AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381210 MtrunA17_Chr7g0273001 94.208 518 14 1 1 502 1 518 0.0 957
Msa1381210 MtrunA17_Chr6g0460831 30.285 492 292 8 55 499 95 582 2.13e-49 178
Msa1381210 MtrunA17_Chr6g0460821 30.675 489 271 12 37 468 60 537 3.84e-42 158
Msa1381210 MtrunA17_Chr7g0254091 30.750 400 230 9 59 441 95 464 1.55e-31 127
Msa1381210 MtrunA17_Chr8g0344371 32.171 258 161 4 242 492 388 638 1.40e-29 122
Msa1381210 MtrunA17_Chr8g0344371 31.818 176 110 4 43 211 115 287 3.66e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381210 AT1G08960.1 67.041 534 138 6 7 502 13 546 0.0 642
Msa1381210 AT5G17860.1 31.789 475 275 10 59 492 90 556 3.41e-57 199
Msa1381210 AT5G17860.2 32.207 444 279 10 59 492 90 521 2.09e-52 186
Msa1381210 AT5G17850.1 29.167 552 313 17 5 495 14 548 9.66e-44 162
Msa1381210 AT5G17850.2 29.167 552 313 17 5 495 14 548 9.66e-44 162
Msa1381210 AT3G14070.1 27.500 520 297 12 49 491 112 628 1.80e-42 160
Msa1381210 AT1G54115.1 32.000 250 155 4 248 491 389 629 5.18e-29 121
Msa1381210 AT1G54115.1 34.091 176 109 3 47 215 109 284 1.97e-19 92.0

Find 221 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGATTGGGTTTCAAATT+AGG 0.134965 tig0020424:-7120 None:intergenic
GAGAAGTTGTTGTGATTAAG+AGG 0.182955 tig0020424:-3844 None:intergenic
CGTATTGAGATTATGTTATA+TGG 0.201229 tig0020424:+10118 Msa1381210:three_prime_UTR
ACAGGCAAATGCTCTGCTTT+TGG 0.211093 tig0020424:-6384 None:intergenic
GGGATTATTTCCTCACTTCT+TGG 0.228457 tig0020424:+9757 Msa1381210:three_prime_UTR
CACAGAGGGAAAAGAGTATT+AGG 0.243083 tig0020424:-6297 None:intergenic
GATTCCGAGTGCCTAGGTTT+TGG 0.249551 tig0020424:+6790 Msa1381210:CDS
TTAGGGGATAGGGGTTAGTT+AGG 0.255630 tig0020424:-7102 None:intergenic
AGAGATTGGGTTTCAAATTA+GGG 0.264021 tig0020424:-7119 None:intergenic
GCAATGAGTTGGATTTATTA+AGG 0.281711 tig0020424:-7161 None:intergenic
AAATTAAGTTCATAGGCTTT+AGG 0.315192 tig0020424:-6690 None:intergenic
ATTAGGGAGGAGGAAAACTA+TGG 0.320350 tig0020424:-6280 None:intergenic
TTCGTCTCTGCTCTTGTTGT+CGG 0.331098 tig0020424:+4211 Msa1381210:CDS
GATGAGGAGAATGGAGAGGG+AGG 0.338258 tig0020424:-3978 None:intergenic
GAGGGAGGGGATTGAGAGGA+TGG 0.342271 tig0020424:-3963 None:intergenic
CCGGAAGCACCTGTTCTTGT+TGG 0.345802 tig0020424:+9553 Msa1381210:three_prime_UTR
GTGAATTGCCTTGAAGCTTT+AGG 0.347493 tig0020424:+6465 Msa1381210:CDS
CCTTCGTTATGAGTGTGTTT+TGG 0.348369 tig0020424:+6418 Msa1381210:CDS
CAACGAGATATCAAAGAGAT+TGG 0.350248 tig0020424:-7133 None:intergenic
AACACCAAACTGAAATTTGT+TGG 0.351083 tig0020424:-7460 None:intergenic
GGATTATTTCCTCACTTCTT+GGG 0.352175 tig0020424:+9758 Msa1381210:three_prime_UTR
CATCCGGCCATTGCCATTGC+CGG 0.357339 tig0020424:-6594 None:intergenic
GCAATGGCCGGATGCTTTGC+TGG 0.358095 tig0020424:+6603 Msa1381210:CDS
AACAATCCATTTGGCCCACC+TGG 0.365523 tig0020424:-9988 None:intergenic
TGTTGGTCTTGGAACTGCTT+TGG 0.368704 tig0020424:+6644 Msa1381210:CDS
CCAACAAGAACAGGTGCTTC+CGG 0.371746 tig0020424:-9553 None:intergenic
TACTTTGACTGCACAAAACT+TGG 0.387919 tig0020424:+9870 Msa1381210:three_prime_UTR
CCTCAATCTCTCTCCTAGTA+TGG 0.388430 tig0020424:+4072 Msa1381210:CDS
CGACATTAGCTAAGAGCATT+TGG 0.389034 tig0020424:+9635 Msa1381210:three_prime_UTR
CTTCATAGAAAGATTTAGAT+AGG 0.389924 tig0020424:+6894 Msa1381210:three_prime_UTR
GGTCAATACCGTACCGGCTT+CGG 0.391101 tig0020424:+4166 Msa1381210:CDS
TTCTATATTGTTGCATTGCA+TGG 0.391207 tig0020424:+9905 Msa1381210:three_prime_UTR
AAACTATTTAAGAAGAAAAC+TGG 0.396532 tig0020424:+6984 Msa1381210:three_prime_UTR
TTTAACATGCTTGTTGGTCT+TGG 0.397900 tig0020424:+6633 Msa1381210:CDS
CTCTCAAGCTTAGTGCTAGA+AGG 0.399250 tig0020424:+10024 Msa1381210:three_prime_UTR
TATTCCAACAAATTTCAGTT+TGG 0.399670 tig0020424:+7456 Msa1381210:three_prime_UTR
TGAGGAGAATGGAGAGGGAG+GGG 0.401522 tig0020424:-3976 None:intergenic
CAACAAGAACAGGTGCTTCC+GGG 0.405795 tig0020424:-9552 None:intergenic
AAAACCTAGGCACTCGGAAT+CGG 0.406998 tig0020424:-6788 None:intergenic
GAGGATTAGTGAGAGTGAAA+TGG 0.411408 tig0020424:-3777 None:intergenic
TAGTGGACAAAGAGCGATAT+TGG 0.413049 tig0020424:-6214 None:intergenic
ATTGAGAGGATGGGAGTTTG+AGG 0.414253 tig0020424:-3953 None:intergenic
AGCTTGTTCTGTTGCCCGAC+AGG 0.414924 tig0020424:-8965 None:intergenic
GGGTTTCAAATTAGGGGATA+GGG 0.416477 tig0020424:-7112 None:intergenic
AAATGACCTTCAAAACTTCA+TGG 0.416645 tig0020424:-7490 None:intergenic
GAGGGATTGTCAATCTTAAG+AGG 0.419753 tig0020424:-6152 None:intergenic
CATTGCGATGGTGCTGGTTG+AGG 0.420449 tig0020424:-6171 None:intergenic
TGTACTTGCAACAAATTTCC+AGG 0.422420 tig0020424:-9528 None:intergenic
TGGATTGAATGGGGCAAGAT+GGG 0.423000 tig0020424:-3898 None:intergenic
ACAAACGGCGCCGGATCAAC+GGG 0.425874 tig0020424:-4262 None:intergenic
GTTACCTAGGAAAATCGTTA+TGG 0.427493 tig0020424:-9421 None:intergenic
TAGGGGATAGGGGTTAGTTA+GGG 0.431453 tig0020424:-7101 None:intergenic
CGGAATTACAAAAGCTGAAG+TGG 0.438591 tig0020424:+9734 Msa1381210:three_prime_UTR
GCTAGAAGGTTAATACTAGA+AGG 0.445809 tig0020424:+10038 Msa1381210:three_prime_UTR
TGGGTTTCAAATTAGGGGAT+AGG 0.449743 tig0020424:-7113 None:intergenic
TGGAGAGGGAGGGGATTGAG+AGG 0.453858 tig0020424:-3967 None:intergenic
GCATTTGCCTGTGGTGGTTG+TGG 0.453910 tig0020424:+6395 Msa1381210:CDS
GATGCCGCCATTGGATTGAA+TGG 0.456465 tig0020424:-3909 None:intergenic
AACGAGATATCAAAGAGATT+GGG 0.460124 tig0020424:-7132 None:intergenic
GGATGTAGAAATGGAGGATG+AGG 0.460612 tig0020424:-3994 None:intergenic
AAACCTAGGCACTCGGAATC+GGG 0.460770 tig0020424:-6787 None:intergenic
CTTTCTCTCCATCAGCCACT+TGG 0.461429 tig0020424:-10087 None:intergenic
TTGGATTGAATGGGGCAAGA+TGG 0.462224 tig0020424:-3899 None:intergenic
GGAATAAGAAAGAACTGAGT+GGG 0.463568 tig0020424:+10059 Msa1381210:three_prime_UTR
AGAAACCAGGTATCAAGAAC+TGG 0.465897 tig0020424:-7031 None:intergenic
ATGCCGCCATTGGATTGAAT+GGG 0.469388 tig0020424:-3908 None:intergenic
AAACAATCAACTTGAAAAGA+TGG 0.469803 tig0020424:-6868 None:intergenic
CCAATGTTTAACATGCTTGT+TGG 0.469958 tig0020424:+6627 Msa1381210:CDS
TTGAGAGGATGGGAGTTTGA+GGG 0.470188 tig0020424:-3952 None:intergenic
TCAATTCAAGAAGGCCTGTC+GGG 0.472852 tig0020424:+8951 Msa1381210:three_prime_UTR
ACGAAGGCCACAACCACCAC+AGG 0.474486 tig0020424:-6402 None:intergenic
ATTGCGATGGTGCTGGTTGA+GGG 0.474576 tig0020424:-6170 None:intergenic
GAAGCGTGCCTAAAGCTTCA+AGG 0.475284 tig0020424:-6473 None:intergenic
TAGGTCTTACCGTGCTAGCA+TGG 0.482485 tig0020424:+6517 Msa1381210:CDS
TGGAAACAACCAACAAGAAC+AGG 0.482886 tig0020424:-9562 None:intergenic
CCACTAGTCAAATGATGTAA+TGG 0.483396 tig0020424:+9582 Msa1381210:three_prime_UTR
GTTGTTGTGATTAAGAGGGA+TGG 0.483470 tig0020424:-3839 None:intergenic
GACAGGAAGCTCCCATGCCT+TGG 0.483478 tig0020424:-6124 None:intergenic
AAACTGCCGCAGGCATTCCT+AGG 0.484727 tig0020424:+6498 Msa1381210:CDS
AGCTTTCTTCTCTTGAAGCT+CGG 0.488783 tig0020424:+7418 Msa1381210:intron
GGCGCCGGATCAACGGGAAA+AGG 0.489382 tig0020424:-4256 None:intergenic
CCATTACATCATTTGACTAG+TGG 0.490989 tig0020424:-9582 None:intergenic
AATTGGTTTATAAAATTGCC+CGG 0.491181 tig0020424:-9943 None:intergenic
AACGTGGAAATTAAGTTCAT+AGG 0.491726 tig0020424:-6697 None:intergenic
GCGAGAGATGAGAAGACGTC+GGG 0.494583 tig0020424:-4130 None:intergenic
AGGAACCCAGGTGGGCCAAA+TGG 0.494754 tig0020424:+9982 Msa1381210:three_prime_UTR
CACGCTTCTCAAACTGCCGC+AGG 0.495555 tig0020424:+6488 Msa1381210:CDS
GAAATGGAGGATGAGGAGAA+TGG 0.496656 tig0020424:-3987 None:intergenic
GAGGATGAGGAGAATGGAGA+GGG 0.497270 tig0020424:-3981 None:intergenic
ACAGAGGGAAAAGAGTATTA+GGG 0.497292 tig0020424:-6296 None:intergenic
AAAATCCAGTTCTTGATACC+TGG 0.497752 tig0020424:+7026 Msa1381210:three_prime_UTR
TCTTTCTCTATTGAAGATTG+AGG 0.498027 tig0020424:+7312 Msa1381210:three_prime_UTR
TAGTTGTGACGATTGAGAAA+TGG 0.500180 tig0020424:-4036 None:intergenic
GGAAAAGAGTATTAGGGAGG+AGG 0.503216 tig0020424:-6290 None:intergenic
GTGAGAGACGAGGAGAAACC+AGG 0.503320 tig0020424:-7044 None:intergenic
CTTACTACCAGAGCATCAAA+TGG 0.503841 tig0020424:+8906 Msa1381210:three_prime_UTR
AGAAGTTGTTGTGATTAAGA+GGG 0.504857 tig0020424:-3843 None:intergenic
GCTTACAGATTTCCAAGGCA+TGG 0.505102 tig0020424:+6112 Msa1381210:intron
AACAAACGGCGCCGGATCAA+CGG 0.505525 tig0020424:-4263 None:intergenic
GTAGTTGAGGATGCCGCCAT+TGG 0.505638 tig0020424:-3918 None:intergenic
AGTTGCTAAAGCTGGTCATC+CGG 0.505727 tig0020424:+6575 Msa1381210:CDS
GCCGTCACACTTCTCGCTCT+CGG 0.506649 tig0020424:+4097 Msa1381210:CDS
TGCAATGCAACAATATAGAA+AGG 0.507983 tig0020424:-9902 None:intergenic
AGGTGGGCCAAATGGATTGT+TGG 0.510861 tig0020424:+9990 Msa1381210:three_prime_UTR
GTGATTAAGAGGGATGGAGA+GGG 0.514627 tig0020424:-3833 None:intergenic
TGGTCATCCGGCAATGGCAA+TGG 0.515868 tig0020424:+6587 Msa1381210:CDS
CTGTTCCATTGCGATGGTGC+TGG 0.516010 tig0020424:-6177 None:intergenic
CCATACTAGGAGAGAGATTG+AGG 0.516197 tig0020424:-4072 None:intergenic
AAGAGTTCTGCGGATCTTGA+GGG 0.516492 tig0020424:+4445 Msa1381210:CDS
AAAGAGTTCTGCGGATCTTG+AGG 0.517795 tig0020424:+4444 Msa1381210:CDS
ATTAAGAGGGATGGAGAGGG+AGG 0.519227 tig0020424:-3830 None:intergenic
AGTGTGACGGCGGCCATACT+AGG 0.520260 tig0020424:-4085 None:intergenic
GTATTGAGATTATGTTATAT+GGG 0.521674 tig0020424:+10119 Msa1381210:three_prime_UTR
ATGAGGAGAATGGAGAGGGA+GGG 0.521792 tig0020424:-3977 None:intergenic
AAAACTATGGGATGATTAAG+TGG 0.522490 tig0020424:-6267 None:intergenic
AACAACACATCTCTAACAAA+CGG 0.524091 tig0020424:-4277 None:intergenic
TTTGGGAATGGCCAATCGGA+GGG 0.524305 tig0020424:+4420 Msa1381210:CDS
CATTGGTCCAGCAAAGCATC+CGG 0.524643 tig0020424:-6610 None:intergenic
GGTTTCAAATTAGGGGATAG+GGG 0.533769 tig0020424:-7111 None:intergenic
AGCAGAGACGAAAGCACCGG+CGG 0.534152 tig0020424:-4200 None:intergenic
GAGAGGAGAGAGTATTATCA+AGG 0.536518 tig0020424:+10153 Msa1381210:three_prime_UTR
CATCCGGCAATGGCAATGGC+CGG 0.540312 tig0020424:+6591 Msa1381210:CDS
CTTACAGATTTCCAAGGCAT+GGG 0.541325 tig0020424:+6113 Msa1381210:intron
TCAATGACGAAGAGCAGTGC+AGG 0.542295 tig0020424:+8992 Msa1381210:three_prime_UTR
ACCCCATGAGGCTTAAAAGC+AGG 0.545048 tig0020424:-6743 None:intergenic
AGGTCTTACCGTGCTAGCAT+GGG 0.548021 tig0020424:+6518 Msa1381210:CDS
GGGAGTCACGAGCAATGAGT+TGG 0.549283 tig0020424:-7172 None:intergenic
AGGGAGGGGATTGAGAGGAT+GGG 0.549440 tig0020424:-3962 None:intergenic
AGGACCAGTGTTAGGAACCC+AGG 0.550048 tig0020424:+9970 Msa1381210:three_prime_UTR
GTTTATGCGTATTTGACACC+TGG 0.550987 tig0020424:+9510 Msa1381210:three_prime_UTR
CGCGCCGGTCAATACCGTAC+CGG 0.551721 tig0020424:+4160 Msa1381210:CDS
GGTCCCGATTCCGAGTGCCT+AGG 0.552227 tig0020424:+6784 Msa1381210:CDS
TGAGTTGAGTGTGAGAGACG+AGG 0.553112 tig0020424:-7054 None:intergenic
TTTCTTGTCTACAGTTACCT+AGG 0.553185 tig0020424:-9434 None:intergenic
AATCTTAAGAGGGTTGAGAC+AGG 0.554164 tig0020424:-6141 None:intergenic
CCCACCTGGGTTCCTAACAC+TGG 0.554568 tig0020424:-9974 None:intergenic
GGGGTTGTCCAAGTGGCTGA+TGG 0.555275 tig0020424:+10079 Msa1381210:three_prime_UTR
TAACTGTAGACAAGAAATGT+TGG 0.558214 tig0020424:+9440 Msa1381210:three_prime_UTR
TTCGGCGCTATACTCTCCGC+CGG 0.558460 tig0020424:+4184 Msa1381210:CDS
TCTCTCGCCGCTCTTCGCGC+CGG 0.558505 tig0020424:+4145 Msa1381210:CDS
GTCAAATACGCATAAACTTG+TGG 0.560739 tig0020424:-9504 None:intergenic
TTCAATTCAAGAAGGCCTGT+CGG 0.561563 tig0020424:+8950 Msa1381210:three_prime_UTR
GAGATTGGGTTTCAAATTAG+GGG 0.562024 tig0020424:-7118 None:intergenic
CATGCATACAAGAGGGCTAG+TGG 0.564229 tig0020424:-6231 None:intergenic
AGAAGATGATAATGAGAGTG+AGG 0.566303 tig0020424:-3796 None:intergenic
ACACTTCTCGCTCTCGGTAA+CGG 0.567195 tig0020424:+4103 Msa1381210:CDS
AGGAATAAGAAAGAACTGAG+TGG 0.567355 tig0020424:+10058 Msa1381210:three_prime_UTR
TGAGGAATAGCAATGGAAAG+TGG 0.567770 tig0020424:+9479 Msa1381210:three_prime_UTR
TGGATTTGGGAATGGCCAAT+CGG 0.570540 tig0020424:+4416 Msa1381210:CDS
TGTGATTAAGAGGGATGGAG+AGG 0.573624 tig0020424:-3834 None:intergenic
TCTTGCCCCATTCAATCCAA+TGG 0.576988 tig0020424:+3902 Msa1381210:CDS
TGATGAGGATGTAGAAATGG+AGG 0.577881 tig0020424:-4000 None:intergenic
GATGTTGCAGTTGCTAAAGC+TGG 0.582356 tig0020424:+6567 Msa1381210:CDS
GGAGAGTATAGCGCCGAAGC+CGG 0.582657 tig0020424:-4179 None:intergenic
ATCCCCAAAACCTAGGCACT+CGG 0.583255 tig0020424:-6794 None:intergenic
CTCAACCAGCACCATCGCAA+TGG 0.584181 tig0020424:+6172 Msa1381210:CDS
AGGGATTGTCAATCTTAAGA+GGG 0.584931 tig0020424:-6151 None:intergenic
GGTCTCTCTTAGTAATCACT+TGG 0.585616 tig0020424:+6763 Msa1381210:CDS
GGATTGAATGGGGCAAGATG+GGG 0.586530 tig0020424:-3897 None:intergenic
GGAGGATGAGGAGAATGGAG+AGG 0.588369 tig0020424:-3982 None:intergenic
TGAATTTCCCCATGCTAGCA+CGG 0.589057 tig0020424:-6526 None:intergenic
ACAATCCATTTGGCCCACCT+GGG 0.590622 tig0020424:-9987 None:intergenic
GCTAGCATGGGGAAATTCAG+TGG 0.592549 tig0020424:+6530 Msa1381210:CDS
GAAGCCGGTACGGTATTGAC+CGG 0.592685 tig0020424:-4164 None:intergenic
ATTTGGGAATGGCCAATCGG+AGG 0.593231 tig0020424:+4419 Msa1381210:CDS
TATGAACTTAATTTCCACGT+TGG 0.594331 tig0020424:+6699 Msa1381210:CDS
GGAATTACAAAAGCTGAAGT+GGG 0.594798 tig0020424:+9735 Msa1381210:three_prime_UTR
AATTTGTTGCAAGTACATCC+CGG 0.595795 tig0020424:+9534 Msa1381210:three_prime_UTR
AAGATGGGGCGATGTTGTTG+AGG 0.596259 tig0020424:-3883 None:intergenic
CTAGCATGGGGAAATTCAGT+GGG 0.597425 tig0020424:+6531 Msa1381210:CDS
TAAAGCTGGTCATCCGGCAA+TGG 0.598791 tig0020424:+6581 Msa1381210:CDS
TTAGGGAGGAGGAAAACTAT+GGG 0.599981 tig0020424:-6279 None:intergenic
AGCAGAGCATTTGCCTGTGG+TGG 0.606627 tig0020424:+6389 Msa1381210:CDS
GTATAGCGCCGAAGCCGGTA+CGG 0.607381 tig0020424:-4174 None:intergenic
TGAACACTACGGACCACAGA+GGG 0.608035 tig0020424:-6311 None:intergenic
GTATTGACCGGCGCGAAGAG+CGG 0.613005 tig0020424:-4152 None:intergenic
ATGAGTTACATGCATACAAG+AGG 0.615518 tig0020424:-6239 None:intergenic
ATGCTAGCACGGTAAGACCT+AGG 0.615531 tig0020424:-6515 None:intergenic
CCAACAAGCATGTTAAACAT+TGG 0.616677 tig0020424:-6627 None:intergenic
AGACAGAATCCCCAAAACCT+AGG 0.616693 tig0020424:-6801 None:intergenic
AAGAGCAGAGACGAAAGCAC+CGG 0.618004 tig0020424:-4203 None:intergenic
AAAAGCATGAGGAATAGCAA+TGG 0.621608 tig0020424:+9472 Msa1381210:three_prime_UTR
TGCTCTTAGCTAATGTCGTG+TGG 0.623659 tig0020424:-9630 None:intergenic
GATTGAGAAATGGTGAGAAG+CGG 0.626670 tig0020424:-4026 None:intergenic
ACCGAGAGCGAGAAGTGTGA+CGG 0.626907 tig0020424:-4098 None:intergenic
ACATCTCTAACAAACGGCGC+CGG 0.629400 tig0020424:-4271 None:intergenic
GGCGAGAGATGAGAAGACGT+CGG 0.634201 tig0020424:-4131 None:intergenic
ATTCACGAGCTCTCCAGCTG+TGG 0.642513 tig0020424:-6448 None:intergenic
GGAAAATGCAGTGGTAGTTG+AGG 0.644910 tig0020424:-3931 None:intergenic
ATAATTGCTCCCAAGAAGTG+AGG 0.648626 tig0020424:-9767 None:intergenic
TAAAATCTGTTCCATTGCGA+TGG 0.654446 tig0020424:-6183 None:intergenic
TGCCCCATTCAATCCAATGG+CGG 0.655644 tig0020424:+3905 Msa1381210:CDS
GAATAAGAAAGAACTGAGTG+GGG 0.657253 tig0020424:+10060 Msa1381210:three_prime_UTR
GGTCTTACCGTGCTAGCATG+GGG 0.659113 tig0020424:+6519 Msa1381210:CDS
TGCCGCCATTGGATTGAATG+GGG 0.659131 tig0020424:-3907 None:intergenic
GAATTACAAAAGCTGAAGTG+GGG 0.665958 tig0020424:+9736 Msa1381210:three_prime_UTR
AATTACAAAAGCTGAAGTGG+GGG 0.666599 tig0020424:+9737 Msa1381210:three_prime_UTR
TTGAGGAGTGATCTACGAAG+AGG 0.667500 tig0020424:-3866 None:intergenic
TGAGTTACATGCATACAAGA+GGG 0.668778 tig0020424:-6238 None:intergenic
ACTCTGCTTACAGATTTCCA+AGG 0.670878 tig0020424:+6107 Msa1381210:intron
GAGGGAAAAGAGTATTAGGG+AGG 0.671135 tig0020424:-6293 None:intergenic
AATACTTGTTATCTGTACCA+CGG 0.673474 tig0020424:-9368 None:intergenic
ATGAACACTACGGACCACAG+AGG 0.674220 tig0020424:-6312 None:intergenic
GAGTTTGAGGGAAAATGCAG+TGG 0.675343 tig0020424:-3940 None:intergenic
CCAAAACACACTCATAACGA+AGG 0.680133 tig0020424:-6418 None:intergenic
AAAAGCAGAGCATTTGCCTG+TGG 0.684107 tig0020424:+6386 Msa1381210:CDS
CCAGTGTTAGGAACCCAGGT+GGG 0.686416 tig0020424:+9974 Msa1381210:three_prime_UTR
ACTGAGTGGGGTTGTCCAAG+TGG 0.689096 tig0020424:+10072 Msa1381210:three_prime_UTR
GCGCTCTTTGAATGGAACCG+TGG 0.689244 tig0020424:+9351 Msa1381210:intron
GAAGCTTGTCATGAACACTA+CGG 0.689618 tig0020424:-6322 None:intergenic
ATAGAACGCAACGAATCCAA+CGG 0.692109 tig0020424:-4365 None:intergenic
TCGGAGGGAAAAGAGTTCTG+CGG 0.694446 tig0020424:+4435 Msa1381210:CDS
GGAACTATGTGAAAAGCATG+AGG 0.695196 tig0020424:+9461 Msa1381210:three_prime_UTR
ACCAGTGTTAGGAACCCAGG+TGG 0.705970 tig0020424:+9973 Msa1381210:three_prime_UTR
TATGGGTGCTGACTGCTGAG+AGG 0.708788 tig0020424:+10136 Msa1381210:three_prime_UTR
AGCATGGGGAAATTCAGTGG+GGG 0.714129 tig0020424:+6533 Msa1381210:CDS
GTAAGACCTAGGAATGCCTG+CGG 0.717066 tig0020424:-6504 None:intergenic
GAGAGCGAGAAGTGTGACGG+CGG 0.717520 tig0020424:-4095 None:intergenic
TTACTAAGAGAGACCCCATG+AGG 0.728107 tig0020424:-6755 None:intergenic
TAGCATGGGGAAATTCAGTG+GGG 0.756066 tig0020424:+6532 Msa1381210:CDS
ATGCAATCACTATACCAACG+TGG 0.773379 tig0020424:-6713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATTTTAATCATTATT+AGG - tig0020424:5153-5172 None:intergenic 10.0%
!! ATAATTAAATAAAATATTCC+TGG + tig0020424:5976-5995 Msa1381210:intron 10.0%
!! TAATTAAATAAAATATTCCT+GGG + tig0020424:5977-5996 Msa1381210:intron 10.0%
!!! ATTTTATAAACCAATTTTTT+AGG + tig0020424:9950-9969 Msa1381210:three_prime_UTR 10.0%
!!! GAATTTTCTTATATTATTGA+AGG - tig0020424:5014-5033 None:intergenic 15.0%
!! AATTCAATTCAAAAGATTAA+TGG + tig0020424:5165-5184 Msa1381210:intron 15.0%
!!! CTAGAATAATTATTTGTTTT+TGG + tig0020424:7383-7402 Msa1381210:intron 15.0%
!!! AATAATTATTTGTTTTTGGT+TGG + tig0020424:7387-7406 Msa1381210:intron 15.0%
!! TTACTAATGTAATCTTTAAT+TGG + tig0020424:9037-9056 Msa1381210:intron 15.0%
!! AATATGAAATACAATTGAAA+AGG - tig0020424:9200-9219 None:intergenic 15.0%
!! AACTATATAAATTTACATTC+TGG - tig0020424:9306-9325 None:intergenic 15.0%
!!! ATTCAAAAGATTAATGGTTT+TGG + tig0020424:5171-5190 Msa1381210:intron 20.0%
!!! TTTTTGATAATACAGTAATC+TGG + tig0020424:5231-5250 Msa1381210:intron 20.0%
!!! TTTTGATAATACAGTAATCT+GGG + tig0020424:5232-5251 Msa1381210:intron 20.0%
!! GAAGATAATTTGAATTTAGA+AGG + tig0020424:5616-5635 Msa1381210:intron 20.0%
!! TGAAAAGATTAACAAGTTAA+TGG - tig0020424:5683-5702 None:intergenic 20.0%
!!! TAATCTTTTCACACATAATA+TGG + tig0020424:5692-5711 Msa1381210:intron 20.0%
!!! AATCTTTTCACACATAATAT+GGG + tig0020424:5693-5712 Msa1381210:intron 20.0%
!! CAATTACTATCATATCAAAT+GGG - tig0020424:5862-5881 None:intergenic 20.0%
!! ACAATTACTATCATATCAAA+TGG - tig0020424:5863-5882 None:intergenic 20.0%
!!! ATTTTTAAAGTGCTACATTT+TGG - tig0020424:6960-6979 None:intergenic 20.0%
!!! GTTTTCTTCTTAAATAGTTT+GGG - tig0020424:6984-7003 None:intergenic 20.0%
!!! AGTTTTCTTCTTAAATAGTT+TGG - tig0020424:6985-7004 None:intergenic 20.0%
!! AAACTATTTAAGAAGAAAAC+TGG + tig0020424:6984-7003 Msa1381210:three_prime_UTR 20.0%
!! TTATGAAGTATGAATGATTA+TGG + tig0020424:7570-7589 Msa1381210:intron 20.0%
!!! TTTTTCTACTAAATAACTAC+AGG - tig0020424:8013-8032 None:intergenic 20.0%
!! TGTAGTTATTTAGTAGAAAA+AGG + tig0020424:8012-8031 Msa1381210:intron 20.0%
!! TTGTTACATTATCTTACAAA+GGG + tig0020424:8391-8410 Msa1381210:intron 20.0%
!!! ATACCTGTTATTTATTATCT+AGG + tig0020424:8796-8815 Msa1381210:intron 20.0%
!! ATTCCTAGATAATAAATAAC+AGG - tig0020424:8802-8821 None:intergenic 20.0%
!! TTGAATTGATAAACAAGAAA+CGG - tig0020424:8845-8864 None:intergenic 20.0%
!!! ATCTTTAATTGGTTTTCTTT+TGG + tig0020424:9048-9067 Msa1381210:intron 20.0%
!! ATATAAATTTACATTCTGGA+TGG - tig0020424:9302-9321 None:intergenic 20.0%
!!! TAAAACTTTTTAGAAATGTG+TGG - tig0020424:9795-9814 None:intergenic 20.0%
!!! TTGATGGTATATATTTTGTT+TGG + tig0020424:9842-9861 Msa1381210:three_prime_UTR 20.0%
!! GTATTGAGATTATGTTATAT+GGG + tig0020424:10119-10138 Msa1381210:three_prime_UTR 20.0%
!! TTTTGTGTTTTACATGGATT+TGG + tig0020424:4402-4421 Msa1381210:CDS 25.0%
!! TTTGTGTTTTACATGGATTT+GGG + tig0020424:4403-4422 Msa1381210:CDS 25.0%
!! TTTATCTTTTTCTACAGATC+CGG - tig0020424:4503-4522 None:intergenic 25.0%
! GATATAATTCATTCATAGCT+TGG + tig0020424:4786-4805 Msa1381210:intron 25.0%
!! GAAAAATTAGTTTACACTGA+CGG + tig0020424:4847-4866 Msa1381210:intron 25.0%
!! ACCTGATTTTGAATAAAACA+GGG - tig0020424:4891-4910 None:intergenic 25.0%
!! AACCTGATTTTGAATAAAAC+AGG - tig0020424:4892-4911 None:intergenic 25.0%
!!! TACTTATTAGTTAACTTGCT+TGG + tig0020424:4935-4954 Msa1381210:intron 25.0%
!!! TTCTAAAATTGGTTACTCAT+AGG + tig0020424:4961-4980 Msa1381210:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + tig0020424:5268-5287 Msa1381210:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + tig0020424:5410-5429 Msa1381210:intron 25.0%
! GATCTATCAAAAACCATATT+TGG - tig0020424:5450-5469 None:intergenic 25.0%
! TACAACTCATCATACAAAAA+AGG - tig0020424:5556-5575 None:intergenic 25.0%
!! ATCTTTTCACACATAATATG+GGG + tig0020424:5694-5713 Msa1381210:intron 25.0%
!! GTTCTTTTTCCAATACAAAA+TGG - tig0020424:6362-6381 None:intergenic 25.0%
! AAATTAAGTTCATAGGCTTT+AGG - tig0020424:6693-6712 None:intergenic 25.0%
! AAACAATCAACTTGAAAAGA+TGG - tig0020424:6871-6890 None:intergenic 25.0%
! CTTCATAGAAAGATTTAGAT+AGG + tig0020424:6894-6913 Msa1381210:three_prime_UTR 25.0%
!!! CTACATTTTGGTTTTGAATA+TGG - tig0020424:6948-6967 None:intergenic 25.0%
!!! TGTATTTTAGAATGCACTAA+GGG - tig0020424:7195-7214 None:intergenic 25.0%
!!! TTCATTCATGCAATTTGTTT+TGG + tig0020424:7354-7373 Msa1381210:intron 25.0%
! TATTCCAACAAATTTCAGTT+TGG + tig0020424:7456-7475 Msa1381210:three_prime_UTR 25.0%
!!! TTGTGTTTTCATATTTGCTA+TGG + tig0020424:7643-7662 Msa1381210:intron 25.0%
! ACAGTTGAAAATATTGAACA+AGG + tig0020424:7848-7867 Msa1381210:intron 25.0%
! CAGTTGAAAATATTGAACAA+GGG + tig0020424:7849-7868 Msa1381210:intron 25.0%
! TTTCATGTCTCTTAGAATTT+GGG + tig0020424:8037-8056 Msa1381210:intron 25.0%
!! TGATTATTTCTTGAGAAGAT+AGG + tig0020424:8338-8357 Msa1381210:intron 25.0%
! CTTTGTAAGATAATGTAACA+AGG - tig0020424:8392-8411 None:intergenic 25.0%
! CTTGTTACATTATCTTACAA+AGG + tig0020424:8390-8409 Msa1381210:intron 25.0%
! TGTTACATTATCTTACAAAG+GGG + tig0020424:8392-8411 Msa1381210:intron 25.0%
! GATAATAAATAACAGGTATG+TGG - tig0020424:8795-8814 None:intergenic 25.0%
! ATGGAAAAAAGAGATGAAAA+AGG + tig0020424:8925-8944 Msa1381210:three_prime_UTR 25.0%
!! AAAAGGTTTTCAATTCAAGA+AGG + tig0020424:8942-8961 Msa1381210:three_prime_UTR 25.0%
!! TTGGTTGACCTATTTTATTA+TGG + tig0020424:9108-9127 Msa1381210:intron 25.0%
! TTGTTGCTCCATAATAAAAT+AGG - tig0020424:9119-9138 None:intergenic 25.0%
!! TGTATTTTATTGTTCTGTGT+GGG + tig0020424:9659-9678 Msa1381210:three_prime_UTR 25.0%
!!! ATTTCTTTGTCACTTTTACA+CGG + tig0020424:9707-9726 Msa1381210:three_prime_UTR 25.0%
!! AATTGGTTTATAAAATTGCC+CGG - tig0020424:9946-9965 None:intergenic 25.0%
! CGTATTGAGATTATGTTATA+TGG + tig0020424:10118-10137 Msa1381210:three_prime_UTR 25.0%
AGAAGTTGTTGTGATTAAGA+GGG - tig0020424:3846-3865 None:intergenic 30.0%
! TTTTGATGAGGATGTAGAAA+TGG - tig0020424:4006-4025 None:intergenic 30.0%
AACAACACATCTCTAACAAA+CGG - tig0020424:4280-4299 None:intergenic 30.0%
!! TTAGTGCTGAGATTTTTCTA+TGG + tig0020424:4338-4357 Msa1381210:CDS 30.0%
!!! TGTTGGTTTTGTGTTTTACA+TGG + tig0020424:4396-4415 Msa1381210:CDS 30.0%
!! ACTTTCAATTAGCTTTGTGA+TGG + tig0020424:4567-4586 Msa1381210:intron 30.0%
!!! AATTAGCTTTGTGATGGTTT+TGG + tig0020424:4573-4592 Msa1381210:intron 30.0%
GACAATGCATAAAATATGCA+AGG + tig0020424:4648-4667 Msa1381210:intron 30.0%
!!! ACGTATTTTTTCTTTGGTAG+TGG - tig0020424:4693-4712 None:intergenic 30.0%
!!! AAGCACACGTATTTTTTCTT+TGG - tig0020424:4699-4718 None:intergenic 30.0%
!! TCCCTGTTTTATTCAAAATC+AGG + tig0020424:4887-4906 Msa1381210:intron 30.0%
!! TTGCTTGGACTTTCTAAAAT+TGG + tig0020424:4950-4969 Msa1381210:intron 30.0%
CATTGTTTCAAGGTTACATA+TGG - tig0020424:5100-5119 None:intergenic 30.0%
CATATGTAACCTTGAAACAA+TGG + tig0020424:5098-5117 Msa1381210:intron 30.0%
CTCAGTTATAGTAGAAAAGT+TGG + tig0020424:5257-5276 Msa1381210:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - tig0020424:5334-5353 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + tig0020424:5335-5354 Msa1381210:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - tig0020424:5403-5422 None:intergenic 30.0%
! CACCTCTAAATCTTTTCTAA+TGG - tig0020424:5415-5434 None:intergenic 30.0%
! GAATGAGTTGAATCCAAATA+TGG + tig0020424:5434-5453 Msa1381210:intron 30.0%
! TGGTTTTTGATAGATCACTA+TGG + tig0020424:5454-5473 Msa1381210:intron 30.0%
TGTATGATGAGTTGTAGTAA+TGG + tig0020424:5560-5579 Msa1381210:intron 30.0%
CACAATCGTTATTTATGTTG+TGG + tig0020424:5647-5666 Msa1381210:intron 30.0%
! TCTTTTCACACATAATATGG+GGG + tig0020424:5695-5714 Msa1381210:intron 30.0%
ATTTAATGTCTACCGACAAA+GGG - tig0020424:5737-5756 None:intergenic 30.0%
TAAAGTCTACTATCACTAAG+TGG - tig0020424:5912-5931 None:intergenic 30.0%
TTAGTGATAGTAGACTTTAG+TGG + tig0020424:5913-5932 Msa1381210:intron 30.0%
!!! CCTATCTAATTTTTTTACCC+AGG - tig0020424:5997-6016 None:intergenic 30.0%
CCTGGGTAAAAAAATTAGAT+AGG + tig0020424:5994-6013 Msa1381210:intron 30.0%
! ATGGAACAGATTTTATGCAT+CGG + tig0020424:6191-6210 Msa1381210:CDS 30.0%
AAAACTATGGGATGATTAAG+TGG - tig0020424:6270-6289 None:intergenic 30.0%
! TGCATTTCTCCATTTTGTAT+TGG + tig0020424:6350-6369 Msa1381210:CDS 30.0%
AACGTGGAAATTAAGTTCAT+AGG - tig0020424:6700-6719 None:intergenic 30.0%
TATGAACTTAATTTCCACGT+TGG + tig0020424:6699-6718 Msa1381210:CDS 30.0%
!!! AGGCCTCTATATTGTTTTTA+TGG + tig0020424:6827-6846 Msa1381210:CDS 30.0%
CTGCCATAAAAACAATATAG+AGG - tig0020424:6833-6852 None:intergenic 30.0%
!! CAAAACTTGTGTTTTTGAAC+AGG - tig0020424:6920-6939 None:intergenic 30.0%
!!! ATTTTTTGCACAAAACGGAA+CGG - tig0020424:7011-7030 None:intergenic 30.0%
!!! ACTGGATTTTTTGCACAAAA+CGG - tig0020424:7016-7035 None:intergenic 30.0%
AGAGATTGGGTTTCAAATTA+GGG - tig0020424:7122-7141 None:intergenic 30.0%
AAGAGATTGGGTTTCAAATT+AGG - tig0020424:7123-7142 None:intergenic 30.0%
AACGAGATATCAAAGAGATT+GGG - tig0020424:7135-7154 None:intergenic 30.0%
! GCAATGAGTTGGATTTATTA+AGG - tig0020424:7164-7183 None:intergenic 30.0%
!!! GTGTATTTTAGAATGCACTA+AGG - tig0020424:7196-7215 None:intergenic 30.0%
TCTTTCTCTATTGAAGATTG+AGG + tig0020424:7312-7331 Msa1381210:three_prime_UTR 30.0%
AACACCAAACTGAAATTTGT+TGG - tig0020424:7463-7482 None:intergenic 30.0%
AAATGACCTTCAAAACTTCA+TGG - tig0020424:7493-7512 None:intergenic 30.0%
TGCACAAGATAATTGGAATT+TGG - tig0020424:7734-7753 None:intergenic 30.0%
ACAAACTTGCACAAGATAAT+TGG - tig0020424:7741-7760 None:intergenic 30.0%
CTTTCATGTCTCTTAGAATT+TGG + tig0020424:8036-8055 Msa1381210:intron 30.0%
TTAACTCATCCTTACAAAAC+TGG + tig0020424:8066-8085 Msa1381210:intron 30.0%
!!! TTTTAAGCATTGGCTTTAAG+AGG - tig0020424:8295-8314 None:intergenic 30.0%
! CAGGTTTTCATTTTAAGCAT+TGG - tig0020424:8305-8324 None:intergenic 30.0%
!! GAAGATAGGACTTGTTAATT+TGG + tig0020424:8352-8371 Msa1381210:intron 30.0%
!! GACTTGTTAATTTGGAGATA+CGG + tig0020424:8360-8379 Msa1381210:intron 30.0%
TACAGAAGATGAAAGAACAA+AGG - tig0020424:8446-8465 None:intergenic 30.0%
GAAATATACAAGAACGCTTT+GGG - tig0020424:8612-8631 None:intergenic 30.0%
TGAAATATACAAGAACGCTT+TGG - tig0020424:8613-8632 None:intergenic 30.0%
AAACAGAATTGTTTCAGTGA+GGG + tig0020424:8676-8695 Msa1381210:intron 30.0%
AGGAAATCTATAAGTAGCAA+TGG + tig0020424:8705-8724 Msa1381210:intron 30.0%
!! AATACTTGTTATCTGTACCA+CGG - tig0020424:9371-9390 None:intergenic 30.0%
TAACTGTAGACAAGAAATGT+TGG + tig0020424:9440-9459 Msa1381210:three_prime_UTR 30.0%
! CTGTATTTTATTGTTCTGTG+TGG + tig0020424:9658-9677 Msa1381210:three_prime_UTR 30.0%
! GAAGTGAACTTAACTTTTGA+TGG + tig0020424:9826-9845 Msa1381210:three_prime_UTR 30.0%
TGCAATGCAACAATATAGAA+AGG - tig0020424:9905-9924 None:intergenic 30.0%
TTCTATATTGTTGCATTGCA+TGG + tig0020424:9905-9924 Msa1381210:three_prime_UTR 30.0%
TAACACTGGTCCTAAAAAAT+TGG - tig0020424:9963-9982 None:intergenic 30.0%
!!! AATTTTTTAGGACCAGTGTT+AGG + tig0020424:9962-9981 Msa1381210:three_prime_UTR 30.0%
! AGAAGATGATAATGAGAGTG+AGG - tig0020424:3799-3818 None:intergenic 35.0%
GAGAAGTTGTTGTGATTAAG+AGG - tig0020424:3847-3866 None:intergenic 35.0%
TAGTTGTGACGATTGAGAAA+TGG - tig0020424:4039-4058 None:intergenic 35.0%
! GCGTTCTATCTTTTCTTTGT+TGG + tig0020424:4379-4398 Msa1381210:CDS 35.0%
! GTTTTACATGGATTTGGGAA+TGG + tig0020424:4408-4427 Msa1381210:CDS 35.0%
GAAAAAGATAAACACGCTTC+TGG + tig0020424:4511-4530 Msa1381210:intron 35.0%
!! ATTTCGTGGATCTTTTGGTT+CGG + tig0020424:4534-4553 Msa1381210:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + tig0020424:4653-4672 Msa1381210:intron 35.0%
!!! TTTTTTCTTTGGTAGTGGCT+GGG - tig0020424:4688-4707 None:intergenic 35.0%
!!! ATTTTTTCTTTGGTAGTGGC+TGG - tig0020424:4689-4708 None:intergenic 35.0%
ACATCAAATGAATAGCTCCA+AGG - tig0020424:5124-5143 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + tig0020424:5277-5296 Msa1381210:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + tig0020424:5282-5301 Msa1381210:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + tig0020424:5338-5357 Msa1381210:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG - tig0020424:5393-5412 None:intergenic 35.0%
GGTATATGTTTCTCAAGTTC+TGG + tig0020424:5581-5600 Msa1381210:intron 35.0%
GATTTAATGTCTACCGACAA+AGG - tig0020424:5738-5757 None:intergenic 35.0%
TGTCGGTAGACATTAAATCA+AGG + tig0020424:5739-5758 Msa1381210:intron 35.0%
TGATCATAGTAGCATCAACT+AGG - tig0020424:5838-5857 None:intergenic 35.0%
GAAATCTGTAAGCAGAGTAT+GGG - tig0020424:6105-6124 None:intergenic 35.0%
AGGGATTGTCAATCTTAAGA+GGG - tig0020424:6154-6173 None:intergenic 35.0%
TAAAATCTGTTCCATTGCGA+TGG - tig0020424:6186-6205 None:intergenic 35.0%
TGAGTTACATGCATACAAGA+GGG - tig0020424:6241-6260 None:intergenic 35.0%
ATGAGTTACATGCATACAAG+AGG - tig0020424:6242-6261 None:intergenic 35.0%
!! ACAGAGGGAAAAGAGTATTA+GGG - tig0020424:6299-6318 None:intergenic 35.0%
CCAACAAGCATGTTAAACAT+TGG - tig0020424:6630-6649 None:intergenic 35.0%
CCAATGTTTAACATGCTTGT+TGG + tig0020424:6627-6646 Msa1381210:CDS 35.0%
! TTTAACATGCTTGTTGGTCT+TGG + tig0020424:6633-6652 Msa1381210:CDS 35.0%
!!! TTTTTTGCACAAAACGGAAC+GGG - tig0020424:7010-7029 None:intergenic 35.0%
AAAATCCAGTTCTTGATACC+TGG + tig0020424:7026-7045 Msa1381210:three_prime_UTR 35.0%
GAGATTGGGTTTCAAATTAG+GGG - tig0020424:7121-7140 None:intergenic 35.0%
CAACGAGATATCAAAGAGAT+TGG - tig0020424:7136-7155 None:intergenic 35.0%
TTCAAGAGAAGAAAGCTTCA+AGG - tig0020424:7415-7434 None:intergenic 35.0%
ATGATTCTCTCTATGCTTTC+TGG + tig0020424:7597-7616 Msa1381210:intron 35.0%
TGATTCTCTCTATGCTTTCT+GGG + tig0020424:7598-7617 Msa1381210:intron 35.0%
! TGGGTTTTCTTGCACAAATT+TGG + tig0020424:7617-7636 Msa1381210:intron 35.0%
!! TTTTGGTGGTATTAAGCTTG+TGG + tig0020424:7676-7695 Msa1381210:intron 35.0%
!! AGTTTTATGCTGAATCTGCT+TGG + tig0020424:7774-7793 Msa1381210:intron 35.0%
ATGTCTCTTAGAATTTGGGT+TGG + tig0020424:8041-8060 Msa1381210:intron 35.0%
!! CCTTAAATGCCAGTTTTGTA+AGG - tig0020424:8078-8097 None:intergenic 35.0%
CCTTACAAAACTGGCATTTA+AGG + tig0020424:8075-8094 Msa1381210:intron 35.0%
! AAAACTGGCATTTAAGGTGT+GGG + tig0020424:8081-8100 Msa1381210:intron 35.0%
TTTCATTGTGTAGGTGTGAA+GGG - tig0020424:8170-8189 None:intergenic 35.0%
! TTTAAGAGGAAGCGTGTTAA+TGG - tig0020424:8281-8300 None:intergenic 35.0%
TAATCATCATCTCACTCTTC+AGG - tig0020424:8324-8343 None:intergenic 35.0%
!!! AAGGGGCTATTTTGATAACA+TGG + tig0020424:8409-8428 Msa1381210:intron 35.0%
!!! AGGGGCTATTTTGATAACAT+GGG + tig0020424:8410-8429 Msa1381210:intron 35.0%
ATCACCGAAGAAAAATGAGA+AGG - tig0020424:8503-8522 None:intergenic 35.0%
GAAACAGAATTGTTTCAGTG+AGG + tig0020424:8675-8694 Msa1381210:intron 35.0%
TTGTGGCTGTAACAATAGTT+TGG + tig0020424:8743-8762 Msa1381210:intron 35.0%
TAAATAACAGGTATGTGGCA+AGG - tig0020424:8790-8809 None:intergenic 35.0%
ACAAGAAACGGCTAAATCAT+AGG - tig0020424:8833-8852 None:intergenic 35.0%
!!! CTTTTTTCCATTTGATGCTC+TGG - tig0020424:8916-8935 None:intergenic 35.0%
! CTTTCCATAACGATTTTCCT+AGG + tig0020424:9417-9436 Msa1381210:three_prime_UTR 35.0%
GTTACCTAGGAAAATCGTTA+TGG - tig0020424:9424-9443 None:intergenic 35.0%
TTTCTTGTCTACAGTTACCT+AGG - tig0020424:9437-9456 None:intergenic 35.0%
! AAAAGCATGAGGAATAGCAA+TGG + tig0020424:9472-9491 Msa1381210:three_prime_UTR 35.0%
GTCAAATACGCATAAACTTG+TGG - tig0020424:9507-9526 None:intergenic 35.0%
TGTACTTGCAACAAATTTCC+AGG - tig0020424:9531-9550 None:intergenic 35.0%
!! AATTTGTTGCAAGTACATCC+CGG + tig0020424:9534-9553 Msa1381210:three_prime_UTR 35.0%
CCATTACATCATTTGACTAG+TGG - tig0020424:9585-9604 None:intergenic 35.0%
CCACTAGTCAAATGATGTAA+TGG + tig0020424:9582-9601 Msa1381210:three_prime_UTR 35.0%
GGAATTACAAAAGCTGAAGT+GGG + tig0020424:9735-9754 Msa1381210:three_prime_UTR 35.0%
GAATTACAAAAGCTGAAGTG+GGG + tig0020424:9736-9755 Msa1381210:three_prime_UTR 35.0%
AATTACAAAAGCTGAAGTGG+GGG + tig0020424:9737-9756 Msa1381210:three_prime_UTR 35.0%
GGATTATTTCCTCACTTCTT+GGG + tig0020424:9758-9777 Msa1381210:three_prime_UTR 35.0%
TACTTTGACTGCACAAAACT+TGG + tig0020424:9870-9889 Msa1381210:three_prime_UTR 35.0%
! ATGGTTAAGAAGCAGTTTTC+CGG + tig0020424:9924-9943 Msa1381210:three_prime_UTR 35.0%
! TGTTTTGCCAACAATCCATT+TGG - tig0020424:10000-10019 None:intergenic 35.0%
GCTAGAAGGTTAATACTAGA+AGG + tig0020424:10038-10057 Msa1381210:three_prime_UTR 35.0%
AGGAATAAGAAAGAACTGAG+TGG + tig0020424:10058-10077 Msa1381210:three_prime_UTR 35.0%
GGAATAAGAAAGAACTGAGT+GGG + tig0020424:10059-10078 Msa1381210:three_prime_UTR 35.0%
GAATAAGAAAGAACTGAGTG+GGG + tig0020424:10060-10079 Msa1381210:three_prime_UTR 35.0%
! GAGGATTAGTGAGAGTGAAA+TGG - tig0020424:3780-3799 None:intergenic 40.0%
GTTGTTGTGATTAAGAGGGA+TGG - tig0020424:3842-3861 None:intergenic 40.0%
TGATGAGGATGTAGAAATGG+AGG - tig0020424:4003-4022 None:intergenic 40.0%
GATTGAGAAATGGTGAGAAG+CGG - tig0020424:4029-4048 None:intergenic 40.0%
! ATTTTTCTATGGCAAGCCGT+TGG + tig0020424:4349-4368 Msa1381210:CDS 40.0%
ATAGAACGCAACGAATCCAA+CGG - tig0020424:4368-4387 None:intergenic 40.0%
!! TATTACGACGAAAAAGCGTC+CGG + tig0020424:4481-4500 Msa1381210:CDS 40.0%
! TCTGGATTTCGTGGATCTTT+TGG + tig0020424:4529-4548 Msa1381210:intron 40.0%
! TGAAAGCACACGTATACGAA+AGG - tig0020424:4599-4618 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + tig0020424:4654-4673 Msa1381210:intron 40.0%
!!! TTTTTCTTTGGTAGTGGCTG+GGG - tig0020424:4687-4706 None:intergenic 40.0%
!! AGGTTTGCTAAACACTTGCA+CGG + tig0020424:4907-4926 Msa1381210:intron 40.0%
TAACCTTGAAACAATGGCCT+TGG + tig0020424:5104-5123 Msa1381210:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - tig0020424:5325-5344 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + tig0020424:5363-5382 Msa1381210:intron 40.0%
!! ATGTTTCTCAAGTTCTGGAC+AGG + tig0020424:5586-5605 Msa1381210:intron 40.0%
TTTCACACATAATATGGGGG+AGG + tig0020424:5698-5717 Msa1381210:intron 40.0%
GACATTAAATCAAGGACAGC+TGG + tig0020424:5747-5766 Msa1381210:intron 40.0%
GAAATGTTATGCATCGTGTG+TGG + tig0020424:6016-6035 Msa1381210:intron 40.0%
GGAAATCTGTAAGCAGAGTA+TGG - tig0020424:6106-6125 None:intergenic 40.0%
ACTCTGCTTACAGATTTCCA+AGG + tig0020424:6107-6126 Msa1381210:intron 40.0%
CTTACAGATTTCCAAGGCAT+GGG + tig0020424:6113-6132 Msa1381210:intron 40.0%
AATCTTAAGAGGGTTGAGAC+AGG - tig0020424:6144-6163 None:intergenic 40.0%
GAGGGATTGTCAATCTTAAG+AGG - tig0020424:6155-6174 None:intergenic 40.0%
! TAGTGGACAAAGAGCGATAT+TGG - tig0020424:6217-6236 None:intergenic 40.0%
TTAGGGAGGAGGAAAACTAT+GGG - tig0020424:6282-6301 None:intergenic 40.0%
ATTAGGGAGGAGGAAAACTA+TGG - tig0020424:6283-6302 None:intergenic 40.0%
!! CACAGAGGGAAAAGAGTATT+AGG - tig0020424:6300-6319 None:intergenic 40.0%
! CTAATACTCTTTTCCCTCTG+TGG + tig0020424:6298-6317 Msa1381210:CDS 40.0%
GAAGCTTGTCATGAACACTA+CGG - tig0020424:6325-6344 None:intergenic 40.0%
CCAAAACACACTCATAACGA+AGG - tig0020424:6421-6440 None:intergenic 40.0%
! CCTTCGTTATGAGTGTGTTT+TGG + tig0020424:6418-6437 Msa1381210:CDS 40.0%
! TTTTGGATATCTACCACAGC+TGG + tig0020424:6435-6454 Msa1381210:CDS 40.0%
GTGAATTGCCTTGAAGCTTT+AGG + tig0020424:6465-6484 Msa1381210:CDS 40.0%
ATGCAATCACTATACCAACG+TGG - tig0020424:6716-6735 None:intergenic 40.0%
!! TTCCTGCTTTTAAGCCTCAT+GGG + tig0020424:6741-6760 Msa1381210:CDS 40.0%
GGTCTCTCTTAGTAATCACT+TGG + tig0020424:6763-6782 Msa1381210:CDS 40.0%
AGAAACCAGGTATCAAGAAC+TGG - tig0020424:7034-7053 None:intergenic 40.0%
!! TAGTTAGGGTTTTTCAGCTG+TGG - tig0020424:7090-7109 None:intergenic 40.0%
GGTTTCAAATTAGGGGATAG+GGG - tig0020424:7114-7133 None:intergenic 40.0%
GGGTTTCAAATTAGGGGATA+GGG - tig0020424:7115-7134 None:intergenic 40.0%
TGGGTTTCAAATTAGGGGAT+AGG - tig0020424:7116-7135 None:intergenic 40.0%
AGCTTTCTTCTCTTGAAGCT+CGG + tig0020424:7418-7437 Msa1381210:intron 40.0%
!! CACTCTCCATGAAGTTTTGA+AGG + tig0020424:7484-7503 Msa1381210:three_prime_UTR 40.0%
!! TTTTGAAGGTCATTTCCTGC+AGG + tig0020424:7498-7517 Msa1381210:three_prime_UTR 40.0%
!! GCTATGGTGCTAATGAGTTT+TGG + tig0020424:7659-7678 Msa1381210:intron 40.0%
!! ATGGTGCTAATGAGTTTTGG+TGG + tig0020424:7662-7681 Msa1381210:intron 40.0%
CAGAGTCATGCATATGCATA+TGG + tig0020424:7802-7821 Msa1381210:intron 40.0%
AGTCATGCATATGCATATGG+TGG + tig0020424:7805-7824 Msa1381210:intron 40.0%
GTCATGCATATGCATATGGT+GGG + tig0020424:7806-7825 Msa1381210:intron 40.0%
ACATCAGGACATTGGCATTT+AGG + tig0020424:7897-7916 Msa1381210:intron 40.0%
GGACATTGGCATTTAGGAAA+TGG + tig0020424:7903-7922 Msa1381210:intron 40.0%
! CAAAACTGGCATTTAAGGTG+TGG + tig0020424:8080-8099 Msa1381210:intron 40.0%
ATTTAGTCCCACATTGCCTA+GGG - tig0020424:8142-8161 None:intergenic 40.0%
TTCATTGTGTAGGTGTGAAG+GGG - tig0020424:8169-8188 None:intergenic 40.0%
CTTTCATTGTGTAGGTGTGA+AGG - tig0020424:8171-8190 None:intergenic 40.0%
! CACCTACACAATGAAAGTGT+TGG + tig0020424:8174-8193 Msa1381210:intron 40.0%
CTCCAACACTTTCATTGTGT+AGG - tig0020424:8179-8198 None:intergenic 40.0%
!! CTACACAATGAAAGTGTTGG+AGG + tig0020424:8177-8196 Msa1381210:intron 40.0%
GCTGCATAATTACGGCATTT+GGG - tig0020424:8218-8237 None:intergenic 40.0%
AGCTGCATAATTACGGCATT+TGG - tig0020424:8219-8238 None:intergenic 40.0%
TGCCTCTAGCTGCATAATTA+CGG - tig0020424:8226-8245 None:intergenic 40.0%
! GCGTGTTAATGGACATTGTT+GGG - tig0020424:8270-8289 None:intergenic 40.0%
! AGCGTGTTAATGGACATTGT+TGG - tig0020424:8271-8290 None:intergenic 40.0%
!! GTCGCCTTCTCATTTTTCTT+CGG + tig0020424:8496-8515 Msa1381210:intron 40.0%
CTGTTCAGACAGAAGGTTAT+TGG + tig0020424:8544-8563 Msa1381210:intron 40.0%
!! CCATTTTTGACAAAGTGACC+CGG + tig0020424:8633-8652 Msa1381210:intron 40.0%
TATAACTCTTCCATGATGCC+GGG - tig0020424:8654-8673 None:intergenic 40.0%
CTATAACTCTTCCATGATGC+CGG - tig0020424:8655-8674 None:intergenic 40.0%
!! GTAGCAATGGCTTTAAGACA+CGG + tig0020424:8718-8737 Msa1381210:intron 40.0%
GATTGCAATACCTGTCACAT+TGG - tig0020424:8880-8899 None:intergenic 40.0%
! CTTACTACCAGAGCATCAAA+TGG + tig0020424:8906-8925 Msa1381210:three_prime_UTR 40.0%
TTCAATTCAAGAAGGCCTGT+CGG + tig0020424:8950-8969 Msa1381210:three_prime_UTR 40.0%
AAAATAGGTCAACCAACACC+AGG - tig0020424:9104-9123 None:intergenic 40.0%
!!! CTTTTTCAGCGCTCTTTGAA+TGG + tig0020424:9343-9362 Msa1381210:intron 40.0%
! GGAACTATGTGAAAAGCATG+AGG + tig0020424:9461-9480 Msa1381210:three_prime_UTR 40.0%
TGAGGAATAGCAATGGAAAG+TGG + tig0020424:9479-9498 Msa1381210:three_prime_UTR 40.0%
GTTTATGCGTATTTGACACC+TGG + tig0020424:9510-9529 Msa1381210:three_prime_UTR 40.0%
TGGAAACAACCAACAAGAAC+AGG - tig0020424:9565-9584 None:intergenic 40.0%
!! CGACATTAGCTAAGAGCATT+TGG + tig0020424:9635-9654 Msa1381210:three_prime_UTR 40.0%
!!! TCTTTGTCACTTTTACACGG+TGG + tig0020424:9710-9729 Msa1381210:three_prime_UTR 40.0%
CGGAATTACAAAAGCTGAAG+TGG + tig0020424:9734-9753 Msa1381210:three_prime_UTR 40.0%
GGGATTATTTCCTCACTTCT+TGG + tig0020424:9757-9776 Msa1381210:three_prime_UTR 40.0%
ATAATTGCTCCCAAGAAGTG+AGG - tig0020424:9770-9789 None:intergenic 40.0%
! TGGTTAAGAAGCAGTTTTCC+GGG + tig0020424:9925-9944 Msa1381210:three_prime_UTR 40.0%
!! GAGAGGAGAGAGTATTATCA+AGG + tig0020424:10153-10172 Msa1381210:three_prime_UTR 40.0%
GTGATTAAGAGGGATGGAGA+GGG - tig0020424:3836-3855 None:intergenic 45.0%
TGTGATTAAGAGGGATGGAG+AGG - tig0020424:3837-3856 None:intergenic 45.0%
TTGAGGAGTGATCTACGAAG+AGG - tig0020424:3869-3888 None:intergenic 45.0%
TGGATTGAATGGGGCAAGAT+GGG - tig0020424:3901-3920 None:intergenic 45.0%
TTGGATTGAATGGGGCAAGA+TGG - tig0020424:3902-3921 None:intergenic 45.0%
TCTTGCCCCATTCAATCCAA+TGG + tig0020424:3902-3921 Msa1381210:CDS 45.0%
ATGCCGCCATTGGATTGAAT+GGG - tig0020424:3911-3930 None:intergenic 45.0%
GGAAAATGCAGTGGTAGTTG+AGG - tig0020424:3934-3953 None:intergenic 45.0%
GAGTTTGAGGGAAAATGCAG+TGG - tig0020424:3943-3962 None:intergenic 45.0%
TTGAGAGGATGGGAGTTTGA+GGG - tig0020424:3955-3974 None:intergenic 45.0%
ATTGAGAGGATGGGAGTTTG+AGG - tig0020424:3956-3975 None:intergenic 45.0%
GAAATGGAGGATGAGGAGAA+TGG - tig0020424:3990-4009 None:intergenic 45.0%
GGATGTAGAAATGGAGGATG+AGG - tig0020424:3997-4016 None:intergenic 45.0%
CCATACTAGGAGAGAGATTG+AGG - tig0020424:4075-4094 None:intergenic 45.0%
CCTCAATCTCTCTCCTAGTA+TGG + tig0020424:4072-4091 Msa1381210:CDS 45.0%
! TTCGTCTCTGCTCTTGTTGT+CGG + tig0020424:4211-4230 Msa1381210:CDS 45.0%
TGGATTTGGGAATGGCCAAT+CGG + tig0020424:4416-4435 Msa1381210:CDS 45.0%
! AGAACTCTTTTCCCTCCGAT+TGG - tig0020424:4434-4453 None:intergenic 45.0%
AAAGAGTTCTGCGGATCTTG+AGG + tig0020424:4444-4463 Msa1381210:CDS 45.0%
AAGAGTTCTGCGGATCTTGA+GGG + tig0020424:4445-4464 Msa1381210:CDS 45.0%
!!! GGACGCTTTTTCGTCGTAAT+AGG - tig0020424:4482-4501 None:intergenic 45.0%
AAACACGCTTCTGGATTTCG+TGG + tig0020424:4520-4539 Msa1381210:intron 45.0%
!! GGTTTGCTAAACACTTGCAC+GGG + tig0020424:4908-4927 Msa1381210:intron 45.0%
! GATCTAAAACCAAACGCTGC+AGG + tig0020424:5070-5089 Msa1381210:intron 45.0%
TATGGTTAACCTGCAGCGTT+TGG - tig0020424:5082-5101 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG - tig0020424:5324-5343 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + tig0020424:5347-5366 Msa1381210:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + tig0020424:5357-5376 Msa1381210:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0020424:5503-5522 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0020424:5504-5523 None:intergenic 45.0%
TAGCCAGTTGATCCCTTTGT+CGG + tig0020424:5722-5741 Msa1381210:intron 45.0%
GGTCAGTGGTCAACGTAATT+TGG - tig0020424:5817-5836 None:intergenic 45.0%
AGTAGCATCAACTAGGTCAG+TGG - tig0020424:5831-5850 None:intergenic 45.0%
GCTTACAGATTTCCAAGGCA+TGG + tig0020424:6112-6131 Msa1381210:intron 45.0%
!! GGAAAAGAGTATTAGGGAGG+AGG - tig0020424:6293-6312 None:intergenic 45.0%
!! GAGGGAAAAGAGTATTAGGG+AGG - tig0020424:6296-6315 None:intergenic 45.0%
!! AGGCAAATGCTCTGCTTTTG+GGG - tig0020424:6385-6404 None:intergenic 45.0%
!! CAGGCAAATGCTCTGCTTTT+GGG - tig0020424:6386-6405 None:intergenic 45.0%
! ACAGGCAAATGCTCTGCTTT+TGG - tig0020424:6387-6406 None:intergenic 45.0%
! AAAAGCAGAGCATTTGCCTG+TGG + tig0020424:6386-6405 Msa1381210:CDS 45.0%
TGAATTTCCCCATGCTAGCA+CGG - tig0020424:6529-6548 None:intergenic 45.0%
CTAGCATGGGGAAATTCAGT+GGG + tig0020424:6531-6550 Msa1381210:CDS 45.0%
TAGCATGGGGAAATTCAGTG+GGG + tig0020424:6532-6551 Msa1381210:CDS 45.0%
GATGTTGCAGTTGCTAAAGC+TGG + tig0020424:6567-6586 Msa1381210:CDS 45.0%
AGTTGCTAAAGCTGGTCATC+CGG + tig0020424:6575-6594 Msa1381210:CDS 45.0%
!! TGTTGGTCTTGGAACTGCTT+TGG + tig0020424:6644-6663 Msa1381210:CDS 45.0%
!! GTTCCTGCTTTTAAGCCTCA+TGG + tig0020424:6740-6759 Msa1381210:CDS 45.0%
!! TCCTGCTTTTAAGCCTCATG+GGG + tig0020424:6742-6761 Msa1381210:CDS 45.0%
TTACTAAGAGAGACCCCATG+AGG - tig0020424:6758-6777 None:intergenic 45.0%
AAAACCTAGGCACTCGGAAT+CGG - tig0020424:6791-6810 None:intergenic 45.0%
! ATTCCGAGTGCCTAGGTTTT+GGG + tig0020424:6791-6810 Msa1381210:CDS 45.0%
AGACAGAATCCCCAAAACCT+AGG - tig0020424:6804-6823 None:intergenic 45.0%
!! TTTTGGGGATTCTGTCTCGT+AGG + tig0020424:6807-6826 Msa1381210:CDS 45.0%
!! TAGGGGATAGGGGTTAGTTA+GGG - tig0020424:7104-7123 None:intergenic 45.0%
!! TTAGGGGATAGGGGTTAGTT+AGG - tig0020424:7105-7124 None:intergenic 45.0%
! TCACGCACTCTCTGATTTGT+TGG + tig0020424:7526-7545 Msa1381210:intron 45.0%
TGGTGGTATTAAGCTTGTGG+TGG + tig0020424:7679-7698 Msa1381210:intron 45.0%
GGTGGTATTAAGCTTGTGGT+GGG + tig0020424:7680-7699 Msa1381210:intron 45.0%
GTGGTATTAAGCTTGTGGTG+GGG + tig0020424:7681-7700 Msa1381210:intron 45.0%
! TGAGTTGAGTAGCAGACATC+AGG + tig0020424:7882-7901 Msa1381210:intron 45.0%
AGTAGCAGACATCAGGACAT+TGG + tig0020424:7889-7908 Msa1381210:intron 45.0%
ACTACACATGCCATATCCCT+AGG + tig0020424:8123-8142 Msa1381210:intron 45.0%
GATTTAGTCCCACATTGCCT+AGG - tig0020424:8143-8162 None:intergenic 45.0%
TGCCGTAATTATGCAGCTAG+AGG + tig0020424:8221-8240 Msa1381210:intron 45.0%
TTTCTTCGGTGATGTCTGCA+TGG + tig0020424:8510-8529 Msa1381210:intron 45.0%
TTCTTCGGTGATGTCTGCAT+GGG + tig0020424:8511-8530 Msa1381210:intron 45.0%
TGTGAGTCTGTTCAGACAGA+AGG + tig0020424:8537-8556 Msa1381210:intron 45.0%
! CCGGGTCACTTTGTCAAAAA+TGG - tig0020424:8636-8655 None:intergenic 45.0%
CGGCATCATGGAAGAGTTAT+AGG + tig0020424:8653-8672 Msa1381210:intron 45.0%
TGTTTCAGTGAGGGTTGTGA+AGG + tig0020424:8685-8704 Msa1381210:intron 45.0%
!! GGCTTTAAGACACGGTATTG+TGG + tig0020424:8726-8745 Msa1381210:intron 45.0%
TCCTTGTTCTCCAATGTGAC+AGG + tig0020424:8867-8886 Msa1381210:intron 45.0%
ACCTGTCACATTGGAGAACA+AGG - tig0020424:8871-8890 None:intergenic 45.0%
TCAATTCAAGAAGGCCTGTC+GGG + tig0020424:8951-8970 Msa1381210:three_prime_UTR 45.0%
GAGCAGTGCAGGTATAACTT+TGG + tig0020424:9003-9022 Msa1381210:intron 45.0%
TGCTCTTAGCTAATGTCGTG+TGG - tig0020424:9633-9652 None:intergenic 45.0%
!!! TGTCACTTTTACACGGTGGT+CGG + tig0020424:9714-9733 Msa1381210:three_prime_UTR 45.0%
CTCTCAAGCTTAGTGCTAGA+AGG + tig0020424:10024-10043 Msa1381210:three_prime_UTR 45.0%
ATTAAGAGGGATGGAGAGGG+AGG - tig0020424:3833-3852 None:intergenic 50.0%
AAGATGGGGCGATGTTGTTG+AGG - tig0020424:3886-3905 None:intergenic 50.0%
GGATTGAATGGGGCAAGATG+GGG - tig0020424:3900-3919 None:intergenic 50.0%
TGCCCCATTCAATCCAATGG+CGG + tig0020424:3905-3924 Msa1381210:CDS 50.0%
TGCCGCCATTGGATTGAATG+GGG - tig0020424:3910-3929 None:intergenic 50.0%
GATGCCGCCATTGGATTGAA+TGG - tig0020424:3912-3931 None:intergenic 50.0%
ATGAGGAGAATGGAGAGGGA+GGG - tig0020424:3980-3999 None:intergenic 50.0%
GAGGATGAGGAGAATGGAGA+GGG - tig0020424:3984-4003 None:intergenic 50.0%
!! GGTGAGAAGCGGTTTTGATG+AGG - tig0020424:4018-4037 None:intergenic 50.0%
ACACTTCTCGCTCTCGGTAA+CGG + tig0020424:4103-4122 Msa1381210:CDS 50.0%
! AAGAGCAGAGACGAAAGCAC+CGG - tig0020424:4206-4225 None:intergenic 50.0%
! TGCTCCTTTTCCCGTTGATC+CGG + tig0020424:4252-4271 Msa1381210:CDS 50.0%
ACATCTCTAACAAACGGCGC+CGG - tig0020424:4274-4293 None:intergenic 50.0%
ATTTGGGAATGGCCAATCGG+AGG + tig0020424:4419-4438 Msa1381210:CDS 50.0%
TTTGGGAATGGCCAATCGGA+GGG + tig0020424:4420-4439 Msa1381210:CDS 50.0%
TCGGAGGGAAAAGAGTTCTG+CGG + tig0020424:4435-4454 Msa1381210:CDS 50.0%
CAACCAACTGAGCTAAGCTC+AGG - tig0020424:4628-4647 None:intergenic 50.0%
CTGAGCTTAGCTCAGTTGGT+TGG + tig0020424:4626-4645 Msa1381210:intron 50.0%
GCTCCAAGGCCATTGTTTCA+AGG - tig0020424:5110-5129 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0020424:5499-5518 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0020424:5505-5524 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0020424:5502-5521 Msa1381210:intron 50.0%
CTACCGACAAAGGGATCAAC+TGG - tig0020424:5728-5747 None:intergenic 50.0%
AGCAGAGTATGGGATACGTC+AGG - tig0020424:6095-6114 None:intergenic 50.0%
!! ATTGCGATGGTGCTGGTTGA+GGG - tig0020424:6173-6192 None:intergenic 50.0%
CATGCATACAAGAGGGCTAG+TGG - tig0020424:6234-6253 None:intergenic 50.0%
TGAACACTACGGACCACAGA+GGG - tig0020424:6314-6333 None:intergenic 50.0%
ATGAACACTACGGACCACAG+AGG - tig0020424:6315-6334 None:intergenic 50.0%
!! GGCAAATGCTCTGCTTTTGG+GGG - tig0020424:6384-6403 None:intergenic 50.0%
GAAGCGTGCCTAAAGCTTCA+AGG - tig0020424:6476-6495 None:intergenic 50.0%
GTAAGACCTAGGAATGCCTG+CGG - tig0020424:6507-6526 None:intergenic 50.0%
ATGCTAGCACGGTAAGACCT+AGG - tig0020424:6518-6537 None:intergenic 50.0%
TAGGTCTTACCGTGCTAGCA+TGG + tig0020424:6517-6536 Msa1381210:CDS 50.0%
AGGTCTTACCGTGCTAGCAT+GGG + tig0020424:6518-6537 Msa1381210:CDS 50.0%
GCTAGCATGGGGAAATTCAG+TGG + tig0020424:6530-6549 Msa1381210:CDS 50.0%
AGCATGGGGAAATTCAGTGG+GGG + tig0020424:6533-6552 Msa1381210:CDS 50.0%
TAAAGCTGGTCATCCGGCAA+TGG + tig0020424:6581-6600 Msa1381210:CDS 50.0%
! CATTGGTCCAGCAAAGCATC+CGG - tig0020424:6613-6632 None:intergenic 50.0%
ACCCCATGAGGCTTAAAAGC+AGG - tig0020424:6746-6765 None:intergenic 50.0%
AAACCTAGGCACTCGGAATC+GGG - tig0020424:6790-6809 None:intergenic 50.0%
! GATTCCGAGTGCCTAGGTTT+TGG + tig0020424:6790-6809 Msa1381210:CDS 50.0%
! TTCCGAGTGCCTAGGTTTTG+GGG + tig0020424:6792-6811 Msa1381210:CDS 50.0%
ATCCCCAAAACCTAGGCACT+CGG - tig0020424:6797-6816 None:intergenic 50.0%
! TGAGTTGAGTGTGAGAGACG+AGG - tig0020424:7057-7076 None:intergenic 50.0%
TGCCATATCCCTAGGCAATG+TGG + tig0020424:8131-8150 Msa1381210:intron 50.0%
GCCATATCCCTAGGCAATGT+GGG + tig0020424:8132-8151 Msa1381210:intron 50.0%
TCCCACATTGCCTAGGGATA+TGG - tig0020424:8136-8155 None:intergenic 50.0%
TTGTGTAGGTGTGAAGGGGA+TGG - tig0020424:8165-8184 None:intergenic 50.0%
! AGTGTTGGAGGCTGCAATGA+TGG + tig0020424:8189-8208 Msa1381210:intron 50.0%
TGGGAATTCTGCCTTCACTG+TGG - tig0020424:8251-8270 None:intergenic 50.0%
TCAATGACGAAGAGCAGTGC+AGG + tig0020424:8992-9011 Msa1381210:three_prime_UTR 50.0%
CACCAGGTGTAGCGTACATT+GGG - tig0020424:9088-9107 None:intergenic 50.0%
ACACCAGGTGTAGCGTACAT+TGG - tig0020424:9089-9108 None:intergenic 50.0%
ATGTACGCTACACCTGGTGT+TGG + tig0020424:9089-9108 Msa1381210:intron 50.0%
CAACAAGAACAGGTGCTTCC+GGG - tig0020424:9555-9574 None:intergenic 50.0%
CCAACAAGAACAGGTGCTTC+CGG - tig0020424:9556-9575 None:intergenic 50.0%
ACAATCCATTTGGCCCACCT+GGG - tig0020424:9990-10009 None:intergenic 50.0%
AACAATCCATTTGGCCCACC+TGG - tig0020424:9991-10010 None:intergenic 50.0%
!! AGGTGGGCCAAATGGATTGT+TGG + tig0020424:9990-10009 Msa1381210:three_prime_UTR 50.0%
CTTTCTCTCCATCAGCCACT+TGG - tig0020424:10090-10109 None:intergenic 50.0%
GTAGTTGAGGATGCCGCCAT+TGG - tig0020424:3921-3940 None:intergenic 55.0%
AGGGAGGGGATTGAGAGGAT+GGG - tig0020424:3965-3984 None:intergenic 55.0%
TGAGGAGAATGGAGAGGGAG+GGG - tig0020424:3979-3998 None:intergenic 55.0%
GATGAGGAGAATGGAGAGGG+AGG - tig0020424:3981-4000 None:intergenic 55.0%
GGAGGATGAGGAGAATGGAG+AGG - tig0020424:3985-4004 None:intergenic 55.0%
! ACCGAGAGCGAGAAGTGTGA+CGG - tig0020424:4101-4120 None:intergenic 55.0%
GCGAGAGATGAGAAGACGTC+GGG - tig0020424:4133-4152 None:intergenic 55.0%
GGCGAGAGATGAGAAGACGT+CGG - tig0020424:4134-4153 None:intergenic 55.0%
!! GAAGCCGGTACGGTATTGAC+CGG - tig0020424:4167-4186 None:intergenic 55.0%
!! GGTCAATACCGTACCGGCTT+CGG + tig0020424:4166-4185 Msa1381210:CDS 55.0%
! AACAAACGGCGCCGGATCAA+CGG - tig0020424:4266-4285 None:intergenic 55.0%
CCAACTGAGCTAAGCTCAGG+AGG - tig0020424:4625-4644 None:intergenic 55.0%
CCTCCTGAGCTTAGCTCAGT+TGG + tig0020424:4622-4641 Msa1381210:intron 55.0%
! AGTGGCTGGGGTTTGAAACC+CGG - tig0020424:4675-4694 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0020424:5491-5510 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0020424:5490-5509 Msa1381210:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0020424:5491-5510 Msa1381210:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0020424:5497-5516 Msa1381210:intron 55.0%
!! CATTGCGATGGTGCTGGTTG+AGG - tig0020424:6174-6193 None:intergenic 55.0%
CTCAACCAGCACCATCGCAA+TGG + tig0020424:6172-6191 Msa1381210:CDS 55.0%
CTGTTCCATTGCGATGGTGC+TGG - tig0020424:6180-6199 None:intergenic 55.0%
! AGCAGAGCATTTGCCTGTGG+TGG + tig0020424:6389-6408 Msa1381210:CDS 55.0%
GCATTTGCCTGTGGTGGTTG+TGG + tig0020424:6395-6414 Msa1381210:CDS 55.0%
ATTCACGAGCTCTCCAGCTG+TGG - tig0020424:6451-6470 None:intergenic 55.0%
AAACTGCCGCAGGCATTCCT+AGG + tig0020424:6498-6517 Msa1381210:CDS 55.0%
GGTCTTACCGTGCTAGCATG+GGG + tig0020424:6519-6538 Msa1381210:CDS 55.0%
TGGTCATCCGGCAATGGCAA+TGG + tig0020424:6587-6606 Msa1381210:CDS 55.0%
GTGAGAGACGAGGAGAAACC+AGG - tig0020424:7047-7066 None:intergenic 55.0%
GGGAGTCACGAGCAATGAGT+TGG - tig0020424:7175-7194 None:intergenic 55.0%
GAGTGCGTGAAAAGACCTGC+AGG - tig0020424:7516-7535 None:intergenic 55.0%
CTAGAGGCAGACCACAGTGA+AGG + tig0020424:8237-8256 Msa1381210:intron 55.0%
GACAAAGTGACCCGGCATCA+TGG + tig0020424:8641-8660 Msa1381210:intron 55.0%
! AGCTTGTTCTGTTGCCCGAC+AGG - tig0020424:8968-8987 None:intergenic 55.0%
CTCCCAATGTACGCTACACC+TGG + tig0020424:9083-9102 Msa1381210:intron 55.0%
GCGCTCTTTGAATGGAACCG+TGG + tig0020424:9351-9370 Msa1381210:intron 55.0%
!! CCGGAAGCACCTGTTCTTGT+TGG + tig0020424:9553-9572 Msa1381210:three_prime_UTR 55.0%
AGGACCAGTGTTAGGAACCC+AGG + tig0020424:9970-9989 Msa1381210:three_prime_UTR 55.0%
ACCAGTGTTAGGAACCCAGG+TGG + tig0020424:9973-9992 Msa1381210:three_prime_UTR 55.0%
CCAGTGTTAGGAACCCAGGT+GGG + tig0020424:9974-9993 Msa1381210:three_prime_UTR 55.0%
ACTGAGTGGGGTTGTCCAAG+TGG + tig0020424:10072-10091 Msa1381210:three_prime_UTR 55.0%
!! TATGGGTGCTGACTGCTGAG+AGG + tig0020424:10136-10155 Msa1381210:three_prime_UTR 55.0%
GAGGGAGGGGATTGAGAGGA+TGG - tig0020424:3966-3985 None:intergenic 60.0%
TGGAGAGGGAGGGGATTGAG+AGG - tig0020424:3970-3989 None:intergenic 60.0%
AGTGTGACGGCGGCCATACT+AGG - tig0020424:4088-4107 None:intergenic 60.0%
! GAGAGCGAGAAGTGTGACGG+CGG - tig0020424:4098-4117 None:intergenic 60.0%
GCCGTCACACTTCTCGCTCT+CGG + tig0020424:4097-4116 Msa1381210:CDS 60.0%
! GTATTGACCGGCGCGAAGAG+CGG - tig0020424:4155-4174 None:intergenic 60.0%
! GTATAGCGCCGAAGCCGGTA+CGG - tig0020424:4177-4196 None:intergenic 60.0%
! GGAGAGTATAGCGCCGAAGC+CGG - tig0020424:4182-4201 None:intergenic 60.0%
TTCGGCGCTATACTCTCCGC+CGG + tig0020424:4184-4203 Msa1381210:CDS 60.0%
!! AGCAGAGACGAAAGCACCGG+CGG - tig0020424:4203-4222 None:intergenic 60.0%
! ACAAACGGCGCCGGATCAAC+GGG - tig0020424:4265-4284 None:intergenic 60.0%
GACAGGAAGCTCCCATGCCT+TGG - tig0020424:6127-6146 None:intergenic 60.0%
ACGAAGGCCACAACCACCAC+AGG - tig0020424:6405-6424 None:intergenic 60.0%
CACGCTTCTCAAACTGCCGC+AGG + tig0020424:6488-6507 Msa1381210:CDS 60.0%
CATCCGGCAATGGCAATGGC+CGG + tig0020424:6591-6610 Msa1381210:CDS 60.0%
CATCCGGCCATTGCCATTGC+CGG - tig0020424:6597-6616 None:intergenic 60.0%
GCAATGGCCGGATGCTTTGC+TGG + tig0020424:6603-6622 Msa1381210:CDS 60.0%
CCCACCTGGGTTCCTAACAC+TGG - tig0020424:9977-9996 None:intergenic 60.0%
AGGAACCCAGGTGGGCCAAA+TGG + tig0020424:9982-10001 Msa1381210:three_prime_UTR 60.0%
GGGGTTGTCCAAGTGGCTGA+TGG + tig0020424:10079-10098 Msa1381210:three_prime_UTR 60.0%
! CGCGCCGGTCAATACCGTAC+CGG + tig0020424:4160-4179 Msa1381210:CDS 65.0%
! GGCGCCGGATCAACGGGAAA+AGG - tig0020424:4259-4278 None:intergenic 65.0%
GGTCCCGATTCCGAGTGCCT+AGG + tig0020424:6784-6803 Msa1381210:CDS 65.0%
TCTCTCGCCGCTCTTCGCGC+CGG + tig0020424:4145-4164 Msa1381210:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0020424 gene 3764 10225 3764 ID=Msa1381210;Name=Msa1381210
tig0020424 mRNA 3764 10225 3764 ID=Msa1381210-mRNA-1;Parent=Msa1381210;Name=Msa1381210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.8|1|0.5|0.6|5|1548|502
tig0020424 exon 3764 4507 3764 ID=Msa1381210-mRNA-1:exon:7472;Parent=Msa1381210-mRNA-1
tig0020424 exon 6120 7333 6120 ID=Msa1381210-mRNA-1:exon:7473;Parent=Msa1381210-mRNA-1
tig0020424 exon 7420 7519 7420 ID=Msa1381210-mRNA-1:exon:7474;Parent=Msa1381210-mRNA-1
tig0020424 exon 8889 9013 8889 ID=Msa1381210-mRNA-1:exon:7475;Parent=Msa1381210-mRNA-1
tig0020424 exon 9352 10225 9352 ID=Msa1381210-mRNA-1:exon:7476;Parent=Msa1381210-mRNA-1
tig0020424 CDS 3764 4507 3764 ID=Msa1381210-mRNA-1:cds;Parent=Msa1381210-mRNA-1
tig0020424 CDS 6120 6884 6120 ID=Msa1381210-mRNA-1:cds;Parent=Msa1381210-mRNA-1
tig0020424 three_prime_UTR 6885 7333 6885 ID=Msa1381210-mRNA-1:three_prime_utr;Parent=Msa1381210-mRNA-1
tig0020424 three_prime_UTR 7420 7519 7420 ID=Msa1381210-mRNA-1:three_prime_utr;Parent=Msa1381210-mRNA-1
tig0020424 three_prime_UTR 8889 9013 8889 ID=Msa1381210-mRNA-1:three_prime_utr;Parent=Msa1381210-mRNA-1
tig0020424 three_prime_UTR 9352 10225 9352 ID=Msa1381210-mRNA-1:three_prime_utr;Parent=Msa1381210-mRNA-1
Gene Sequence

>Msa1381210

ATGGCTTTGAAAACCATTTCACTCTCACTAATCCTCACTCTCATTATCATCTTCTTCATCACAATTCCTCCCTCTCCATCCCTCTTAATCACAACAACTTCTCCTCTTCGTAGATCACTCCTCAACAACATCGCCCCATCTTGCCCCATTCAATCCAATGGCGGCATCCTCAACTACCACTGCATTTTCCCTCAAACTCCCATCCTCTCAATCCCCTCCCTCTCCATTCTCCTCATCCTCCATTTCTACATCCTCATCAAAACCGCTTCTCACCATTTCTCAATCGTCACAACTAAACTCGCTTCTCACCTCAATCTCTCTCCTAGTATGGCCGCCGTCACACTTCTCGCTCTCGGTAACGGCTCTCCCGACGTCTTCTCATCTCTCGCCGCTCTTCGCGCCGGTCAATACCGTACCGGCTTCGGCGCTATACTCTCCGCCGGTGCTTTCGTCTCTGCTCTTGTTGTCGGCTTTGTCGCGATCTACGCTGCTCCTTTTCCCGTTGATCCGGCGCCGTTTGTTAGAGATGTGTTGTTCTACTTAACTGCTGCTATGTTTCTGTTTTATGTTTATCTTAGTGCTGAGATTTTTCTATGGCAAGCCGTTGGATTCGTTGCGTTCTATCTTTTCTTTGTTGGTTTTGTGTTTTACATGGATTTGGGAATGGCCAATCGGAGGGAAAAGAGTTCTGCGGATCTTGAGGGACAAATTGATTCCTATTACGACGAAAAAGCGTCCGGATCTATTTCCAAGGCATGGGAGCTTCCTGTCTCAACCCTCTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAACAGATTTTATGCATCGGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCATGTAACTCATTCGTGCCACTTAATCATCCCATAGTTTTCCTCCTCCCTAATACTCTTTTCCCTCTGTGGTCCGTAGTGTTCATGACAAGCTTCTCTCTTGCATTTCTCCATTTTGTATTGGAAAAAGAACCCCCAAAAGCAGAGCATTTGCCTGTGGTGGTTGTGGCCTTCGTTATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTCGTGAATTGCCTTGAAGCTTTAGGCACGCTTCTCAAACTGCCGCAGGCATTCCTAGGTCTTACCGTGCTAGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCGGCAATGGCAATGGCCGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACAAATATATATCCTAAAGCCTATGAACTTAATTTCCACGTTGGTATAGTGATTGCATTTGTGTTCCTGCTTTTAAGCCTCATGGGGTCTCTCTTAGTAATCACTTGGTCCCGATTCCGAGTGCCTAGGTTTTGGGGATTCTGTCTCGTAGGCCTCTATATTGTTTTTATGGCAGCGAGTTCAGCAGTAGCCATCTTTTCAAGTTGA
Protein sequence

>Msa1381210

MALKTISLSLILTLIIIFFITIPPSPSLLITTTSPLRRSLLNNIAPSCPIQSNGGILNYHCIFPQTPILSIPSLSILLILHFYILIKTASHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFPVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGMANRREKSSADLEGQIDSYYDEKASGSISKAWELPVSTLLRLTIPQPAPSQWNRFYASANIALCPLALLYACNSFVPLNHPIVFLLPNTLFPLWSVVFMTSFSLAFLHFVLEKEPPKAEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLPQAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIVFMAASSAVAIFSS*