AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185340 MtrunA17_Chr7g0273001 94.208 518 14 1 1 502 1 518 0.0 957
Msa0185340 MtrunA17_Chr6g0460831 30.285 492 292 8 55 499 95 582 2.13e-49 178
Msa0185340 MtrunA17_Chr6g0460821 30.675 489 271 12 37 468 60 537 3.84e-42 158
Msa0185340 MtrunA17_Chr7g0254091 30.750 400 230 9 59 441 95 464 1.55e-31 127
Msa0185340 MtrunA17_Chr8g0344371 32.171 258 161 4 242 492 388 638 1.40e-29 122
Msa0185340 MtrunA17_Chr8g0344371 31.818 176 110 4 43 211 115 287 3.66e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185340 AT1G08960.1 67.041 534 138 6 7 502 13 546 0.0 642
Msa0185340 AT5G17860.1 31.789 475 275 10 59 492 90 556 3.41e-57 199
Msa0185340 AT5G17860.2 32.207 444 279 10 59 492 90 521 2.09e-52 186
Msa0185340 AT5G17850.1 29.167 552 313 17 5 495 14 548 9.66e-44 162
Msa0185340 AT5G17850.2 29.167 552 313 17 5 495 14 548 9.66e-44 162
Msa0185340 AT3G14070.1 27.500 520 297 12 49 491 112 628 1.80e-42 160
Msa0185340 AT1G54115.1 32.000 250 155 4 248 491 389 629 5.18e-29 121
Msa0185340 AT1G54115.1 34.091 176 109 3 47 215 109 284 1.97e-19 92.0

Find 221 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGATTGGGTTTCAAATT+AGG 0.134965 1_4:+75479899 None:intergenic
GAGAAGTTGTTGTGATTAAG+AGG 0.182955 1_4:+75483175 None:intergenic
CGTATTGAGATTATGTTATA+TGG 0.201229 1_4:-75476900 Msa0185340:three_prime_UTR
ACAGGCAAATGCTCTGCTTT+TGG 0.211093 1_4:+75480635 None:intergenic
GGGATTATTTCCTCACTTCT+TGG 0.228457 1_4:-75477261 Msa0185340:three_prime_UTR
CACAGAGGGAAAAGAGTATT+AGG 0.243083 1_4:+75480722 None:intergenic
GATTCCGAGTGCCTAGGTTT+TGG 0.249551 1_4:-75480229 Msa0185340:CDS
TTAGGGGATAGGGGTTAGTT+AGG 0.255630 1_4:+75479917 None:intergenic
AGAGATTGGGTTTCAAATTA+GGG 0.264021 1_4:+75479900 None:intergenic
GCAATGAGTTGGATTTATTA+AGG 0.281711 1_4:+75479858 None:intergenic
AAATTAAGTTCATAGGCTTT+AGG 0.315192 1_4:+75480329 None:intergenic
ATTAGGGAGGAGGAAAACTA+TGG 0.320350 1_4:+75480739 None:intergenic
TTCGTCTCTGCTCTTGTTGT+CGG 0.331098 1_4:-75482808 Msa0185340:CDS
GATGAGGAGAATGGAGAGGG+AGG 0.338258 1_4:+75483041 None:intergenic
GAGGGAGGGGATTGAGAGGA+TGG 0.342271 1_4:+75483056 None:intergenic
CCGGAAGCACCTGTTCTTGT+TGG 0.345802 1_4:-75477465 Msa0185340:three_prime_UTR
GTGAATTGCCTTGAAGCTTT+AGG 0.347493 1_4:-75480554 Msa0185340:CDS
CCTTCGTTATGAGTGTGTTT+TGG 0.348369 1_4:-75480601 Msa0185340:CDS
CAACGAGATATCAAAGAGAT+TGG 0.350248 1_4:+75479886 None:intergenic
AACACCAAACTGAAATTTGT+TGG 0.351083 1_4:+75479559 None:intergenic
GGATTATTTCCTCACTTCTT+GGG 0.352175 1_4:-75477260 Msa0185340:three_prime_UTR
CATCCGGCCATTGCCATTGC+CGG 0.357339 1_4:+75480425 None:intergenic
GCAATGGCCGGATGCTTTGC+TGG 0.358095 1_4:-75480416 Msa0185340:CDS
AACAATCCATTTGGCCCACC+TGG 0.365523 1_4:+75477030 None:intergenic
TGTTGGTCTTGGAACTGCTT+TGG 0.368704 1_4:-75480375 Msa0185340:CDS
CCAACAAGAACAGGTGCTTC+CGG 0.371746 1_4:+75477465 None:intergenic
TACTTTGACTGCACAAAACT+TGG 0.387919 1_4:-75477148 Msa0185340:three_prime_UTR
CCTCAATCTCTCTCCTAGTA+TGG 0.388430 1_4:-75482947 Msa0185340:CDS
CGACATTAGCTAAGAGCATT+TGG 0.389034 1_4:-75477383 Msa0185340:three_prime_UTR
CTTCATAGAAAGATTTAGAT+AGG 0.389924 1_4:-75480125 Msa0185340:three_prime_UTR
GGTCAATACCGTACCGGCTT+CGG 0.391101 1_4:-75482853 Msa0185340:CDS
TTCTATATTGTTGCATTGCA+TGG 0.391207 1_4:-75477113 Msa0185340:three_prime_UTR
AAACTATTTAAGAAGAAAAC+TGG 0.396532 1_4:-75480035 Msa0185340:three_prime_UTR
TTTAACATGCTTGTTGGTCT+TGG 0.397900 1_4:-75480386 Msa0185340:CDS
CTCTCAAGCTTAGTGCTAGA+AGG 0.399250 1_4:-75476994 Msa0185340:three_prime_UTR
TATTCCAACAAATTTCAGTT+TGG 0.399670 1_4:-75479563 Msa0185340:three_prime_UTR
TGAGGAGAATGGAGAGGGAG+GGG 0.401522 1_4:+75483043 None:intergenic
CAACAAGAACAGGTGCTTCC+GGG 0.405795 1_4:+75477466 None:intergenic
AAAACCTAGGCACTCGGAAT+CGG 0.406998 1_4:+75480231 None:intergenic
GAGGATTAGTGAGAGTGAAA+TGG 0.411408 1_4:+75483242 None:intergenic
TAGTGGACAAAGAGCGATAT+TGG 0.413049 1_4:+75480805 None:intergenic
ATTGAGAGGATGGGAGTTTG+AGG 0.414253 1_4:+75483066 None:intergenic
AGCTTGTTCTGTTGCCCGAC+AGG 0.414924 1_4:+75478053 None:intergenic
GGGTTTCAAATTAGGGGATA+GGG 0.416477 1_4:+75479907 None:intergenic
AAATGACCTTCAAAACTTCA+TGG 0.416645 1_4:+75479529 None:intergenic
GAGGGATTGTCAATCTTAAG+AGG 0.419753 1_4:+75480867 None:intergenic
CATTGCGATGGTGCTGGTTG+AGG 0.420449 1_4:+75480848 None:intergenic
TGTACTTGCAACAAATTTCC+AGG 0.422420 1_4:+75477490 None:intergenic
TGGATTGAATGGGGCAAGAT+GGG 0.423000 1_4:+75483121 None:intergenic
ACAAACGGCGCCGGATCAAC+GGG 0.425874 1_4:+75482757 None:intergenic
GTTACCTAGGAAAATCGTTA+TGG 0.427493 1_4:+75477597 None:intergenic
TAGGGGATAGGGGTTAGTTA+GGG 0.431453 1_4:+75479918 None:intergenic
CGGAATTACAAAAGCTGAAG+TGG 0.438591 1_4:-75477284 Msa0185340:three_prime_UTR
GCTAGAAGGTTAATACTAGA+AGG 0.445809 1_4:-75476980 Msa0185340:three_prime_UTR
TGGGTTTCAAATTAGGGGAT+AGG 0.449743 1_4:+75479906 None:intergenic
TGGAGAGGGAGGGGATTGAG+AGG 0.453858 1_4:+75483052 None:intergenic
GCATTTGCCTGTGGTGGTTG+TGG 0.453910 1_4:-75480624 Msa0185340:CDS
GATGCCGCCATTGGATTGAA+TGG 0.456465 1_4:+75483110 None:intergenic
AACGAGATATCAAAGAGATT+GGG 0.460124 1_4:+75479887 None:intergenic
GGATGTAGAAATGGAGGATG+AGG 0.460612 1_4:+75483025 None:intergenic
AAACCTAGGCACTCGGAATC+GGG 0.460770 1_4:+75480232 None:intergenic
CTTTCTCTCCATCAGCCACT+TGG 0.461429 1_4:+75476931 None:intergenic
TTGGATTGAATGGGGCAAGA+TGG 0.462224 1_4:+75483120 None:intergenic
GGAATAAGAAAGAACTGAGT+GGG 0.463568 1_4:-75476959 Msa0185340:three_prime_UTR
AGAAACCAGGTATCAAGAAC+TGG 0.465897 1_4:+75479988 None:intergenic
ATGCCGCCATTGGATTGAAT+GGG 0.469388 1_4:+75483111 None:intergenic
AAACAATCAACTTGAAAAGA+TGG 0.469803 1_4:+75480151 None:intergenic
CCAATGTTTAACATGCTTGT+TGG 0.469958 1_4:-75480392 Msa0185340:CDS
TTGAGAGGATGGGAGTTTGA+GGG 0.470188 1_4:+75483067 None:intergenic
TCAATTCAAGAAGGCCTGTC+GGG 0.472852 1_4:-75478067 Msa0185340:three_prime_UTR
ACGAAGGCCACAACCACCAC+AGG 0.474486 1_4:+75480617 None:intergenic
ATTGCGATGGTGCTGGTTGA+GGG 0.474576 1_4:+75480849 None:intergenic
GAAGCGTGCCTAAAGCTTCA+AGG 0.475284 1_4:+75480546 None:intergenic
TAGGTCTTACCGTGCTAGCA+TGG 0.482485 1_4:-75480502 Msa0185340:CDS
TGGAAACAACCAACAAGAAC+AGG 0.482886 1_4:+75477456 None:intergenic
CCACTAGTCAAATGATGTAA+TGG 0.483396 1_4:-75477436 Msa0185340:three_prime_UTR
GTTGTTGTGATTAAGAGGGA+TGG 0.483470 1_4:+75483180 None:intergenic
GACAGGAAGCTCCCATGCCT+TGG 0.483478 1_4:+75480895 None:intergenic
AAACTGCCGCAGGCATTCCT+AGG 0.484727 1_4:-75480521 Msa0185340:CDS
AGCTTTCTTCTCTTGAAGCT+CGG 0.488783 1_4:-75479601 Msa0185340:three_prime_UTR
GGCGCCGGATCAACGGGAAA+AGG 0.489382 1_4:+75482763 None:intergenic
CCATTACATCATTTGACTAG+TGG 0.490989 1_4:+75477436 None:intergenic
AATTGGTTTATAAAATTGCC+CGG 0.491181 1_4:+75477075 None:intergenic
AACGTGGAAATTAAGTTCAT+AGG 0.491726 1_4:+75480322 None:intergenic
GCGAGAGATGAGAAGACGTC+GGG 0.494583 1_4:+75482889 None:intergenic
AGGAACCCAGGTGGGCCAAA+TGG 0.494754 1_4:-75477036 Msa0185340:three_prime_UTR
CACGCTTCTCAAACTGCCGC+AGG 0.495555 1_4:-75480531 Msa0185340:CDS
GAAATGGAGGATGAGGAGAA+TGG 0.496656 1_4:+75483032 None:intergenic
GAGGATGAGGAGAATGGAGA+GGG 0.497270 1_4:+75483038 None:intergenic
ACAGAGGGAAAAGAGTATTA+GGG 0.497292 1_4:+75480723 None:intergenic
AAAATCCAGTTCTTGATACC+TGG 0.497752 1_4:-75479993 Msa0185340:three_prime_UTR
TCTTTCTCTATTGAAGATTG+AGG 0.498027 1_4:-75479707 Msa0185340:intron
TAGTTGTGACGATTGAGAAA+TGG 0.500180 1_4:+75482983 None:intergenic
GGAAAAGAGTATTAGGGAGG+AGG 0.503216 1_4:+75480729 None:intergenic
GTGAGAGACGAGGAGAAACC+AGG 0.503320 1_4:+75479975 None:intergenic
CTTACTACCAGAGCATCAAA+TGG 0.503841 1_4:-75478112 Msa0185340:three_prime_UTR
AGAAGTTGTTGTGATTAAGA+GGG 0.504857 1_4:+75483176 None:intergenic
GCTTACAGATTTCCAAGGCA+TGG 0.505102 1_4:-75480907 Msa0185340:intron
AACAAACGGCGCCGGATCAA+CGG 0.505525 1_4:+75482756 None:intergenic
GTAGTTGAGGATGCCGCCAT+TGG 0.505638 1_4:+75483101 None:intergenic
AGTTGCTAAAGCTGGTCATC+CGG 0.505727 1_4:-75480444 Msa0185340:CDS
GCCGTCACACTTCTCGCTCT+CGG 0.506649 1_4:-75482922 Msa0185340:CDS
TGCAATGCAACAATATAGAA+AGG 0.507983 1_4:+75477116 None:intergenic
AGGTGGGCCAAATGGATTGT+TGG 0.510861 1_4:-75477028 Msa0185340:three_prime_UTR
GTGATTAAGAGGGATGGAGA+GGG 0.514627 1_4:+75483186 None:intergenic
TGGTCATCCGGCAATGGCAA+TGG 0.515868 1_4:-75480432 Msa0185340:CDS
CTGTTCCATTGCGATGGTGC+TGG 0.516010 1_4:+75480842 None:intergenic
CCATACTAGGAGAGAGATTG+AGG 0.516197 1_4:+75482947 None:intergenic
AAGAGTTCTGCGGATCTTGA+GGG 0.516492 1_4:-75482574 Msa0185340:CDS
AAAGAGTTCTGCGGATCTTG+AGG 0.517795 1_4:-75482575 Msa0185340:CDS
ATTAAGAGGGATGGAGAGGG+AGG 0.519227 1_4:+75483189 None:intergenic
AGTGTGACGGCGGCCATACT+AGG 0.520260 1_4:+75482934 None:intergenic
GTATTGAGATTATGTTATAT+GGG 0.521674 1_4:-75476899 Msa0185340:three_prime_UTR
ATGAGGAGAATGGAGAGGGA+GGG 0.521792 1_4:+75483042 None:intergenic
AAAACTATGGGATGATTAAG+TGG 0.522490 1_4:+75480752 None:intergenic
AACAACACATCTCTAACAAA+CGG 0.524091 1_4:+75482742 None:intergenic
TTTGGGAATGGCCAATCGGA+GGG 0.524305 1_4:-75482599 Msa0185340:CDS
CATTGGTCCAGCAAAGCATC+CGG 0.524643 1_4:+75480409 None:intergenic
GGTTTCAAATTAGGGGATAG+GGG 0.533769 1_4:+75479908 None:intergenic
AGCAGAGACGAAAGCACCGG+CGG 0.534152 1_4:+75482819 None:intergenic
GAGAGGAGAGAGTATTATCA+AGG 0.536518 1_4:-75476865 Msa0185340:three_prime_UTR
CATCCGGCAATGGCAATGGC+CGG 0.540312 1_4:-75480428 Msa0185340:CDS
CTTACAGATTTCCAAGGCAT+GGG 0.541325 1_4:-75480906 Msa0185340:intron
TCAATGACGAAGAGCAGTGC+AGG 0.542295 1_4:-75478026 Msa0185340:intron
ACCCCATGAGGCTTAAAAGC+AGG 0.545048 1_4:+75480276 None:intergenic
AGGTCTTACCGTGCTAGCAT+GGG 0.548021 1_4:-75480501 Msa0185340:CDS
GGGAGTCACGAGCAATGAGT+TGG 0.549283 1_4:+75479847 None:intergenic
AGGGAGGGGATTGAGAGGAT+GGG 0.549440 1_4:+75483057 None:intergenic
AGGACCAGTGTTAGGAACCC+AGG 0.550048 1_4:-75477048 Msa0185340:three_prime_UTR
GTTTATGCGTATTTGACACC+TGG 0.550987 1_4:-75477508 Msa0185340:three_prime_UTR
CGCGCCGGTCAATACCGTAC+CGG 0.551721 1_4:-75482859 Msa0185340:CDS
GGTCCCGATTCCGAGTGCCT+AGG 0.552227 1_4:-75480235 Msa0185340:CDS
TGAGTTGAGTGTGAGAGACG+AGG 0.553112 1_4:+75479965 None:intergenic
TTTCTTGTCTACAGTTACCT+AGG 0.553185 1_4:+75477584 None:intergenic
AATCTTAAGAGGGTTGAGAC+AGG 0.554164 1_4:+75480878 None:intergenic
CCCACCTGGGTTCCTAACAC+TGG 0.554568 1_4:+75477044 None:intergenic
GGGGTTGTCCAAGTGGCTGA+TGG 0.555275 1_4:-75476939 Msa0185340:three_prime_UTR
TAACTGTAGACAAGAAATGT+TGG 0.558214 1_4:-75477578 Msa0185340:three_prime_UTR
TTCGGCGCTATACTCTCCGC+CGG 0.558460 1_4:-75482835 Msa0185340:CDS
TCTCTCGCCGCTCTTCGCGC+CGG 0.558505 1_4:-75482874 Msa0185340:CDS
GTCAAATACGCATAAACTTG+TGG 0.560739 1_4:+75477514 None:intergenic
TTCAATTCAAGAAGGCCTGT+CGG 0.561563 1_4:-75478068 Msa0185340:three_prime_UTR
GAGATTGGGTTTCAAATTAG+GGG 0.562024 1_4:+75479901 None:intergenic
CATGCATACAAGAGGGCTAG+TGG 0.564229 1_4:+75480788 None:intergenic
AGAAGATGATAATGAGAGTG+AGG 0.566303 1_4:+75483223 None:intergenic
ACACTTCTCGCTCTCGGTAA+CGG 0.567195 1_4:-75482916 Msa0185340:CDS
AGGAATAAGAAAGAACTGAG+TGG 0.567355 1_4:-75476960 Msa0185340:three_prime_UTR
TGAGGAATAGCAATGGAAAG+TGG 0.567770 1_4:-75477539 Msa0185340:three_prime_UTR
TGGATTTGGGAATGGCCAAT+CGG 0.570540 1_4:-75482603 Msa0185340:CDS
TGTGATTAAGAGGGATGGAG+AGG 0.573624 1_4:+75483185 None:intergenic
TCTTGCCCCATTCAATCCAA+TGG 0.576988 1_4:-75483117 Msa0185340:CDS
TGATGAGGATGTAGAAATGG+AGG 0.577881 1_4:+75483019 None:intergenic
GATGTTGCAGTTGCTAAAGC+TGG 0.582356 1_4:-75480452 Msa0185340:CDS
GGAGAGTATAGCGCCGAAGC+CGG 0.582657 1_4:+75482840 None:intergenic
ATCCCCAAAACCTAGGCACT+CGG 0.583255 1_4:+75480225 None:intergenic
CTCAACCAGCACCATCGCAA+TGG 0.584181 1_4:-75480847 Msa0185340:CDS
AGGGATTGTCAATCTTAAGA+GGG 0.584931 1_4:+75480868 None:intergenic
GGTCTCTCTTAGTAATCACT+TGG 0.585616 1_4:-75480256 Msa0185340:CDS
GGATTGAATGGGGCAAGATG+GGG 0.586530 1_4:+75483122 None:intergenic
GGAGGATGAGGAGAATGGAG+AGG 0.588369 1_4:+75483037 None:intergenic
TGAATTTCCCCATGCTAGCA+CGG 0.589057 1_4:+75480493 None:intergenic
ACAATCCATTTGGCCCACCT+GGG 0.590622 1_4:+75477031 None:intergenic
GCTAGCATGGGGAAATTCAG+TGG 0.592549 1_4:-75480489 Msa0185340:CDS
GAAGCCGGTACGGTATTGAC+CGG 0.592685 1_4:+75482855 None:intergenic
ATTTGGGAATGGCCAATCGG+AGG 0.593231 1_4:-75482600 Msa0185340:CDS
TATGAACTTAATTTCCACGT+TGG 0.594331 1_4:-75480320 Msa0185340:CDS
GGAATTACAAAAGCTGAAGT+GGG 0.594798 1_4:-75477283 Msa0185340:three_prime_UTR
AATTTGTTGCAAGTACATCC+CGG 0.595795 1_4:-75477484 Msa0185340:three_prime_UTR
AAGATGGGGCGATGTTGTTG+AGG 0.596259 1_4:+75483136 None:intergenic
CTAGCATGGGGAAATTCAGT+GGG 0.597425 1_4:-75480488 Msa0185340:CDS
TAAAGCTGGTCATCCGGCAA+TGG 0.598791 1_4:-75480438 Msa0185340:CDS
TTAGGGAGGAGGAAAACTAT+GGG 0.599981 1_4:+75480740 None:intergenic
AGCAGAGCATTTGCCTGTGG+TGG 0.606627 1_4:-75480630 Msa0185340:CDS
GTATAGCGCCGAAGCCGGTA+CGG 0.607381 1_4:+75482845 None:intergenic
TGAACACTACGGACCACAGA+GGG 0.608035 1_4:+75480708 None:intergenic
GTATTGACCGGCGCGAAGAG+CGG 0.613005 1_4:+75482867 None:intergenic
ATGAGTTACATGCATACAAG+AGG 0.615518 1_4:+75480780 None:intergenic
ATGCTAGCACGGTAAGACCT+AGG 0.615531 1_4:+75480504 None:intergenic
CCAACAAGCATGTTAAACAT+TGG 0.616677 1_4:+75480392 None:intergenic
AGACAGAATCCCCAAAACCT+AGG 0.616693 1_4:+75480218 None:intergenic
AAGAGCAGAGACGAAAGCAC+CGG 0.618004 1_4:+75482816 None:intergenic
AAAAGCATGAGGAATAGCAA+TGG 0.621608 1_4:-75477546 Msa0185340:three_prime_UTR
TGCTCTTAGCTAATGTCGTG+TGG 0.623659 1_4:+75477388 None:intergenic
GATTGAGAAATGGTGAGAAG+CGG 0.626670 1_4:+75482993 None:intergenic
ACCGAGAGCGAGAAGTGTGA+CGG 0.626907 1_4:+75482921 None:intergenic
ACATCTCTAACAAACGGCGC+CGG 0.629400 1_4:+75482748 None:intergenic
GGCGAGAGATGAGAAGACGT+CGG 0.634201 1_4:+75482888 None:intergenic
ATTCACGAGCTCTCCAGCTG+TGG 0.642513 1_4:+75480571 None:intergenic
GGAAAATGCAGTGGTAGTTG+AGG 0.644910 1_4:+75483088 None:intergenic
ATAATTGCTCCCAAGAAGTG+AGG 0.648626 1_4:+75477251 None:intergenic
TAAAATCTGTTCCATTGCGA+TGG 0.654446 1_4:+75480836 None:intergenic
TGCCCCATTCAATCCAATGG+CGG 0.655644 1_4:-75483114 Msa0185340:CDS
GAATAAGAAAGAACTGAGTG+GGG 0.657253 1_4:-75476958 Msa0185340:three_prime_UTR
GGTCTTACCGTGCTAGCATG+GGG 0.659113 1_4:-75480500 Msa0185340:CDS
TGCCGCCATTGGATTGAATG+GGG 0.659131 1_4:+75483112 None:intergenic
GAATTACAAAAGCTGAAGTG+GGG 0.665958 1_4:-75477282 Msa0185340:three_prime_UTR
AATTACAAAAGCTGAAGTGG+GGG 0.666599 1_4:-75477281 Msa0185340:three_prime_UTR
TTGAGGAGTGATCTACGAAG+AGG 0.667500 1_4:+75483153 None:intergenic
TGAGTTACATGCATACAAGA+GGG 0.668778 1_4:+75480781 None:intergenic
ACTCTGCTTACAGATTTCCA+AGG 0.670878 1_4:-75480912 Msa0185340:intron
GAGGGAAAAGAGTATTAGGG+AGG 0.671135 1_4:+75480726 None:intergenic
AATACTTGTTATCTGTACCA+CGG 0.673474 1_4:+75477650 None:intergenic
ATGAACACTACGGACCACAG+AGG 0.674220 1_4:+75480707 None:intergenic
GAGTTTGAGGGAAAATGCAG+TGG 0.675343 1_4:+75483079 None:intergenic
CCAAAACACACTCATAACGA+AGG 0.680133 1_4:+75480601 None:intergenic
AAAAGCAGAGCATTTGCCTG+TGG 0.684107 1_4:-75480633 Msa0185340:CDS
CCAGTGTTAGGAACCCAGGT+GGG 0.686416 1_4:-75477044 Msa0185340:three_prime_UTR
ACTGAGTGGGGTTGTCCAAG+TGG 0.689096 1_4:-75476946 Msa0185340:three_prime_UTR
GCGCTCTTTGAATGGAACCG+TGG 0.689244 1_4:-75477667 Msa0185340:three_prime_UTR
GAAGCTTGTCATGAACACTA+CGG 0.689618 1_4:+75480697 None:intergenic
ATAGAACGCAACGAATCCAA+CGG 0.692109 1_4:+75482654 None:intergenic
TCGGAGGGAAAAGAGTTCTG+CGG 0.694446 1_4:-75482584 Msa0185340:CDS
GGAACTATGTGAAAAGCATG+AGG 0.695196 1_4:-75477557 Msa0185340:three_prime_UTR
ACCAGTGTTAGGAACCCAGG+TGG 0.705970 1_4:-75477045 Msa0185340:three_prime_UTR
TATGGGTGCTGACTGCTGAG+AGG 0.708788 1_4:-75476882 Msa0185340:three_prime_UTR
AGCATGGGGAAATTCAGTGG+GGG 0.714129 1_4:-75480486 Msa0185340:CDS
GTAAGACCTAGGAATGCCTG+CGG 0.717066 1_4:+75480515 None:intergenic
GAGAGCGAGAAGTGTGACGG+CGG 0.717520 1_4:+75482924 None:intergenic
TTACTAAGAGAGACCCCATG+AGG 0.728107 1_4:+75480264 None:intergenic
TAGCATGGGGAAATTCAGTG+GGG 0.756066 1_4:-75480487 Msa0185340:CDS
ATGCAATCACTATACCAACG+TGG 0.773379 1_4:+75480306 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATTTTAATCATTATT+AGG + chr1_4:75478204-75478223 None:intergenic 10.0%
!! ATAATTAAATAAAATATTCC+TGG - chr1_4:75479027-75479046 Msa0185340:intron 10.0%
!! TAATTAAATAAAATATTCCT+GGG - chr1_4:75479028-75479047 Msa0185340:intron 10.0%
!!! ATTTTATAAACCAATTTTTT+AGG - chr1_4:75483002-75483021 Msa0185340:CDS 10.0%
!!! GAATTTTCTTATATTATTGA+AGG + chr1_4:75478065-75478084 None:intergenic 15.0%
!! AATTCAATTCAAAAGATTAA+TGG - chr1_4:75478216-75478235 Msa0185340:intron 15.0%
!!! CTAGAATAATTATTTGTTTT+TGG - chr1_4:75480434-75480453 Msa0185340:CDS 15.0%
!!! AATAATTATTTGTTTTTGGT+TGG - chr1_4:75480438-75480457 Msa0185340:CDS 15.0%
!! TTACTAATGTAATCTTTAAT+TGG - chr1_4:75482089-75482108 Msa0185340:intron 15.0%
!! AATATGAAATACAATTGAAA+AGG + chr1_4:75482252-75482271 None:intergenic 15.0%
!! AACTATATAAATTTACATTC+TGG + chr1_4:75482358-75482377 None:intergenic 15.0%
!!! ATTCAAAAGATTAATGGTTT+TGG - chr1_4:75478222-75478241 Msa0185340:intron 20.0%
!!! TTTTTGATAATACAGTAATC+TGG - chr1_4:75478282-75478301 Msa0185340:intron 20.0%
!!! TTTTGATAATACAGTAATCT+GGG - chr1_4:75478283-75478302 Msa0185340:intron 20.0%
!! GAAGATAATTTGAATTTAGA+AGG - chr1_4:75478667-75478686 Msa0185340:intron 20.0%
!! TGAAAAGATTAACAAGTTAA+TGG + chr1_4:75478734-75478753 None:intergenic 20.0%
!!! TAATCTTTTCACACATAATA+TGG - chr1_4:75478743-75478762 Msa0185340:intron 20.0%
!!! AATCTTTTCACACATAATAT+GGG - chr1_4:75478744-75478763 Msa0185340:intron 20.0%
!! CAATTACTATCATATCAAAT+GGG + chr1_4:75478913-75478932 None:intergenic 20.0%
!! ACAATTACTATCATATCAAA+TGG + chr1_4:75478914-75478933 None:intergenic 20.0%
!!! ATTTTTAAAGTGCTACATTT+TGG + chr1_4:75480011-75480030 None:intergenic 20.0%
!!! GTTTTCTTCTTAAATAGTTT+GGG + chr1_4:75480035-75480054 None:intergenic 20.0%
!!! AGTTTTCTTCTTAAATAGTT+TGG + chr1_4:75480036-75480055 None:intergenic 20.0%
!! AAACTATTTAAGAAGAAAAC+TGG - chr1_4:75480035-75480054 Msa0185340:three_prime_UTR 20.0%
!! TTATGAAGTATGAATGATTA+TGG - chr1_4:75480621-75480640 Msa0185340:CDS 20.0%
!!! TTTTTCTACTAAATAACTAC+AGG + chr1_4:75481065-75481084 None:intergenic 20.0%
!! TGTAGTTATTTAGTAGAAAA+AGG - chr1_4:75481064-75481083 Msa0185340:intron 20.0%
!! TTGTTACATTATCTTACAAA+GGG - chr1_4:75481443-75481462 Msa0185340:intron 20.0%
!!! ATACCTGTTATTTATTATCT+AGG - chr1_4:75481848-75481867 Msa0185340:intron 20.0%
!! ATTCCTAGATAATAAATAAC+AGG + chr1_4:75481854-75481873 None:intergenic 20.0%
!! TTGAATTGATAAACAAGAAA+CGG + chr1_4:75481897-75481916 None:intergenic 20.0%
!!! ATCTTTAATTGGTTTTCTTT+TGG - chr1_4:75482100-75482119 Msa0185340:intron 20.0%
!! ATATAAATTTACATTCTGGA+TGG + chr1_4:75482354-75482373 None:intergenic 20.0%
!!! TAAAACTTTTTAGAAATGTG+TGG + chr1_4:75482847-75482866 None:intergenic 20.0%
!!! TTGATGGTATATATTTTGTT+TGG - chr1_4:75482894-75482913 Msa0185340:CDS 20.0%
!! GTATTGAGATTATGTTATAT+GGG - chr1_4:75483171-75483190 Msa0185340:CDS 20.0%
!! TTTTGTGTTTTACATGGATT+TGG - chr1_4:75477453-75477472 Msa0185340:three_prime_UTR 25.0%
!! TTTGTGTTTTACATGGATTT+GGG - chr1_4:75477454-75477473 Msa0185340:three_prime_UTR 25.0%
!! TTTATCTTTTTCTACAGATC+CGG + chr1_4:75477554-75477573 None:intergenic 25.0%
! GATATAATTCATTCATAGCT+TGG - chr1_4:75477837-75477856 Msa0185340:intron 25.0%
!! GAAAAATTAGTTTACACTGA+CGG - chr1_4:75477898-75477917 Msa0185340:intron 25.0%
!! ACCTGATTTTGAATAAAACA+GGG + chr1_4:75477942-75477961 None:intergenic 25.0%
!! AACCTGATTTTGAATAAAAC+AGG + chr1_4:75477943-75477962 None:intergenic 25.0%
!!! TACTTATTAGTTAACTTGCT+TGG - chr1_4:75477986-75478005 Msa0185340:intron 25.0%
!!! TTCTAAAATTGGTTACTCAT+AGG - chr1_4:75478012-75478031 Msa0185340:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr1_4:75478319-75478338 Msa0185340:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr1_4:75478461-75478480 Msa0185340:intron 25.0%
! GATCTATCAAAAACCATATT+TGG + chr1_4:75478501-75478520 None:intergenic 25.0%
! TACAACTCATCATACAAAAA+AGG + chr1_4:75478607-75478626 None:intergenic 25.0%
!! ATCTTTTCACACATAATATG+GGG - chr1_4:75478745-75478764 Msa0185340:intron 25.0%
!! GTTCTTTTTCCAATACAAAA+TGG + chr1_4:75479413-75479432 None:intergenic 25.0%
! AAATTAAGTTCATAGGCTTT+AGG + chr1_4:75479744-75479763 None:intergenic 25.0%
! AAACAATCAACTTGAAAAGA+TGG + chr1_4:75479922-75479941 None:intergenic 25.0%
! CTTCATAGAAAGATTTAGAT+AGG - chr1_4:75479945-75479964 Msa0185340:three_prime_UTR 25.0%
!!! CTACATTTTGGTTTTGAATA+TGG + chr1_4:75479999-75480018 None:intergenic 25.0%
!!! TGTATTTTAGAATGCACTAA+GGG + chr1_4:75480246-75480265 None:intergenic 25.0%
!!! TTCATTCATGCAATTTGTTT+TGG - chr1_4:75480405-75480424 Msa0185340:CDS 25.0%
! TATTCCAACAAATTTCAGTT+TGG - chr1_4:75480507-75480526 Msa0185340:CDS 25.0%
!!! TTGTGTTTTCATATTTGCTA+TGG - chr1_4:75480694-75480713 Msa0185340:CDS 25.0%
! ACAGTTGAAAATATTGAACA+AGG - chr1_4:75480899-75480918 Msa0185340:CDS 25.0%
! CAGTTGAAAATATTGAACAA+GGG - chr1_4:75480900-75480919 Msa0185340:CDS 25.0%
! TTTCATGTCTCTTAGAATTT+GGG - chr1_4:75481089-75481108 Msa0185340:intron 25.0%
!! TGATTATTTCTTGAGAAGAT+AGG - chr1_4:75481390-75481409 Msa0185340:intron 25.0%
! CTTTGTAAGATAATGTAACA+AGG + chr1_4:75481444-75481463 None:intergenic 25.0%
! CTTGTTACATTATCTTACAA+AGG - chr1_4:75481442-75481461 Msa0185340:intron 25.0%
! TGTTACATTATCTTACAAAG+GGG - chr1_4:75481444-75481463 Msa0185340:intron 25.0%
! GATAATAAATAACAGGTATG+TGG + chr1_4:75481847-75481866 None:intergenic 25.0%
! ATGGAAAAAAGAGATGAAAA+AGG - chr1_4:75481977-75481996 Msa0185340:intron 25.0%
!! AAAAGGTTTTCAATTCAAGA+AGG - chr1_4:75481994-75482013 Msa0185340:intron 25.0%
!! TTGGTTGACCTATTTTATTA+TGG - chr1_4:75482160-75482179 Msa0185340:intron 25.0%
! TTGTTGCTCCATAATAAAAT+AGG + chr1_4:75482171-75482190 None:intergenic 25.0%
!! TGTATTTTATTGTTCTGTGT+GGG - chr1_4:75482711-75482730 Msa0185340:CDS 25.0%
!!! ATTTCTTTGTCACTTTTACA+CGG - chr1_4:75482759-75482778 Msa0185340:CDS 25.0%
!! AATTGGTTTATAAAATTGCC+CGG + chr1_4:75482998-75483017 None:intergenic 25.0%
! CGTATTGAGATTATGTTATA+TGG - chr1_4:75483170-75483189 Msa0185340:CDS 25.0%
AGAAGTTGTTGTGATTAAGA+GGG + chr1_4:75476897-75476916 None:intergenic 30.0%
! TTTTGATGAGGATGTAGAAA+TGG + chr1_4:75477057-75477076 None:intergenic 30.0%
AACAACACATCTCTAACAAA+CGG + chr1_4:75477331-75477350 None:intergenic 30.0%
!! TTAGTGCTGAGATTTTTCTA+TGG - chr1_4:75477389-75477408 Msa0185340:three_prime_UTR 30.0%
!!! TGTTGGTTTTGTGTTTTACA+TGG - chr1_4:75477447-75477466 Msa0185340:three_prime_UTR 30.0%
!! ACTTTCAATTAGCTTTGTGA+TGG - chr1_4:75477618-75477637 Msa0185340:three_prime_UTR 30.0%
!!! AATTAGCTTTGTGATGGTTT+TGG - chr1_4:75477624-75477643 Msa0185340:three_prime_UTR 30.0%
GACAATGCATAAAATATGCA+AGG - chr1_4:75477699-75477718 Msa0185340:intron 30.0%
!!! ACGTATTTTTTCTTTGGTAG+TGG + chr1_4:75477744-75477763 None:intergenic 30.0%
!!! AAGCACACGTATTTTTTCTT+TGG + chr1_4:75477750-75477769 None:intergenic 30.0%
!! TCCCTGTTTTATTCAAAATC+AGG - chr1_4:75477938-75477957 Msa0185340:intron 30.0%
!! TTGCTTGGACTTTCTAAAAT+TGG - chr1_4:75478001-75478020 Msa0185340:intron 30.0%
CATTGTTTCAAGGTTACATA+TGG + chr1_4:75478151-75478170 None:intergenic 30.0%
CATATGTAACCTTGAAACAA+TGG - chr1_4:75478149-75478168 Msa0185340:intron 30.0%
CTCAGTTATAGTAGAAAAGT+TGG - chr1_4:75478308-75478327 Msa0185340:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr1_4:75478385-75478404 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr1_4:75478386-75478405 Msa0185340:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG + chr1_4:75478454-75478473 None:intergenic 30.0%
! CACCTCTAAATCTTTTCTAA+TGG + chr1_4:75478466-75478485 None:intergenic 30.0%
! GAATGAGTTGAATCCAAATA+TGG - chr1_4:75478485-75478504 Msa0185340:intron 30.0%
! TGGTTTTTGATAGATCACTA+TGG - chr1_4:75478505-75478524 Msa0185340:intron 30.0%
TGTATGATGAGTTGTAGTAA+TGG - chr1_4:75478611-75478630 Msa0185340:intron 30.0%
CACAATCGTTATTTATGTTG+TGG - chr1_4:75478698-75478717 Msa0185340:intron 30.0%
! TCTTTTCACACATAATATGG+GGG - chr1_4:75478746-75478765 Msa0185340:intron 30.0%
ATTTAATGTCTACCGACAAA+GGG + chr1_4:75478788-75478807 None:intergenic 30.0%
TAAAGTCTACTATCACTAAG+TGG + chr1_4:75478963-75478982 None:intergenic 30.0%
TTAGTGATAGTAGACTTTAG+TGG - chr1_4:75478964-75478983 Msa0185340:intron 30.0%
!!! CCTATCTAATTTTTTTACCC+AGG + chr1_4:75479048-75479067 None:intergenic 30.0%
CCTGGGTAAAAAAATTAGAT+AGG - chr1_4:75479045-75479064 Msa0185340:intron 30.0%
! ATGGAACAGATTTTATGCAT+CGG - chr1_4:75479242-75479261 Msa0185340:intron 30.0%
AAAACTATGGGATGATTAAG+TGG + chr1_4:75479321-75479340 None:intergenic 30.0%
! TGCATTTCTCCATTTTGTAT+TGG - chr1_4:75479401-75479420 Msa0185340:intron 30.0%
AACGTGGAAATTAAGTTCAT+AGG + chr1_4:75479751-75479770 None:intergenic 30.0%
TATGAACTTAATTTCCACGT+TGG - chr1_4:75479750-75479769 Msa0185340:three_prime_UTR 30.0%
!!! AGGCCTCTATATTGTTTTTA+TGG - chr1_4:75479878-75479897 Msa0185340:three_prime_UTR 30.0%
CTGCCATAAAAACAATATAG+AGG + chr1_4:75479884-75479903 None:intergenic 30.0%
!! CAAAACTTGTGTTTTTGAAC+AGG + chr1_4:75479971-75479990 None:intergenic 30.0%
!!! ATTTTTTGCACAAAACGGAA+CGG + chr1_4:75480062-75480081 None:intergenic 30.0%
!!! ACTGGATTTTTTGCACAAAA+CGG + chr1_4:75480067-75480086 None:intergenic 30.0%
AGAGATTGGGTTTCAAATTA+GGG + chr1_4:75480173-75480192 None:intergenic 30.0%
AAGAGATTGGGTTTCAAATT+AGG + chr1_4:75480174-75480193 None:intergenic 30.0%
AACGAGATATCAAAGAGATT+GGG + chr1_4:75480186-75480205 None:intergenic 30.0%
! GCAATGAGTTGGATTTATTA+AGG + chr1_4:75480215-75480234 None:intergenic 30.0%
!!! GTGTATTTTAGAATGCACTA+AGG + chr1_4:75480247-75480266 None:intergenic 30.0%
TCTTTCTCTATTGAAGATTG+AGG - chr1_4:75480363-75480382 Msa0185340:CDS 30.0%
AACACCAAACTGAAATTTGT+TGG + chr1_4:75480514-75480533 None:intergenic 30.0%
AAATGACCTTCAAAACTTCA+TGG + chr1_4:75480544-75480563 None:intergenic 30.0%
TGCACAAGATAATTGGAATT+TGG + chr1_4:75480785-75480804 None:intergenic 30.0%
ACAAACTTGCACAAGATAAT+TGG + chr1_4:75480792-75480811 None:intergenic 30.0%
CTTTCATGTCTCTTAGAATT+TGG - chr1_4:75481088-75481107 Msa0185340:intron 30.0%
TTAACTCATCCTTACAAAAC+TGG - chr1_4:75481118-75481137 Msa0185340:intron 30.0%
!!! TTTTAAGCATTGGCTTTAAG+AGG + chr1_4:75481347-75481366 None:intergenic 30.0%
! CAGGTTTTCATTTTAAGCAT+TGG + chr1_4:75481357-75481376 None:intergenic 30.0%
!! GAAGATAGGACTTGTTAATT+TGG - chr1_4:75481404-75481423 Msa0185340:intron 30.0%
!! GACTTGTTAATTTGGAGATA+CGG - chr1_4:75481412-75481431 Msa0185340:intron 30.0%
TACAGAAGATGAAAGAACAA+AGG + chr1_4:75481498-75481517 None:intergenic 30.0%
GAAATATACAAGAACGCTTT+GGG + chr1_4:75481664-75481683 None:intergenic 30.0%
TGAAATATACAAGAACGCTT+TGG + chr1_4:75481665-75481684 None:intergenic 30.0%
AAACAGAATTGTTTCAGTGA+GGG - chr1_4:75481728-75481747 Msa0185340:intron 30.0%
AGGAAATCTATAAGTAGCAA+TGG - chr1_4:75481757-75481776 Msa0185340:intron 30.0%
!! AATACTTGTTATCTGTACCA+CGG + chr1_4:75482423-75482442 None:intergenic 30.0%
TAACTGTAGACAAGAAATGT+TGG - chr1_4:75482492-75482511 Msa0185340:intron 30.0%
! CTGTATTTTATTGTTCTGTG+TGG - chr1_4:75482710-75482729 Msa0185340:CDS 30.0%
! GAAGTGAACTTAACTTTTGA+TGG - chr1_4:75482878-75482897 Msa0185340:CDS 30.0%
TGCAATGCAACAATATAGAA+AGG + chr1_4:75482957-75482976 None:intergenic 30.0%
TTCTATATTGTTGCATTGCA+TGG - chr1_4:75482957-75482976 Msa0185340:CDS 30.0%
TAACACTGGTCCTAAAAAAT+TGG + chr1_4:75483015-75483034 None:intergenic 30.0%
!!! AATTTTTTAGGACCAGTGTT+AGG - chr1_4:75483014-75483033 Msa0185340:CDS 30.0%
! AGAAGATGATAATGAGAGTG+AGG + chr1_4:75476850-75476869 None:intergenic 35.0%
GAGAAGTTGTTGTGATTAAG+AGG + chr1_4:75476898-75476917 None:intergenic 35.0%
TAGTTGTGACGATTGAGAAA+TGG + chr1_4:75477090-75477109 None:intergenic 35.0%
! GCGTTCTATCTTTTCTTTGT+TGG - chr1_4:75477430-75477449 Msa0185340:three_prime_UTR 35.0%
! GTTTTACATGGATTTGGGAA+TGG - chr1_4:75477459-75477478 Msa0185340:three_prime_UTR 35.0%
GAAAAAGATAAACACGCTTC+TGG - chr1_4:75477562-75477581 Msa0185340:three_prime_UTR 35.0%
!! ATTTCGTGGATCTTTTGGTT+CGG - chr1_4:75477585-75477604 Msa0185340:three_prime_UTR 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr1_4:75477704-75477723 Msa0185340:intron 35.0%
!!! TTTTTTCTTTGGTAGTGGCT+GGG + chr1_4:75477739-75477758 None:intergenic 35.0%
!!! ATTTTTTCTTTGGTAGTGGC+TGG + chr1_4:75477740-75477759 None:intergenic 35.0%
!! AGGTTTGTTAAACACTTGCA+CGG - chr1_4:75477958-75477977 Msa0185340:intron 35.0%
ACATCAAATGAATAGCTCCA+AGG + chr1_4:75478175-75478194 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr1_4:75478328-75478347 Msa0185340:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_4:75478333-75478352 Msa0185340:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr1_4:75478389-75478408 Msa0185340:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG + chr1_4:75478444-75478463 None:intergenic 35.0%
GGTATATGTTTCTCAAGTTC+TGG - chr1_4:75478632-75478651 Msa0185340:intron 35.0%
GATTTAATGTCTACCGACAA+AGG + chr1_4:75478789-75478808 None:intergenic 35.0%
TGTCGGTAGACATTAAATCA+AGG - chr1_4:75478790-75478809 Msa0185340:intron 35.0%
TGATCATAGTAGCATCAACT+AGG + chr1_4:75478889-75478908 None:intergenic 35.0%
GAAATCTGTAAGCAGAGTAT+GGG + chr1_4:75479156-75479175 None:intergenic 35.0%
AGGGATTGTCAATCTTAAGA+GGG + chr1_4:75479205-75479224 None:intergenic 35.0%
TAAAATCTGTTCCATTGCGA+TGG + chr1_4:75479237-75479256 None:intergenic 35.0%
TGAGTTACATGCATACAAGA+GGG + chr1_4:75479292-75479311 None:intergenic 35.0%
ATGAGTTACATGCATACAAG+AGG + chr1_4:75479293-75479312 None:intergenic 35.0%
!! ACAGAGGGAAAAGAGTATTA+GGG + chr1_4:75479350-75479369 None:intergenic 35.0%
CCAACAAGCATGTTAAACAT+TGG + chr1_4:75479681-75479700 None:intergenic 35.0%
CCAATGTTTAACATGCTTGT+TGG - chr1_4:75479678-75479697 Msa0185340:intron 35.0%
! TTTAACATGCTTGTTGGTCT+TGG - chr1_4:75479684-75479703 Msa0185340:intron 35.0%
!!! TTTTTTGCACAAAACGGAAC+GGG + chr1_4:75480061-75480080 None:intergenic 35.0%
AAAATCCAGTTCTTGATACC+TGG - chr1_4:75480077-75480096 Msa0185340:three_prime_UTR 35.0%
GAGATTGGGTTTCAAATTAG+GGG + chr1_4:75480172-75480191 None:intergenic 35.0%
CAACGAGATATCAAAGAGAT+TGG + chr1_4:75480187-75480206 None:intergenic 35.0%
TTCAAGAGAAGAAAGCTTCA+AGG + chr1_4:75480466-75480485 None:intergenic 35.0%
ATGATTCTCTCTATGCTTTC+TGG - chr1_4:75480648-75480667 Msa0185340:CDS 35.0%
TGATTCTCTCTATGCTTTCT+GGG - chr1_4:75480649-75480668 Msa0185340:CDS 35.0%
! TGGGTTTTCTTGCACAAATT+TGG - chr1_4:75480668-75480687 Msa0185340:CDS 35.0%
!! TTTTGGTGGTATTAAGCTTG+TGG - chr1_4:75480727-75480746 Msa0185340:CDS 35.0%
!! AGTTTTATGCTGAATCTGCT+TGG - chr1_4:75480825-75480844 Msa0185340:CDS 35.0%
ATGTCTCTTAGAATTTGGGT+TGG - chr1_4:75481093-75481112 Msa0185340:intron 35.0%
!! CCTTAAATGCCAGTTTTGTA+AGG + chr1_4:75481130-75481149 None:intergenic 35.0%
CCTTACAAAACTGGCATTTA+AGG - chr1_4:75481127-75481146 Msa0185340:intron 35.0%
! AAAACTGGCATTTAAGGTGT+GGG - chr1_4:75481133-75481152 Msa0185340:intron 35.0%
TTTCATTGTGTAGGTGTGAA+GGG + chr1_4:75481222-75481241 None:intergenic 35.0%
! TTTAAGAGGAAGCGTGTTAA+TGG + chr1_4:75481333-75481352 None:intergenic 35.0%
TAATCATCATCTCACTCTTC+AGG + chr1_4:75481376-75481395 None:intergenic 35.0%
!!! AAGGGGCTATTTTGATAACA+TGG - chr1_4:75481461-75481480 Msa0185340:intron 35.0%
!!! AGGGGCTATTTTGATAACAT+GGG - chr1_4:75481462-75481481 Msa0185340:intron 35.0%
ATCACCGAAGAAAAATGAGA+AGG + chr1_4:75481555-75481574 None:intergenic 35.0%
GAAACAGAATTGTTTCAGTG+AGG - chr1_4:75481727-75481746 Msa0185340:intron 35.0%
TTGTGGCTGTAACAATAGTT+TGG - chr1_4:75481795-75481814 Msa0185340:intron 35.0%
TAAATAACAGGTATGTGGCA+AGG + chr1_4:75481842-75481861 None:intergenic 35.0%
ACAAGAAACGGCTAAATCAT+AGG + chr1_4:75481885-75481904 None:intergenic 35.0%
!!! CTTTTTTCCATTTGATGCTC+TGG + chr1_4:75481968-75481987 None:intergenic 35.0%
! CTTTCCATAACGATTTTCCT+AGG - chr1_4:75482469-75482488 Msa0185340:intron 35.0%
GTTACCTAGGAAAATCGTTA+TGG + chr1_4:75482476-75482495 None:intergenic 35.0%
TTTCTTGTCTACAGTTACCT+AGG + chr1_4:75482489-75482508 None:intergenic 35.0%
! AAAAGCATGAGGAATAGCAA+TGG - chr1_4:75482524-75482543 Msa0185340:intron 35.0%
GTCAAATACGCATAAACTTG+TGG + chr1_4:75482559-75482578 None:intergenic 35.0%
TGTACTTGCAACAAATTTCC+AGG + chr1_4:75482583-75482602 None:intergenic 35.0%
!! AATTTGTTGCAAGTACATCC+CGG - chr1_4:75482586-75482605 Msa0185340:CDS 35.0%
CCATTACATCATTTGACTAG+TGG + chr1_4:75482637-75482656 None:intergenic 35.0%
CCACTAGTCAAATGATGTAA+TGG - chr1_4:75482634-75482653 Msa0185340:CDS 35.0%
GGAATTACAAAAGCTGAAGT+GGG - chr1_4:75482787-75482806 Msa0185340:CDS 35.0%
GAATTACAAAAGCTGAAGTG+GGG - chr1_4:75482788-75482807 Msa0185340:CDS 35.0%
AATTACAAAAGCTGAAGTGG+GGG - chr1_4:75482789-75482808 Msa0185340:CDS 35.0%
GGATTATTTCCTCACTTCTT+GGG - chr1_4:75482810-75482829 Msa0185340:CDS 35.0%
TACTTTGACTGCACAAAACT+TGG - chr1_4:75482922-75482941 Msa0185340:CDS 35.0%
! ATGGTTAAGAAGCAGTTTTC+CGG - chr1_4:75482976-75482995 Msa0185340:CDS 35.0%
! TGTTTTGCCAACAATCCATT+TGG + chr1_4:75483052-75483071 None:intergenic 35.0%
GCTAGAAGGTTAATACTAGA+AGG - chr1_4:75483090-75483109 Msa0185340:CDS 35.0%
AGGAATAAGAAAGAACTGAG+TGG - chr1_4:75483110-75483129 Msa0185340:CDS 35.0%
GGAATAAGAAAGAACTGAGT+GGG - chr1_4:75483111-75483130 Msa0185340:CDS 35.0%
GAATAAGAAAGAACTGAGTG+GGG - chr1_4:75483112-75483131 Msa0185340:CDS 35.0%
! GAGGATTAGTGAGAGTGAAA+TGG + chr1_4:75476831-75476850 None:intergenic 40.0%
GTTGTTGTGATTAAGAGGGA+TGG + chr1_4:75476893-75476912 None:intergenic 40.0%
TGATGAGGATGTAGAAATGG+AGG + chr1_4:75477054-75477073 None:intergenic 40.0%
GATTGAGAAATGGTGAGAAG+CGG + chr1_4:75477080-75477099 None:intergenic 40.0%
! ATTTTTCTATGGCAAGCCGT+TGG - chr1_4:75477400-75477419 Msa0185340:three_prime_UTR 40.0%
ATAGAACGCAACGAATCCAA+CGG + chr1_4:75477419-75477438 None:intergenic 40.0%
!! TATTACGACGAAAAAGCGTC+CGG - chr1_4:75477532-75477551 Msa0185340:three_prime_UTR 40.0%
! TCTGGATTTCGTGGATCTTT+TGG - chr1_4:75477580-75477599 Msa0185340:three_prime_UTR 40.0%
! TGAAAGCACACGTATACGAA+AGG + chr1_4:75477650-75477669 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr1_4:75477705-75477724 Msa0185340:intron 40.0%
!!! TTTTTCTTTGGTAGTGGCTG+GGG + chr1_4:75477738-75477757 None:intergenic 40.0%
!! GGTTTGTTAAACACTTGCAC+GGG - chr1_4:75477959-75477978 Msa0185340:intron 40.0%
TAACCTTGAAACAATGGCCT+TGG - chr1_4:75478155-75478174 Msa0185340:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr1_4:75478376-75478395 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_4:75478414-75478433 Msa0185340:intron 40.0%
!! ATGTTTCTCAAGTTCTGGAC+AGG - chr1_4:75478637-75478656 Msa0185340:intron 40.0%
TTTCACACATAATATGGGGG+AGG - chr1_4:75478749-75478768 Msa0185340:intron 40.0%
GACATTAAATCAAGGACAGC+TGG - chr1_4:75478798-75478817 Msa0185340:intron 40.0%
GAAATGTTATGCATCGTGTG+TGG - chr1_4:75479067-75479086 Msa0185340:intron 40.0%
GGAAATCTGTAAGCAGAGTA+TGG + chr1_4:75479157-75479176 None:intergenic 40.0%
ACTCTGCTTACAGATTTCCA+AGG - chr1_4:75479158-75479177 Msa0185340:intron 40.0%
CTTACAGATTTCCAAGGCAT+GGG - chr1_4:75479164-75479183 Msa0185340:intron 40.0%
AATCTTAAGAGGGTTGAGAC+AGG + chr1_4:75479195-75479214 None:intergenic 40.0%
GAGGGATTGTCAATCTTAAG+AGG + chr1_4:75479206-75479225 None:intergenic 40.0%
! TAGTGGACAAAGAGCGATAT+TGG + chr1_4:75479268-75479287 None:intergenic 40.0%
TTAGGGAGGAGGAAAACTAT+GGG + chr1_4:75479333-75479352 None:intergenic 40.0%
ATTAGGGAGGAGGAAAACTA+TGG + chr1_4:75479334-75479353 None:intergenic 40.0%
!! CACAGAGGGAAAAGAGTATT+AGG + chr1_4:75479351-75479370 None:intergenic 40.0%
! CTAATACTCTTTTCCCTCTG+TGG - chr1_4:75479349-75479368 Msa0185340:intron 40.0%
GAAGCTTGTCATGAACACTA+CGG + chr1_4:75479376-75479395 None:intergenic 40.0%
CCAAAACACACTCATAACGA+AGG + chr1_4:75479472-75479491 None:intergenic 40.0%
! CCTTCGTTATGAGTGTGTTT+TGG - chr1_4:75479469-75479488 Msa0185340:intron 40.0%
! TTTTGGATATCTACCACAGC+TGG - chr1_4:75479486-75479505 Msa0185340:intron 40.0%
GTGAATTGCCTTGAAGCTTT+AGG - chr1_4:75479516-75479535 Msa0185340:intron 40.0%
ATGCAATCACTATACCAACG+TGG + chr1_4:75479767-75479786 None:intergenic 40.0%
!! TTCCTGCTTTTAAGCCTCAT+GGG - chr1_4:75479792-75479811 Msa0185340:three_prime_UTR 40.0%
GGTCTCTCTTAGTAATCACT+TGG - chr1_4:75479814-75479833 Msa0185340:three_prime_UTR 40.0%
AGAAACCAGGTATCAAGAAC+TGG + chr1_4:75480085-75480104 None:intergenic 40.0%
!! TAGTTAGGGTTTTTCAGCTG+TGG + chr1_4:75480141-75480160 None:intergenic 40.0%
GGTTTCAAATTAGGGGATAG+GGG + chr1_4:75480165-75480184 None:intergenic 40.0%
GGGTTTCAAATTAGGGGATA+GGG + chr1_4:75480166-75480185 None:intergenic 40.0%
TGGGTTTCAAATTAGGGGAT+AGG + chr1_4:75480167-75480186 None:intergenic 40.0%
AGCTTTCTTCTCTTGAAGCT+CGG - chr1_4:75480469-75480488 Msa0185340:CDS 40.0%
!! CACTCTCCATGAAGTTTTGA+AGG - chr1_4:75480535-75480554 Msa0185340:CDS 40.0%
!! TTTTGAAGGTCATTTCCTGC+AGG - chr1_4:75480549-75480568 Msa0185340:CDS 40.0%
!! GCTATGGTGCTAATGAGTTT+TGG - chr1_4:75480710-75480729 Msa0185340:CDS 40.0%
!! ATGGTGCTAATGAGTTTTGG+TGG - chr1_4:75480713-75480732 Msa0185340:CDS 40.0%
CAGAGTCATGCATATGCATA+TGG - chr1_4:75480853-75480872 Msa0185340:CDS 40.0%
AGTCATGCATATGCATATGG+TGG - chr1_4:75480856-75480875 Msa0185340:CDS 40.0%
GTCATGCATATGCATATGGT+GGG - chr1_4:75480857-75480876 Msa0185340:CDS 40.0%
ACATCAGGACATTGGCATTT+AGG - chr1_4:75480948-75480967 Msa0185340:intron 40.0%
GGACATTGGCATTTAGGAAA+TGG - chr1_4:75480954-75480973 Msa0185340:intron 40.0%
! CAAAACTGGCATTTAAGGTG+TGG - chr1_4:75481132-75481151 Msa0185340:intron 40.0%
ATTTAGTCCCACATTGCCTA+GGG + chr1_4:75481194-75481213 None:intergenic 40.0%
TTCATTGTGTAGGTGTGAAG+GGG + chr1_4:75481221-75481240 None:intergenic 40.0%
CTTTCATTGTGTAGGTGTGA+AGG + chr1_4:75481223-75481242 None:intergenic 40.0%
! CACCTACACAATGAAAGTGT+TGG - chr1_4:75481226-75481245 Msa0185340:intron 40.0%
CTCCAACACTTTCATTGTGT+AGG + chr1_4:75481231-75481250 None:intergenic 40.0%
!! CTACACAATGAAAGTGTTGG+AGG - chr1_4:75481229-75481248 Msa0185340:intron 40.0%
GCTGCATAATTACGGCATTT+GGG + chr1_4:75481270-75481289 None:intergenic 40.0%
AGCTGCATAATTACGGCATT+TGG + chr1_4:75481271-75481290 None:intergenic 40.0%
TGCCTCTAGCTGCATAATTA+CGG + chr1_4:75481278-75481297 None:intergenic 40.0%
! GCGTGTTAATGGACATTGTT+GGG + chr1_4:75481322-75481341 None:intergenic 40.0%
! AGCGTGTTAATGGACATTGT+TGG + chr1_4:75481323-75481342 None:intergenic 40.0%
!! GTCGCCTTCTCATTTTTCTT+CGG - chr1_4:75481548-75481567 Msa0185340:intron 40.0%
CTGTTCAGACAGAAGGTTAT+TGG - chr1_4:75481596-75481615 Msa0185340:intron 40.0%
!! CCATTTTTGACAAAGTGACC+CGG - chr1_4:75481685-75481704 Msa0185340:intron 40.0%
TATAACTCTTCCATGATGCC+GGG + chr1_4:75481706-75481725 None:intergenic 40.0%
CTATAACTCTTCCATGATGC+CGG + chr1_4:75481707-75481726 None:intergenic 40.0%
!! GTAGCAATGGCTTTAAGACA+CGG - chr1_4:75481770-75481789 Msa0185340:intron 40.0%
GATTGCAATACCTGTCACAT+TGG + chr1_4:75481932-75481951 None:intergenic 40.0%
! CTTACTACCAGAGCATCAAA+TGG - chr1_4:75481958-75481977 Msa0185340:intron 40.0%
TTCAATTCAAGAAGGCCTGT+CGG - chr1_4:75482002-75482021 Msa0185340:intron 40.0%
AAAATAGGTCAACCAACACC+AGG + chr1_4:75482156-75482175 None:intergenic 40.0%
!!! CTTTTTCAGCGCTCTTTGAA+TGG - chr1_4:75482395-75482414 Msa0185340:intron 40.0%
! GGAACTATGTGAAAAGCATG+AGG - chr1_4:75482513-75482532 Msa0185340:intron 40.0%
TGAGGAATAGCAATGGAAAG+TGG - chr1_4:75482531-75482550 Msa0185340:intron 40.0%
GTTTATGCGTATTTGACACC+TGG - chr1_4:75482562-75482581 Msa0185340:CDS 40.0%
TGGAAACAACCAACAAGAAC+AGG + chr1_4:75482617-75482636 None:intergenic 40.0%
!! CGACATTAGCTAAGAGCATT+TGG - chr1_4:75482687-75482706 Msa0185340:CDS 40.0%
!!! TCTTTGTCACTTTTACACGG+TGG - chr1_4:75482762-75482781 Msa0185340:CDS 40.0%
CGGAATTACAAAAGCTGAAG+TGG - chr1_4:75482786-75482805 Msa0185340:CDS 40.0%
GGGATTATTTCCTCACTTCT+TGG - chr1_4:75482809-75482828 Msa0185340:CDS 40.0%
ATAATTGCTCCCAAGAAGTG+AGG + chr1_4:75482822-75482841 None:intergenic 40.0%
! TGGTTAAGAAGCAGTTTTCC+GGG - chr1_4:75482977-75482996 Msa0185340:CDS 40.0%
!! GAGAGGAGAGAGTATTATCA+AGG - chr1_4:75483205-75483224 Msa0185340:CDS 40.0%
GTGATTAAGAGGGATGGAGA+GGG + chr1_4:75476887-75476906 None:intergenic 45.0%
TGTGATTAAGAGGGATGGAG+AGG + chr1_4:75476888-75476907 None:intergenic 45.0%
TTGAGGAGTGATCTACGAAG+AGG + chr1_4:75476920-75476939 None:intergenic 45.0%
TGGATTGAATGGGGCAAGAT+GGG + chr1_4:75476952-75476971 None:intergenic 45.0%
TTGGATTGAATGGGGCAAGA+TGG + chr1_4:75476953-75476972 None:intergenic 45.0%
TCTTGCCCCATTCAATCCAA+TGG - chr1_4:75476953-75476972 Msa0185340:three_prime_UTR 45.0%
ATGCCGCCATTGGATTGAAT+GGG + chr1_4:75476962-75476981 None:intergenic 45.0%
GGAAAATGCAGTGGTAGTTG+AGG + chr1_4:75476985-75477004 None:intergenic 45.0%
GAGTTTGAGGGAAAATGCAG+TGG + chr1_4:75476994-75477013 None:intergenic 45.0%
TTGAGAGGATGGGAGTTTGA+GGG + chr1_4:75477006-75477025 None:intergenic 45.0%
ATTGAGAGGATGGGAGTTTG+AGG + chr1_4:75477007-75477026 None:intergenic 45.0%
GAAATGGAGGATGAGGAGAA+TGG + chr1_4:75477041-75477060 None:intergenic 45.0%
GGATGTAGAAATGGAGGATG+AGG + chr1_4:75477048-75477067 None:intergenic 45.0%
CCATACTAGGAGAGAGATTG+AGG + chr1_4:75477126-75477145 None:intergenic 45.0%
CCTCAATCTCTCTCCTAGTA+TGG - chr1_4:75477123-75477142 Msa0185340:three_prime_UTR 45.0%
! TTCGTCTCTGCTCTTGTTGT+CGG - chr1_4:75477262-75477281 Msa0185340:three_prime_UTR 45.0%
TGGATTTGGGAATGGCCAAT+CGG - chr1_4:75477467-75477486 Msa0185340:three_prime_UTR 45.0%
! AGAACTCTTTTCCCTCCGAT+TGG + chr1_4:75477485-75477504 None:intergenic 45.0%
AAAGAGTTCTGCGGATCTTG+AGG - chr1_4:75477495-75477514 Msa0185340:three_prime_UTR 45.0%
AAGAGTTCTGCGGATCTTGA+GGG - chr1_4:75477496-75477515 Msa0185340:three_prime_UTR 45.0%
!!! GGACGCTTTTTCGTCGTAAT+AGG + chr1_4:75477533-75477552 None:intergenic 45.0%
AAACACGCTTCTGGATTTCG+TGG - chr1_4:75477571-75477590 Msa0185340:three_prime_UTR 45.0%
! GATCTAAAACCAAACGCTGC+AGG - chr1_4:75478121-75478140 Msa0185340:three_prime_UTR 45.0%
TATGGTTAACCTGCAGCGTT+TGG + chr1_4:75478133-75478152 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr1_4:75478375-75478394 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr1_4:75478398-75478417 Msa0185340:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_4:75478408-75478427 Msa0185340:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_4:75478554-75478573 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_4:75478555-75478574 None:intergenic 45.0%
TAGCCAGTTGATCCCTTTGT+CGG - chr1_4:75478773-75478792 Msa0185340:intron 45.0%
GGTCAGTGGTCAACGTAATT+TGG + chr1_4:75478868-75478887 None:intergenic 45.0%
AGTAGCATCAACTAGGTCAG+TGG + chr1_4:75478882-75478901 None:intergenic 45.0%
GCTTACAGATTTCCAAGGCA+TGG - chr1_4:75479163-75479182 Msa0185340:intron 45.0%
!! GGAAAAGAGTATTAGGGAGG+AGG + chr1_4:75479344-75479363 None:intergenic 45.0%
!! GAGGGAAAAGAGTATTAGGG+AGG + chr1_4:75479347-75479366 None:intergenic 45.0%
!! AGGCAAATGCTCTGCTTTTG+GGG + chr1_4:75479436-75479455 None:intergenic 45.0%
!! CAGGCAAATGCTCTGCTTTT+GGG + chr1_4:75479437-75479456 None:intergenic 45.0%
! ACAGGCAAATGCTCTGCTTT+TGG + chr1_4:75479438-75479457 None:intergenic 45.0%
! AAAAGCAGAGCATTTGCCTG+TGG - chr1_4:75479437-75479456 Msa0185340:intron 45.0%
TGAATTTCCCCATGCTAGCA+CGG + chr1_4:75479580-75479599 None:intergenic 45.0%
CTAGCATGGGGAAATTCAGT+GGG - chr1_4:75479582-75479601 Msa0185340:three_prime_UTR 45.0%
TAGCATGGGGAAATTCAGTG+GGG - chr1_4:75479583-75479602 Msa0185340:three_prime_UTR 45.0%
GATGTTGCAGTTGCTAAAGC+TGG - chr1_4:75479618-75479637 Msa0185340:intron 45.0%
AGTTGCTAAAGCTGGTCATC+CGG - chr1_4:75479626-75479645 Msa0185340:intron 45.0%
!! TGTTGGTCTTGGAACTGCTT+TGG - chr1_4:75479695-75479714 Msa0185340:intron 45.0%
!! GTTCCTGCTTTTAAGCCTCA+TGG - chr1_4:75479791-75479810 Msa0185340:three_prime_UTR 45.0%
!! TCCTGCTTTTAAGCCTCATG+GGG - chr1_4:75479793-75479812 Msa0185340:three_prime_UTR 45.0%
TTACTAAGAGAGACCCCATG+AGG + chr1_4:75479809-75479828 None:intergenic 45.0%
AAAACCTAGGCACTCGGAAT+CGG + chr1_4:75479842-75479861 None:intergenic 45.0%
! ATTCCGAGTGCCTAGGTTTT+GGG - chr1_4:75479842-75479861 Msa0185340:three_prime_UTR 45.0%
AGACAGAATCCCCAAAACCT+AGG + chr1_4:75479855-75479874 None:intergenic 45.0%
!! TTTTGGGGATTCTGTCTCGT+AGG - chr1_4:75479858-75479877 Msa0185340:three_prime_UTR 45.0%
!! TAGGGGATAGGGGTTAGTTA+GGG + chr1_4:75480155-75480174 None:intergenic 45.0%
!! TTAGGGGATAGGGGTTAGTT+AGG + chr1_4:75480156-75480175 None:intergenic 45.0%
! TCACGCACTCTCTGATTTGT+TGG - chr1_4:75480577-75480596 Msa0185340:CDS 45.0%
TGGTGGTATTAAGCTTGTGG+TGG - chr1_4:75480730-75480749 Msa0185340:CDS 45.0%
GGTGGTATTAAGCTTGTGGT+GGG - chr1_4:75480731-75480750 Msa0185340:CDS 45.0%
GTGGTATTAAGCTTGTGGTG+GGG - chr1_4:75480732-75480751 Msa0185340:CDS 45.0%
! TGAGTTGAGTAGCAGACATC+AGG - chr1_4:75480933-75480952 Msa0185340:intron 45.0%
AGTAGCAGACATCAGGACAT+TGG - chr1_4:75480940-75480959 Msa0185340:intron 45.0%
ACTACACATGCCATATCCCT+AGG - chr1_4:75481175-75481194 Msa0185340:intron 45.0%
GATTTAGTCCCACATTGCCT+AGG + chr1_4:75481195-75481214 None:intergenic 45.0%
TGCCGTAATTATGCAGCTAG+AGG - chr1_4:75481273-75481292 Msa0185340:intron 45.0%
TTTCTTCGGTGATGTCTGCA+TGG - chr1_4:75481562-75481581 Msa0185340:intron 45.0%
TTCTTCGGTGATGTCTGCAT+GGG - chr1_4:75481563-75481582 Msa0185340:intron 45.0%
TGTGAGTCTGTTCAGACAGA+AGG - chr1_4:75481589-75481608 Msa0185340:intron 45.0%
! CCGGGTCACTTTGTCAAAAA+TGG + chr1_4:75481688-75481707 None:intergenic 45.0%
CGGCATCATGGAAGAGTTAT+AGG - chr1_4:75481705-75481724 Msa0185340:intron 45.0%
TGTTTCAGTGAGGGTTGTGA+AGG - chr1_4:75481737-75481756 Msa0185340:intron 45.0%
!! GGCTTTAAGACACGGTATTG+TGG - chr1_4:75481778-75481797 Msa0185340:intron 45.0%
TCCTTGTTCTCCAATGTGAC+AGG - chr1_4:75481919-75481938 Msa0185340:intron 45.0%
ACCTGTCACATTGGAGAACA+AGG + chr1_4:75481923-75481942 None:intergenic 45.0%
TCAATTCAAGAAGGCCTGTC+GGG - chr1_4:75482003-75482022 Msa0185340:intron 45.0%
GAGCAGTGCAGGTATAACTT+TGG - chr1_4:75482055-75482074 Msa0185340:intron 45.0%
TGCTCTTAGCTAATGTCGTG+TGG + chr1_4:75482685-75482704 None:intergenic 45.0%
!!! TGTCACTTTTACACGGTGGT+CGG - chr1_4:75482766-75482785 Msa0185340:CDS 45.0%
CTCTCAAGCTTAGTGCTAGA+AGG - chr1_4:75483076-75483095 Msa0185340:CDS 45.0%
ATTAAGAGGGATGGAGAGGG+AGG + chr1_4:75476884-75476903 None:intergenic 50.0%
AAGATGGGGCGATGTTGTTG+AGG + chr1_4:75476937-75476956 None:intergenic 50.0%
GGATTGAATGGGGCAAGATG+GGG + chr1_4:75476951-75476970 None:intergenic 50.0%
TGCCCCATTCAATCCAATGG+CGG - chr1_4:75476956-75476975 Msa0185340:three_prime_UTR 50.0%
TGCCGCCATTGGATTGAATG+GGG + chr1_4:75476961-75476980 None:intergenic 50.0%
GATGCCGCCATTGGATTGAA+TGG + chr1_4:75476963-75476982 None:intergenic 50.0%
ATGAGGAGAATGGAGAGGGA+GGG + chr1_4:75477031-75477050 None:intergenic 50.0%
GAGGATGAGGAGAATGGAGA+GGG + chr1_4:75477035-75477054 None:intergenic 50.0%
!! GGTGAGAAGCGGTTTTGATG+AGG + chr1_4:75477069-75477088 None:intergenic 50.0%
ACACTTCTCGCTCTCGGTAA+CGG - chr1_4:75477154-75477173 Msa0185340:three_prime_UTR 50.0%
! AAGAGCAGAGACGAAAGCAC+CGG + chr1_4:75477257-75477276 None:intergenic 50.0%
! TGCTCCTTTTCCCGTTGATC+CGG - chr1_4:75477303-75477322 Msa0185340:three_prime_UTR 50.0%
ACATCTCTAACAAACGGCGC+CGG + chr1_4:75477325-75477344 None:intergenic 50.0%
ATTTGGGAATGGCCAATCGG+AGG - chr1_4:75477470-75477489 Msa0185340:three_prime_UTR 50.0%
TTTGGGAATGGCCAATCGGA+GGG - chr1_4:75477471-75477490 Msa0185340:three_prime_UTR 50.0%
TCGGAGGGAAAAGAGTTCTG+CGG - chr1_4:75477486-75477505 Msa0185340:three_prime_UTR 50.0%
CAACCAACTGAGCTAAGCTC+AGG + chr1_4:75477679-75477698 None:intergenic 50.0%
CTGAGCTTAGCTCAGTTGGT+TGG - chr1_4:75477677-75477696 Msa0185340:intron 50.0%
GCTCCAAGGCCATTGTTTCA+AGG + chr1_4:75478161-75478180 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_4:75478550-75478569 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_4:75478556-75478575 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_4:75478553-75478572 Msa0185340:intron 50.0%
CTACCGACAAAGGGATCAAC+TGG + chr1_4:75478779-75478798 None:intergenic 50.0%
AGCAGAGTATGGGATACGTC+AGG + chr1_4:75479146-75479165 None:intergenic 50.0%
!! ATTGCGATGGTGCTGGTTGA+GGG + chr1_4:75479224-75479243 None:intergenic 50.0%
CATGCATACAAGAGGGCTAG+TGG + chr1_4:75479285-75479304 None:intergenic 50.0%
TGAACACTACGGACCACAGA+GGG + chr1_4:75479365-75479384 None:intergenic 50.0%
ATGAACACTACGGACCACAG+AGG + chr1_4:75479366-75479385 None:intergenic 50.0%
!! GGCAAATGCTCTGCTTTTGG+GGG + chr1_4:75479435-75479454 None:intergenic 50.0%
GAAGCGTGCCTAAAGCTTCA+AGG + chr1_4:75479527-75479546 None:intergenic 50.0%
GTAAGACCTAGGAATGCCTG+CGG + chr1_4:75479558-75479577 None:intergenic 50.0%
ATGCTAGCACGGTAAGACCT+AGG + chr1_4:75479569-75479588 None:intergenic 50.0%
TAGGTCTTACCGTGCTAGCA+TGG - chr1_4:75479568-75479587 Msa0185340:three_prime_UTR 50.0%
AGGTCTTACCGTGCTAGCAT+GGG - chr1_4:75479569-75479588 Msa0185340:three_prime_UTR 50.0%
GCTAGCATGGGGAAATTCAG+TGG - chr1_4:75479581-75479600 Msa0185340:three_prime_UTR 50.0%
AGCATGGGGAAATTCAGTGG+GGG - chr1_4:75479584-75479603 Msa0185340:three_prime_UTR 50.0%
TAAAGCTGGTCATCCGGCAA+TGG - chr1_4:75479632-75479651 Msa0185340:intron 50.0%
! CATTGGTCCAGCAAAGCATC+CGG + chr1_4:75479664-75479683 None:intergenic 50.0%
ACCCCATGAGGCTTAAAAGC+AGG + chr1_4:75479797-75479816 None:intergenic 50.0%
AAACCTAGGCACTCGGAATC+GGG + chr1_4:75479841-75479860 None:intergenic 50.0%
! GATTCCGAGTGCCTAGGTTT+TGG - chr1_4:75479841-75479860 Msa0185340:three_prime_UTR 50.0%
! TTCCGAGTGCCTAGGTTTTG+GGG - chr1_4:75479843-75479862 Msa0185340:three_prime_UTR 50.0%
ATCCCCAAAACCTAGGCACT+CGG + chr1_4:75479848-75479867 None:intergenic 50.0%
! TGAGTTGAGTGTGAGAGACG+AGG + chr1_4:75480108-75480127 None:intergenic 50.0%
TGCCATATCCCTAGGCAATG+TGG - chr1_4:75481183-75481202 Msa0185340:intron 50.0%
GCCATATCCCTAGGCAATGT+GGG - chr1_4:75481184-75481203 Msa0185340:intron 50.0%
TCCCACATTGCCTAGGGATA+TGG + chr1_4:75481188-75481207 None:intergenic 50.0%
TTGTGTAGGTGTGAAGGGGA+TGG + chr1_4:75481217-75481236 None:intergenic 50.0%
! AGTGTTGGAGGCTGCAATGA+TGG - chr1_4:75481241-75481260 Msa0185340:intron 50.0%
TGGGAATTCTGCCTTCACTG+TGG + chr1_4:75481303-75481322 None:intergenic 50.0%
TCAATGACGAAGAGCAGTGC+AGG - chr1_4:75482044-75482063 Msa0185340:intron 50.0%
CACCAGGTGTAGCGTACATT+GGG + chr1_4:75482140-75482159 None:intergenic 50.0%
ACACCAGGTGTAGCGTACAT+TGG + chr1_4:75482141-75482160 None:intergenic 50.0%
ATGTACGCTACACCTGGTGT+TGG - chr1_4:75482141-75482160 Msa0185340:intron 50.0%
CAACAAGAACAGGTGCTTCC+GGG + chr1_4:75482607-75482626 None:intergenic 50.0%
CCAACAAGAACAGGTGCTTC+CGG + chr1_4:75482608-75482627 None:intergenic 50.0%
ACAATCCATTTGGCCCACCT+GGG + chr1_4:75483042-75483061 None:intergenic 50.0%
AACAATCCATTTGGCCCACC+TGG + chr1_4:75483043-75483062 None:intergenic 50.0%
!! AGGTGGGCCAAATGGATTGT+TGG - chr1_4:75483042-75483061 Msa0185340:CDS 50.0%
CTTTCTCTCCATCAGCCACT+TGG + chr1_4:75483142-75483161 None:intergenic 50.0%
GTAGTTGAGGATGCCGCCAT+TGG + chr1_4:75476972-75476991 None:intergenic 55.0%
AGGGAGGGGATTGAGAGGAT+GGG + chr1_4:75477016-75477035 None:intergenic 55.0%
TGAGGAGAATGGAGAGGGAG+GGG + chr1_4:75477030-75477049 None:intergenic 55.0%
GATGAGGAGAATGGAGAGGG+AGG + chr1_4:75477032-75477051 None:intergenic 55.0%
GGAGGATGAGGAGAATGGAG+AGG + chr1_4:75477036-75477055 None:intergenic 55.0%
! ACCGAGAGCGAGAAGTGTGA+CGG + chr1_4:75477152-75477171 None:intergenic 55.0%
GCGAGAGATGAGAAGACGTC+GGG + chr1_4:75477184-75477203 None:intergenic 55.0%
GGCGAGAGATGAGAAGACGT+CGG + chr1_4:75477185-75477204 None:intergenic 55.0%
!! GAAGCCGGTACGGTATTGAC+CGG + chr1_4:75477218-75477237 None:intergenic 55.0%
!! GGTCAATACCGTACCGGCTT+CGG - chr1_4:75477217-75477236 Msa0185340:three_prime_UTR 55.0%
! AACAAACGGCGCCGGATCAA+CGG + chr1_4:75477317-75477336 None:intergenic 55.0%
CCAACTGAGCTAAGCTCAGG+AGG + chr1_4:75477676-75477695 None:intergenic 55.0%
CCTCCTGAGCTTAGCTCAGT+TGG - chr1_4:75477673-75477692 Msa0185340:intron 55.0%
! AGTGGCTGGGGTTTGAAACC+CGG + chr1_4:75477726-75477745 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_4:75478542-75478561 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_4:75478541-75478560 Msa0185340:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_4:75478542-75478561 Msa0185340:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_4:75478548-75478567 Msa0185340:intron 55.0%
!! CATTGCGATGGTGCTGGTTG+AGG + chr1_4:75479225-75479244 None:intergenic 55.0%
CTCAACCAGCACCATCGCAA+TGG - chr1_4:75479223-75479242 Msa0185340:intron 55.0%
CTGTTCCATTGCGATGGTGC+TGG + chr1_4:75479231-75479250 None:intergenic 55.0%
! AGCAGAGCATTTGCCTGTGG+TGG - chr1_4:75479440-75479459 Msa0185340:intron 55.0%
GCATTTGCCTGTGGTGGTTG+TGG - chr1_4:75479446-75479465 Msa0185340:intron 55.0%
ATTCACGAGCTCTCCAGCTG+TGG + chr1_4:75479502-75479521 None:intergenic 55.0%
AAACTGCCGCAGGCATTCCT+AGG - chr1_4:75479549-75479568 Msa0185340:three_prime_UTR 55.0%
GGTCTTACCGTGCTAGCATG+GGG - chr1_4:75479570-75479589 Msa0185340:three_prime_UTR 55.0%
TGGTCATCCGGCAATGGCAA+TGG - chr1_4:75479638-75479657 Msa0185340:intron 55.0%
GTGAGAGACGAGGAGAAACC+AGG + chr1_4:75480098-75480117 None:intergenic 55.0%
GGGAGTCACGAGCAATGAGT+TGG + chr1_4:75480226-75480245 None:intergenic 55.0%
GAGTGCGTGAAAAGACCTGC+AGG + chr1_4:75480567-75480586 None:intergenic 55.0%
CTAGAGGCAGACCACAGTGA+AGG - chr1_4:75481289-75481308 Msa0185340:intron 55.0%
GACAAAGTGACCCGGCATCA+TGG - chr1_4:75481693-75481712 Msa0185340:intron 55.0%
! AGCTTGTTCTGTTGCCCGAC+AGG + chr1_4:75482020-75482039 None:intergenic 55.0%
CTCCCAATGTACGCTACACC+TGG - chr1_4:75482135-75482154 Msa0185340:intron 55.0%
GCGCTCTTTGAATGGAACCG+TGG - chr1_4:75482403-75482422 Msa0185340:intron 55.0%
!! CCGGAAGCACCTGTTCTTGT+TGG - chr1_4:75482605-75482624 Msa0185340:CDS 55.0%
AGGACCAGTGTTAGGAACCC+AGG - chr1_4:75483022-75483041 Msa0185340:CDS 55.0%
ACCAGTGTTAGGAACCCAGG+TGG - chr1_4:75483025-75483044 Msa0185340:CDS 55.0%
CCAGTGTTAGGAACCCAGGT+GGG - chr1_4:75483026-75483045 Msa0185340:CDS 55.0%
ACTGAGTGGGGTTGTCCAAG+TGG - chr1_4:75483124-75483143 Msa0185340:CDS 55.0%
!! TATGGGTGCTGACTGCTGAG+AGG - chr1_4:75483188-75483207 Msa0185340:CDS 55.0%
GAGGGAGGGGATTGAGAGGA+TGG + chr1_4:75477017-75477036 None:intergenic 60.0%
TGGAGAGGGAGGGGATTGAG+AGG + chr1_4:75477021-75477040 None:intergenic 60.0%
AGTGTGACGGCGGCCATACT+AGG + chr1_4:75477139-75477158 None:intergenic 60.0%
! GAGAGCGAGAAGTGTGACGG+CGG + chr1_4:75477149-75477168 None:intergenic 60.0%
GCCGTCACACTTCTCGCTCT+CGG - chr1_4:75477148-75477167 Msa0185340:three_prime_UTR 60.0%
! GTATTGACCGGCGCGAAGAG+CGG + chr1_4:75477206-75477225 None:intergenic 60.0%
! GTATAGCGCCGAAGCCGGTA+CGG + chr1_4:75477228-75477247 None:intergenic 60.0%
! GGAGAGTATAGCGCCGAAGC+CGG + chr1_4:75477233-75477252 None:intergenic 60.0%
TTCGGCGCTATACTCTCCGC+CGG - chr1_4:75477235-75477254 Msa0185340:three_prime_UTR 60.0%
!! AGCAGAGACGAAAGCACCGG+CGG + chr1_4:75477254-75477273 None:intergenic 60.0%
! ACAAACGGCGCCGGATCAAC+GGG + chr1_4:75477316-75477335 None:intergenic 60.0%
GACAGGAAGCTCCCATGCCT+TGG + chr1_4:75479178-75479197 None:intergenic 60.0%
ACGAAGGCCACAACCACCAC+AGG + chr1_4:75479456-75479475 None:intergenic 60.0%
CACGCTTCTCAAACTGCCGC+AGG - chr1_4:75479539-75479558 Msa0185340:three_prime_UTR 60.0%
CATCCGGCAATGGCAATGGC+CGG - chr1_4:75479642-75479661 Msa0185340:intron 60.0%
CATCCGGCCATTGCCATTGC+CGG + chr1_4:75479648-75479667 None:intergenic 60.0%
GCAATGGCCGGATGCTTTGC+TGG - chr1_4:75479654-75479673 Msa0185340:intron 60.0%
CCCACCTGGGTTCCTAACAC+TGG + chr1_4:75483029-75483048 None:intergenic 60.0%
AGGAACCCAGGTGGGCCAAA+TGG - chr1_4:75483034-75483053 Msa0185340:CDS 60.0%
GGGGTTGTCCAAGTGGCTGA+TGG - chr1_4:75483131-75483150 Msa0185340:CDS 60.0%
! CGCGCCGGTCAATACCGTAC+CGG - chr1_4:75477211-75477230 Msa0185340:three_prime_UTR 65.0%
! GGCGCCGGATCAACGGGAAA+AGG + chr1_4:75477310-75477329 None:intergenic 65.0%
GGTCCCGATTCCGAGTGCCT+AGG - chr1_4:75479835-75479854 Msa0185340:three_prime_UTR 65.0%
TCTCTCGCCGCTCTTCGCGC+CGG - chr1_4:75477196-75477215 Msa0185340:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 75476815 75483277 75476815 ID=Msa0185340;Name=Msa0185340
chr1_4 mRNA 75476815 75483277 75476815 ID=Msa0185340-mRNA-1;Parent=Msa0185340;Name=Msa0185340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.8|1|0.5|0.4|5|1548|502
chr1_4 exon 75476815 75477688 75476815 ID=Msa0185340-mRNA-1:exon:25703;Parent=Msa0185340-mRNA-1
chr1_4 exon 75478027 75478151 75478027 ID=Msa0185340-mRNA-1:exon:25702;Parent=Msa0185340-mRNA-1
chr1_4 exon 75479522 75479621 75479522 ID=Msa0185340-mRNA-1:exon:25701;Parent=Msa0185340-mRNA-1
chr1_4 exon 75479708 75480921 75479708 ID=Msa0185340-mRNA-1:exon:25700;Parent=Msa0185340-mRNA-1
chr1_4 exon 75482534 75483277 75482534 ID=Msa0185340-mRNA-1:exon:25699;Parent=Msa0185340-mRNA-1
chr1_4 CDS 75482534 75483277 75482534 ID=Msa0185340-mRNA-1:cds;Parent=Msa0185340-mRNA-1
chr1_4 CDS 75480157 75480921 75480157 ID=Msa0185340-mRNA-1:cds;Parent=Msa0185340-mRNA-1
chr1_4 three_prime_UTR 75479708 75480156 75479708 ID=Msa0185340-mRNA-1:three_prime_utr;Parent=Msa0185340-mRNA-1
chr1_4 three_prime_UTR 75479522 75479621 75479522 ID=Msa0185340-mRNA-1:three_prime_utr;Parent=Msa0185340-mRNA-1
chr1_4 three_prime_UTR 75478027 75478151 75478027 ID=Msa0185340-mRNA-1:three_prime_utr;Parent=Msa0185340-mRNA-1
chr1_4 three_prime_UTR 75476815 75477688 75476815 ID=Msa0185340-mRNA-1:three_prime_utr;Parent=Msa0185340-mRNA-1
Gene Sequence

>Msa0185340

ATGGCTTTGAAAACCATTTCACTCTCACTAATCCTCACTCTCATTATCATCTTCTTCATCACAATTCCTCCCTCTCCATCCCTCTTAATCACAACAACTTCTCCTCTTCGTAGATCACTCCTCAACAACATCGCCCCATCTTGCCCCATTCAATCCAATGGCGGCATCCTCAACTACCACTGCATTTTCCCTCAAACTCCCATCCTCTCAATCCCCTCCCTCTCCATTCTCCTCATCCTCCATTTCTACATCCTCATCAAAACCGCTTCTCACCATTTCTCAATCGTCACAACTAAACTCGCTTCTCACCTCAATCTCTCTCCTAGTATGGCCGCCGTCACACTTCTCGCTCTCGGTAACGGCTCTCCCGACGTCTTCTCATCTCTCGCCGCTCTTCGCGCCGGTCAATACCGTACCGGCTTCGGCGCTATACTCTCCGCCGGTGCTTTCGTCTCTGCTCTTGTTGTCGGCTTTGTCGCGATCTACGCTGCTCCTTTTCCCGTTGATCCGGCGCCGTTTGTTAGAGATGTGTTGTTCTACTTAACTGCTGCTATGTTTCTGTTTTATGTTTATCTTAGTGCTGAGATTTTTCTATGGCAAGCCGTTGGATTCGTTGCGTTCTATCTTTTCTTTGTTGGTTTTGTGTTTTACATGGATTTGGGAATGGCCAATCGGAGGGAAAAGAGTTCTGCGGATCTTGAGGGACAAATTGATTCCTATTACGACGAAAAAGCGTCCGGATCTATTTCCAAGGCATGGGAGCTTCCTGTCTCAACCCTCTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAACAGATTTTATGCATCGGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCATGTAACTCATTCGTGCCACTTAATCATCCCATAGTTTTCCTCCTCCCTAATACTCTTTTCCCTCTGTGGTCCGTAGTGTTCATGACAAGCTTCTCTCTTGCATTTCTCCATTTTGTATTGGAAAAAGAACCCCCAAAAGCAGAGCATTTGCCTGTGGTGGTTGTGGCCTTCGTTATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTCGTGAATTGCCTTGAAGCTTTAGGCACGCTTCTCAAACTGCCGCAGGCATTCCTAGGTCTTACCGTGCTAGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCGGCAATGGCAATGGCCGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACAAATATATATCCTAAAGCCTATGAACTTAATTTCCACGTTGGTATAGTGATTGCATTTGTGTTCCTGCTTTTAAGCCTCATGGGGTCTCTCTTAGTAATCACTTGGTCCCGATTCCGAGTGCCTAGGTTTTGGGGATTCTGTCTCGTAGGCCTCTATATTGTTTTTATGGCAGCGAGTTCAGCAGTAGCCATCTTTTCAAGTTGA
Protein sequence

>Msa0185340

MALKTISLSLILTLIIIFFITIPPSPSLLITTTSPLRRSLLNNIAPSCPIQSNGGILNYHCIFPQTPILSIPSLSILLILHFYILIKTASHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFPVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGMANRREKSSADLEGQIDSYYDEKASGSISKAWELPVSTLLRLTIPQPAPSQWNRFYASANIALCPLALLYACNSFVPLNHPIVFLLPNTLFPLWSVVFMTSFSLAFLHFVLEKEPPKAEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLPQAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIVFMAASSAVAIFSS*