AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131180 MtrunA17_Chr7g0273001 96.718 518 17 0 1 518 1 518 0.0 994
Msa1131180 MtrunA17_Chr6g0460831 30.040 496 304 9 55 515 95 582 1.10e-49 179
Msa1131180 MtrunA17_Chr6g0460821 31.697 489 282 13 37 484 60 537 4.85e-45 166
Msa1131180 MtrunA17_Chr8g0344371 28.411 535 303 12 43 508 115 638 1.71e-42 160
Msa1131180 MtrunA17_Chr7g0254091 30.000 410 236 8 59 457 95 464 2.96e-31 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131180 AT1G08960.1 67.790 534 150 6 7 518 13 546 0.0 652
Msa1131180 AT5G17860.1 32.000 475 290 9 59 508 90 556 8.06e-60 207
Msa1131180 AT5G17860.2 31.223 458 281 10 59 508 90 521 2.16e-52 186
Msa1131180 AT1G54115.1 29.190 531 298 13 47 508 109 630 2.64e-51 185
Msa1131180 AT3G14070.1 28.435 524 303 12 49 507 112 628 4.39e-48 176
Msa1131180 AT5G17850.1 29.730 555 322 17 5 511 14 548 2.78e-44 164
Msa1131180 AT5G17850.2 29.730 555 322 17 5 511 14 548 2.78e-44 164

Find 229 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGATTGGGTTTCAAATT+AGG 0.134965 7_3:-83699481 None:intergenic
GAGAAGTTGTTGTGATTAAG+AGG 0.182955 7_3:-83696205 None:intergenic
CGTATTGAGATTATGTTATA+TGG 0.201229 7_3:+83702480 Msa1131180:three_prime_UTR
ACAGGCAAATGCTCTGCTTT+TGG 0.211093 7_3:-83698745 None:intergenic
GGGATTATTTCCTCACTTCT+TGG 0.228457 7_3:+83702119 Msa1131180:three_prime_UTR
CACAGAGGGAAAAGAGTATT+AGG 0.243083 7_3:-83698658 None:intergenic
CACTATTATCATTGCAATAA+TGG 0.247797 7_3:+83696106 Msa1131180:exon
TCTGGATTTCGTGGATCTTT+TGG 0.249144 7_3:+83696890 Msa1131180:CDS
GATTCCGAGTGCCTAGGTTT+TGG 0.249551 7_3:+83699151 Msa1131180:CDS
TTAGGGGATAGGGGTTAGTT+AGG 0.255630 7_3:-83699463 None:intergenic
AGAGATTGGGTTTCAAATTA+GGG 0.264021 7_3:-83699480 None:intergenic
GCAATGAGTTGGATTTATTA+AGG 0.281711 7_3:-83699522 None:intergenic
AAATTAAGTTCATAGGCTTT+AGG 0.315192 7_3:-83699051 None:intergenic
ATTAGGGAGGAGGAAAACTA+TGG 0.320350 7_3:-83698641 None:intergenic
TTCGTCTCTGCTCTTGTTGT+CGG 0.331098 7_3:+83696572 Msa1131180:CDS
GATGAGGAGAATGGAGAGGG+AGG 0.338258 7_3:-83696339 None:intergenic
GAGGGAGGGGATTGAGAGGA+TGG 0.342271 7_3:-83696324 None:intergenic
CCGGAAGCACCTGTTCTTGT+TGG 0.345802 7_3:+83701915 Msa1131180:three_prime_UTR
GTGAATTGCCTTGAAGCTTT+AGG 0.347493 7_3:+83698826 Msa1131180:CDS
CCTTCGTTATGAGTGTGTTT+TGG 0.348369 7_3:+83698779 Msa1131180:CDS
CAACGAGATATCAAAGAGAT+TGG 0.350248 7_3:-83699494 None:intergenic
GGATTATTTCCTCACTTCTT+GGG 0.352175 7_3:+83702120 Msa1131180:three_prime_UTR
CATCCGGCCATTGCCATTGC+CGG 0.357339 7_3:-83698955 None:intergenic
GCAATGGCCGGATGCTTTGC+TGG 0.358095 7_3:+83698964 Msa1131180:CDS
AACAATCCATTTGGCCCACC+TGG 0.365523 7_3:-83702350 None:intergenic
TGTTGGTCTTGGAACTGCTT+TGG 0.368704 7_3:+83699005 Msa1131180:CDS
CCAACAAGAACAGGTGCTTC+CGG 0.371746 7_3:-83701915 None:intergenic
TACTTTGACTGCACAAAACT+TGG 0.387919 7_3:+83702232 Msa1131180:three_prime_UTR
CCTCAATCTCTCTCCTAGTA+TGG 0.388430 7_3:+83696433 Msa1131180:CDS
CGACATTAGCTAAGAGCATT+TGG 0.389034 7_3:+83701997 Msa1131180:three_prime_UTR
CTTCATAGAAAGATTTAGAT+AGG 0.389924 7_3:+83699255 Msa1131180:three_prime_UTR
GGTCAATACCGTACCGGCTT+CGG 0.391101 7_3:+83696527 Msa1131180:CDS
TTCTATATTGTTGCATTGCA+TGG 0.391207 7_3:+83702267 Msa1131180:three_prime_UTR
AAACTATTTAAGAAGAAAAC+TGG 0.396532 7_3:+83699345 Msa1131180:three_prime_UTR
TTTAACATGCTTGTTGGTCT+TGG 0.397900 7_3:+83698994 Msa1131180:CDS
CTCTCAAGCTTAGTGCTAGA+AGG 0.399250 7_3:+83702386 Msa1131180:three_prime_UTR
TGAGGAGAATGGAGAGGGAG+GGG 0.401522 7_3:-83696337 None:intergenic
CAACAAGAACAGGTGCTTCC+GGG 0.405795 7_3:-83701914 None:intergenic
AAAACCTAGGCACTCGGAAT+CGG 0.406998 7_3:-83699149 None:intergenic
GAGGATTAGTGAGAGTGAAA+TGG 0.411408 7_3:-83696138 None:intergenic
TAGTGGACAAAGAGCGATAT+TGG 0.413049 7_3:-83698575 None:intergenic
ATTGAGAGGATGGGAGTTTG+AGG 0.414253 7_3:-83696314 None:intergenic
AGCTTGTTCTGTTGCCCGAC+AGG 0.414924 7_3:-83701327 None:intergenic
GGGTTTCAAATTAGGGGATA+GGG 0.416477 7_3:-83699473 None:intergenic
GAGGGATTGTCAATCTTAAG+AGG 0.419753 7_3:-83698513 None:intergenic
CATTGCGATGGTGCTGGTTG+AGG 0.420449 7_3:-83698532 None:intergenic
TGTACTTGCAACAAATTTCC+AGG 0.422420 7_3:-83701890 None:intergenic
TGGATTGAATGGGGCAAGAT+GGG 0.423000 7_3:-83696259 None:intergenic
ACAAACGGCGCCGGATCAAC+GGG 0.425874 7_3:-83696623 None:intergenic
GTTACCTAGGAAAATCGTTA+TGG 0.427493 7_3:-83701783 None:intergenic
TAGGGGATAGGGGTTAGTTA+GGG 0.431453 7_3:-83699462 None:intergenic
CGGAATTACAAAAGCTGAAG+TGG 0.438591 7_3:+83702096 Msa1131180:three_prime_UTR
GCTAGAAGGTTAATACTAGA+AGG 0.445809 7_3:+83702400 Msa1131180:three_prime_UTR
TGGGTTTCAAATTAGGGGAT+AGG 0.449743 7_3:-83699474 None:intergenic
TGGAGAGGGAGGGGATTGAG+AGG 0.453858 7_3:-83696328 None:intergenic
GCATTTGCCTGTGGTGGTTG+TGG 0.453910 7_3:+83698756 Msa1131180:CDS
GATGCCGCCATTGGATTGAA+TGG 0.456465 7_3:-83696270 None:intergenic
AACGAGATATCAAAGAGATT+GGG 0.460124 7_3:-83699493 None:intergenic
GGATGTAGAAATGGAGGATG+AGG 0.460612 7_3:-83696355 None:intergenic
AAACCTAGGCACTCGGAATC+GGG 0.460770 7_3:-83699148 None:intergenic
CTTTCTCTCCATCAGCCACT+TGG 0.461429 7_3:-83702449 None:intergenic
TTGGATTGAATGGGGCAAGA+TGG 0.462224 7_3:-83696260 None:intergenic
GGAATAAGAAAGAACTGAGT+GGG 0.463568 7_3:+83702421 Msa1131180:three_prime_UTR
TTGAATTGATAAACAAGAAA+CGG 0.464111 7_3:-83701204 None:intergenic
AGAAACCAGGTATCAAGAAC+TGG 0.465897 7_3:-83699392 None:intergenic
ATGCCGCCATTGGATTGAAT+GGG 0.469388 7_3:-83696269 None:intergenic
AAACAATCAACTTGAAAAGA+TGG 0.469803 7_3:-83699229 None:intergenic
CCAATGTTTAACATGCTTGT+TGG 0.469958 7_3:+83698988 Msa1131180:CDS
TTGAGAGGATGGGAGTTTGA+GGG 0.470188 7_3:-83696313 None:intergenic
TCAATTCAAGAAGGCCTGTC+GGG 0.472852 7_3:+83701313 Msa1131180:three_prime_UTR
ACGAAGGCCACAACCACCAC+AGG 0.474486 7_3:-83698763 None:intergenic
ATTGCGATGGTGCTGGTTGA+GGG 0.474576 7_3:-83698531 None:intergenic
GAAGCGTGCCTAAAGCTTCA+AGG 0.475284 7_3:-83698834 None:intergenic
TAGGTCTTACCGTGCTAGCA+TGG 0.482485 7_3:+83698878 Msa1131180:CDS
TGGAAACAACCAACAAGAAC+AGG 0.482886 7_3:-83701924 None:intergenic
CCACTAGTCAAATGATGTAA+TGG 0.483396 7_3:+83701944 Msa1131180:three_prime_UTR
GTTGTTGTGATTAAGAGGGA+TGG 0.483470 7_3:-83696200 None:intergenic
GACAGGAAGCTCCCATGCCT+TGG 0.483478 7_3:-83698485 None:intergenic
GAAAGAACGCGGAAAGGAGA+TGG 0.483997 7_3:+83695998 None:intergenic
AAACTGCCGCAGGCATTCCT+AGG 0.484727 7_3:+83698859 Msa1131180:CDS
TCCTTGTTCTCCAATGTGAC+AGG 0.489100 7_3:+83701229 Msa1131180:three_prime_UTR
GGCGCCGGATCAACGGGAAA+AGG 0.489382 7_3:-83696617 None:intergenic
CCATTACATCATTTGACTAG+TGG 0.490989 7_3:-83701944 None:intergenic
AATTGGTTTATAAAATTGCC+CGG 0.491181 7_3:-83702305 None:intergenic
AACGTGGAAATTAAGTTCAT+AGG 0.491726 7_3:-83699058 None:intergenic
GCGAGAGATGAGAAGACGTC+GGG 0.494583 7_3:-83696491 None:intergenic
AGGAACCCAGGTGGGCCAAA+TGG 0.494754 7_3:+83702344 Msa1131180:three_prime_UTR
CACGCTTCTCAAACTGCCGC+AGG 0.495555 7_3:+83698849 Msa1131180:CDS
GAAATGGAGGATGAGGAGAA+TGG 0.496656 7_3:-83696348 None:intergenic
GAGGATGAGGAGAATGGAGA+GGG 0.497270 7_3:-83696342 None:intergenic
ACAGAGGGAAAAGAGTATTA+GGG 0.497292 7_3:-83698657 None:intergenic
AAAATCCAGTTCTTGATACC+TGG 0.497752 7_3:+83699387 Msa1131180:three_prime_UTR
TCTTTCTCTATTGAAGATTG+AGG 0.498027 7_3:+83699673 Msa1131180:three_prime_UTR
TAGTTGTGACGATTGAGAAA+TGG 0.500180 7_3:-83696397 None:intergenic
AAAGAACGCGGAAAGGAGAT+GGG 0.500583 7_3:+83695999 None:intergenic
GGAAAAGAGTATTAGGGAGG+AGG 0.503216 7_3:-83698651 None:intergenic
GTGAGAGACGAGGAGAAACC+AGG 0.503320 7_3:-83699405 None:intergenic
CTTACTACCAGAGCATCAAA+TGG 0.503841 7_3:+83701268 Msa1131180:three_prime_UTR
AGAAGTTGTTGTGATTAAGA+GGG 0.504857 7_3:-83696204 None:intergenic
GCTTACAGATTTCCAAGGCA+TGG 0.505102 7_3:+83698473 Msa1131180:intron
AACAAACGGCGCCGGATCAA+CGG 0.505525 7_3:-83696624 None:intergenic
GTAGTTGAGGATGCCGCCAT+TGG 0.505638 7_3:-83696279 None:intergenic
AGTTGCTAAAGCTGGTCATC+CGG 0.505727 7_3:+83698936 Msa1131180:CDS
GCCGTCACACTTCTCGCTCT+CGG 0.506649 7_3:+83696458 Msa1131180:CDS
TGCAATGCAACAATATAGAA+AGG 0.507983 7_3:-83702264 None:intergenic
AGGTGGGCCAAATGGATTGT+TGG 0.510861 7_3:+83702352 Msa1131180:three_prime_UTR
GTGATTAAGAGGGATGGAGA+GGG 0.514627 7_3:-83696194 None:intergenic
TGGTCATCCGGCAATGGCAA+TGG 0.515868 7_3:+83698948 Msa1131180:CDS
CTGTTCCATTGCGATGGTGC+TGG 0.516010 7_3:-83698538 None:intergenic
CCATACTAGGAGAGAGATTG+AGG 0.516197 7_3:-83696433 None:intergenic
AAGAGTTCTGCGGATCTTGA+GGG 0.516492 7_3:+83696806 Msa1131180:CDS
AAAGAGTTCTGCGGATCTTG+AGG 0.517795 7_3:+83696805 Msa1131180:CDS
ATTAAGAGGGATGGAGAGGG+AGG 0.519227 7_3:-83696191 None:intergenic
AGTGTGACGGCGGCCATACT+AGG 0.520260 7_3:-83696446 None:intergenic
GTATTGAGATTATGTTATAT+GGG 0.521674 7_3:+83702481 Msa1131180:three_prime_UTR
ATGAGGAGAATGGAGAGGGA+GGG 0.521792 7_3:-83696338 None:intergenic
AAAACTATGGGATGATTAAG+TGG 0.522490 7_3:-83698628 None:intergenic
AACAACACATCTCTAACAAA+CGG 0.524091 7_3:-83696638 None:intergenic
TTTGGGAATGGCCAATCGGA+GGG 0.524305 7_3:+83696781 Msa1131180:CDS
AAACACGCTTCTGGATTTCG+TGG 0.524455 7_3:+83696881 Msa1131180:CDS
CATTGGTCCAGCAAAGCATC+CGG 0.524643 7_3:-83698971 None:intergenic
AGACAATAGCATAGCAGAAG+AGG 0.528204 7_3:-83696024 None:intergenic
GGTTTCAAATTAGGGGATAG+GGG 0.533769 7_3:-83699472 None:intergenic
AGCAGAGACGAAAGCACCGG+CGG 0.534152 7_3:-83696561 None:intergenic
ACCTGTCACATTGGAGAACA+AGG 0.535703 7_3:-83701230 None:intergenic
GAGAGGAGAGAGTATTATCA+AGG 0.536518 7_3:+83702515 Msa1131180:three_prime_UTR
CATCCGGCAATGGCAATGGC+CGG 0.540312 7_3:+83698952 Msa1131180:CDS
CTTACAGATTTCCAAGGCAT+GGG 0.541325 7_3:+83698474 Msa1131180:intron
TCAATGACGAAGAGCAGTGC+AGG 0.542295 7_3:+83701354 Msa1131180:three_prime_UTR
ACCCCATGAGGCTTAAAAGC+AGG 0.545048 7_3:-83699104 None:intergenic
AGGTCTTACCGTGCTAGCAT+GGG 0.548021 7_3:+83698879 Msa1131180:CDS
GGGAGTCACGAGCAATGAGT+TGG 0.549283 7_3:-83699533 None:intergenic
AGGGAGGGGATTGAGAGGAT+GGG 0.549440 7_3:-83696323 None:intergenic
AGGACCAGTGTTAGGAACCC+AGG 0.550048 7_3:+83702332 Msa1131180:three_prime_UTR
GTTTATGCGTATTTGACACC+TGG 0.550987 7_3:+83701872 Msa1131180:three_prime_UTR
CGCGCCGGTCAATACCGTAC+CGG 0.551721 7_3:+83696521 Msa1131180:CDS
GGTCCCGATTCCGAGTGCCT+AGG 0.552227 7_3:+83699145 Msa1131180:CDS
TGAGTTGAGTGTGAGAGACG+AGG 0.553112 7_3:-83699415 None:intergenic
TTTCTTGTCTACAGTTACCT+AGG 0.553185 7_3:-83701796 None:intergenic
AATCTTAAGAGGGTTGAGAC+AGG 0.554164 7_3:-83698502 None:intergenic
CCCACCTGGGTTCCTAACAC+TGG 0.554568 7_3:-83702336 None:intergenic
GGGGTTGTCCAAGTGGCTGA+TGG 0.555275 7_3:+83702441 Msa1131180:three_prime_UTR
TAACTGTAGACAAGAAATGT+TGG 0.558214 7_3:+83701802 Msa1131180:three_prime_UTR
TTCGGCGCTATACTCTCCGC+CGG 0.558460 7_3:+83696545 Msa1131180:CDS
TCTCTCGCCGCTCTTCGCGC+CGG 0.558505 7_3:+83696506 Msa1131180:CDS
GTCAAATACGCATAAACTTG+TGG 0.560739 7_3:-83701866 None:intergenic
TTCAATTCAAGAAGGCCTGT+CGG 0.561563 7_3:+83701312 Msa1131180:three_prime_UTR
GAGATTGGGTTTCAAATTAG+GGG 0.562024 7_3:-83699479 None:intergenic
CATGCATACAAGAGGGCTAG+TGG 0.564229 7_3:-83698592 None:intergenic
AGAAGATGATAATGAGAGTG+AGG 0.566303 7_3:-83696157 None:intergenic
ACACTTCTCGCTCTCGGTAA+CGG 0.567195 7_3:+83696464 Msa1131180:CDS
AGGAATAAGAAAGAACTGAG+TGG 0.567355 7_3:+83702420 Msa1131180:three_prime_UTR
TGAGGAATAGCAATGGAAAG+TGG 0.567770 7_3:+83701841 Msa1131180:three_prime_UTR
TGGATTTGGGAATGGCCAAT+CGG 0.570540 7_3:+83696777 Msa1131180:CDS
TGTGATTAAGAGGGATGGAG+AGG 0.573624 7_3:-83696195 None:intergenic
TCTTGCCCCATTCAATCCAA+TGG 0.576988 7_3:+83696263 Msa1131180:CDS
TGATGAGGATGTAGAAATGG+AGG 0.577881 7_3:-83696361 None:intergenic
GATGTTGCAGTTGCTAAAGC+TGG 0.582356 7_3:+83698928 Msa1131180:CDS
GGAGAGTATAGCGCCGAAGC+CGG 0.582657 7_3:-83696540 None:intergenic
ATCCCCAAAACCTAGGCACT+CGG 0.583255 7_3:-83699155 None:intergenic
CTCAACCAGCACCATCGCAA+TGG 0.584181 7_3:+83698533 Msa1131180:CDS
AGGGATTGTCAATCTTAAGA+GGG 0.584931 7_3:-83698512 None:intergenic
GGTCTCTCTTAGTAATCACT+TGG 0.585616 7_3:+83699124 Msa1131180:CDS
GGATTGAATGGGGCAAGATG+GGG 0.586530 7_3:-83696258 None:intergenic
GGAGGATGAGGAGAATGGAG+AGG 0.588369 7_3:-83696343 None:intergenic
TGAATTTCCCCATGCTAGCA+CGG 0.589057 7_3:-83698887 None:intergenic
GATTGCAATACCTGTCACAT+TGG 0.590216 7_3:-83701239 None:intergenic
ACAATCCATTTGGCCCACCT+GGG 0.590622 7_3:-83702349 None:intergenic
GCTAGCATGGGGAAATTCAG+TGG 0.592549 7_3:+83698891 Msa1131180:CDS
GAAGCCGGTACGGTATTGAC+CGG 0.592685 7_3:-83696525 None:intergenic
ATTTGGGAATGGCCAATCGG+AGG 0.593231 7_3:+83696780 Msa1131180:CDS
TATGAACTTAATTTCCACGT+TGG 0.594331 7_3:+83699060 Msa1131180:CDS
GGAATTACAAAAGCTGAAGT+GGG 0.594798 7_3:+83702097 Msa1131180:three_prime_UTR
AATTTGTTGCAAGTACATCC+CGG 0.595795 7_3:+83701896 Msa1131180:three_prime_UTR
AAGATGGGGCGATGTTGTTG+AGG 0.596259 7_3:-83696244 None:intergenic
CTAGCATGGGGAAATTCAGT+GGG 0.597425 7_3:+83698892 Msa1131180:CDS
TAAAGCTGGTCATCCGGCAA+TGG 0.598791 7_3:+83698942 Msa1131180:CDS
TTAGGGAGGAGGAAAACTAT+GGG 0.599981 7_3:-83698640 None:intergenic
AGCAGAGCATTTGCCTGTGG+TGG 0.606627 7_3:+83698750 Msa1131180:CDS
GTATAGCGCCGAAGCCGGTA+CGG 0.607381 7_3:-83696535 None:intergenic
TGAACACTACGGACCACAGA+GGG 0.608035 7_3:-83698672 None:intergenic
GTATTGACCGGCGCGAAGAG+CGG 0.613005 7_3:-83696513 None:intergenic
ATGAGTTACATGCATACAAG+AGG 0.615518 7_3:-83698600 None:intergenic
ATGCTAGCACGGTAAGACCT+AGG 0.615531 7_3:-83698876 None:intergenic
CCAACAAGCATGTTAAACAT+TGG 0.616677 7_3:-83698988 None:intergenic
AGACAGAATCCCCAAAACCT+AGG 0.616693 7_3:-83699162 None:intergenic
AAGAGCAGAGACGAAAGCAC+CGG 0.618004 7_3:-83696564 None:intergenic
AAAAGCATGAGGAATAGCAA+TGG 0.621608 7_3:+83701834 Msa1131180:three_prime_UTR
TGCTCTTAGCTAATGTCGTG+TGG 0.623659 7_3:-83701992 None:intergenic
GATTGAGAAATGGTGAGAAG+CGG 0.626670 7_3:-83696387 None:intergenic
ACCGAGAGCGAGAAGTGTGA+CGG 0.626907 7_3:-83696459 None:intergenic
ACATCTCTAACAAACGGCGC+CGG 0.629400 7_3:-83696632 None:intergenic
GGCGAGAGATGAGAAGACGT+CGG 0.634201 7_3:-83696492 None:intergenic
AAGTGGGAAAGAACGCGGAA+AGG 0.636423 7_3:+83695992 None:intergenic
ATTCACGAGCTCTCCAGCTG+TGG 0.642513 7_3:-83698809 None:intergenic
GGAAAATGCAGTGGTAGTTG+AGG 0.644910 7_3:-83696292 None:intergenic
AAGAACGCGGAAAGGAGATG+GGG 0.645859 7_3:+83696000 None:intergenic
ATAATTGCTCCCAAGAAGTG+AGG 0.648626 7_3:-83702129 None:intergenic
TAAAATCTGTTCCATTGCGA+TGG 0.654446 7_3:-83698544 None:intergenic
TGCCCCATTCAATCCAATGG+CGG 0.655644 7_3:+83696266 Msa1131180:CDS
GAATAAGAAAGAACTGAGTG+GGG 0.657253 7_3:+83702422 Msa1131180:three_prime_UTR
GGTCTTACCGTGCTAGCATG+GGG 0.659113 7_3:+83698880 Msa1131180:CDS
TGCCGCCATTGGATTGAATG+GGG 0.659131 7_3:-83696268 None:intergenic
GAATTACAAAAGCTGAAGTG+GGG 0.665958 7_3:+83702098 Msa1131180:three_prime_UTR
AATTACAAAAGCTGAAGTGG+GGG 0.666599 7_3:+83702099 Msa1131180:three_prime_UTR
TTGAGGAGTGATCTACGAAG+AGG 0.667500 7_3:-83696227 None:intergenic
TGAGTTACATGCATACAAGA+GGG 0.668778 7_3:-83698599 None:intergenic
ACTCTGCTTACAGATTTCCA+AGG 0.670878 7_3:+83698468 Msa1131180:intron
GAGGGAAAAGAGTATTAGGG+AGG 0.671135 7_3:-83698654 None:intergenic
AATACTTGTTATCTGTACCA+CGG 0.673474 7_3:-83701730 None:intergenic
ATGAACACTACGGACCACAG+AGG 0.674220 7_3:-83698673 None:intergenic
GAGTTTGAGGGAAAATGCAG+TGG 0.675343 7_3:-83696301 None:intergenic
CCAAAACACACTCATAACGA+AGG 0.680133 7_3:-83698779 None:intergenic
AAAAGCAGAGCATTTGCCTG+TGG 0.684107 7_3:+83698747 Msa1131180:CDS
CCAGTGTTAGGAACCCAGGT+GGG 0.686416 7_3:+83702336 Msa1131180:three_prime_UTR
ACTGAGTGGGGTTGTCCAAG+TGG 0.689096 7_3:+83702434 Msa1131180:three_prime_UTR
GCGCTCTTTGAATGGAACCG+TGG 0.689244 7_3:+83701713 Msa1131180:intron
GAAGCTTGTCATGAACACTA+CGG 0.689618 7_3:-83698683 None:intergenic
ATAGAACGCAACGAATCCAA+CGG 0.692109 7_3:-83696726 None:intergenic
TCGGAGGGAAAAGAGTTCTG+CGG 0.694446 7_3:+83696796 Msa1131180:CDS
GGAACTATGTGAAAAGCATG+AGG 0.695196 7_3:+83701823 Msa1131180:three_prime_UTR
ACCAGTGTTAGGAACCCAGG+TGG 0.705970 7_3:+83702335 Msa1131180:three_prime_UTR
TATGGGTGCTGACTGCTGAG+AGG 0.708788 7_3:+83702498 Msa1131180:three_prime_UTR
AGCATGGGGAAATTCAGTGG+GGG 0.714129 7_3:+83698894 Msa1131180:CDS
GTAAGACCTAGGAATGCCTG+CGG 0.717066 7_3:-83698865 None:intergenic
GAGAGCGAGAAGTGTGACGG+CGG 0.717520 7_3:-83696456 None:intergenic
TTACTAAGAGAGACCCCATG+AGG 0.728107 7_3:-83699116 None:intergenic
TAGCATGGGGAAATTCAGTG+GGG 0.756066 7_3:+83698893 Msa1131180:CDS
ATGCAATCACTATACCAACG+TGG 0.773379 7_3:-83699074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATTTTAATCATTATT+AGG - chr7_3:83697514-83697533 None:intergenic 10.0%
!! ATAATTAAATAAAATATTCC+TGG + chr7_3:83698337-83698356 Msa1131180:intron 10.0%
!! TAATTAAATAAAATATTCCT+GGG + chr7_3:83698338-83698357 Msa1131180:intron 10.0%
!!! ATTTTATAAACCAATTTTTT+AGG + chr7_3:83702312-83702331 Msa1131180:three_prime_UTR 10.0%
!!! GAATTTTCTTATATTATTGA+AGG - chr7_3:83697375-83697394 None:intergenic 15.0%
!! AATTCAATTCAAAAGATTAA+TGG + chr7_3:83697526-83697545 Msa1131180:intron 15.0%
!!! CTAGAATAATTATTTGTTTT+TGG + chr7_3:83699744-83699763 Msa1131180:intron 15.0%
!!! AATAATTATTTGTTTTTGGT+TGG + chr7_3:83699748-83699767 Msa1131180:intron 15.0%
!! TTACTAATGTAATCTTTAAT+TGG + chr7_3:83701399-83701418 Msa1131180:intron 15.0%
!! AATATGAAATACAATTGAAA+AGG - chr7_3:83701562-83701581 None:intergenic 15.0%
!! AACTATATAAATTTACATTC+TGG - chr7_3:83701668-83701687 None:intergenic 15.0%
!!! ATTCAAAAGATTAATGGTTT+TGG + chr7_3:83697532-83697551 Msa1131180:intron 20.0%
!!! TTTTTGATAATACAGTAATC+TGG + chr7_3:83697592-83697611 Msa1131180:intron 20.0%
!!! TTTTGATAATACAGTAATCT+GGG + chr7_3:83697593-83697612 Msa1131180:intron 20.0%
!! GAAGATAATTTGAATTTAGA+AGG + chr7_3:83697977-83697996 Msa1131180:intron 20.0%
!! TGAAAAGATTAACAAGTTAA+TGG - chr7_3:83698044-83698063 None:intergenic 20.0%
!!! TAATCTTTTCACACATAATA+TGG + chr7_3:83698053-83698072 Msa1131180:intron 20.0%
!!! AATCTTTTCACACATAATAT+GGG + chr7_3:83698054-83698073 Msa1131180:intron 20.0%
!! CAATTACTATCATATCAAAT+GGG - chr7_3:83698223-83698242 None:intergenic 20.0%
!! ACAATTACTATCATATCAAA+TGG - chr7_3:83698224-83698243 None:intergenic 20.0%
!!! ATTTTTAAAGTGCTACATTT+TGG - chr7_3:83699321-83699340 None:intergenic 20.0%
!!! GTTTTCTTCTTAAATAGTTT+GGG - chr7_3:83699345-83699364 None:intergenic 20.0%
!!! AGTTTTCTTCTTAAATAGTT+TGG - chr7_3:83699346-83699365 None:intergenic 20.0%
!! AAACTATTTAAGAAGAAAAC+TGG + chr7_3:83699345-83699364 Msa1131180:three_prime_UTR 20.0%
!! TTATGAAGTATGAATGATTA+TGG + chr7_3:83699931-83699950 Msa1131180:intron 20.0%
!!! TTTTTCTACTAAATAACTAC+AGG - chr7_3:83700375-83700394 None:intergenic 20.0%
!! TGTAGTTATTTAGTAGAAAA+AGG + chr7_3:83700374-83700393 Msa1131180:intron 20.0%
!! TTGTTACATTATCTTACAAA+GGG + chr7_3:83700753-83700772 Msa1131180:intron 20.0%
!!! ATACCTGTTATTTATTATCT+AGG + chr7_3:83701158-83701177 Msa1131180:intron 20.0%
!! ATTCCTAGATAATAAATAAC+AGG - chr7_3:83701164-83701183 None:intergenic 20.0%
!! TTGAATTGATAAACAAGAAA+CGG - chr7_3:83701207-83701226 None:intergenic 20.0%
!!! ATCTTTAATTGGTTTTCTTT+TGG + chr7_3:83701410-83701429 Msa1131180:intron 20.0%
!! ATATAAATTTACATTCTGGA+TGG - chr7_3:83701664-83701683 None:intergenic 20.0%
!!! TAAAACTTTTTAGAAATGTG+TGG - chr7_3:83702157-83702176 None:intergenic 20.0%
!!! TTGATGGTATATATTTTGTT+TGG + chr7_3:83702204-83702223 Msa1131180:three_prime_UTR 20.0%
!! GTATTGAGATTATGTTATAT+GGG + chr7_3:83702481-83702500 Msa1131180:three_prime_UTR 20.0%
! CACTATTATCATTGCAATAA+TGG + chr7_3:83696106-83696125 Msa1131180:exon 25.0%
!! TTTTGTGTTTTACATGGATT+TGG + chr7_3:83696763-83696782 Msa1131180:CDS 25.0%
!! TTTGTGTTTTACATGGATTT+GGG + chr7_3:83696764-83696783 Msa1131180:CDS 25.0%
!! TTTATCTTTTTCTACAGATC+CGG - chr7_3:83696864-83696883 None:intergenic 25.0%
! GATATAATTCATTCATAGCT+TGG + chr7_3:83697147-83697166 Msa1131180:intron 25.0%
!! GAAAAATTAGTTTACACTGA+CGG + chr7_3:83697208-83697227 Msa1131180:intron 25.0%
!! ACCTGATTTTGAATAAAACA+GGG - chr7_3:83697252-83697271 None:intergenic 25.0%
!! AACCTGATTTTGAATAAAAC+AGG - chr7_3:83697253-83697272 None:intergenic 25.0%
!!! TACTTATTAGTTAACTTGCT+TGG + chr7_3:83697296-83697315 Msa1131180:intron 25.0%
!!! TTCTAAAATTGGTTACTCAT+AGG + chr7_3:83697322-83697341 Msa1131180:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr7_3:83697629-83697648 Msa1131180:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr7_3:83697771-83697790 Msa1131180:intron 25.0%
! GATCTATCAAAAACCATATT+TGG - chr7_3:83697811-83697830 None:intergenic 25.0%
! TACAACTCATCATACAAAAA+AGG - chr7_3:83697917-83697936 None:intergenic 25.0%
!! ATCTTTTCACACATAATATG+GGG + chr7_3:83698055-83698074 Msa1131180:intron 25.0%
!! GTTCTTTTTCCAATACAAAA+TGG - chr7_3:83698723-83698742 None:intergenic 25.0%
! AAATTAAGTTCATAGGCTTT+AGG - chr7_3:83699054-83699073 None:intergenic 25.0%
! AAACAATCAACTTGAAAAGA+TGG - chr7_3:83699232-83699251 None:intergenic 25.0%
! CTTCATAGAAAGATTTAGAT+AGG + chr7_3:83699255-83699274 Msa1131180:three_prime_UTR 25.0%
!!! CTACATTTTGGTTTTGAATA+TGG - chr7_3:83699309-83699328 None:intergenic 25.0%
!!! TGTATTTTAGAATGCACTAA+GGG - chr7_3:83699556-83699575 None:intergenic 25.0%
!!! TTCATTCATGCAATTTGTTT+TGG + chr7_3:83699715-83699734 Msa1131180:intron 25.0%
! TATTCCAACAAATTTCAGTT+TGG + chr7_3:83699817-83699836 Msa1131180:intron 25.0%
! ACAGTTGAAAATATTGAACA+AGG + chr7_3:83700209-83700228 Msa1131180:intron 25.0%
! CAGTTGAAAATATTGAACAA+GGG + chr7_3:83700210-83700229 Msa1131180:intron 25.0%
! TTTCATGTCTCTTAGAATTT+GGG + chr7_3:83700399-83700418 Msa1131180:intron 25.0%
!! TGATTATTTCTTGAGAAGAT+AGG + chr7_3:83700700-83700719 Msa1131180:intron 25.0%
! CTTTGTAAGATAATGTAACA+AGG - chr7_3:83700754-83700773 None:intergenic 25.0%
! CTTGTTACATTATCTTACAA+AGG + chr7_3:83700752-83700771 Msa1131180:intron 25.0%
! TGTTACATTATCTTACAAAG+GGG + chr7_3:83700754-83700773 Msa1131180:intron 25.0%
! GATAATAAATAACAGGTATG+TGG - chr7_3:83701157-83701176 None:intergenic 25.0%
! ATGGAAAAAAGAGATGAAAA+AGG + chr7_3:83701287-83701306 Msa1131180:three_prime_UTR 25.0%
!! AAAAGGTTTTCAATTCAAGA+AGG + chr7_3:83701304-83701323 Msa1131180:three_prime_UTR 25.0%
!! TTGGTTGACCTATTTTATTA+TGG + chr7_3:83701470-83701489 Msa1131180:intron 25.0%
! TTGTTGCTCCATAATAAAAT+AGG - chr7_3:83701481-83701500 None:intergenic 25.0%
!! TGTATTTTATTGTTCTGTGT+GGG + chr7_3:83702021-83702040 Msa1131180:three_prime_UTR 25.0%
!!! ATTTCTTTGTCACTTTTACA+CGG + chr7_3:83702069-83702088 Msa1131180:three_prime_UTR 25.0%
!! AATTGGTTTATAAAATTGCC+CGG - chr7_3:83702308-83702327 None:intergenic 25.0%
! CGTATTGAGATTATGTTATA+TGG + chr7_3:83702480-83702499 Msa1131180:three_prime_UTR 25.0%
AGAAGTTGTTGTGATTAAGA+GGG - chr7_3:83696207-83696226 None:intergenic 30.0%
! TTTTGATGAGGATGTAGAAA+TGG - chr7_3:83696367-83696386 None:intergenic 30.0%
AACAACACATCTCTAACAAA+CGG - chr7_3:83696641-83696660 None:intergenic 30.0%
!! TTAGTGCTGAGATTTTTCTA+TGG + chr7_3:83696699-83696718 Msa1131180:CDS 30.0%
!!! TGTTGGTTTTGTGTTTTACA+TGG + chr7_3:83696757-83696776 Msa1131180:CDS 30.0%
!! ACTTTCAATTAGCTTTGTGA+TGG + chr7_3:83696928-83696947 Msa1131180:intron 30.0%
!!! AATTAGCTTTGTGATGGTTT+TGG + chr7_3:83696934-83696953 Msa1131180:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr7_3:83697009-83697028 Msa1131180:intron 30.0%
!!! ACGTATTTTTTCTTTGGTAG+TGG - chr7_3:83697054-83697073 None:intergenic 30.0%
!!! AAGCACACGTATTTTTTCTT+TGG - chr7_3:83697060-83697079 None:intergenic 30.0%
!! TCCCTGTTTTATTCAAAATC+AGG + chr7_3:83697248-83697267 Msa1131180:intron 30.0%
!! TTGCTTGGACTTTCTAAAAT+TGG + chr7_3:83697311-83697330 Msa1131180:intron 30.0%
CATTGTTTCAAGGTTACATA+TGG - chr7_3:83697461-83697480 None:intergenic 30.0%
CATATGTAACCTTGAAACAA+TGG + chr7_3:83697459-83697478 Msa1131180:intron 30.0%
CTCAGTTATAGTAGAAAAGT+TGG + chr7_3:83697618-83697637 Msa1131180:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr7_3:83697695-83697714 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr7_3:83697696-83697715 Msa1131180:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - chr7_3:83697764-83697783 None:intergenic 30.0%
! CACCTCTAAATCTTTTCTAA+TGG - chr7_3:83697776-83697795 None:intergenic 30.0%
! GAATGAGTTGAATCCAAATA+TGG + chr7_3:83697795-83697814 Msa1131180:intron 30.0%
! TGGTTTTTGATAGATCACTA+TGG + chr7_3:83697815-83697834 Msa1131180:intron 30.0%
TGTATGATGAGTTGTAGTAA+TGG + chr7_3:83697921-83697940 Msa1131180:intron 30.0%
CACAATCGTTATTTATGTTG+TGG + chr7_3:83698008-83698027 Msa1131180:intron 30.0%
! TCTTTTCACACATAATATGG+GGG + chr7_3:83698056-83698075 Msa1131180:intron 30.0%
ATTTAATGTCTACCGACAAA+GGG - chr7_3:83698098-83698117 None:intergenic 30.0%
TAAAGTCTACTATCACTAAG+TGG - chr7_3:83698273-83698292 None:intergenic 30.0%
TTAGTGATAGTAGACTTTAG+TGG + chr7_3:83698274-83698293 Msa1131180:intron 30.0%
!!! CCTATCTAATTTTTTTACCC+AGG - chr7_3:83698358-83698377 None:intergenic 30.0%
CCTGGGTAAAAAAATTAGAT+AGG + chr7_3:83698355-83698374 Msa1131180:intron 30.0%
! ATGGAACAGATTTTATGCAT+CGG + chr7_3:83698552-83698571 Msa1131180:CDS 30.0%
AAAACTATGGGATGATTAAG+TGG - chr7_3:83698631-83698650 None:intergenic 30.0%
! TGCATTTCTCCATTTTGTAT+TGG + chr7_3:83698711-83698730 Msa1131180:CDS 30.0%
AACGTGGAAATTAAGTTCAT+AGG - chr7_3:83699061-83699080 None:intergenic 30.0%
TATGAACTTAATTTCCACGT+TGG + chr7_3:83699060-83699079 Msa1131180:CDS 30.0%
!!! AGGCCTCTATATTGTTTTTA+TGG + chr7_3:83699188-83699207 Msa1131180:CDS 30.0%
CTGCCATAAAAACAATATAG+AGG - chr7_3:83699194-83699213 None:intergenic 30.0%
!! CAAAACTTGTGTTTTTGAAC+AGG - chr7_3:83699281-83699300 None:intergenic 30.0%
!!! ATTTTTTGCACAAAACGGAA+CGG - chr7_3:83699372-83699391 None:intergenic 30.0%
!!! ACTGGATTTTTTGCACAAAA+CGG - chr7_3:83699377-83699396 None:intergenic 30.0%
AGAGATTGGGTTTCAAATTA+GGG - chr7_3:83699483-83699502 None:intergenic 30.0%
AAGAGATTGGGTTTCAAATT+AGG - chr7_3:83699484-83699503 None:intergenic 30.0%
AACGAGATATCAAAGAGATT+GGG - chr7_3:83699496-83699515 None:intergenic 30.0%
! GCAATGAGTTGGATTTATTA+AGG - chr7_3:83699525-83699544 None:intergenic 30.0%
!!! GTGTATTTTAGAATGCACTA+AGG - chr7_3:83699557-83699576 None:intergenic 30.0%
TCTTTCTCTATTGAAGATTG+AGG + chr7_3:83699673-83699692 Msa1131180:three_prime_UTR 30.0%
AACACCAAACTGAAATTTGT+TGG - chr7_3:83699824-83699843 None:intergenic 30.0%
AAATGACCTTCAAAACTTCA+TGG - chr7_3:83699854-83699873 None:intergenic 30.0%
TGCACAAGATAATTGGAATT+TGG - chr7_3:83700095-83700114 None:intergenic 30.0%
ACAAACTTGCACAAGATAAT+TGG - chr7_3:83700102-83700121 None:intergenic 30.0%
CTTTCATGTCTCTTAGAATT+TGG + chr7_3:83700398-83700417 Msa1131180:intron 30.0%
TTAACTCATCCTTACAAAAC+TGG + chr7_3:83700428-83700447 Msa1131180:intron 30.0%
!!! TTTTAAGCATTGGCTTTAAG+AGG - chr7_3:83700657-83700676 None:intergenic 30.0%
! CAGGTTTTCATTTTAAGCAT+TGG - chr7_3:83700667-83700686 None:intergenic 30.0%
!! GAAGATAGGACTTGTTAATT+TGG + chr7_3:83700714-83700733 Msa1131180:intron 30.0%
!! GACTTGTTAATTTGGAGATA+CGG + chr7_3:83700722-83700741 Msa1131180:intron 30.0%
TACAGAAGATGAAAGAACAA+AGG - chr7_3:83700808-83700827 None:intergenic 30.0%
GAAATATACAAGAACGCTTT+GGG - chr7_3:83700974-83700993 None:intergenic 30.0%
TGAAATATACAAGAACGCTT+TGG - chr7_3:83700975-83700994 None:intergenic 30.0%
AAACAGAATTGTTTCAGTGA+GGG + chr7_3:83701038-83701057 Msa1131180:intron 30.0%
AGGAAATCTATAAGTAGCAA+TGG + chr7_3:83701067-83701086 Msa1131180:intron 30.0%
!! AATACTTGTTATCTGTACCA+CGG - chr7_3:83701733-83701752 None:intergenic 30.0%
TAACTGTAGACAAGAAATGT+TGG + chr7_3:83701802-83701821 Msa1131180:three_prime_UTR 30.0%
! CTGTATTTTATTGTTCTGTG+TGG + chr7_3:83702020-83702039 Msa1131180:three_prime_UTR 30.0%
! GAAGTGAACTTAACTTTTGA+TGG + chr7_3:83702188-83702207 Msa1131180:three_prime_UTR 30.0%
TGCAATGCAACAATATAGAA+AGG - chr7_3:83702267-83702286 None:intergenic 30.0%
TTCTATATTGTTGCATTGCA+TGG + chr7_3:83702267-83702286 Msa1131180:three_prime_UTR 30.0%
TAACACTGGTCCTAAAAAAT+TGG - chr7_3:83702325-83702344 None:intergenic 30.0%
!!! AATTTTTTAGGACCAGTGTT+AGG + chr7_3:83702324-83702343 Msa1131180:three_prime_UTR 30.0%
! AGAAGATGATAATGAGAGTG+AGG - chr7_3:83696160-83696179 None:intergenic 35.0%
GAGAAGTTGTTGTGATTAAG+AGG - chr7_3:83696208-83696227 None:intergenic 35.0%
TAGTTGTGACGATTGAGAAA+TGG - chr7_3:83696400-83696419 None:intergenic 35.0%
! GCGTTCTATCTTTTCTTTGT+TGG + chr7_3:83696740-83696759 Msa1131180:CDS 35.0%
! GTTTTACATGGATTTGGGAA+TGG + chr7_3:83696769-83696788 Msa1131180:CDS 35.0%
GAAAAAGATAAACACGCTTC+TGG + chr7_3:83696872-83696891 Msa1131180:CDS 35.0%
!! ATTTCGTGGATCTTTTGGTT+CGG + chr7_3:83696895-83696914 Msa1131180:CDS 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr7_3:83697014-83697033 Msa1131180:intron 35.0%
!!! TTTTTTCTTTGGTAGTGGCT+GGG - chr7_3:83697049-83697068 None:intergenic 35.0%
!!! ATTTTTTCTTTGGTAGTGGC+TGG - chr7_3:83697050-83697069 None:intergenic 35.0%
!! AGGTTTGTTAAACACTTGCA+CGG + chr7_3:83697268-83697287 Msa1131180:intron 35.0%
ACATCAAATGAATAGCTCCA+AGG - chr7_3:83697485-83697504 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr7_3:83697638-83697657 Msa1131180:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr7_3:83697643-83697662 Msa1131180:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr7_3:83697699-83697718 Msa1131180:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG - chr7_3:83697754-83697773 None:intergenic 35.0%
GGTATATGTTTCTCAAGTTC+TGG + chr7_3:83697942-83697961 Msa1131180:intron 35.0%
GATTTAATGTCTACCGACAA+AGG - chr7_3:83698099-83698118 None:intergenic 35.0%
TGTCGGTAGACATTAAATCA+AGG + chr7_3:83698100-83698119 Msa1131180:intron 35.0%
TGATCATAGTAGCATCAACT+AGG - chr7_3:83698199-83698218 None:intergenic 35.0%
GAAATCTGTAAGCAGAGTAT+GGG - chr7_3:83698466-83698485 None:intergenic 35.0%
AGGGATTGTCAATCTTAAGA+GGG - chr7_3:83698515-83698534 None:intergenic 35.0%
TAAAATCTGTTCCATTGCGA+TGG - chr7_3:83698547-83698566 None:intergenic 35.0%
TGAGTTACATGCATACAAGA+GGG - chr7_3:83698602-83698621 None:intergenic 35.0%
ATGAGTTACATGCATACAAG+AGG - chr7_3:83698603-83698622 None:intergenic 35.0%
!! ACAGAGGGAAAAGAGTATTA+GGG - chr7_3:83698660-83698679 None:intergenic 35.0%
CCAACAAGCATGTTAAACAT+TGG - chr7_3:83698991-83699010 None:intergenic 35.0%
CCAATGTTTAACATGCTTGT+TGG + chr7_3:83698988-83699007 Msa1131180:CDS 35.0%
! TTTAACATGCTTGTTGGTCT+TGG + chr7_3:83698994-83699013 Msa1131180:CDS 35.0%
!!! TTTTTTGCACAAAACGGAAC+GGG - chr7_3:83699371-83699390 None:intergenic 35.0%
AAAATCCAGTTCTTGATACC+TGG + chr7_3:83699387-83699406 Msa1131180:three_prime_UTR 35.0%
GAGATTGGGTTTCAAATTAG+GGG - chr7_3:83699482-83699501 None:intergenic 35.0%
CAACGAGATATCAAAGAGAT+TGG - chr7_3:83699497-83699516 None:intergenic 35.0%
TTCAAGAGAAGAAAGCTTCA+AGG - chr7_3:83699776-83699795 None:intergenic 35.0%
ATGATTCTCTCTATGCTTTC+TGG + chr7_3:83699958-83699977 Msa1131180:intron 35.0%
TGATTCTCTCTATGCTTTCT+GGG + chr7_3:83699959-83699978 Msa1131180:intron 35.0%
! TGGGTTTTCTTGCACAAATT+TGG + chr7_3:83699978-83699997 Msa1131180:intron 35.0%
!! TTTTGGTGGTATTAAGCTTG+TGG + chr7_3:83700037-83700056 Msa1131180:intron 35.0%
!! AGTTTTATGCTGAATCTGCT+TGG + chr7_3:83700135-83700154 Msa1131180:intron 35.0%
ATGTCTCTTAGAATTTGGGT+TGG + chr7_3:83700403-83700422 Msa1131180:intron 35.0%
!! CCTTAAATGCCAGTTTTGTA+AGG - chr7_3:83700440-83700459 None:intergenic 35.0%
CCTTACAAAACTGGCATTTA+AGG + chr7_3:83700437-83700456 Msa1131180:intron 35.0%
! AAAACTGGCATTTAAGGTGT+GGG + chr7_3:83700443-83700462 Msa1131180:intron 35.0%
TTTCATTGTGTAGGTGTGAA+GGG - chr7_3:83700532-83700551 None:intergenic 35.0%
! TTTAAGAGGAAGCGTGTTAA+TGG - chr7_3:83700643-83700662 None:intergenic 35.0%
TAATCATCATCTCACTCTTC+AGG - chr7_3:83700686-83700705 None:intergenic 35.0%
!!! AAGGGGCTATTTTGATAACA+TGG + chr7_3:83700771-83700790 Msa1131180:intron 35.0%
!!! AGGGGCTATTTTGATAACAT+GGG + chr7_3:83700772-83700791 Msa1131180:intron 35.0%
ATCACCGAAGAAAAATGAGA+AGG - chr7_3:83700865-83700884 None:intergenic 35.0%
GAAACAGAATTGTTTCAGTG+AGG + chr7_3:83701037-83701056 Msa1131180:intron 35.0%
TTGTGGCTGTAACAATAGTT+TGG + chr7_3:83701105-83701124 Msa1131180:intron 35.0%
TAAATAACAGGTATGTGGCA+AGG - chr7_3:83701152-83701171 None:intergenic 35.0%
ACAAGAAACGGCTAAATCAT+AGG - chr7_3:83701195-83701214 None:intergenic 35.0%
!!! CTTTTTTCCATTTGATGCTC+TGG - chr7_3:83701278-83701297 None:intergenic 35.0%
! CTTTCCATAACGATTTTCCT+AGG + chr7_3:83701779-83701798 Msa1131180:three_prime_UTR 35.0%
GTTACCTAGGAAAATCGTTA+TGG - chr7_3:83701786-83701805 None:intergenic 35.0%
TTTCTTGTCTACAGTTACCT+AGG - chr7_3:83701799-83701818 None:intergenic 35.0%
! AAAAGCATGAGGAATAGCAA+TGG + chr7_3:83701834-83701853 Msa1131180:three_prime_UTR 35.0%
GTCAAATACGCATAAACTTG+TGG - chr7_3:83701869-83701888 None:intergenic 35.0%
TGTACTTGCAACAAATTTCC+AGG - chr7_3:83701893-83701912 None:intergenic 35.0%
!! AATTTGTTGCAAGTACATCC+CGG + chr7_3:83701896-83701915 Msa1131180:three_prime_UTR 35.0%
CCATTACATCATTTGACTAG+TGG - chr7_3:83701947-83701966 None:intergenic 35.0%
CCACTAGTCAAATGATGTAA+TGG + chr7_3:83701944-83701963 Msa1131180:three_prime_UTR 35.0%
GGAATTACAAAAGCTGAAGT+GGG + chr7_3:83702097-83702116 Msa1131180:three_prime_UTR 35.0%
GAATTACAAAAGCTGAAGTG+GGG + chr7_3:83702098-83702117 Msa1131180:three_prime_UTR 35.0%
AATTACAAAAGCTGAAGTGG+GGG + chr7_3:83702099-83702118 Msa1131180:three_prime_UTR 35.0%
GGATTATTTCCTCACTTCTT+GGG + chr7_3:83702120-83702139 Msa1131180:three_prime_UTR 35.0%
TACTTTGACTGCACAAAACT+TGG + chr7_3:83702232-83702251 Msa1131180:three_prime_UTR 35.0%
! ATGGTTAAGAAGCAGTTTTC+CGG + chr7_3:83702286-83702305 Msa1131180:three_prime_UTR 35.0%
! TGTTTTGCCAACAATCCATT+TGG - chr7_3:83702362-83702381 None:intergenic 35.0%
GCTAGAAGGTTAATACTAGA+AGG + chr7_3:83702400-83702419 Msa1131180:three_prime_UTR 35.0%
AGGAATAAGAAAGAACTGAG+TGG + chr7_3:83702420-83702439 Msa1131180:three_prime_UTR 35.0%
GGAATAAGAAAGAACTGAGT+GGG + chr7_3:83702421-83702440 Msa1131180:three_prime_UTR 35.0%
GAATAAGAAAGAACTGAGTG+GGG + chr7_3:83702422-83702441 Msa1131180:three_prime_UTR 35.0%
AGACAATAGCATAGCAGAAG+AGG - chr7_3:83696027-83696046 None:intergenic 40.0%
! GAGGATTAGTGAGAGTGAAA+TGG - chr7_3:83696141-83696160 None:intergenic 40.0%
GTTGTTGTGATTAAGAGGGA+TGG - chr7_3:83696203-83696222 None:intergenic 40.0%
TGATGAGGATGTAGAAATGG+AGG - chr7_3:83696364-83696383 None:intergenic 40.0%
GATTGAGAAATGGTGAGAAG+CGG - chr7_3:83696390-83696409 None:intergenic 40.0%
! ATTTTTCTATGGCAAGCCGT+TGG + chr7_3:83696710-83696729 Msa1131180:CDS 40.0%
ATAGAACGCAACGAATCCAA+CGG - chr7_3:83696729-83696748 None:intergenic 40.0%
!! TATTACGACGAAAAAGCGTC+CGG + chr7_3:83696842-83696861 Msa1131180:CDS 40.0%
! TCTGGATTTCGTGGATCTTT+TGG + chr7_3:83696890-83696909 Msa1131180:CDS 40.0%
! TGAAAGCACACGTATACGAA+AGG - chr7_3:83696960-83696979 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr7_3:83697015-83697034 Msa1131180:intron 40.0%
!!! TTTTTCTTTGGTAGTGGCTG+GGG - chr7_3:83697048-83697067 None:intergenic 40.0%
!! GGTTTGTTAAACACTTGCAC+GGG + chr7_3:83697269-83697288 Msa1131180:intron 40.0%
TAACCTTGAAACAATGGCCT+TGG + chr7_3:83697465-83697484 Msa1131180:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr7_3:83697686-83697705 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr7_3:83697724-83697743 Msa1131180:intron 40.0%
!! ATGTTTCTCAAGTTCTGGAC+AGG + chr7_3:83697947-83697966 Msa1131180:intron 40.0%
TTTCACACATAATATGGGGG+AGG + chr7_3:83698059-83698078 Msa1131180:intron 40.0%
GACATTAAATCAAGGACAGC+TGG + chr7_3:83698108-83698127 Msa1131180:intron 40.0%
GAAATGTTATGCATCGTGTG+TGG + chr7_3:83698377-83698396 Msa1131180:intron 40.0%
GGAAATCTGTAAGCAGAGTA+TGG - chr7_3:83698467-83698486 None:intergenic 40.0%
ACTCTGCTTACAGATTTCCA+AGG + chr7_3:83698468-83698487 Msa1131180:intron 40.0%
CTTACAGATTTCCAAGGCAT+GGG + chr7_3:83698474-83698493 Msa1131180:intron 40.0%
AATCTTAAGAGGGTTGAGAC+AGG - chr7_3:83698505-83698524 None:intergenic 40.0%
GAGGGATTGTCAATCTTAAG+AGG - chr7_3:83698516-83698535 None:intergenic 40.0%
! TAGTGGACAAAGAGCGATAT+TGG - chr7_3:83698578-83698597 None:intergenic 40.0%
TTAGGGAGGAGGAAAACTAT+GGG - chr7_3:83698643-83698662 None:intergenic 40.0%
ATTAGGGAGGAGGAAAACTA+TGG - chr7_3:83698644-83698663 None:intergenic 40.0%
!! CACAGAGGGAAAAGAGTATT+AGG - chr7_3:83698661-83698680 None:intergenic 40.0%
! CTAATACTCTTTTCCCTCTG+TGG + chr7_3:83698659-83698678 Msa1131180:CDS 40.0%
GAAGCTTGTCATGAACACTA+CGG - chr7_3:83698686-83698705 None:intergenic 40.0%
CCAAAACACACTCATAACGA+AGG - chr7_3:83698782-83698801 None:intergenic 40.0%
! CCTTCGTTATGAGTGTGTTT+TGG + chr7_3:83698779-83698798 Msa1131180:CDS 40.0%
! TTTTGGATATCTACCACAGC+TGG + chr7_3:83698796-83698815 Msa1131180:CDS 40.0%
GTGAATTGCCTTGAAGCTTT+AGG + chr7_3:83698826-83698845 Msa1131180:CDS 40.0%
ATGCAATCACTATACCAACG+TGG - chr7_3:83699077-83699096 None:intergenic 40.0%
!! TTCCTGCTTTTAAGCCTCAT+GGG + chr7_3:83699102-83699121 Msa1131180:CDS 40.0%
GGTCTCTCTTAGTAATCACT+TGG + chr7_3:83699124-83699143 Msa1131180:CDS 40.0%
AGAAACCAGGTATCAAGAAC+TGG - chr7_3:83699395-83699414 None:intergenic 40.0%
!! TAGTTAGGGTTTTTCAGCTG+TGG - chr7_3:83699451-83699470 None:intergenic 40.0%
GGTTTCAAATTAGGGGATAG+GGG - chr7_3:83699475-83699494 None:intergenic 40.0%
GGGTTTCAAATTAGGGGATA+GGG - chr7_3:83699476-83699495 None:intergenic 40.0%
TGGGTTTCAAATTAGGGGAT+AGG - chr7_3:83699477-83699496 None:intergenic 40.0%
AGCTTTCTTCTCTTGAAGCT+CGG + chr7_3:83699779-83699798 Msa1131180:intron 40.0%
!! CACTCTCCATGAAGTTTTGA+AGG + chr7_3:83699845-83699864 Msa1131180:intron 40.0%
!! TTTTGAAGGTCATTTCCTGC+AGG + chr7_3:83699859-83699878 Msa1131180:intron 40.0%
!! GCTATGGTGCTAATGAGTTT+TGG + chr7_3:83700020-83700039 Msa1131180:intron 40.0%
!! ATGGTGCTAATGAGTTTTGG+TGG + chr7_3:83700023-83700042 Msa1131180:intron 40.0%
CAGAGTCATGCATATGCATA+TGG + chr7_3:83700163-83700182 Msa1131180:intron 40.0%
AGTCATGCATATGCATATGG+TGG + chr7_3:83700166-83700185 Msa1131180:intron 40.0%
GTCATGCATATGCATATGGT+GGG + chr7_3:83700167-83700186 Msa1131180:intron 40.0%
ACATCAGGACATTGGCATTT+AGG + chr7_3:83700258-83700277 Msa1131180:intron 40.0%
GGACATTGGCATTTAGGAAA+TGG + chr7_3:83700264-83700283 Msa1131180:intron 40.0%
! CAAAACTGGCATTTAAGGTG+TGG + chr7_3:83700442-83700461 Msa1131180:intron 40.0%
ATTTAGTCCCACATTGCCTA+GGG - chr7_3:83700504-83700523 None:intergenic 40.0%
TTCATTGTGTAGGTGTGAAG+GGG - chr7_3:83700531-83700550 None:intergenic 40.0%
CTTTCATTGTGTAGGTGTGA+AGG - chr7_3:83700533-83700552 None:intergenic 40.0%
! CACCTACACAATGAAAGTGT+TGG + chr7_3:83700536-83700555 Msa1131180:intron 40.0%
CTCCAACACTTTCATTGTGT+AGG - chr7_3:83700541-83700560 None:intergenic 40.0%
!! CTACACAATGAAAGTGTTGG+AGG + chr7_3:83700539-83700558 Msa1131180:intron 40.0%
GCTGCATAATTACGGCATTT+GGG - chr7_3:83700580-83700599 None:intergenic 40.0%
AGCTGCATAATTACGGCATT+TGG - chr7_3:83700581-83700600 None:intergenic 40.0%
TGCCTCTAGCTGCATAATTA+CGG - chr7_3:83700588-83700607 None:intergenic 40.0%
! GCGTGTTAATGGACATTGTT+GGG - chr7_3:83700632-83700651 None:intergenic 40.0%
! AGCGTGTTAATGGACATTGT+TGG - chr7_3:83700633-83700652 None:intergenic 40.0%
!! GTCGCCTTCTCATTTTTCTT+CGG + chr7_3:83700858-83700877 Msa1131180:intron 40.0%
CTGTTCAGACAGAAGGTTAT+TGG + chr7_3:83700906-83700925 Msa1131180:intron 40.0%
!! CCATTTTTGACAAAGTGACC+CGG + chr7_3:83700995-83701014 Msa1131180:intron 40.0%
TATAACTCTTCCATGATGCC+GGG - chr7_3:83701016-83701035 None:intergenic 40.0%
CTATAACTCTTCCATGATGC+CGG - chr7_3:83701017-83701036 None:intergenic 40.0%
!! GTAGCAATGGCTTTAAGACA+CGG + chr7_3:83701080-83701099 Msa1131180:intron 40.0%
GATTGCAATACCTGTCACAT+TGG - chr7_3:83701242-83701261 None:intergenic 40.0%
! CTTACTACCAGAGCATCAAA+TGG + chr7_3:83701268-83701287 Msa1131180:three_prime_UTR 40.0%
TTCAATTCAAGAAGGCCTGT+CGG + chr7_3:83701312-83701331 Msa1131180:three_prime_UTR 40.0%
AAAATAGGTCAACCAACACC+AGG - chr7_3:83701466-83701485 None:intergenic 40.0%
!!! CTTTTTCAGCGCTCTTTGAA+TGG + chr7_3:83701705-83701724 Msa1131180:intron 40.0%
! GGAACTATGTGAAAAGCATG+AGG + chr7_3:83701823-83701842 Msa1131180:three_prime_UTR 40.0%
TGAGGAATAGCAATGGAAAG+TGG + chr7_3:83701841-83701860 Msa1131180:three_prime_UTR 40.0%
GTTTATGCGTATTTGACACC+TGG + chr7_3:83701872-83701891 Msa1131180:three_prime_UTR 40.0%
TGGAAACAACCAACAAGAAC+AGG - chr7_3:83701927-83701946 None:intergenic 40.0%
!! CGACATTAGCTAAGAGCATT+TGG + chr7_3:83701997-83702016 Msa1131180:three_prime_UTR 40.0%
!!! TCTTTGTCACTTTTACACGG+TGG + chr7_3:83702072-83702091 Msa1131180:three_prime_UTR 40.0%
CGGAATTACAAAAGCTGAAG+TGG + chr7_3:83702096-83702115 Msa1131180:three_prime_UTR 40.0%
GGGATTATTTCCTCACTTCT+TGG + chr7_3:83702119-83702138 Msa1131180:three_prime_UTR 40.0%
ATAATTGCTCCCAAGAAGTG+AGG - chr7_3:83702132-83702151 None:intergenic 40.0%
! TGGTTAAGAAGCAGTTTTCC+GGG + chr7_3:83702287-83702306 Msa1131180:three_prime_UTR 40.0%
!! GAGAGGAGAGAGTATTATCA+AGG + chr7_3:83702515-83702534 Msa1131180:three_prime_UTR 40.0%
GTGATTAAGAGGGATGGAGA+GGG - chr7_3:83696197-83696216 None:intergenic 45.0%
TGTGATTAAGAGGGATGGAG+AGG - chr7_3:83696198-83696217 None:intergenic 45.0%
TTGAGGAGTGATCTACGAAG+AGG - chr7_3:83696230-83696249 None:intergenic 45.0%
TGGATTGAATGGGGCAAGAT+GGG - chr7_3:83696262-83696281 None:intergenic 45.0%
TTGGATTGAATGGGGCAAGA+TGG - chr7_3:83696263-83696282 None:intergenic 45.0%
TCTTGCCCCATTCAATCCAA+TGG + chr7_3:83696263-83696282 Msa1131180:CDS 45.0%
ATGCCGCCATTGGATTGAAT+GGG - chr7_3:83696272-83696291 None:intergenic 45.0%
GGAAAATGCAGTGGTAGTTG+AGG - chr7_3:83696295-83696314 None:intergenic 45.0%
GAGTTTGAGGGAAAATGCAG+TGG - chr7_3:83696304-83696323 None:intergenic 45.0%
TTGAGAGGATGGGAGTTTGA+GGG - chr7_3:83696316-83696335 None:intergenic 45.0%
ATTGAGAGGATGGGAGTTTG+AGG - chr7_3:83696317-83696336 None:intergenic 45.0%
GAAATGGAGGATGAGGAGAA+TGG - chr7_3:83696351-83696370 None:intergenic 45.0%
GGATGTAGAAATGGAGGATG+AGG - chr7_3:83696358-83696377 None:intergenic 45.0%
CCATACTAGGAGAGAGATTG+AGG - chr7_3:83696436-83696455 None:intergenic 45.0%
CCTCAATCTCTCTCCTAGTA+TGG + chr7_3:83696433-83696452 Msa1131180:CDS 45.0%
! TTCGTCTCTGCTCTTGTTGT+CGG + chr7_3:83696572-83696591 Msa1131180:CDS 45.0%
TGGATTTGGGAATGGCCAAT+CGG + chr7_3:83696777-83696796 Msa1131180:CDS 45.0%
! AGAACTCTTTTCCCTCCGAT+TGG - chr7_3:83696795-83696814 None:intergenic 45.0%
AAAGAGTTCTGCGGATCTTG+AGG + chr7_3:83696805-83696824 Msa1131180:CDS 45.0%
AAGAGTTCTGCGGATCTTGA+GGG + chr7_3:83696806-83696825 Msa1131180:CDS 45.0%
!!! GGACGCTTTTTCGTCGTAAT+AGG - chr7_3:83696843-83696862 None:intergenic 45.0%
AAACACGCTTCTGGATTTCG+TGG + chr7_3:83696881-83696900 Msa1131180:CDS 45.0%
! GATCTAAAACCAAACGCTGC+AGG + chr7_3:83697431-83697450 Msa1131180:intron 45.0%
TATGGTTAACCTGCAGCGTT+TGG - chr7_3:83697443-83697462 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr7_3:83697685-83697704 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr7_3:83697708-83697727 Msa1131180:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr7_3:83697718-83697737 Msa1131180:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_3:83697864-83697883 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_3:83697865-83697884 None:intergenic 45.0%
TAGCCAGTTGATCCCTTTGT+CGG + chr7_3:83698083-83698102 Msa1131180:intron 45.0%
GGTCAGTGGTCAACGTAATT+TGG - chr7_3:83698178-83698197 None:intergenic 45.0%
AGTAGCATCAACTAGGTCAG+TGG - chr7_3:83698192-83698211 None:intergenic 45.0%
GCTTACAGATTTCCAAGGCA+TGG + chr7_3:83698473-83698492 Msa1131180:intron 45.0%
!! GGAAAAGAGTATTAGGGAGG+AGG - chr7_3:83698654-83698673 None:intergenic 45.0%
!! GAGGGAAAAGAGTATTAGGG+AGG - chr7_3:83698657-83698676 None:intergenic 45.0%
!! AGGCAAATGCTCTGCTTTTG+GGG - chr7_3:83698746-83698765 None:intergenic 45.0%
!! CAGGCAAATGCTCTGCTTTT+GGG - chr7_3:83698747-83698766 None:intergenic 45.0%
! ACAGGCAAATGCTCTGCTTT+TGG - chr7_3:83698748-83698767 None:intergenic 45.0%
! AAAAGCAGAGCATTTGCCTG+TGG + chr7_3:83698747-83698766 Msa1131180:CDS 45.0%
TGAATTTCCCCATGCTAGCA+CGG - chr7_3:83698890-83698909 None:intergenic 45.0%
CTAGCATGGGGAAATTCAGT+GGG + chr7_3:83698892-83698911 Msa1131180:CDS 45.0%
TAGCATGGGGAAATTCAGTG+GGG + chr7_3:83698893-83698912 Msa1131180:CDS 45.0%
GATGTTGCAGTTGCTAAAGC+TGG + chr7_3:83698928-83698947 Msa1131180:CDS 45.0%
AGTTGCTAAAGCTGGTCATC+CGG + chr7_3:83698936-83698955 Msa1131180:CDS 45.0%
!! TGTTGGTCTTGGAACTGCTT+TGG + chr7_3:83699005-83699024 Msa1131180:CDS 45.0%
!! GTTCCTGCTTTTAAGCCTCA+TGG + chr7_3:83699101-83699120 Msa1131180:CDS 45.0%
!! TCCTGCTTTTAAGCCTCATG+GGG + chr7_3:83699103-83699122 Msa1131180:CDS 45.0%
TTACTAAGAGAGACCCCATG+AGG - chr7_3:83699119-83699138 None:intergenic 45.0%
AAAACCTAGGCACTCGGAAT+CGG - chr7_3:83699152-83699171 None:intergenic 45.0%
! ATTCCGAGTGCCTAGGTTTT+GGG + chr7_3:83699152-83699171 Msa1131180:CDS 45.0%
AGACAGAATCCCCAAAACCT+AGG - chr7_3:83699165-83699184 None:intergenic 45.0%
!! TTTTGGGGATTCTGTCTCGT+AGG + chr7_3:83699168-83699187 Msa1131180:CDS 45.0%
!! TAGGGGATAGGGGTTAGTTA+GGG - chr7_3:83699465-83699484 None:intergenic 45.0%
!! TTAGGGGATAGGGGTTAGTT+AGG - chr7_3:83699466-83699485 None:intergenic 45.0%
! TCACGCACTCTCTGATTTGT+TGG + chr7_3:83699887-83699906 Msa1131180:intron 45.0%
TGGTGGTATTAAGCTTGTGG+TGG + chr7_3:83700040-83700059 Msa1131180:intron 45.0%
GGTGGTATTAAGCTTGTGGT+GGG + chr7_3:83700041-83700060 Msa1131180:intron 45.0%
GTGGTATTAAGCTTGTGGTG+GGG + chr7_3:83700042-83700061 Msa1131180:intron 45.0%
! TGAGTTGAGTAGCAGACATC+AGG + chr7_3:83700243-83700262 Msa1131180:intron 45.0%
AGTAGCAGACATCAGGACAT+TGG + chr7_3:83700250-83700269 Msa1131180:intron 45.0%
ACTACACATGCCATATCCCT+AGG + chr7_3:83700485-83700504 Msa1131180:intron 45.0%
GATTTAGTCCCACATTGCCT+AGG - chr7_3:83700505-83700524 None:intergenic 45.0%
TGCCGTAATTATGCAGCTAG+AGG + chr7_3:83700583-83700602 Msa1131180:intron 45.0%
TTTCTTCGGTGATGTCTGCA+TGG + chr7_3:83700872-83700891 Msa1131180:intron 45.0%
TTCTTCGGTGATGTCTGCAT+GGG + chr7_3:83700873-83700892 Msa1131180:intron 45.0%
TGTGAGTCTGTTCAGACAGA+AGG + chr7_3:83700899-83700918 Msa1131180:intron 45.0%
! CCGGGTCACTTTGTCAAAAA+TGG - chr7_3:83700998-83701017 None:intergenic 45.0%
CGGCATCATGGAAGAGTTAT+AGG + chr7_3:83701015-83701034 Msa1131180:intron 45.0%
TGTTTCAGTGAGGGTTGTGA+AGG + chr7_3:83701047-83701066 Msa1131180:intron 45.0%
!! GGCTTTAAGACACGGTATTG+TGG + chr7_3:83701088-83701107 Msa1131180:intron 45.0%
TCCTTGTTCTCCAATGTGAC+AGG + chr7_3:83701229-83701248 Msa1131180:three_prime_UTR 45.0%
ACCTGTCACATTGGAGAACA+AGG - chr7_3:83701233-83701252 None:intergenic 45.0%
TCAATTCAAGAAGGCCTGTC+GGG + chr7_3:83701313-83701332 Msa1131180:three_prime_UTR 45.0%
GAGCAGTGCAGGTATAACTT+TGG + chr7_3:83701365-83701384 Msa1131180:intron 45.0%
TGCTCTTAGCTAATGTCGTG+TGG - chr7_3:83701995-83702014 None:intergenic 45.0%
!!! TGTCACTTTTACACGGTGGT+CGG + chr7_3:83702076-83702095 Msa1131180:three_prime_UTR 45.0%
CTCTCAAGCTTAGTGCTAGA+AGG + chr7_3:83702386-83702405 Msa1131180:three_prime_UTR 45.0%
ATTAAGAGGGATGGAGAGGG+AGG - chr7_3:83696194-83696213 None:intergenic 50.0%
AAGATGGGGCGATGTTGTTG+AGG - chr7_3:83696247-83696266 None:intergenic 50.0%
GGATTGAATGGGGCAAGATG+GGG - chr7_3:83696261-83696280 None:intergenic 50.0%
TGCCCCATTCAATCCAATGG+CGG + chr7_3:83696266-83696285 Msa1131180:CDS 50.0%
TGCCGCCATTGGATTGAATG+GGG - chr7_3:83696271-83696290 None:intergenic 50.0%
GATGCCGCCATTGGATTGAA+TGG - chr7_3:83696273-83696292 None:intergenic 50.0%
ATGAGGAGAATGGAGAGGGA+GGG - chr7_3:83696341-83696360 None:intergenic 50.0%
GAGGATGAGGAGAATGGAGA+GGG - chr7_3:83696345-83696364 None:intergenic 50.0%
!! GGTGAGAAGCGGTTTTGATG+AGG - chr7_3:83696379-83696398 None:intergenic 50.0%
ACACTTCTCGCTCTCGGTAA+CGG + chr7_3:83696464-83696483 Msa1131180:CDS 50.0%
! AAGAGCAGAGACGAAAGCAC+CGG - chr7_3:83696567-83696586 None:intergenic 50.0%
! TGCTCCTTTTCCCGTTGATC+CGG + chr7_3:83696613-83696632 Msa1131180:CDS 50.0%
ACATCTCTAACAAACGGCGC+CGG - chr7_3:83696635-83696654 None:intergenic 50.0%
ATTTGGGAATGGCCAATCGG+AGG + chr7_3:83696780-83696799 Msa1131180:CDS 50.0%
TTTGGGAATGGCCAATCGGA+GGG + chr7_3:83696781-83696800 Msa1131180:CDS 50.0%
TCGGAGGGAAAAGAGTTCTG+CGG + chr7_3:83696796-83696815 Msa1131180:CDS 50.0%
CAACCAACTGAGCTAAGCTC+AGG - chr7_3:83696989-83697008 None:intergenic 50.0%
CTGAGCTTAGCTCAGTTGGT+TGG + chr7_3:83696987-83697006 Msa1131180:intron 50.0%
GCTCCAAGGCCATTGTTTCA+AGG - chr7_3:83697471-83697490 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr7_3:83697860-83697879 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_3:83697866-83697885 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_3:83697863-83697882 Msa1131180:intron 50.0%
CTACCGACAAAGGGATCAAC+TGG - chr7_3:83698089-83698108 None:intergenic 50.0%
AGCAGAGTATGGGATACGTC+AGG - chr7_3:83698456-83698475 None:intergenic 50.0%
!! ATTGCGATGGTGCTGGTTGA+GGG - chr7_3:83698534-83698553 None:intergenic 50.0%
CATGCATACAAGAGGGCTAG+TGG - chr7_3:83698595-83698614 None:intergenic 50.0%
TGAACACTACGGACCACAGA+GGG - chr7_3:83698675-83698694 None:intergenic 50.0%
ATGAACACTACGGACCACAG+AGG - chr7_3:83698676-83698695 None:intergenic 50.0%
!! GGCAAATGCTCTGCTTTTGG+GGG - chr7_3:83698745-83698764 None:intergenic 50.0%
GAAGCGTGCCTAAAGCTTCA+AGG - chr7_3:83698837-83698856 None:intergenic 50.0%
GTAAGACCTAGGAATGCCTG+CGG - chr7_3:83698868-83698887 None:intergenic 50.0%
ATGCTAGCACGGTAAGACCT+AGG - chr7_3:83698879-83698898 None:intergenic 50.0%
TAGGTCTTACCGTGCTAGCA+TGG + chr7_3:83698878-83698897 Msa1131180:CDS 50.0%
AGGTCTTACCGTGCTAGCAT+GGG + chr7_3:83698879-83698898 Msa1131180:CDS 50.0%
GCTAGCATGGGGAAATTCAG+TGG + chr7_3:83698891-83698910 Msa1131180:CDS 50.0%
AGCATGGGGAAATTCAGTGG+GGG + chr7_3:83698894-83698913 Msa1131180:CDS 50.0%
TAAAGCTGGTCATCCGGCAA+TGG + chr7_3:83698942-83698961 Msa1131180:CDS 50.0%
! CATTGGTCCAGCAAAGCATC+CGG - chr7_3:83698974-83698993 None:intergenic 50.0%
ACCCCATGAGGCTTAAAAGC+AGG - chr7_3:83699107-83699126 None:intergenic 50.0%
AAACCTAGGCACTCGGAATC+GGG - chr7_3:83699151-83699170 None:intergenic 50.0%
! GATTCCGAGTGCCTAGGTTT+TGG + chr7_3:83699151-83699170 Msa1131180:CDS 50.0%
! TTCCGAGTGCCTAGGTTTTG+GGG + chr7_3:83699153-83699172 Msa1131180:CDS 50.0%
ATCCCCAAAACCTAGGCACT+CGG - chr7_3:83699158-83699177 None:intergenic 50.0%
! TGAGTTGAGTGTGAGAGACG+AGG - chr7_3:83699418-83699437 None:intergenic 50.0%
TGCCATATCCCTAGGCAATG+TGG + chr7_3:83700493-83700512 Msa1131180:intron 50.0%
GCCATATCCCTAGGCAATGT+GGG + chr7_3:83700494-83700513 Msa1131180:intron 50.0%
TCCCACATTGCCTAGGGATA+TGG - chr7_3:83700498-83700517 None:intergenic 50.0%
TTGTGTAGGTGTGAAGGGGA+TGG - chr7_3:83700527-83700546 None:intergenic 50.0%
! AGTGTTGGAGGCTGCAATGA+TGG + chr7_3:83700551-83700570 Msa1131180:intron 50.0%
TGGGAATTCTGCCTTCACTG+TGG - chr7_3:83700613-83700632 None:intergenic 50.0%
TCAATGACGAAGAGCAGTGC+AGG + chr7_3:83701354-83701373 Msa1131180:three_prime_UTR 50.0%
CACCAGGTGTAGCGTACATT+GGG - chr7_3:83701450-83701469 None:intergenic 50.0%
ACACCAGGTGTAGCGTACAT+TGG - chr7_3:83701451-83701470 None:intergenic 50.0%
ATGTACGCTACACCTGGTGT+TGG + chr7_3:83701451-83701470 Msa1131180:intron 50.0%
CAACAAGAACAGGTGCTTCC+GGG - chr7_3:83701917-83701936 None:intergenic 50.0%
CCAACAAGAACAGGTGCTTC+CGG - chr7_3:83701918-83701937 None:intergenic 50.0%
ACAATCCATTTGGCCCACCT+GGG - chr7_3:83702352-83702371 None:intergenic 50.0%
AACAATCCATTTGGCCCACC+TGG - chr7_3:83702353-83702372 None:intergenic 50.0%
!! AGGTGGGCCAAATGGATTGT+TGG + chr7_3:83702352-83702371 Msa1131180:three_prime_UTR 50.0%
CTTTCTCTCCATCAGCCACT+TGG - chr7_3:83702452-83702471 None:intergenic 50.0%
GTAGTTGAGGATGCCGCCAT+TGG - chr7_3:83696282-83696301 None:intergenic 55.0%
AGGGAGGGGATTGAGAGGAT+GGG - chr7_3:83696326-83696345 None:intergenic 55.0%
TGAGGAGAATGGAGAGGGAG+GGG - chr7_3:83696340-83696359 None:intergenic 55.0%
GATGAGGAGAATGGAGAGGG+AGG - chr7_3:83696342-83696361 None:intergenic 55.0%
GGAGGATGAGGAGAATGGAG+AGG - chr7_3:83696346-83696365 None:intergenic 55.0%
! ACCGAGAGCGAGAAGTGTGA+CGG - chr7_3:83696462-83696481 None:intergenic 55.0%
GCGAGAGATGAGAAGACGTC+GGG - chr7_3:83696494-83696513 None:intergenic 55.0%
GGCGAGAGATGAGAAGACGT+CGG - chr7_3:83696495-83696514 None:intergenic 55.0%
!! GAAGCCGGTACGGTATTGAC+CGG - chr7_3:83696528-83696547 None:intergenic 55.0%
!! GGTCAATACCGTACCGGCTT+CGG + chr7_3:83696527-83696546 Msa1131180:CDS 55.0%
! AACAAACGGCGCCGGATCAA+CGG - chr7_3:83696627-83696646 None:intergenic 55.0%
CCAACTGAGCTAAGCTCAGG+AGG - chr7_3:83696986-83697005 None:intergenic 55.0%
CCTCCTGAGCTTAGCTCAGT+TGG + chr7_3:83696983-83697002 Msa1131180:intron 55.0%
! AGTGGCTGGGGTTTGAAACC+CGG - chr7_3:83697036-83697055 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr7_3:83697852-83697871 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr7_3:83697851-83697870 Msa1131180:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr7_3:83697852-83697871 Msa1131180:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr7_3:83697858-83697877 Msa1131180:intron 55.0%
!! CATTGCGATGGTGCTGGTTG+AGG - chr7_3:83698535-83698554 None:intergenic 55.0%
CTCAACCAGCACCATCGCAA+TGG + chr7_3:83698533-83698552 Msa1131180:CDS 55.0%
CTGTTCCATTGCGATGGTGC+TGG - chr7_3:83698541-83698560 None:intergenic 55.0%
! AGCAGAGCATTTGCCTGTGG+TGG + chr7_3:83698750-83698769 Msa1131180:CDS 55.0%
GCATTTGCCTGTGGTGGTTG+TGG + chr7_3:83698756-83698775 Msa1131180:CDS 55.0%
ATTCACGAGCTCTCCAGCTG+TGG - chr7_3:83698812-83698831 None:intergenic 55.0%
AAACTGCCGCAGGCATTCCT+AGG + chr7_3:83698859-83698878 Msa1131180:CDS 55.0%
GGTCTTACCGTGCTAGCATG+GGG + chr7_3:83698880-83698899 Msa1131180:CDS 55.0%
TGGTCATCCGGCAATGGCAA+TGG + chr7_3:83698948-83698967 Msa1131180:CDS 55.0%
GTGAGAGACGAGGAGAAACC+AGG - chr7_3:83699408-83699427 None:intergenic 55.0%
GGGAGTCACGAGCAATGAGT+TGG - chr7_3:83699536-83699555 None:intergenic 55.0%
GAGTGCGTGAAAAGACCTGC+AGG - chr7_3:83699877-83699896 None:intergenic 55.0%
CTAGAGGCAGACCACAGTGA+AGG + chr7_3:83700599-83700618 Msa1131180:intron 55.0%
GACAAAGTGACCCGGCATCA+TGG + chr7_3:83701003-83701022 Msa1131180:intron 55.0%
! AGCTTGTTCTGTTGCCCGAC+AGG - chr7_3:83701330-83701349 None:intergenic 55.0%
CTCCCAATGTACGCTACACC+TGG + chr7_3:83701445-83701464 Msa1131180:intron 55.0%
GCGCTCTTTGAATGGAACCG+TGG + chr7_3:83701713-83701732 Msa1131180:intron 55.0%
!! CCGGAAGCACCTGTTCTTGT+TGG + chr7_3:83701915-83701934 Msa1131180:three_prime_UTR 55.0%
AGGACCAGTGTTAGGAACCC+AGG + chr7_3:83702332-83702351 Msa1131180:three_prime_UTR 55.0%
ACCAGTGTTAGGAACCCAGG+TGG + chr7_3:83702335-83702354 Msa1131180:three_prime_UTR 55.0%
CCAGTGTTAGGAACCCAGGT+GGG + chr7_3:83702336-83702355 Msa1131180:three_prime_UTR 55.0%
ACTGAGTGGGGTTGTCCAAG+TGG + chr7_3:83702434-83702453 Msa1131180:three_prime_UTR 55.0%
!! TATGGGTGCTGACTGCTGAG+AGG + chr7_3:83702498-83702517 Msa1131180:three_prime_UTR 55.0%
GAGGGAGGGGATTGAGAGGA+TGG - chr7_3:83696327-83696346 None:intergenic 60.0%
TGGAGAGGGAGGGGATTGAG+AGG - chr7_3:83696331-83696350 None:intergenic 60.0%
AGTGTGACGGCGGCCATACT+AGG - chr7_3:83696449-83696468 None:intergenic 60.0%
! GAGAGCGAGAAGTGTGACGG+CGG - chr7_3:83696459-83696478 None:intergenic 60.0%
GCCGTCACACTTCTCGCTCT+CGG + chr7_3:83696458-83696477 Msa1131180:CDS 60.0%
! GTATTGACCGGCGCGAAGAG+CGG - chr7_3:83696516-83696535 None:intergenic 60.0%
! GTATAGCGCCGAAGCCGGTA+CGG - chr7_3:83696538-83696557 None:intergenic 60.0%
! GGAGAGTATAGCGCCGAAGC+CGG - chr7_3:83696543-83696562 None:intergenic 60.0%
TTCGGCGCTATACTCTCCGC+CGG + chr7_3:83696545-83696564 Msa1131180:CDS 60.0%
!! AGCAGAGACGAAAGCACCGG+CGG - chr7_3:83696564-83696583 None:intergenic 60.0%
! ACAAACGGCGCCGGATCAAC+GGG - chr7_3:83696626-83696645 None:intergenic 60.0%
GACAGGAAGCTCCCATGCCT+TGG - chr7_3:83698488-83698507 None:intergenic 60.0%
ACGAAGGCCACAACCACCAC+AGG - chr7_3:83698766-83698785 None:intergenic 60.0%
CACGCTTCTCAAACTGCCGC+AGG + chr7_3:83698849-83698868 Msa1131180:CDS 60.0%
CATCCGGCAATGGCAATGGC+CGG + chr7_3:83698952-83698971 Msa1131180:CDS 60.0%
CATCCGGCCATTGCCATTGC+CGG - chr7_3:83698958-83698977 None:intergenic 60.0%
GCAATGGCCGGATGCTTTGC+TGG + chr7_3:83698964-83698983 Msa1131180:CDS 60.0%
CCCACCTGGGTTCCTAACAC+TGG - chr7_3:83702339-83702358 None:intergenic 60.0%
AGGAACCCAGGTGGGCCAAA+TGG + chr7_3:83702344-83702363 Msa1131180:three_prime_UTR 60.0%
GGGGTTGTCCAAGTGGCTGA+TGG + chr7_3:83702441-83702460 Msa1131180:three_prime_UTR 60.0%
! CGCGCCGGTCAATACCGTAC+CGG + chr7_3:83696521-83696540 Msa1131180:CDS 65.0%
! GGCGCCGGATCAACGGGAAA+AGG - chr7_3:83696620-83696639 None:intergenic 65.0%
GGTCCCGATTCCGAGTGCCT+AGG + chr7_3:83699145-83699164 Msa1131180:CDS 65.0%
TCTCTCGCCGCTCTTCGCGC+CGG + chr7_3:83696506-83696525 Msa1131180:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 83696005 83702587 83696005 ID=Msa1131180;Name=Msa1131180
chr7_3 mRNA 83696005 83702587 83696005 ID=Msa1131180-mRNA-1;Parent=Msa1131180;Name=Msa1131180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=120|0.66|0.75|1|0.33|0.5|4|1495|518
chr7_3 exon 83696005 83696916 83696005 ID=Msa1131180-mRNA-1:exon:24837;Parent=Msa1131180-mRNA-1
chr7_3 exon 83698481 83699694 83698481 ID=Msa1131180-mRNA-1:exon:24838;Parent=Msa1131180-mRNA-1
chr7_3 exon 83701204 83701375 83701204 ID=Msa1131180-mRNA-1:exon:24839;Parent=Msa1131180-mRNA-1
chr7_3 exon 83701714 83702587 83701714 ID=Msa1131180-mRNA-1:exon:24840;Parent=Msa1131180-mRNA-1
chr7_3 five_prime_UTR 83696005 83696124 83696005 ID=Msa1131180-mRNA-1:five_prime_utr;Parent=Msa1131180-mRNA-1
chr7_3 CDS 83696125 83696916 83696125 ID=Msa1131180-mRNA-1:cds;Parent=Msa1131180-mRNA-1
chr7_3 CDS 83698481 83699245 83698481 ID=Msa1131180-mRNA-1:cds;Parent=Msa1131180-mRNA-1
chr7_3 three_prime_UTR 83699246 83699694 83699246 ID=Msa1131180-mRNA-1:three_prime_utr;Parent=Msa1131180-mRNA-1
chr7_3 three_prime_UTR 83701204 83701375 83701204 ID=Msa1131180-mRNA-1:three_prime_utr;Parent=Msa1131180-mRNA-1
chr7_3 three_prime_UTR 83701714 83702587 83701714 ID=Msa1131180-mRNA-1:three_prime_utr;Parent=Msa1131180-mRNA-1
Gene Sequence

>Msa1131180

ATGGCTTTGAAAACCATTTCACTCTCACTAATCCTCACTCTCATTATCATCTTCTTCATCACAATTCCTCCCTCTCCATCCCTCTTAATCACAACAACTTCTCCTCTTCGTAGATCACTCCTCAACAACATCGCCCCATCTTGCCCCATTCAATCCAATGGCGGCATCCTCAACTACCACTGCATTTTCCCTCAAACTCCCATCCTCTCAATCCCCTCCCTCTCCATTCTCCTCATCCTCCATTTCTACATCCTCATCAAAACCGCTTCTCACCATTTCTCAATCGTCACAACTAAACTCGCTTCTCACCTCAATCTCTCTCCTAGTATGGCCGCCGTCACACTTCTCGCTCTCGGTAACGGCTCTCCCGACGTCTTCTCATCTCTCGCCGCTCTTCGCGCCGGTCAATACCGTACCGGCTTCGGCGCTATACTCTCCGCCGGTGCTTTCGTCTCTGCTCTTGTTGTCGGCTTTGTCGCGATCTACGCTGCTCCTTTTCCCGTTGATCCGGCGCCGTTTGTTAGAGATGTGTTGTTCTACTTAACTGCTGCTATGTTTCTGTTTTATGTTTATCTTAGTGCTGAGATTTTTCTATGGCAAGCCGTTGGATTCGTTGCGTTCTATCTTTTCTTTGTTGGTTTTGTGTTTTACATGGATTTGGGAATGGCCAATCGGAGGGAAAAGAGTTCTGCGGATCTTGAGGGACAAATTGATTCCTATTACGACGAAAAAGCGTCCGGATCTGTAGAAAAAGATAAACACGCTTCTGGATTTCGTGGATCTTTTGGTTCGATTTCCAAGGCATGGGAGCTTCCTGTCTCAACCCTCTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAACAGATTTTATGCATCGGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCATGTAACTCATTCGTGCCACTTAATCATCCCATAGTTTTCCTCCTCCCTAATACTCTTTTCCCTCTGTGGTCCGTAGTGTTCATGACAAGCTTCTCTCTTGCATTTCTCCATTTTGTATTGGAAAAAGAACCCCCAAAAGCAGAGCATTTGCCTGTGGTGGTTGTGGCCTTCGTTATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTCGTGAATTGCCTTGAAGCTTTAGGCACGCTTCTCAAACTGCCGCAGGCATTCCTAGGTCTTACCGTGCTAGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCGGCAATGGCAATGGCCGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACAAATATATATCCTAAAGCCTATGAACTTAATTTCCACGTTGGTATAGTGATTGCATTTGTGTTCCTGCTTTTAAGCCTCATGGGGTCTCTCTTAGTAATCACTTGGTCCCGATTCCGAGTGCCTAGGTTTTGGGGATTCTGTCTCGTAGGCCTCTATATTGTTTTTATGGCAGCGAGTTCAGCAGTAGCCATCTTTTCAAGTTGA
Protein sequence

>Msa1131180

MALKTISLSLILTLIIIFFITIPPSPSLLITTTSPLRRSLLNNIAPSCPIQSNGGILNYHCIFPQTPILSIPSLSILLILHFYILIKTASHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFPVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGMANRREKSSADLEGQIDSYYDEKASGSVEKDKHASGFRGSFGSISKAWELPVSTLLRLTIPQPAPSQWNRFYASANIALCPLALLYACNSFVPLNHPIVFLLPNTLFPLWSVVFMTSFSLAFLHFVLEKEPPKAEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLPQAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIVFMAASSAVAIFSS*