIDSFYDQKASGSVEKDKHTSGFRGSFDMLNQITLTTDLVDATMIIPFDMIISKAWELPVSTLLRLTIPQPAPSQWNRFYASANIALCPLALLYACNSFVPLNHPIVFLLPNTLFPLWSVVFMTSFSLAFLHFVLEKEPPKAEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLPQAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIVFMAASSAVAIFSS*